Query 033160
Match_columns 126
No_of_seqs 63 out of 65
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 17:21:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033160.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033160hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zu2_A Mitochondrial import re 99.7 9.2E-18 3.1E-22 126.5 7.2 63 1-63 61-149 (158)
2 4ga2_A E3 SUMO-protein ligase 97.8 2.1E-05 7.1E-10 53.7 4.4 59 2-60 13-107 (150)
3 4gco_A Protein STI-1; structur 97.8 3.4E-05 1.2E-09 51.6 5.3 28 19-46 95-122 (126)
4 4gco_A Protein STI-1; structur 97.7 8.6E-05 2.9E-09 49.7 6.2 58 2-59 29-122 (126)
5 3upv_A Heat shock protein STI1 97.7 0.00011 3.7E-09 47.0 5.8 37 3-39 21-72 (126)
6 2cpt_A SKD1 protein, vacuolar 97.6 0.00052 1.8E-08 49.4 9.3 62 1-62 14-87 (117)
7 3vtx_A MAMA; tetratricopeptide 97.5 2.6E-05 8.9E-10 52.5 1.0 22 18-39 120-141 (184)
8 2vgx_A Chaperone SYCD; alterna 97.4 0.00042 1.4E-08 47.3 6.4 54 3-56 38-127 (148)
9 2xcb_A PCRH, regulatory protei 97.4 0.00052 1.8E-08 45.5 6.6 37 3-39 35-86 (142)
10 1zu2_A Mitochondrial import re 97.4 0.00031 1.1E-08 52.6 6.1 38 2-39 18-80 (158)
11 2pl2_A Hypothetical conserved 97.3 0.00088 3E-08 47.7 7.6 57 3-60 56-159 (217)
12 4gcn_A Protein STI-1; structur 97.3 0.00036 1.2E-08 46.4 5.1 29 16-44 94-122 (127)
13 3sz7_A HSC70 cochaperone (SGT) 97.3 0.00063 2.1E-08 45.6 6.3 51 3-53 28-114 (164)
14 1wfd_A Hypothetical protein 15 97.2 0.0013 4.4E-08 45.3 7.1 62 1-62 11-83 (93)
15 4ga2_A E3 SUMO-protein ligase 97.2 0.00091 3.1E-08 45.4 6.2 38 2-39 47-99 (150)
16 4g1t_A Interferon-induced prot 97.2 0.00065 2.2E-08 51.7 5.7 22 19-40 152-173 (472)
17 4gcn_A Protein STI-1; structur 97.2 0.00079 2.7E-08 44.7 5.5 25 17-41 20-44 (127)
18 3q49_B STIP1 homology and U bo 97.1 0.002 6.8E-08 40.8 6.7 38 2-39 25-77 (137)
19 1elw_A TPR1-domain of HOP; HOP 97.1 0.0017 5.8E-08 39.0 6.0 37 3-39 21-72 (118)
20 2kat_A Uncharacterized protein 97.0 0.00047 1.6E-08 43.6 3.3 37 3-39 2-53 (115)
21 3rkv_A Putative peptidylprolyl 97.0 0.00087 3E-08 44.8 4.7 31 17-47 109-140 (162)
22 3sz7_A HSC70 cochaperone (SGT) 97.0 0.00047 1.6E-08 46.2 3.3 48 2-49 61-125 (164)
23 2dba_A Smooth muscle cell asso 97.0 0.0022 7.5E-08 40.5 6.1 26 20-45 114-139 (148)
24 1na3_A Designed protein CTPR2; 96.9 0.0021 7.1E-08 37.9 5.4 24 20-43 58-81 (91)
25 3vtx_A MAMA; tetratricopeptide 96.9 0.00074 2.5E-08 45.3 3.6 25 18-42 154-178 (184)
26 1elw_A TPR1-domain of HOP; HOP 96.9 0.0024 8.2E-08 38.3 5.5 47 2-48 54-115 (118)
27 3upv_A Heat shock protein STI1 96.9 0.0013 4.4E-08 41.9 4.5 48 2-49 54-122 (126)
28 1hxi_A PEX5, peroxisome target 96.9 0.0019 6.4E-08 42.6 5.4 44 2-45 33-91 (121)
29 2lni_A Stress-induced-phosphop 96.9 0.0017 5.7E-08 40.2 4.8 37 3-39 33-84 (133)
30 2vyi_A SGTA protein; chaperone 96.8 0.0034 1.2E-07 38.2 5.9 37 3-39 29-80 (131)
31 3urz_A Uncharacterized protein 96.8 0.0054 1.9E-07 43.3 7.7 20 20-39 69-88 (208)
32 1a17_A Serine/threonine protei 96.8 0.0038 1.3E-07 40.2 6.2 20 20-39 62-81 (166)
33 3k9i_A BH0479 protein; putativ 96.7 0.00094 3.2E-08 42.8 2.9 22 18-39 40-61 (117)
34 3gyz_A Chaperone protein IPGC; 96.7 0.002 6.9E-08 45.3 4.8 37 3-39 53-104 (151)
35 3k9i_A BH0479 protein; putativ 96.7 0.0027 9.4E-08 40.6 4.9 39 2-40 43-96 (117)
36 3ma5_A Tetratricopeptide repea 96.7 0.0015 5.1E-08 41.5 3.6 45 12-56 14-79 (100)
37 2dba_A Smooth muscle cell asso 96.7 0.0039 1.3E-07 39.3 5.5 21 19-39 79-99 (148)
38 3rkv_A Putative peptidylprolyl 96.7 0.01 3.5E-07 39.5 7.8 41 18-58 76-138 (162)
39 2l6j_A TPR repeat-containing p 96.7 0.004 1.4E-07 37.9 5.3 36 3-38 21-71 (111)
40 2kc7_A BFR218_protein; tetratr 96.7 0.0045 1.6E-07 37.7 5.6 38 3-40 17-70 (99)
41 3gyz_A Chaperone protein IPGC; 96.7 0.0038 1.3E-07 43.9 5.9 43 16-58 47-110 (151)
42 2v6y_A AAA family ATPase, P60 96.7 0.0027 9.2E-08 42.8 4.9 39 1-39 7-52 (83)
43 2v6x_A Vacuolar protein sortin 96.6 0.0078 2.7E-07 40.1 7.0 59 1-60 9-79 (85)
44 4gyw_A UDP-N-acetylglucosamine 96.6 0.0024 8.3E-08 56.1 5.8 37 3-39 60-111 (723)
45 4gyw_A UDP-N-acetylglucosamine 96.6 0.0029 1E-07 55.6 5.9 57 2-58 25-117 (723)
46 2fbn_A 70 kDa peptidylprolyl i 96.6 0.0048 1.7E-07 42.5 5.9 46 3-48 105-165 (198)
47 2xcb_A PCRH, regulatory protei 96.5 0.0072 2.5E-07 39.8 6.0 32 9-40 22-53 (142)
48 2kck_A TPR repeat; tetratricop 96.5 0.0062 2.1E-07 36.3 5.1 44 2-45 22-82 (112)
49 1na0_A Designed protein CTPR3; 96.4 0.0097 3.3E-07 35.8 5.9 37 3-39 26-77 (125)
50 3urz_A Uncharacterized protein 96.4 0.0056 1.9E-07 43.2 5.5 44 2-45 70-128 (208)
51 3uq3_A Heat shock protein STI1 96.4 0.0076 2.6E-07 41.0 5.9 21 19-39 187-207 (258)
52 2lni_A Stress-induced-phosphop 96.4 0.0052 1.8E-07 37.9 4.5 45 2-46 66-125 (133)
53 3ieg_A DNAJ homolog subfamily 96.3 0.0068 2.3E-07 43.0 5.5 30 18-47 319-348 (359)
54 2vgx_A Chaperone SYCD; alterna 96.3 0.0098 3.4E-07 40.4 6.0 29 11-39 27-55 (148)
55 4i17_A Hypothetical protein; T 96.3 0.0092 3.2E-07 41.3 6.0 36 13-48 188-223 (228)
56 1xnf_A Lipoprotein NLPI; TPR, 96.3 0.0082 2.8E-07 41.6 5.6 20 20-39 92-111 (275)
57 2vyi_A SGTA protein; chaperone 96.3 0.0099 3.4E-07 36.1 5.4 45 3-47 63-122 (131)
58 1hxi_A PEX5, peroxisome target 96.3 0.0063 2.2E-07 40.0 4.7 31 9-39 21-51 (121)
59 1na3_A Designed protein CTPR2; 96.3 0.014 4.7E-07 34.3 5.8 29 12-40 16-44 (91)
60 2w2u_A Hypothetical P60 katani 96.2 0.0072 2.5E-07 41.0 5.0 38 2-39 16-60 (83)
61 2hr2_A Hypothetical protein; a 96.2 0.0093 3.2E-07 44.5 6.0 24 16-39 75-98 (159)
62 1a17_A Serine/threonine protei 96.2 0.0099 3.4E-07 38.1 5.2 45 3-47 64-123 (166)
63 2e2e_A Formate-dependent nitri 96.2 0.0068 2.3E-07 40.5 4.6 20 20-39 130-149 (177)
64 1na0_A Designed protein CTPR3; 96.1 0.015 5.2E-07 34.9 5.4 47 2-48 59-120 (125)
65 2h6f_A Protein farnesyltransfe 96.0 0.0064 2.2E-07 48.9 4.6 21 19-39 180-200 (382)
66 3ieg_A DNAJ homolog subfamily 96.0 0.012 4.3E-07 41.7 5.4 22 18-39 285-306 (359)
67 2fbn_A 70 kDa peptidylprolyl i 96.0 0.019 6.3E-07 39.5 6.1 43 18-60 101-164 (198)
68 1ihg_A Cyclophilin 40; ppiase 95.9 0.013 4.5E-07 46.4 5.8 21 19-39 287-307 (370)
69 1ihg_A Cyclophilin 40; ppiase 95.9 0.011 3.6E-07 46.9 5.2 54 3-56 290-358 (370)
70 2kc7_A BFR218_protein; tetratr 95.9 0.024 8.3E-07 34.4 5.8 31 9-39 4-34 (99)
71 2h6f_A Protein farnesyltransfe 95.9 0.013 4.6E-07 47.0 5.8 58 2-59 113-207 (382)
72 2v5f_A Prolyl 4-hydroxylase su 95.9 0.017 5.8E-07 37.6 5.3 31 19-49 60-90 (104)
73 1p5q_A FKBP52, FK506-binding p 95.8 0.013 4.5E-07 45.1 5.2 46 3-48 213-273 (336)
74 1xnf_A Lipoprotein NLPI; TPR, 95.8 0.021 7.2E-07 39.5 5.7 24 18-41 124-147 (275)
75 2pzi_A Probable serine/threoni 95.8 0.015 5E-07 49.4 5.8 58 2-59 449-541 (681)
76 1p5q_A FKBP52, FK506-binding p 95.8 0.018 6E-07 44.3 5.8 42 18-59 209-271 (336)
77 4abn_A Tetratricopeptide repea 95.7 0.032 1.1E-06 44.9 7.4 18 19-36 235-252 (474)
78 1wao_1 Serine/threonine protei 95.7 0.02 6.9E-07 46.7 6.2 56 3-58 23-114 (477)
79 2pl2_A Hypothetical conserved 95.7 0.013 4.4E-07 41.6 4.5 38 2-39 21-73 (217)
80 2vsy_A XCC0866; transferase, g 95.7 0.01 3.4E-07 47.9 4.3 37 3-39 40-91 (568)
81 3u4t_A TPR repeat-containing p 95.7 0.0083 2.8E-07 41.8 3.3 31 17-47 233-263 (272)
82 3q49_B STIP1 homology and U bo 95.6 0.0054 1.9E-07 38.8 2.2 48 2-49 59-126 (137)
83 2xev_A YBGF; tetratricopeptide 95.6 0.039 1.3E-06 34.3 6.1 20 19-38 53-72 (129)
84 4i17_A Hypothetical protein; T 95.6 0.018 6.1E-07 39.9 4.9 22 18-39 55-76 (228)
85 3qky_A Outer membrane assembly 95.6 0.041 1.4E-06 39.1 6.8 31 19-49 209-239 (261)
86 2vsy_A XCC0866; transferase, g 95.6 0.017 5.9E-07 46.5 5.4 44 2-45 73-131 (568)
87 3hym_B Cell division cycle pro 95.6 0.02 6.7E-07 40.4 5.0 44 3-46 253-311 (330)
88 2q7f_A YRRB protein; TPR, prot 95.5 0.0095 3.3E-07 40.5 3.2 23 17-39 171-193 (243)
89 3bee_A Putative YFRE protein; 95.5 0.01 3.4E-07 39.2 3.2 37 2-38 25-76 (93)
90 1fch_A Peroxisomal targeting s 95.5 0.034 1.2E-06 40.2 6.3 22 18-39 264-285 (368)
91 3ma5_A Tetratricopeptide repea 95.5 0.006 2.1E-07 38.6 1.9 38 2-39 23-75 (100)
92 2xev_A YBGF; tetratricopeptide 95.4 0.033 1.1E-06 34.7 5.2 31 17-47 88-118 (129)
93 2l6j_A TPR repeat-containing p 95.4 0.018 6.1E-07 34.9 3.9 38 8-45 7-44 (111)
94 2fo7_A Synthetic consensus TPR 95.4 0.067 2.3E-06 32.1 6.4 39 3-41 18-71 (136)
95 3as5_A MAMA; tetratricopeptide 95.4 0.058 2E-06 34.4 6.4 22 18-39 89-110 (186)
96 2q7f_A YRRB protein; TPR, prot 95.4 0.041 1.4E-06 37.3 5.9 37 3-39 74-125 (243)
97 1pc2_A Mitochondria fission pr 95.4 0.019 6.5E-07 42.9 4.6 47 2-48 51-114 (152)
98 4eqf_A PEX5-related protein; a 95.4 0.043 1.5E-06 40.2 6.4 21 19-39 227-247 (365)
99 3mkr_A Coatomer subunit epsilo 95.3 0.023 8E-07 42.8 5.0 26 17-42 212-237 (291)
100 1w3b_A UDP-N-acetylglucosamine 95.3 0.016 5.5E-07 43.1 4.0 18 21-38 219-236 (388)
101 1w3b_A UDP-N-acetylglucosamine 95.3 0.03 1E-06 41.6 5.4 20 20-39 184-203 (388)
102 3uq3_A Heat shock protein STI1 95.2 0.024 8.2E-07 38.5 4.4 47 2-48 189-256 (258)
103 2kck_A TPR repeat; tetratricop 95.2 0.029 1E-06 33.2 4.2 23 18-40 19-41 (112)
104 1kt0_A FKBP51, 51 kDa FK506-bi 95.1 0.023 7.8E-07 45.8 4.6 46 3-48 334-394 (457)
105 4a5x_A MITD1, MIT domain-conta 95.0 0.073 2.5E-06 36.1 6.3 41 4-45 15-62 (86)
106 2y4t_A DNAJ homolog subfamily 95.0 0.04 1.4E-06 41.2 5.4 45 3-47 312-371 (450)
107 1elr_A TPR2A-domain of HOP; HO 95.0 0.061 2.1E-06 32.6 5.3 29 17-46 91-119 (131)
108 3fp2_A TPR repeat-containing p 95.0 0.11 3.7E-06 39.7 7.8 21 19-39 442-462 (537)
109 1kt0_A FKBP51, 51 kDa FK506-bi 94.9 0.035 1.2E-06 44.7 5.3 42 18-59 330-392 (457)
110 3cv0_A Peroxisome targeting si 94.9 0.061 2.1E-06 37.8 5.9 21 19-39 186-206 (327)
111 2ho1_A Type 4 fimbrial biogene 94.9 0.069 2.4E-06 36.8 6.0 23 18-40 188-210 (252)
112 1elr_A TPR2A-domain of HOP; HO 94.9 0.096 3.3E-06 31.7 6.1 23 17-39 16-38 (131)
113 3hym_B Cell division cycle pro 94.8 0.091 3.1E-06 37.0 6.6 22 18-39 172-193 (330)
114 2e2e_A Formate-dependent nitri 94.8 0.0091 3.1E-07 39.9 1.3 29 17-45 56-84 (177)
115 2if4_A ATFKBP42; FKBP-like, al 94.7 0.013 4.4E-07 45.2 2.2 28 19-46 278-305 (338)
116 1hh8_A P67PHOX, NCF-2, neutrop 94.7 0.025 8.6E-07 38.3 3.4 21 19-39 51-71 (213)
117 3mkr_A Coatomer subunit epsilo 94.6 0.072 2.5E-06 40.1 5.9 38 2-39 146-200 (291)
118 2xpi_A Anaphase-promoting comp 94.5 0.051 1.8E-06 42.4 5.0 28 18-45 563-590 (597)
119 3cv0_A Peroxisome targeting si 94.5 0.084 2.9E-06 37.1 5.6 40 3-42 189-243 (327)
120 2zan_A Vacuolar protein sortin 94.4 0.0069 2.3E-07 49.9 0.0 61 1-61 7-79 (444)
121 2pzi_A Probable serine/threoni 94.4 0.06 2E-06 45.7 5.7 57 3-59 408-508 (681)
122 2if4_A ATFKBP42; FKBP-like, al 94.3 0.022 7.6E-07 43.9 2.7 21 19-39 244-264 (338)
123 2ond_A Cleavage stimulation fa 94.2 0.15 5.1E-06 37.7 6.9 19 21-39 80-99 (308)
124 2kat_A Uncharacterized protein 94.2 0.03 1E-06 35.2 2.6 38 2-39 35-87 (115)
125 4eqf_A PEX5-related protein; a 94.1 0.073 2.5E-06 39.0 5.0 38 2-39 81-133 (365)
126 3qou_A Protein YBBN; thioredox 94.1 0.043 1.5E-06 40.9 3.8 21 19-39 131-151 (287)
127 2vq2_A PILW, putative fimbrial 94.1 0.089 3E-06 34.9 5.0 40 2-41 24-78 (225)
128 2y4t_A DNAJ homolog subfamily 94.0 0.12 4E-06 38.7 5.9 21 19-39 108-128 (450)
129 2ho1_A Type 4 fimbrial biogene 94.0 0.061 2.1E-06 37.0 4.1 43 3-45 192-249 (252)
130 1wao_1 Serine/threonine protei 94.0 0.069 2.4E-06 43.5 5.0 47 2-48 56-117 (477)
131 2gw1_A Mitochondrial precursor 93.9 0.091 3.1E-06 39.6 5.3 46 3-48 432-492 (514)
132 2c2l_A CHIP, carboxy terminus 93.9 0.077 2.6E-06 39.5 4.7 37 3-39 21-72 (281)
133 4g1t_A Interferon-induced prot 93.8 0.1 3.4E-06 39.6 5.2 46 2-47 350-414 (472)
134 1hh8_A P67PHOX, NCF-2, neutrop 93.6 0.074 2.5E-06 35.9 3.9 38 2-39 53-105 (213)
135 2r5s_A Uncharacterized protein 93.5 0.1 3.6E-06 35.3 4.5 21 18-38 121-141 (176)
136 2vq2_A PILW, putative fimbrial 93.5 0.2 6.7E-06 33.2 5.7 22 19-40 161-183 (225)
137 3qou_A Protein YBBN; thioredox 93.4 0.096 3.3E-06 38.9 4.6 42 4-45 203-261 (287)
138 4abn_A Tetratricopeptide repea 93.4 0.1 3.5E-06 41.9 5.1 20 18-37 150-169 (474)
139 3qky_A Outer membrane assembly 93.4 0.13 4.5E-06 36.5 5.1 28 18-45 110-137 (261)
140 3as5_A MAMA; tetratricopeptide 93.3 0.16 5.5E-06 32.3 5.0 42 3-44 93-149 (186)
141 1fch_A Peroxisomal targeting s 93.3 0.13 4.4E-06 37.2 5.0 38 3-40 81-133 (368)
142 3u4t_A TPR repeat-containing p 93.2 0.079 2.7E-06 36.8 3.6 37 3-39 91-142 (272)
143 2r5s_A Uncharacterized protein 93.1 0.039 1.3E-06 37.4 1.8 23 18-41 53-75 (176)
144 2yhc_A BAMD, UPF0169 lipoprote 92.9 0.11 3.8E-06 36.6 4.0 37 3-39 21-75 (225)
145 2ond_A Cleavage stimulation fa 92.8 0.35 1.2E-05 35.7 6.8 16 21-36 150-165 (308)
146 2xpi_A Anaphase-promoting comp 92.5 0.28 9.6E-06 38.2 6.1 22 18-39 529-550 (597)
147 3fp2_A TPR repeat-containing p 92.4 0.21 7.1E-06 38.1 5.2 44 3-46 445-503 (537)
148 2gw1_A Mitochondrial precursor 92.2 0.27 9.1E-06 37.0 5.5 37 3-39 23-73 (514)
149 2yhc_A BAMD, UPF0169 lipoprote 92.0 0.47 1.6E-05 33.3 6.4 24 19-42 110-133 (225)
150 2hr2_A Hypothetical protein; a 92.0 0.21 7.2E-06 37.1 4.7 25 14-38 20-44 (159)
151 2fo7_A Synthetic consensus TPR 91.9 0.29 9.9E-06 29.2 4.5 38 3-40 52-104 (136)
152 3ro3_A PINS homolog, G-protein 91.2 0.28 9.7E-06 30.2 4.0 18 19-36 63-80 (164)
153 3ro3_A PINS homolog, G-protein 91.1 0.19 6.5E-06 31.0 3.1 14 21-34 105-118 (164)
154 2qfc_A PLCR protein; TPR, HTH, 91.0 0.34 1.2E-05 35.4 4.9 22 18-39 168-192 (293)
155 3ly7_A Transcriptional activat 90.1 0.28 9.6E-06 41.2 4.3 40 3-42 294-347 (372)
156 1qqe_A Vesicular transport pro 89.5 0.34 1.2E-05 35.7 3.8 37 3-39 135-192 (292)
157 4b4t_Q 26S proteasome regulato 89.3 0.33 1.1E-05 36.3 3.7 34 6-39 5-38 (434)
158 3gw4_A Uncharacterized protein 89.0 1.5 5.2E-05 28.7 6.5 17 18-34 79-95 (203)
159 2qfc_A PLCR protein; TPR, HTH, 89.0 0.5 1.7E-05 34.5 4.4 19 20-38 130-148 (293)
160 4a1s_A PINS, partner of inscut 88.9 0.26 8.8E-06 36.4 2.8 20 19-38 317-336 (411)
161 3ro2_A PINS homolog, G-protein 88.5 1.2 4E-05 30.8 5.8 28 12-39 12-39 (338)
162 2c2l_A CHIP, carboxy terminus 88.5 0.45 1.5E-05 35.3 3.9 35 9-43 8-42 (281)
163 3ulq_A Response regulator aspa 88.4 0.74 2.5E-05 34.5 5.1 31 3-33 201-252 (383)
164 3u64_A Protein TP_0956; tetrat 88.4 0.84 2.9E-05 37.7 5.9 37 2-38 179-237 (301)
165 3q15_A PSP28, response regulat 88.0 0.64 2.2E-05 35.0 4.5 21 18-38 235-260 (378)
166 4a1s_A PINS, partner of inscut 88.0 1.4 4.9E-05 32.4 6.3 25 15-39 58-82 (411)
167 3sf4_A G-protein-signaling mod 86.8 1.2 3.9E-05 32.3 5.1 28 12-39 16-43 (406)
168 3u3w_A Transcriptional activat 86.5 2.8 9.4E-05 30.5 7.1 18 20-37 130-147 (293)
169 3bee_A Putative YFRE protein; 86.5 0.57 1.9E-05 30.6 3.1 19 21-39 25-43 (93)
170 1qqe_A Vesicular transport pro 86.4 0.62 2.1E-05 34.3 3.6 38 3-40 175-234 (292)
171 3q15_A PSP28, response regulat 86.1 0.82 2.8E-05 34.4 4.2 17 20-36 156-172 (378)
172 4f3v_A ESX-1 secretion system 85.6 1.1 3.9E-05 35.7 5.0 27 18-45 221-247 (282)
173 2ifu_A Gamma-SNAP; membrane fu 85.4 0.74 2.5E-05 34.1 3.6 20 19-39 209-228 (307)
174 3dss_A Geranylgeranyl transfer 85.1 2.4 8.1E-05 34.3 6.7 27 19-45 207-236 (331)
175 3gw4_A Uncharacterized protein 85.1 1.2 4.1E-05 29.3 4.2 16 19-34 121-136 (203)
176 3ulq_A Response regulator aspa 85.0 0.6 2.1E-05 34.9 2.9 19 19-37 198-216 (383)
177 2ooe_A Cleavage stimulation fa 84.9 4 0.00014 32.3 7.8 16 21-36 372-387 (530)
178 1ouv_A Conserved hypothetical 84.9 1.2 4.2E-05 31.4 4.4 37 2-38 166-219 (273)
179 3sf4_A G-protein-signaling mod 84.0 1.2 4E-05 32.3 4.0 19 19-37 281-299 (406)
180 3o48_A Mitochondria fission 1 83.7 1.8 6E-05 32.1 5.0 38 2-39 59-112 (134)
181 3ro2_A PINS homolog, G-protein 83.6 0.63 2.1E-05 32.1 2.3 18 19-36 97-114 (338)
182 2ooe_A Cleavage stimulation fa 83.3 1.5 5E-05 34.8 4.7 40 2-41 28-82 (530)
183 1nzn_A CGI-135 protein, fissio 82.8 0.88 3E-05 33.0 3.0 21 19-39 88-108 (126)
184 3edt_B KLC 2, kinesin light ch 82.1 0.99 3.4E-05 30.6 2.8 17 18-34 56-72 (283)
185 2ifu_A Gamma-SNAP; membrane fu 81.2 0.61 2.1E-05 34.6 1.7 20 19-38 169-188 (307)
186 1y8m_A FIS1; mitochondria, unk 81.1 2.5 8.6E-05 31.6 5.0 51 2-62 58-124 (144)
187 3edt_B KLC 2, kinesin light ch 81.1 1.2 3.9E-05 30.3 2.9 16 19-34 141-156 (283)
188 2dl1_A Spartin; SPG20, MIT, st 80.1 6.3 0.00022 28.7 6.7 35 15-49 39-78 (116)
189 3nf1_A KLC 1, kinesin light ch 80.0 0.92 3.1E-05 31.5 2.1 17 19-35 209-225 (311)
190 1ouv_A Conserved hypothetical 80.0 1.8 6.2E-05 30.5 3.7 36 2-37 130-182 (273)
191 3u3w_A Transcriptional activat 79.6 1.5 5.1E-05 31.9 3.3 11 4-14 214-224 (293)
192 2wb7_A PT26-6P; extra chromoso 79.5 4 0.00014 36.4 6.5 50 1-50 418-483 (526)
193 2ymb_A MITD1, MIT domain-conta 79.2 0.39 1.3E-05 38.9 0.0 61 2-62 20-91 (257)
194 3ly7_A Transcriptional activat 78.2 1.3 4.5E-05 37.1 2.9 21 19-39 213-233 (372)
195 1dce_A Protein (RAB geranylger 77.3 1.8 6.3E-05 36.5 3.6 27 19-45 206-235 (567)
196 3dss_A Geranylgeranyl transfer 76.5 3.7 0.00013 33.2 5.0 22 18-39 251-272 (331)
197 3dra_A Protein farnesyltransfe 76.3 2.6 9E-05 33.2 4.0 26 20-45 201-229 (306)
198 2crb_A Nuclear receptor bindin 74.5 7.5 0.00026 27.8 5.6 41 9-50 21-66 (97)
199 3q7a_A Farnesyltransferase alp 73.4 3.4 0.00011 33.9 4.1 28 19-46 222-252 (349)
200 1dce_A Protein (RAB geranylger 68.8 6.6 0.00023 33.1 5.0 19 21-39 89-107 (567)
201 1vp7_A Exodeoxyribonuclease VI 68.3 9.9 0.00034 26.9 5.1 30 2-31 32-70 (100)
202 3k1s_A PTS system, cellobiose- 67.1 9.4 0.00032 27.1 4.8 28 4-31 21-48 (109)
203 3nf1_A KLC 1, kinesin light ch 66.5 4.4 0.00015 28.0 2.9 16 19-34 167-182 (311)
204 2w2u_A Hypothetical P60 katani 66.0 3.5 0.00012 27.6 2.3 29 19-47 14-48 (83)
205 3l8r_A PTCA, putative PTS syst 65.0 11 0.00036 27.4 4.8 28 4-31 36-63 (120)
206 3eab_A Spastin; spastin, MIT, 63.7 3.8 0.00013 28.6 2.1 30 16-45 8-46 (89)
207 2e2a_A Protein (enzyme IIA); h 63.1 13 0.00043 26.2 4.8 28 4-31 19-46 (105)
208 1wcr_A PTS system, N, N'-diace 62.2 13 0.00046 26.0 4.8 28 4-31 17-44 (103)
209 2v6y_A AAA family ATPase, P60 61.0 5.9 0.0002 26.2 2.6 28 20-47 7-40 (83)
210 3qww_A SET and MYND domain-con 60.0 6.5 0.00022 32.5 3.3 12 3-14 315-326 (433)
211 2jp3_A FXYD domain-containing 59.0 8.7 0.0003 25.8 3.2 12 85-96 3-14 (67)
212 3dra_A Protein farnesyltransfe 58.8 6.5 0.00022 31.0 2.9 20 20-39 84-103 (306)
213 3q7a_A Farnesyltransferase alp 57.9 15 0.0005 30.1 5.0 18 22-39 142-159 (349)
214 2dl1_A Spartin; SPG20, MIT, st 57.5 2.3 7.8E-05 31.0 0.1 36 10-45 8-49 (116)
215 3r8n_T 30S ribosomal protein S 56.9 18 0.00063 24.7 4.6 33 2-34 26-62 (85)
216 2xm6_A Protein corresponding t 56.6 5.5 0.00019 31.1 2.2 19 19-37 417-435 (490)
217 1ya0_A SMG-7 transcript varian 56.5 7.6 0.00026 33.2 3.2 20 20-39 167-186 (497)
218 3rjv_A Putative SEL1 repeat pr 54.8 50 0.0017 22.8 6.8 18 20-37 104-121 (212)
219 1hz4_A MALT regulatory protein 53.3 20 0.0007 26.2 4.7 18 20-37 29-46 (373)
220 3s6n_M SurviVal motor neuron p 53.1 14 0.00047 22.4 3.0 17 19-35 16-32 (37)
221 2pmr_A Uncharacterized protein 52.5 29 0.00099 23.8 5.1 30 2-31 9-46 (87)
222 2cpt_A SKD1 protein, vacuolar 51.3 7.8 0.00027 27.4 2.1 16 20-35 14-29 (117)
223 3rjv_A Putative SEL1 repeat pr 51.2 8.3 0.00028 27.0 2.2 18 18-35 31-48 (212)
224 1wfd_A Hypothetical protein 15 50.7 8.1 0.00028 26.0 2.0 38 20-58 11-48 (93)
225 4f3v_A ESX-1 secretion system 50.0 24 0.00084 27.9 5.0 59 3-62 5-64 (282)
226 2ic6_A Nucleocapsid protein; h 49.4 44 0.0015 22.8 5.6 35 6-45 7-47 (78)
227 2k48_A Nucleoprotein; viral pr 49.2 40 0.0014 24.4 5.6 37 4-45 35-77 (107)
228 3qwp_A SET and MYND domain-con 48.8 13 0.00044 30.4 3.3 12 3-14 304-315 (429)
229 3u64_A Protein TP_0956; tetrat 48.7 14 0.00047 30.5 3.4 22 16-37 174-195 (301)
230 2zxe_G FXYD10, phospholemman-l 48.1 10 0.00035 26.0 2.1 10 87-96 7-16 (74)
231 2vqe_T 30S ribosomal protein S 47.1 28 0.00095 24.8 4.4 33 2-34 33-69 (106)
232 2oo2_A Hypothetical protein AF 46.5 21 0.00071 24.5 3.6 30 2-31 11-42 (86)
233 3mkr_B Coatomer subunit alpha; 46.2 29 0.00099 28.8 5.0 25 3-27 119-156 (320)
234 4fi5_A Nucleoprotein; structur 45.8 48 0.0016 24.2 5.6 56 6-67 24-90 (113)
235 1hz4_A MALT regulatory protein 45.6 18 0.00063 26.4 3.4 16 20-35 108-123 (373)
236 3mkq_B Coatomer subunit alpha; 43.9 16 0.00054 27.7 2.9 21 15-35 42-64 (177)
237 3qwp_A SET and MYND domain-con 43.5 68 0.0023 26.1 6.8 28 16-45 389-416 (429)
238 2b8i_A PAS factor; four helix 43.2 16 0.00055 25.1 2.6 23 40-62 9-31 (77)
239 2ls4_A High affinity copper up 48.5 5.2 0.00018 22.3 0.0 15 97-111 2-16 (26)
240 2ff4_A Probable regulatory pro 41.6 72 0.0025 25.4 6.6 32 15-46 222-256 (388)
241 2pmr_A Uncharacterized protein 41.3 25 0.00085 24.1 3.3 30 1-30 15-52 (87)
242 1pc2_A Mitochondria fission pr 41.1 19 0.00064 26.5 2.8 23 16-38 46-69 (152)
243 3lxu_X Tripeptidyl-peptidase 2 40.6 29 0.00098 34.0 4.7 35 15-49 1294-1328(1354)
244 1v54_D Cytochrome C oxidase su 40.5 21 0.00071 26.8 3.0 28 95-122 80-108 (147)
245 3umh_A Amyloid beta A4 protein 40.0 1.4E+02 0.0047 23.6 8.4 23 17-39 97-119 (211)
246 3n71_A Histone lysine methyltr 39.9 14 0.00049 30.9 2.3 37 3-39 307-348 (490)
247 3dfb_A Metal-binding protein S 39.5 47 0.0016 23.3 4.6 30 2-31 52-88 (93)
248 2v6x_A Vacuolar protein sortin 39.3 16 0.00054 23.7 2.0 37 20-57 9-45 (85)
249 3mv2_A Coatomer subunit alpha; 39.2 82 0.0028 26.2 6.7 47 2-49 130-194 (325)
250 1klx_A Cysteine rich protein B 39.0 26 0.00088 23.1 3.0 21 18-38 8-28 (138)
251 3n71_A Histone lysine methyltr 38.8 84 0.0029 26.2 6.8 28 20-47 408-440 (490)
252 2ff4_A Probable regulatory pro 38.3 36 0.0012 27.2 4.3 24 16-39 182-205 (388)
253 4b4t_Q 26S proteasome regulato 37.3 19 0.00065 26.7 2.4 17 18-34 188-204 (434)
254 3au4_A Myosin-X; protein-prote 35.8 1.2E+02 0.0041 25.4 7.2 48 20-67 82-132 (555)
255 3qww_A SET and MYND domain-con 35.2 54 0.0019 26.9 5.0 12 3-14 357-368 (433)
256 2y69_D Cytochrome C oxidase su 35.0 28 0.00095 26.7 3.0 28 95-122 102-130 (169)
257 2xm6_A Protein corresponding t 34.6 30 0.001 26.9 3.2 16 19-34 345-360 (490)
258 1xi4_A Clathrin heavy chain; a 34.3 31 0.001 34.6 3.8 54 2-58 1085-1173(1630)
259 1wwp_A Hypothetical protein TT 34.0 87 0.003 21.2 5.2 42 22-63 3-45 (119)
260 2jvf_A De novo protein M7; tet 33.7 79 0.0027 22.1 4.9 30 2-31 31-76 (96)
261 4e6h_A MRNA 3'-END-processing 30.3 36 0.0012 29.9 3.3 37 4-40 50-101 (679)
262 3pmr_A Amyloid-like protein 1; 30.2 2.1E+02 0.007 22.7 8.3 23 17-39 104-126 (219)
263 2ic9_A Nucleocapsid protein; h 29.2 1.5E+02 0.0052 20.9 6.0 55 6-66 7-72 (96)
264 2zan_A Vacuolar protein sortin 27.7 13 0.00044 30.4 0.0 31 18-48 5-41 (444)
265 3e4b_A ALGK; tetratricopeptide 26.5 67 0.0023 25.3 4.0 21 20-40 194-214 (452)
266 3eab_A Spastin; spastin, MIT, 26.3 1.6E+02 0.0055 20.3 5.7 33 15-47 36-70 (89)
267 3mv2_B Coatomer subunit epsilo 26.2 56 0.0019 26.2 3.5 18 17-34 223-240 (310)
268 3u8v_A Metal-binding protein S 25.8 1.1E+02 0.0037 21.6 4.6 29 2-30 52-87 (93)
269 3r45_A Histone H3-like centrom 25.1 1.2E+02 0.0041 23.0 5.0 29 3-31 104-132 (156)
270 3nqj_A Histone H3-like centrom 25.0 1.3E+02 0.0043 20.3 4.6 29 3-31 30-58 (82)
271 3e4b_A ALGK; tetratricopeptide 25.0 43 0.0015 26.4 2.6 18 19-39 231-248 (452)
272 2p32_A Heat shock 70 kDa prote 24.2 1.2E+02 0.004 20.5 4.5 32 15-46 45-78 (120)
273 3fnb_A Acylaminoacyl peptidase 24.2 2E+02 0.0068 22.0 6.2 31 15-45 86-117 (405)
274 2d5u_A N-glycanase 1; pngase, 24.1 14 0.00047 26.7 -0.4 10 34-43 49-58 (124)
275 3nqu_A Histone H3-like centrom 24.0 1.2E+02 0.004 22.6 4.6 29 3-31 88-116 (140)
276 1s6c_B Potassium voltage-gated 23.9 13 0.00045 21.4 -0.4 13 106-118 16-28 (30)
277 2knc_A Integrin alpha-IIB; tra 23.4 85 0.0029 19.9 3.3 24 97-120 21-46 (54)
278 2hue_B Histone H3; mini beta s 23.3 1.4E+02 0.0046 19.9 4.5 28 4-31 29-56 (77)
279 1wty_A Hypothetical protein TT 23.0 1.6E+02 0.0053 19.8 4.9 42 21-63 4-46 (119)
280 1gk6_A Vimentin; intermediate 22.9 1.4E+02 0.0049 18.4 4.7 42 2-46 5-52 (59)
281 2jo1_A Phospholemman; FXYD1, N 22.5 43 0.0015 22.8 1.8 10 87-96 4-13 (72)
282 1t72_A Phosphate transport sys 22.2 2.1E+02 0.0073 20.2 6.6 44 15-63 25-68 (227)
283 1ud0_A HSC70, 70 kDa heat-shoc 22.1 1.6E+02 0.0055 19.2 4.7 18 16-33 32-49 (113)
284 3bu8_A Telomeric repeat-bindin 21.4 87 0.003 25.4 3.7 43 18-60 127-170 (235)
285 3ax2_A Mitochondrial import re 20.4 87 0.003 20.7 3.0 26 20-45 32-61 (73)
No 1
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.72 E-value=9.2e-18 Score=126.46 Aligned_cols=63 Identities=62% Similarity=0.869 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchh
Q 033160 1 MILDAISKLEEALM--------------------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPEL 54 (126)
Q Consensus 1 Mi~dAisKleeAL~--------------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPel 54 (126)
|+++||+.||+||. .+|.+.|++|.+||+|||++||+|+.|+++|+++.|||||
T Consensus 61 ~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el 140 (158)
T 1zu2_A 61 MIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQL 140 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhc
Confidence 46899999999999 1356799999999999999999999999999999999999
Q ss_pred HHHHHHhcc
Q 033160 55 HMEIHKHGL 63 (126)
Q Consensus 55 H~ei~kq~~ 63 (126)
|.+||+|++
T Consensus 141 ~~~~~~~~~ 149 (158)
T 1zu2_A 141 HAEAYKQGL 149 (158)
T ss_dssp HHHHHHSSS
T ss_pred cCccccccc
Confidence 999999976
No 2
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.81 E-value=2.1e-05 Score=53.68 Aligned_cols=59 Identities=14% Similarity=0.250 Sum_probs=42.2
Q ss_pred hHHHHHHHHHHHH----------H-----HHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHH
Q 033160 2 ILDAISKLEEALM----------D-----EAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~----------~-----~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsL 45 (126)
++.||+.|+.|+. . ...+.|++|.++|++|++++|+|. .|+++|
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 4667777777766 1 223457889999999999999887 677777
Q ss_pred HHhhcCchhHHHHHH
Q 033160 46 EVAAKAPELHMEIHK 60 (126)
Q Consensus 46 e~a~KAPelH~ei~k 60 (126)
++.-.-|+.|..+=.
T Consensus 93 ~~~p~~~~~~~~la~ 107 (150)
T 4ga2_A 93 ELNPTQKDLVLKIAE 107 (150)
T ss_dssp HHCTTCHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHH
Confidence 777677777665543
No 3
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.80 E-value=3.4e-05 Score=51.63 Aligned_cols=28 Identities=25% Similarity=0.412 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
+.|++|.++|++|+++||+|...+.+|.
T Consensus 95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 95 REWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 3445555555555555555555444444
No 4
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=97.71 E-value=8.6e-05 Score=49.67 Aligned_cols=58 Identities=16% Similarity=0.135 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsL 45 (126)
.++|+.-|++||. -..++.|++|.++|++|+++||+|. .|+++|
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDAL 108 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3678888888887 3345678889999999999999886 566666
Q ss_pred HHhhcCchhHHHHH
Q 033160 46 EVAAKAPELHMEIH 59 (126)
Q Consensus 46 e~a~KAPelH~ei~ 59 (126)
++.-.-++.+..|.
T Consensus 109 ~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 109 QVDPSNEEAREGVR 122 (126)
T ss_dssp HHCTTCHHHHHHHH
T ss_pred HHCcCCHHHHHHHH
Confidence 66555555555443
No 5
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00011 Score=47.01 Aligned_cols=37 Identities=16% Similarity=0.191 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++||. -...+.|++|.++|++|++++|+|.
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (126)
T 3upv_A 21 PNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV 72 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH
Confidence 567778888877 2334567888888888888888876
No 6
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=97.60 E-value=0.00052 Score=49.38 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=49.3
Q ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHH-----HHHHHhhcCchhHHHHHHhc
Q 033160 1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQ-----KSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk-----KsLe~a~KAPelH~ei~kq~ 62 (126)
|++.|+.-+.+|+. .+|+.+|.+|.++|.+|+..+|.|+.=+ |.-+.-..|=+|+..|..+.
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~~~~ 87 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKNKE 87 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 47899999999998 8999999999999999999997666322 34455677778887776554
No 7
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.47 E-value=2.6e-05 Score=52.49 Aligned_cols=22 Identities=14% Similarity=0.160 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++.|++|.++|+++++.+|+|.
T Consensus 120 ~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 120 MGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH
T ss_pred hCCchhHHHHHHHHHHhcchhh
Confidence 4456666666666666666665
No 8
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=97.41 E-value=0.00042 Score=47.33 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLE 46 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe 46 (126)
++|+.-|++|+. -...+.|++|.++|++|+.++|+|. .|+++|+
T Consensus 38 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 38 EDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777887776 2344568899999999999999885 6777777
Q ss_pred HhhcCchhHH
Q 033160 47 VAAKAPELHM 56 (126)
Q Consensus 47 ~a~KAPelH~ 56 (126)
+.-..|+.+.
T Consensus 118 ~~p~~~~~~~ 127 (148)
T 2vgx_A 118 LIANXPEFXE 127 (148)
T ss_dssp HHTTCGGGHH
T ss_pred HCcCCCcchH
Confidence 7766676653
No 9
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=97.40 E-value=0.00052 Score=45.48 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++|+. -...+.|++|..+|++|++++|+|.
T Consensus 35 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 86 (142)
T 2xcb_A 35 DDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP 86 (142)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc
Confidence 567777777776 2344567888888888888888875
No 10
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.39 E-value=0.00031 Score=52.57 Aligned_cols=38 Identities=18% Similarity=0.287 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM-------------------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~-------------------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++|+..++.|+. .+|++.+++|..+|++|+++||++.
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~ 80 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH
Confidence 4677888888877 4577889999999999999999996
No 11
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.33 E-value=0.00088 Score=47.66 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHH---------------HHHH-----------HHHHHHHHHHHHHHhcCCCcH-----------------
Q 033160 3 LDAISKLEEALM---------------DEAK-----------EYFNKATLYFQQAVDEEPSNE----------------- 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~-----------~~f~kA~~~FqkAvd~dP~Ne----------------- 39 (126)
++|+.-|+.||. -... +.|++|..+|++|++++|+|.
T Consensus 56 ~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 56 NPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence 567777777776 2334 889999999999999999986
Q ss_pred ----HHHHHHHHhhcCchhHHHHHH
Q 033160 40 ----LYQKSLEVAAKAPELHMEIHK 60 (126)
Q Consensus 40 ----~YkKsLe~a~KAPelH~ei~k 60 (126)
.|+++|++. ..|+.|..+=.
T Consensus 136 ~A~~~~~~al~~~-~~~~~~~~la~ 159 (217)
T 2pl2_A 136 KAEASLKQALALE-DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhcc-cchHHHHHHHH
Confidence 677778887 77777766544
No 12
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.31 E-value=0.00036 Score=46.35 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 033160 16 EAKEYFNKATLYFQQAVDEEPSNELYQKS 44 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~dP~Ne~YkKs 44 (126)
.+++.|++|.++|++||+++|+++..++-
T Consensus 94 ~~~~~~~~A~~~~~kal~~~~~~~~~~~l 122 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSLSEFRDPELVKKV 122 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCcCHHHHHHH
Confidence 45567899999999999999998877654
No 13
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.31 E-value=0.00063 Score=45.63 Aligned_cols=51 Identities=24% Similarity=0.211 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLE 46 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe 46 (126)
++|+.-|++||. -...+.|++|.++|++|++++|+|. .|+++|+
T Consensus 28 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 28 SKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567777777776 2334557788888888888888765 6666777
Q ss_pred HhhcCch
Q 033160 47 VAAKAPE 53 (126)
Q Consensus 47 ~a~KAPe 53 (126)
+.-..++
T Consensus 108 ~~p~~~~ 114 (164)
T 3sz7_A 108 AEGNGGS 114 (164)
T ss_dssp HHSSSCC
T ss_pred hCCCchH
Confidence 7766666
No 14
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=97.21 E-value=0.0013 Score=45.28 Aligned_cols=62 Identities=11% Similarity=0.089 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHH----HHHHHHHhhcCchhHHHHHHhc
Q 033160 1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNEL----YQKSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~----YkKsLe~a~KAPelH~ei~kq~ 62 (126)
|++.|+.-+..|+. .+|..+|.+|.++|.+|+..+|+.+. -.|.-+.-..|=+|+..|....
T Consensus 11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~~ 83 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQEK 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 68999999999998 89999999999999999999997664 1134466677777777776543
No 15
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=97.19 E-value=0.00091 Score=45.41 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++|+.-|++||. -...+.|++|..+|++|++++|+|.
T Consensus 47 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 99 (150)
T 4ga2_A 47 YDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK 99 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH
Confidence 3678888999988 4556779999999999999999987
No 16
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=97.16 E-value=0.00065 Score=51.67 Aligned_cols=22 Identities=23% Similarity=0.474 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
..|++|.+||++|++++|+|..
T Consensus 152 ~~y~~A~~~~~kal~~~p~~~~ 173 (472)
T 4g1t_A 152 NQNERAKVCFEKALEKKPKNPE 173 (472)
T ss_dssp THHHHHHHHHHHHHHHSTTCHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHH
Confidence 4689999999999999999873
No 17
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.16 E-value=0.00079 Score=44.67 Aligned_cols=25 Identities=28% Similarity=0.569 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELY 41 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~Y 41 (126)
....|++|.+||++|++++|+|-.+
T Consensus 20 ~~~~~~~A~~~y~~Al~~~p~~~~~ 44 (127)
T 4gcn_A 20 KQKDFEKAHVHYDKAIELDPSNITF 44 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3456899999999999999999733
No 18
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.09 E-value=0.002 Score=40.81 Aligned_cols=38 Identities=11% Similarity=-0.009 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++|+.-|++||. -...+.|++|..+|++|++.+|+|.
T Consensus 25 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 77 (137)
T 3q49_B 25 YPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 77 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH
Confidence 3577788888877 2234567889999999999999886
No 19
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.08 E-value=0.0017 Score=38.99 Aligned_cols=37 Identities=27% Similarity=0.145 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++++. -...+.|++|.++|+++++.+|+|.
T Consensus 21 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 72 (118)
T 1elw_A 21 DDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG 72 (118)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH
Confidence 456666666655 2234456777777777777777665
No 20
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.03 E-value=0.00047 Score=43.64 Aligned_cols=37 Identities=24% Similarity=0.306 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+..|++||. -...+.|++|..+|++|++.+|++.
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 53 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS 53 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH
Confidence 578888888887 3345568999999999999999986
No 21
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.03 E-value=0.00087 Score=44.85 Aligned_cols=31 Identities=10% Similarity=0.218 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNE-LYQKSLEV 47 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne-~YkKsLe~ 47 (126)
.++.|++|..+|++|++++|+|. ..++.|..
T Consensus 109 ~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 109 AAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34556666667777777777666 55555543
No 22
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.01 E-value=0.00047 Score=46.24 Aligned_cols=48 Identities=15% Similarity=0.147 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH--HHHHHHHhh
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL--YQKSLEVAA 49 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~--YkKsLe~a~ 49 (126)
.++|+.-|++||. -..++.|++|.++|++|++++|+|.. |++.|..+.
T Consensus 61 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 61 HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 4678888888887 34556789999999999999999986 788876654
No 23
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.98 E-value=0.0022 Score=40.50 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 20 YFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.|++|.++|+++++++|+|......|
T Consensus 114 ~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 114 RLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp CHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 34444455555555555444444433
No 24
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.94 E-value=0.0021 Score=37.94 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHH
Q 033160 20 YFNKATLYFQQAVDEEPSNELYQK 43 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne~YkK 43 (126)
.|++|.++|++|++.+|+|.....
T Consensus 58 ~~~~A~~~~~~a~~~~p~~~~~~~ 81 (91)
T 1na3_A 58 DYDEAIEYYQKALELDPNNAEAKQ 81 (91)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCCHHHHH
Confidence 345555555555555555544333
No 25
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.92 E-value=0.00074 Score=45.26 Aligned_cols=25 Identities=28% Similarity=0.537 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
.+.|++|.++|++|+++||+|..|+
T Consensus 154 ~g~~~~A~~~~~~al~~~p~~a~~~ 178 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEKEEKKAKYE 178 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhCCccCHHHH
Confidence 3445666666666666666655543
No 26
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=96.91 E-value=0.0024 Score=38.33 Aligned_cols=47 Identities=15% Similarity=0.142 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
.++|+.-+++++. -...+.|++|.++|+++++.+|+|......|...
T Consensus 54 ~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 54 YQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 3577888888877 3344568999999999999999999877777544
No 27
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.0013 Score=41.95 Aligned_cols=48 Identities=17% Similarity=0.124 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcC------CCcHHHHHHHHHhh
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEE------PSNELYQKSLEVAA 49 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~d------P~Ne~YkKsLe~a~ 49 (126)
.++|+.-+++||. -..++.|++|.++|++|++++ |+|...+..|..+.
T Consensus 54 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 54 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 3678888888887 345567899999999999999 99998888887654
No 28
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.89 E-value=0.0019 Score=42.63 Aligned_cols=44 Identities=16% Similarity=0.138 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.++|+.-|++||. -...+.+++|..+|++|++++|+|....-.|
T Consensus 33 ~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~l 91 (121)
T 1hxi_A 33 LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91 (121)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3577888888877 3334567888888888888888887555444
No 29
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.87 E-value=0.0017 Score=40.16 Aligned_cols=37 Identities=19% Similarity=0.125 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++|+. -...+.|++|.++|++|++.+|++.
T Consensus 33 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 84 (133)
T 2lni_A 33 PQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI 84 (133)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch
Confidence 456666776665 1123456777778888888777765
No 30
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.84 E-value=0.0034 Score=38.15 Aligned_cols=37 Identities=14% Similarity=0.084 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++++. -...+.|++|.++|+++++.+|++.
T Consensus 29 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 80 (131)
T 2vyi_A 29 EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH
Confidence 456666666665 1223456777777777777777765
No 31
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.83 E-value=0.0054 Score=43.26 Aligned_cols=20 Identities=25% Similarity=0.669 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhcCCCcH
Q 033160 20 YFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne 39 (126)
.|++|..+|++|++++|+|.
T Consensus 69 ~~~~A~~~~~~al~~~p~~~ 88 (208)
T 3urz_A 69 NYDKAYLFYKELLQKAPNNV 88 (208)
T ss_dssp CHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHHCCCCH
Confidence 35677777777777777765
No 32
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.81 E-value=0.0038 Score=40.15 Aligned_cols=20 Identities=10% Similarity=-0.006 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhcCCCcH
Q 033160 20 YFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne 39 (126)
.|++|.++|++|++.+|+|.
T Consensus 62 ~~~~A~~~~~~a~~~~~~~~ 81 (166)
T 1a17_A 62 CYGYALGDATRAIELDKKYI 81 (166)
T ss_dssp CHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHhCcccH
Confidence 34555555555555555543
No 33
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.73 E-value=0.00094 Score=42.82 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.|++|.++|++|++.+|+|.
T Consensus 40 ~~~~~~A~~~~~~al~~~p~~~ 61 (117)
T 3k9i_A 40 LGEYRKAEAVLANGVKQFPNHQ 61 (117)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCCHHHHHHHHHHHHHhCCCch
Confidence 4557778888888888888776
No 34
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.72 E-value=0.002 Score=45.35 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|+.|+. -...+.|++|.+||++|+.++|+|.
T Consensus 53 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 53 EEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 456666666665 2334556677777777777777665
No 35
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=96.70 E-value=0.0027 Score=40.60 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
.++|+.-|++||. -...+.|++|.++|++|++.+|+|..
T Consensus 43 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 43 YRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Confidence 3678888888887 34566789999999999999999874
No 36
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.69 E-value=0.0015 Score=41.47 Aligned_cols=45 Identities=20% Similarity=0.276 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHH
Q 033160 12 ALMDEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHM 56 (126)
Q Consensus 12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ 56 (126)
|..-...+.|++|.++|++|++.+|+|. .|+++|+++.+.++.|.
T Consensus 14 g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 14 AQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 3334455678999999999999999886 67777777766666664
No 37
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.69 E-value=0.0039 Score=39.32 Aligned_cols=21 Identities=19% Similarity=0.322 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|.++|+++++.+|+|.
T Consensus 79 ~~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 79 EDYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp TCHHHHHHHHHHHHHHTSCCH
T ss_pred ccHHHHHHHHHHHHhhCccCH
Confidence 457788888888888888775
No 38
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.68 E-value=0.01 Score=39.52 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCc-hhHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAP-ELHMEI 58 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAP-elH~ei 58 (126)
++.|++|..+|++|++++|+|. .|+++|++.-..+ .++.+|
T Consensus 76 ~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 76 IGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 4458999999999999999997 6777777765544 444443
No 39
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.004 Score=37.87 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
++|+.-+++||. -...+.|++|.++|++|++++|+|
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 71 (111)
T 2l6j_A 21 REAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA 71 (111)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 456666666666 222344677777777777777776
No 40
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.67 E-value=0.0045 Score=37.72 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 3 LDAISKLEEALM----------------DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 3 ~dAisKleeAL~----------------~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
++|+.-|++|+. -...+.|++|.++|++|++++|+|..
T Consensus 17 ~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~ 70 (99)
T 2kc7_A 17 ENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPA 70 (99)
T ss_dssp HHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 456666666665 12344577888888888888888764
No 41
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=96.67 E-value=0.0038 Score=43.91 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHH
Q 033160 16 EAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEI 58 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei 58 (126)
...+.|++|..+|++|++.+|+|. .|++++++.-..|+.|..+
T Consensus 47 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~l 110 (151)
T 3gyz_A 47 YNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHT 110 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHH
Confidence 345568999999999999999998 5556666655556555443
No 42
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=96.66 E-value=0.0027 Score=42.82 Aligned_cols=39 Identities=21% Similarity=0.115 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
|++.||.-+.+|.. .+|..+|.+|.++|.+++..+||..
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~ 52 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESV 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 47899999999998 9999999999999999999998655
No 43
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=96.65 E-value=0.0078 Score=40.07 Aligned_cols=59 Identities=17% Similarity=0.259 Sum_probs=44.7
Q ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-----HHhhcCchhHHHHHH
Q 033160 1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL-----EVAAKAPELHMEIHK 60 (126)
Q Consensus 1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL-----e~a~KAPelH~ei~k 60 (126)
|++.|+.-+.+|+. .+|..+|.+|.++|.+++..+|+.. -|..| +.-..|=+|...|.+
T Consensus 9 ~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~-~k~~l~~k~~eYl~RAE~Lk~~l~~ 79 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPK-SKDLIRAKFTEYLNRAEQLKKHLES 79 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47899999999998 8999999999999999999997544 33333 444566666655543
No 44
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.64 E-value=0.0024 Score=56.13 Aligned_cols=37 Identities=16% Similarity=0.218 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++||. -..++.|++|.++|+||++++|+|.
T Consensus 60 ~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~ 111 (723)
T 4gyw_A 60 QEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA 111 (723)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 456666666665 2233446666666777777776664
No 45
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=96.59 E-value=0.0029 Score=55.64 Aligned_cols=57 Identities=16% Similarity=0.334 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsL 45 (126)
.++|+.-+++||. -..++.|++|.++|++|++++|+|. .|+++|
T Consensus 25 ~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl 104 (723)
T 4gyw_A 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAI 104 (723)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4789999999998 3345678999999999999999986 788888
Q ss_pred HHhhcCchhHHHH
Q 033160 46 EVAAKAPELHMEI 58 (126)
Q Consensus 46 e~a~KAPelH~ei 58 (126)
++.-.-++.|..+
T Consensus 105 ~l~P~~~~a~~~L 117 (723)
T 4gyw_A 105 QINPAFADAHSNL 117 (723)
T ss_dssp HHCTTCHHHHHHH
T ss_pred HhCCCCHHHHHHH
Confidence 8877777777654
No 46
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=96.59 E-value=0.0048 Score=42.47 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
++|+.-++.||. -..++.|++|.++|++|++++|+|...+..|..+
T Consensus 105 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 105 PKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHH
Confidence 456666666666 3344557788888888888888887666666544
No 47
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=96.49 E-value=0.0072 Score=39.85 Aligned_cols=32 Identities=9% Similarity=0.006 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
+..|..-...+.|++|..+|++|+..+|+|..
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 53 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDAR 53 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHhCCccHH
Confidence 34444445566789999999999999999983
No 48
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=96.46 E-value=0.0062 Score=36.29 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPS--NELYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~--Ne~YkKsL 45 (126)
.++|+.-|+.|+. -...+.|++|.++|++|++.+|+ +......|
T Consensus 22 ~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l 82 (112)
T 2kck_A 22 YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAK 82 (112)
T ss_dssp HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHH
Confidence 3567777887776 22345588999999999999998 76555555
No 49
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.44 E-value=0.0097 Score=35.80 Aligned_cols=37 Identities=27% Similarity=0.417 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++++. -...+.|++|..+|+++++.+|++.
T Consensus 26 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 77 (125)
T 1na0_A 26 DEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA 77 (125)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH
Confidence 456666666665 1223457777777888877777765
No 50
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=96.42 E-value=0.0056 Score=43.17 Aligned_cols=44 Identities=16% Similarity=0.030 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.++|+.-|++||. -...+.|++|.++|++|++++|+|..-.-+|
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 128 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 4678888888887 3456679999999999999999998555444
No 51
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.42 E-value=0.0076 Score=41.00 Aligned_cols=21 Identities=19% Similarity=0.290 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|..+|++|++.+|++.
T Consensus 187 ~~~~~A~~~~~~al~~~~~~~ 207 (258)
T 3uq3_A 187 MSFPEAIADCNKAIEKDPNFV 207 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHhCHHHH
Confidence 345555556666666655554
No 52
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.37 E-value=0.0052 Score=37.87 Aligned_cols=45 Identities=24% Similarity=0.233 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
.++|+.-|++|+. -...+.|++|.++|+++++.+|+|......|.
T Consensus 66 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~ 125 (133)
T 2lni_A 66 FQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQ 125 (133)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 3678888888887 33445689999999999999999876555553
No 53
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.34 E-value=0.0068 Score=43.01 Aligned_cols=30 Identities=17% Similarity=0.368 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
.+.|++|.++|++|++.+|+|...+..|..
T Consensus 319 ~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 319 EEMYDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 344566666666666666666655555543
No 54
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=96.32 E-value=0.0098 Score=40.40 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 11 EALMDEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 11 eAL~~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.|..-...+.|++|..+|++|++.+|+|.
T Consensus 27 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~ 55 (148)
T 2vgx_A 27 LAFNQYQSGXYEDAHXVFQALCVLDHYDS 55 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCcccH
Confidence 33334455678999999999999999997
No 55
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.31 E-value=0.0092 Score=41.35 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 13 LMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 13 L~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
+..++.+.|++|.++|++|++++|+|...+..|...
T Consensus 188 ~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 188 EKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 336788899999999999999999999888777544
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=96.30 E-value=0.0082 Score=41.56 Aligned_cols=20 Identities=20% Similarity=0.403 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhcCCCcH
Q 033160 20 YFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne 39 (126)
.|++|.++|++|++.+|+|.
T Consensus 92 ~~~~A~~~~~~al~~~~~~~ 111 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYN 111 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCT
T ss_pred CHHHHHHHHHHHHhcCcccc
Confidence 34445555555555555444
No 57
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.29 E-value=0.0099 Score=36.05 Aligned_cols=45 Identities=24% Similarity=0.456 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
++|+.-+++++. -...+.|++|..+|++|++.+|+|......|-.
T Consensus 63 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 122 (131)
T 2vyi_A 63 AGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKI 122 (131)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 567777777776 344557899999999999999999876665543
No 58
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=96.27 E-value=0.0063 Score=40.04 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++.+..-...+.|++|..+|++|+..+|+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~ 51 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPERE 51 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH
Confidence 4455555566789999999999999999987
No 59
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.27 E-value=0.014 Score=34.30 Aligned_cols=29 Identities=21% Similarity=0.343 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 12 ALMDEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
|..-...+.|++|..+|++|++.+|+|..
T Consensus 16 a~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 44 (91)
T 1na3_A 16 GNAYYKQGDYDEAIEYYQKALELDPNNAE 44 (91)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 33344567799999999999999999873
No 60
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=96.24 E-value=0.0072 Score=41.03 Aligned_cols=38 Identities=21% Similarity=0.031 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+++||+-+.+|.. .+|..+|.+|.++|.+|+..+||..
T Consensus 16 ~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~ 60 (83)
T 2w2u_A 16 EEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGS 60 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSS
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 6889999999998 9999999999999999999988654
No 61
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=96.22 E-value=0.0093 Score=44.46 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 16 EAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+|+..|++|.+.|.++++++|++-
T Consensus 75 eAl~~~~kAL~l~n~~~e~~pd~~ 98 (159)
T 2hr2_A 75 EALHSADKALHYFNRRGELNQDEG 98 (159)
T ss_dssp HHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHHHHHHHhhhccccCCCchH
Confidence 444444444444444444499884
No 62
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=96.19 E-value=0.0099 Score=38.14 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
++|+.-+++|+. -...+.|++|.++|++|++.+|+|......+.+
T Consensus 64 ~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 123 (166)
T 1a17_A 64 GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 123 (166)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 567777777776 344567899999999999999999855544433
No 63
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=96.19 E-value=0.0068 Score=40.54 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhcCCCcH
Q 033160 20 YFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne 39 (126)
.|++|..+|++|++.+|+|.
T Consensus 130 ~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 130 NYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp CHHHHHHHHHHHHHTCCTTS
T ss_pred cHHHHHHHHHHHHhhCCCCc
Confidence 34555555555555555543
No 64
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=96.07 E-value=0.015 Score=34.89 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
.++|+.-|++++. -...+.|++|..+|+++++.+|++...+..|-.+
T Consensus 59 ~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 120 (125)
T 1na0_A 59 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120 (125)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 3567777777776 2234468999999999999999998777766443
No 65
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=96.04 E-value=0.0064 Score=48.88 Aligned_cols=21 Identities=5% Similarity=0.129 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|..||++|+++||+|-
T Consensus 180 g~~~eAl~~~~kal~ldP~~~ 200 (382)
T 2h6f_A 180 RDPSQELEFIADILNQDAKNY 200 (382)
T ss_dssp TCCTTHHHHHHHHHHHCTTCH
T ss_pred cCHHHHHHHHHHHHHhCccCH
Confidence 334555555555555555553
No 66
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=96.00 E-value=0.012 Score=41.65 Aligned_cols=22 Identities=23% Similarity=0.178 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.|++|.++|+++++.+|+|.
T Consensus 285 ~~~~~~A~~~~~~~~~~~~~~~ 306 (359)
T 3ieg_A 285 DEKPVEAIRICSEVLQMEPDNV 306 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH
T ss_pred ccCHHHHHHHHHHHHHhCcccH
Confidence 4457888888888888888776
No 67
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.96 E-value=0.019 Score=39.49 Aligned_cols=43 Identities=9% Similarity=0.053 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIHK 60 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~k 60 (126)
.+.|++|..+|++|++.+|+|. .|+++|++.-..++++..+.+
T Consensus 101 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 164 (198)
T 2fbn_A 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYEL 164 (198)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence 3458999999999999999986 567777776666666655544
No 68
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.91 E-value=0.013 Score=46.41 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|.++|++|++++|+|.
T Consensus 287 g~~~~A~~~~~~al~~~p~~~ 307 (370)
T 1ihg_A 287 SDWQGAVDSCLEALEIDPSNT 307 (370)
T ss_dssp TCHHHHHHHHHHHHTTCTTCH
T ss_pred cCHHHHHHHHHHHHHhCchhH
Confidence 446778888888888888775
No 69
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.89 E-value=0.011 Score=46.94 Aligned_cols=54 Identities=17% Similarity=0.143 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHM 56 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ 56 (126)
++|+.-+++||. -..++.|++|.++|++|++++|+|...+..|..+.+.=+-..
T Consensus 290 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~ 358 (370)
T 1ihg_A 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQK 358 (370)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 577888888887 344556899999999999999999988888876644333333
No 70
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.88 E-value=0.024 Score=34.38 Aligned_cols=31 Identities=13% Similarity=0.095 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++.|..-...+.|++|.++|++|++.+|+|.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 34 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGK 34 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH
Confidence 4555555667789999999999999999985
No 71
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=95.88 E-value=0.013 Score=47.02 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHH---------------HHHHHH-HHHHHHHHHHHHhcCCCcH---------------------HHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEY-FNKATLYFQQAVDEEPSNE---------------------LYQKS 44 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~-f~kA~~~FqkAvd~dP~Ne---------------------~YkKs 44 (126)
.++|+.-++.||. -..++. |++|..+|++|+.++|+|- .|+++
T Consensus 113 ~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~ka 192 (382)
T 2h6f_A 113 SERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADI 192 (382)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4678888888888 222343 9999999999999999986 78888
Q ss_pred HHHhhcCchhHHHHH
Q 033160 45 LEVAAKAPELHMEIH 59 (126)
Q Consensus 45 Le~a~KAPelH~ei~ 59 (126)
|++.-+-++.|..+.
T Consensus 193 l~ldP~~~~a~~~lg 207 (382)
T 2h6f_A 193 LNQDAKNYHAWQHRQ 207 (382)
T ss_dssp HHHCTTCHHHHHHHH
T ss_pred HHhCccCHHHHHHHH
Confidence 888777777665443
No 72
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.86 E-value=0.017 Score=37.57 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQKSLEVAA 49 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~ 49 (126)
+.|++|..+|++|++.+|+|.....++..-.
T Consensus 60 g~~~~A~~~~~~al~l~P~~~~~~~n~~~~~ 90 (104)
T 2v5f_A 60 GDLDKALLLTKKLLELDPEHQRANGNLKYFE 90 (104)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHhhHHHHH
Confidence 4589999999999999999998888876443
No 73
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.80 E-value=0.013 Score=45.07 Aligned_cols=46 Identities=28% Similarity=0.277 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
++|+.-++.||. -..++.|++|..+|++|++++|+|......|..+
T Consensus 213 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 213 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 567777777777 3344568999999999999999998766666443
No 74
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.78 E-value=0.021 Score=39.47 Aligned_cols=24 Identities=8% Similarity=-0.003 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELY 41 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~Y 41 (126)
.+.|++|.++|++|++.+|+|..+
T Consensus 124 ~g~~~~A~~~~~~a~~~~~~~~~~ 147 (275)
T 1xnf_A 124 GGRDKLAQDDLLAFYQDDPNDPFR 147 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred hccHHHHHHHHHHHHHhCCCChHH
Confidence 345777788888888888877743
No 75
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.75 E-value=0.015 Score=49.42 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH--------------------HHHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE--------------------LYQKSLE 46 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne--------------------~YkKsLe 46 (126)
.++|+.-|++||. -...+.|++|.++|++|++++|+|. .|+++|+
T Consensus 449 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~ 528 (681)
T 2pzi_A 449 VAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWS 528 (681)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 3678888888887 3344568999999999999999885 4666666
Q ss_pred HhhcCchhHHHHH
Q 033160 47 VAAKAPELHMEIH 59 (126)
Q Consensus 47 ~a~KAPelH~ei~ 59 (126)
+.-..++.|..+=
T Consensus 529 ~~P~~~~a~~~lg 541 (681)
T 2pzi_A 529 TNDGVISAAFGLA 541 (681)
T ss_dssp HCTTCHHHHHHHH
T ss_pred hCCchHHHHHHHH
Confidence 6656666665443
No 76
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=95.75 E-value=0.018 Score=44.35 Aligned_cols=42 Identities=19% Similarity=0.263 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIH 59 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~ 59 (126)
++.|++|.++|++|++++|+|. .|+++|++.-.-++.+..+-
T Consensus 209 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 271 (336)
T 1p5q_A 209 LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLA 271 (336)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3458999999999999999986 56777777666666655543
No 77
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.70 E-value=0.032 Score=44.89 Aligned_cols=18 Identities=17% Similarity=0.099 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 033160 19 EYFNKATLYFQQAVDEEP 36 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP 36 (126)
+.|++|.++|++|++++|
T Consensus 235 g~~~~A~~~~~~al~~~p 252 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDR 252 (474)
T ss_dssp HHHHHHHHHHHHHHHHCG
T ss_pred chHHHHHHHHHHHHHhCC
Confidence 668888888888888888
No 78
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=95.70 E-value=0.02 Score=46.74 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLE 46 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe 46 (126)
++|+.-+++||. -...+.|++|.++|++|++++|+|. .|+++|+
T Consensus 23 ~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~ 102 (477)
T 1wao_1 23 ENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVK 102 (477)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777777777 2234557788888888888888775 5566666
Q ss_pred HhhcCchhHHHH
Q 033160 47 VAAKAPELHMEI 58 (126)
Q Consensus 47 ~a~KAPelH~ei 58 (126)
+.-..++.+..+
T Consensus 103 ~~p~~~~~~~~l 114 (477)
T 1wao_1 103 VKPHDKDAKMKY 114 (477)
T ss_dssp HSTTCTTHHHHH
T ss_pred hCCCCHHHHHHH
Confidence 655555555443
No 79
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=95.69 E-value=0.013 Score=41.58 Aligned_cols=38 Identities=21% Similarity=0.066 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++|+.-|++||. -.....+++|..+|++|++.+|+|.
T Consensus 21 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~ 73 (217)
T 2pl2_A 21 YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL 73 (217)
T ss_dssp HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 3577778888777 2334568899999999999999885
No 80
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.68 E-value=0.01 Score=47.88 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-+++||. -...+.|++|.++|++|++.+|+|.
T Consensus 40 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 91 (568)
T 2vsy_A 40 TAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP 91 (568)
T ss_dssp HHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 456666666665 2334457788888888888888776
No 81
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=95.65 E-value=0.0083 Score=41.77 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
.++.|++|.++|++|++++|+|+.-++.|..
T Consensus 233 ~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~ 263 (272)
T 3u4t_A 233 INRDKVKADAAWKNILALDPTNKKAIDGLKM 263 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHhcCccHHHHHHHhhh
Confidence 3466899999999999999999988877743
No 82
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.65 E-value=0.0054 Score=38.76 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHhh
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPS-----NELYQKSLEVAA 49 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~-----Ne~YkKsLe~a~ 49 (126)
.++|+.-|++||. -...+.|++|.++|++|++.+|+ ++.....|..+.
T Consensus 59 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 59 PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 3578888888887 34556789999999999999998 565555555443
No 83
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.64 E-value=0.039 Score=34.34 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhcCCCc
Q 033160 19 EYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~N 38 (126)
+.|++|.++|+++++.+|++
T Consensus 53 ~~~~~A~~~~~~~~~~~p~~ 72 (129)
T 2xev_A 53 RNFQLAEAQFRDLVSRYPTH 72 (129)
T ss_dssp TCHHHHHHHHHHHHHHCTTS
T ss_pred ccHHHHHHHHHHHHHHCCCC
Confidence 45788888888888888887
No 84
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.63 E-value=0.018 Score=39.89 Aligned_cols=22 Identities=18% Similarity=0.301 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.|++|.++|++|++.+|+|.
T Consensus 55 ~~~~~~A~~~~~~al~~~p~~~ 76 (228)
T 4i17_A 55 IKKYKEAADYFDIAIKKNYNLA 76 (228)
T ss_dssp TTCHHHHHHHHHHHHHTTCSHH
T ss_pred hhcHHHHHHHHHHHHHhCcchH
Confidence 3344555555555555555443
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.58 E-value=0.041 Score=39.11 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQKSLEVAA 49 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~ 49 (126)
+.|++|..+|+++++.+|+++.+++++.+..
T Consensus 209 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~ 239 (261)
T 3qky_A 209 ERYRRAVELYERLLQIFPDSPLLRTAEELYT 239 (261)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 7789999999999999999998888876544
No 86
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.58 E-value=0.017 Score=46.48 Aligned_cols=44 Identities=18% Similarity=0.080 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.++|+.-+++||. -...+.|++|.++|++|++.+|+|.....+|
T Consensus 73 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 131 (568)
T 2vsy_A 73 HAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131 (568)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3577888888877 2334557899999999999999887555444
No 87
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=95.56 E-value=0.02 Score=40.42 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
++|+.-|++|+. -...+.|++|.++|++|++++|+|......|-
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 311 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHH
Confidence 456666666665 33455677777788888887777765555443
No 88
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.55 E-value=0.0095 Score=40.46 Aligned_cols=23 Identities=13% Similarity=0.372 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..+.|++|.++|+++++.+|++.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~ 193 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHA 193 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCH
T ss_pred HcCCHHHHHHHHHHHHHhCcccH
Confidence 34455666666666666666655
No 89
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.55 E-value=0.01 Score=39.22 Aligned_cols=37 Identities=22% Similarity=0.112 Sum_probs=28.8
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
..+|+.-|++||. ....+.|++|.++|+++++.+|++
T Consensus 25 ~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4678888888888 344566788899999999988883
No 90
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=95.52 E-value=0.034 Score=40.25 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.|++|.++|++|++.+|++.
T Consensus 264 ~g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCH
T ss_pred cCCHHHHHHHHHHHHHhCCCcH
Confidence 3456677777777777777665
No 91
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=95.49 E-value=0.006 Score=38.60 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++|+.-|++||. -..++.|++|.++|++|+++.|++.
T Consensus 23 ~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 4688999999988 4456678999999999999988654
No 92
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=95.45 E-value=0.033 Score=34.72 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
..+.+++|.++|+++++.+|+++....++..
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~ 118 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVAQER 118 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 3456899999999999999999877776643
No 93
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.43 E-value=0.018 Score=34.89 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 8 KLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 8 KleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
-+..+..-...+.|++|.++|++|++.+|+|.....+|
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 44 (111)
T 2l6j_A 7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNK 44 (111)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 33444444556679999999999999999997544444
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.42 E-value=0.067 Score=32.05 Aligned_cols=39 Identities=23% Similarity=0.319 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELY 41 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Y 41 (126)
++|+.-|++++. -...+.+++|..+|+++++.+|++...
T Consensus 18 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 71 (136)
T 2fo7_A 18 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHH
Confidence 567777777765 223446788888888888888887633
No 95
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.40 E-value=0.058 Score=34.41 Aligned_cols=22 Identities=14% Similarity=0.218 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.|++|.++|+++++.+|+|.
T Consensus 89 ~~~~~~A~~~~~~~~~~~~~~~ 110 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEANPINF 110 (186)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCH
T ss_pred hcCHHHHHHHHHHHHhcCcHhH
Confidence 3456677777777777777665
No 96
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.38 E-value=0.041 Score=37.30 Aligned_cols=37 Identities=24% Similarity=0.269 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++++. -...+.|++|.++|+++++.+|+|.
T Consensus 74 ~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 125 (243)
T 2q7f_A 74 ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG 125 (243)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH
Confidence 456666666665 2233456777777777777777665
No 97
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.38 E-value=0.019 Score=42.86 Aligned_cols=47 Identities=26% Similarity=0.287 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 2 ILDAISKLEEALMDE-----------------AKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 2 i~dAisKleeAL~~~-----------------A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
++++|.=||+.+... -+..|++|.+||+++|+.||+|..=+..+++.
T Consensus 51 ~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 51 IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 678888888888732 12358999999999999999998554444433
No 98
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=95.35 E-value=0.043 Score=40.24 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|.++|++|++.+|+|.
T Consensus 227 g~~~~A~~~~~~al~~~p~~~ 247 (365)
T 4eqf_A 227 GEFNRAIDAFNAALTVRPEDY 247 (365)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 345555555555555555554
No 99
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=95.30 E-value=0.023 Score=42.77 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
..+.|++|.++|++|++.+|+|..-.
T Consensus 212 ~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 212 AQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 34456777777777777777766433
No 100
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.30 E-value=0.016 Score=43.07 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhcCCCc
Q 033160 21 FNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP~N 38 (126)
|++|..+|++|++.+|+|
T Consensus 219 ~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 219 FDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp TTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHhhCcCC
Confidence 344444444444444443
No 101
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=95.27 E-value=0.03 Score=41.61 Aligned_cols=20 Identities=25% Similarity=0.149 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHhcCCCcH
Q 033160 20 YFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+++|.++|++|++.+|++.
T Consensus 184 ~~~~A~~~~~~al~~~p~~~ 203 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLDPNFL 203 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHhcCCCcH
Confidence 35677777777777777763
No 102
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.24 E-value=0.024 Score=38.49 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcC------CCcHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEE------PSNELYQKSLEVA 48 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~d------P~Ne~YkKsLe~a 48 (126)
.++|+.-|++||. -...+.+++|.++|++|++.+ |+|...+..|..+
T Consensus 189 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 3567777777776 334566899999999999999 9998887777654
No 103
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.19 E-value=0.029 Score=33.25 Aligned_cols=23 Identities=13% Similarity=0.349 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
.+.|++|..+|++|++.+|++..
T Consensus 19 ~~~~~~A~~~~~~a~~~~~~~~~ 41 (112)
T 2kck_A 19 AGNYTESIDLFEKAIQLDPEESK 41 (112)
T ss_dssp SCCHHHHHHHHHHHHHHCCCCHH
T ss_pred hhhHHHHHHHHHHHHHhCcCCHH
Confidence 45689999999999999999873
No 104
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=95.11 E-value=0.023 Score=45.80 Aligned_cols=46 Identities=17% Similarity=0.236 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
++|+.-+++||. -..++.|++|..+|++|++++|+|......|..+
T Consensus 334 ~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 334 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 567777777777 3344568899999999999999998666666544
No 105
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=95.02 E-value=0.073 Score=36.13 Aligned_cols=41 Identities=17% Similarity=0.168 Sum_probs=33.1
Q ss_pred HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 4 DAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 4 dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
-|+.-+.+|+. .+|+.+|.+|.++|.+++..+||... |..|
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~-k~~l 62 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTK-RCNL 62 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHH-HHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHH-HHHH
Confidence 46777777877 89999999999999999999997653 4443
No 106
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=95.01 E-value=0.04 Score=41.22 Aligned_cols=45 Identities=20% Similarity=0.307 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
++|+.-+++|+. -...+.|++|.++|++|++++|+|......|..
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 371 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456666666654 223345777778888888888877766666643
No 107
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.96 E-value=0.061 Score=32.57 Aligned_cols=29 Identities=14% Similarity=0.283 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
..+.|++|.++|+++++.+|+ ......|.
T Consensus 91 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~ 119 (131)
T 1elr_A 91 KEEKYKDAIHFYNKSLAEHRT-PDVLKKCQ 119 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCCC-HHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 345678889999999998884 54444443
No 108
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.96 E-value=0.11 Score=39.68 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|..+|++|++.+|+|.
T Consensus 442 ~~~~~A~~~~~~a~~~~p~~~ 462 (537)
T 3fp2_A 442 EKFNAAIKLLTKACELDPRSE 462 (537)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHHhCCCCH
Confidence 788888888888888888876
No 109
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.94 E-value=0.035 Score=44.70 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH---------------------HHHHHHHHhhcCchhHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE---------------------LYQKSLEVAAKAPELHMEIH 59 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne---------------------~YkKsLe~a~KAPelH~ei~ 59 (126)
++.|++|..+|++|++++|+|. .|+++|++.-.-++.+.++-
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIS 392 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3458999999999999999996 55666666555555555443
No 110
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.93 E-value=0.061 Score=37.84 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|.++|+++++.+|++.
T Consensus 186 ~~~~~A~~~~~~~~~~~~~~~ 206 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRPDDA 206 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH
T ss_pred ccHHHHHHHHHHHHHhCCCcH
Confidence 446677777777777777654
No 111
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.91 E-value=0.069 Score=36.78 Aligned_cols=23 Identities=13% Similarity=0.166 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
.+.+++|.++|+++++.+|++..
T Consensus 188 ~g~~~~A~~~~~~~~~~~~~~~~ 210 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGGGQNAR 210 (252)
T ss_dssp TTCHHHHHHHHHHHHTTSCCCHH
T ss_pred cCCHHHHHHHHHHHHHhCcCcHH
Confidence 34467777777777777776653
No 112
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=94.90 E-value=0.096 Score=31.68 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..+.|++|..+|++|++.+|+|.
T Consensus 16 ~~~~~~~A~~~~~~a~~~~~~~~ 38 (131)
T 1elr_A 16 KKKDFDTALKHYDKAKELDPTNM 38 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhcCHHHHHHHHHHHHhcCCccH
Confidence 34455666666666666666554
No 113
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.82 E-value=0.091 Score=36.97 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.|++|.++|++|++.+|+|.
T Consensus 172 ~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 172 TNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCH
T ss_pred HhhHHHHHHHHHHHHHhCCCCh
Confidence 3446777777778887777775
No 114
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.80 E-value=0.0091 Score=39.92 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
..+.|++|.++|++|++.+|+|..+...|
T Consensus 56 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l 84 (177)
T 2e2e_A 56 WQNDYSNSLLAYRQALQLRGENAELYAAL 84 (177)
T ss_dssp HTTCHHHHHHHHHHHHHHHCSCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34557788888888888888776544443
No 115
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.74 E-value=0.013 Score=45.24 Aligned_cols=28 Identities=18% Similarity=0.286 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
+.|++|..+|++|++++|+|...+..|.
T Consensus 278 g~~~~A~~~l~~al~l~p~~~~a~~~L~ 305 (338)
T 2if4_A 278 GQMDSARDDFRKAQKYAPDDKAIRRELR 305 (338)
T ss_dssp TCHHHHHHHHHHTTC-------------
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 3456666666666666666655555543
No 116
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.72 E-value=0.025 Score=38.28 Aligned_cols=21 Identities=10% Similarity=0.245 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|.++|++|++.+|++.
T Consensus 51 g~~~~A~~~~~~al~~~~~~~ 71 (213)
T 1hh8_A 51 KNMTEAEKAFTRSINRDKHLA 71 (213)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHhCccch
Confidence 344555555555555555543
No 117
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=94.56 E-value=0.072 Score=40.06 Aligned_cols=38 Identities=21% Similarity=0.132 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHH----------HHH-------HHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM----------DEA-------KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~----------~~A-------~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++|+.-|++++. ..+ .+.|++|..+|+++++.+|+|.
T Consensus 146 ~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~ 200 (291)
T 3mkr_A 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTL 200 (291)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcH
Confidence 3577788888776 122 1578999999999999999987
No 118
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.46 E-value=0.051 Score=42.39 Aligned_cols=28 Identities=14% Similarity=0.138 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.+.+++|.++|+++++++|+|......|
T Consensus 563 ~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3455667777777777777666555544
No 119
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=94.45 E-value=0.084 Score=37.11 Aligned_cols=40 Identities=18% Similarity=0.073 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
++|+.-|++++. -...+.|++|.++|++|++.+|+|....
T Consensus 189 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 189 DSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 566666777665 2234568899999999999999886433
No 120
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=94.44 E-value=0.0069 Score=49.88 Aligned_cols=61 Identities=25% Similarity=0.333 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-----HHhhcCchhHHHHHHh
Q 033160 1 MILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL-----EVAAKAPELHMEIHKH 61 (126)
Q Consensus 1 Mi~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL-----e~a~KAPelH~ei~kq 61 (126)
|++.|+.-+.+|+. .+|..+|.+|.+||.+|+..++.|+..+..+ |.-..|=+|...+.+.
T Consensus 7 ~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~ 79 (444)
T 2zan_A 7 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKK 79 (444)
T ss_dssp -------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 56788888888888 8999999999999999999886666544433 4445666666555543
No 121
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=94.43 E-value=0.06 Score=45.71 Aligned_cols=57 Identities=11% Similarity=0.040 Sum_probs=43.5
Q ss_pred HHHHHHHHHHH--------H---------------HHHHHHHHHHHHHHHHHHhcCCCcH--------------------
Q 033160 3 LDAISKLEEAL--------M---------------DEAKEYFNKATLYFQQAVDEEPSNE-------------------- 39 (126)
Q Consensus 3 ~dAisKleeAL--------~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne-------------------- 39 (126)
++|+.-|++|| . -...+.|++|.++|++|++.+|+|.
T Consensus 408 ~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 487 (681)
T 2pzi_A 408 VQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSAT 487 (681)
T ss_dssp HHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 67888899998 3 2234558999999999999999995
Q ss_pred -HHHHHHHHhhcCchhHHHHH
Q 033160 40 -LYQKSLEVAAKAPELHMEIH 59 (126)
Q Consensus 40 -~YkKsLe~a~KAPelH~ei~ 59 (126)
.|+++|++.-..++.|..+=
T Consensus 488 ~~~~~al~l~P~~~~~~~~lg 508 (681)
T 2pzi_A 488 KHFTEVLDTFPGELAPKLALA 508 (681)
T ss_dssp HHHHHHHHHSTTCSHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHH
Confidence 66777777766777765543
No 122
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=94.33 E-value=0.022 Score=43.94 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|..+|++|++++|+|.
T Consensus 244 g~~~~A~~~~~~al~~~p~~~ 264 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNP 264 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCH
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 347899999999999999997
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.25 E-value=0.15 Score=37.67 Aligned_cols=19 Identities=16% Similarity=0.176 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHh-cCCCcH
Q 033160 21 FNKATLYFQQAVD-EEPSNE 39 (126)
Q Consensus 21 f~kA~~~FqkAvd-~dP~Ne 39 (126)
+++|..+|++|++ .+|+|.
T Consensus 80 ~~~A~~~~~rAl~~~~p~~~ 99 (308)
T 2ond_A 80 SDEAANIYERAISTLLKKNM 99 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCH
T ss_pred hHHHHHHHHHHHHHhCcccH
Confidence 3788888888888 688886
No 124
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=94.20 E-value=0.03 Score=35.17 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++|+.-|++||. -...+.+++|..+|++|++++|++.
T Consensus 35 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 35 FDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 3678888888887 3445678999999999999998653
No 125
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.15 E-value=0.073 Score=39.04 Aligned_cols=38 Identities=21% Similarity=0.287 Sum_probs=29.8
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++|+.-|++||. -...+.|++|.++|++|++.+|+|.
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 133 (365)
T 4eqf_A 81 LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNL 133 (365)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH
Confidence 4678888888887 2334568899999999999999876
No 126
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=94.14 E-value=0.043 Score=40.88 Aligned_cols=21 Identities=14% Similarity=0.113 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|..+|++|++.+|+|.
T Consensus 131 g~~~~A~~~~~~al~~~P~~~ 151 (287)
T 3qou_A 131 SNYTDALPLLXDAWQLSNQNG 151 (287)
T ss_dssp TCHHHHHHHHHHHHHHTTSCH
T ss_pred CCHHHHHHHHHHHHHhCCcch
Confidence 344445555555555555444
No 127
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=94.13 E-value=0.089 Score=34.87 Aligned_cols=40 Identities=25% Similarity=0.249 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELY 41 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Y 41 (126)
.++|+.-|++++. -...+.|++|.++|++|++.+|+|...
T Consensus 24 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 78 (225)
T 2vq2_A 24 YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 3567777777766 223445788888888888888877543
No 128
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.99 E-value=0.12 Score=38.70 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.|++|.++|+++++.+|+|.
T Consensus 108 g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 108 GKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp TCHHHHHHHHHHHHTSCCCHH
T ss_pred CCHHHHHHHHHHHHhcCCCCh
Confidence 345666666666666666654
No 129
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=93.99 E-value=0.061 Score=37.02 Aligned_cols=43 Identities=19% Similarity=-0.008 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
++|+.-|++++. -...+.+++|.++|+++++.+|+|..++.-|
T Consensus 192 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 249 (252)
T 2ho1_A 192 VPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEFQ 249 (252)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 456666666654 3445678999999999999999999887655
No 130
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=93.97 E-value=0.069 Score=43.54 Aligned_cols=47 Identities=15% Similarity=0.118 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
.++|+.-+++||. -..++.|++|.++|++|++.+|+|......|..+
T Consensus 56 ~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 56 YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3678888888887 3456679999999999999999998666665444
No 131
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.091 Score=39.60 Aligned_cols=46 Identities=22% Similarity=0.258 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA 48 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a 48 (126)
++|+.-|++|+. -...+.+++|.++|++|++.+|+|.....+|...
T Consensus 432 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 492 (514)
T 2gw1_A 432 IEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492 (514)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 567777777766 3344568899999999999999988776666433
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.87 E-value=0.077 Score=39.46 Aligned_cols=37 Identities=11% Similarity=-0.003 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++||. -..++.|++|..+|++|++++|+|.
T Consensus 21 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~ 72 (281)
T 2c2l_A 21 PEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV 72 (281)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH
Confidence 577888888887 3345568888899999999999886
No 133
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=93.77 E-value=0.1 Score=39.58 Aligned_cols=46 Identities=13% Similarity=0.029 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHH-----HHH--------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Q 033160 2 ILDAISKLEEALM-----DEA--------------KEYFNKATLYFQQAVDEEPSNELYQKSLEV 47 (126)
Q Consensus 2 i~dAisKleeAL~-----~~A--------------~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~ 47 (126)
.++|+.-|+.||. ..+ +..|++|.++|++|+.++|++....++++.
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~ 414 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDK 414 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4789999999987 110 123689999999999999999766655543
No 134
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=93.62 E-value=0.074 Score=35.94 Aligned_cols=38 Identities=13% Similarity=0.132 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++|+.-+++|+. -...+.|++|.++|++|++..|+|.
T Consensus 53 ~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~ 105 (213)
T 1hh8_A 53 MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ 105 (213)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence 3578888888887 2345668999999999999999875
No 135
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.49 E-value=0.1 Score=35.25 Aligned_cols=21 Identities=5% Similarity=-0.157 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCc
Q 033160 18 KEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~N 38 (126)
.+.|++|..+|+++++.+|++
T Consensus 121 ~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 121 VGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp TTCHHHHHHHHHHHHTTCTTT
T ss_pred cccHHHHHHHHHHHHHhCccc
Confidence 345666666666666666653
No 136
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.46 E-value=0.2 Score=33.17 Aligned_cols=22 Identities=14% Similarity=0.153 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHhcCC-CcHH
Q 033160 19 EYFNKATLYFQQAVDEEP-SNEL 40 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP-~Ne~ 40 (126)
+.|++|.++|+++++.+| ++..
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHH
Confidence 345555555555555555 4443
No 137
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=93.44 E-value=0.096 Score=38.94 Aligned_cols=42 Identities=7% Similarity=0.032 Sum_probs=27.3
Q ss_pred HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCc--HHHHHHH
Q 033160 4 DAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSN--ELYQKSL 45 (126)
Q Consensus 4 dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~N--e~YkKsL 45 (126)
+|+.-|++||. -...+.|++|.++|++++..+|++ ..-+++|
T Consensus 203 ~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l 261 (287)
T 3qou_A 203 PEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF 261 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred ccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence 46666777766 234456778888888888888877 4444443
No 138
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=93.41 E-value=0.1 Score=41.93 Aligned_cols=20 Identities=20% Similarity=0.147 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHhcCCC
Q 033160 18 KEYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~ 37 (126)
.+.|++|.+||++|++++|+
T Consensus 150 ~g~~~~A~~~~~~al~~~p~ 169 (474)
T 4abn_A 150 KGDVTSAHTCFSGALTHCKN 169 (474)
T ss_dssp HTCHHHHHHHHHHHHTTCCC
T ss_pred cCCHHHHHHHHHHHHhhCCC
Confidence 34456666666666666665
No 139
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=93.39 E-value=0.13 Score=36.45 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.+.|++|..+|+++++.+|+|.....++
T Consensus 110 ~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 137 (261)
T 3qky_A 110 QTDTRKAIEAFQLFIDRYPNHELVDDAT 137 (261)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred chhHHHHHHHHHHHHHHCcCchhHHHHH
Confidence 6789999999999999999997555444
No 140
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=93.33 E-value=0.16 Score=32.29 Aligned_cols=42 Identities=17% Similarity=0.114 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKS 44 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKs 44 (126)
++|+.-|++++. -...+.|++|.++|+++++.+|++......
T Consensus 93 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 149 (186)
T 3as5_A 93 DLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRA 149 (186)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHH
Confidence 456666666665 233456899999999999999998643333
No 141
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=93.30 E-value=0.13 Score=37.19 Aligned_cols=38 Identities=18% Similarity=0.202 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
++|+.-|++|+. -...+.|++|.++|++|++.+|+|..
T Consensus 81 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 133 (368)
T 1fch_A 81 PNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 133 (368)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHH
Confidence 567777777776 22345577888888888888887763
No 142
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.21 E-value=0.079 Score=36.75 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|+.|+. -...+.|++|.++|++|++.+|+|.
T Consensus 91 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 142 (272)
T 3u4t_A 91 SLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP 142 (272)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred HHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence 456666666666 2334556777777777777777765
No 143
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=93.06 E-value=0.039 Score=37.40 Aligned_cols=23 Identities=17% Similarity=0.143 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELY 41 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~Y 41 (126)
.+.|++|..+|++++..+| |..|
T Consensus 53 ~g~~~~A~~~~~~a~~~~p-~~~~ 75 (176)
T 2r5s_A 53 TKQFELAQELLATIPLEYQ-DNSY 75 (176)
T ss_dssp TTCHHHHHHHHTTCCGGGC-CHHH
T ss_pred CCCHHHHHHHHHHhhhccC-ChHH
Confidence 3456777777777777777 5433
No 144
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.89 E-value=0.11 Score=36.64 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM------------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~------------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++++. -...+.|++|.++|+++++.+|+|.
T Consensus 21 ~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~ 75 (225)
T 2yhc_A 21 RQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP 75 (225)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC
Confidence 577888888775 1123557899999999999999986
No 145
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=92.85 E-value=0.35 Score=35.70 Aligned_cols=16 Identities=13% Similarity=0.401 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhcCC
Q 033160 21 FNKATLYFQQAVDEEP 36 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP 36 (126)
+++|..+|++|++.+|
T Consensus 150 ~~~A~~~~~~a~~~~p 165 (308)
T 2ond_A 150 IKSGRMIFKKAREDAR 165 (308)
T ss_dssp HHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHhcCC
Confidence 4444444555544444
No 146
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=92.47 E-value=0.28 Score=38.21 Aligned_cols=22 Identities=9% Similarity=0.089 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+.+++|.++|+++++.+|+|.
T Consensus 529 ~g~~~~A~~~~~~~~~~~p~~~ 550 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLSTNDA 550 (597)
T ss_dssp TTCHHHHHHHHHHHHHHSSCCH
T ss_pred hcCHHHHHHHHHHHHHhCCCCh
Confidence 3457899999999999999886
No 147
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=92.41 E-value=0.21 Score=38.13 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
++|+.-|++|+. -...+.+++|.++|++|++++|+++.....+.
T Consensus 445 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 503 (537)
T 3fp2_A 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHh
Confidence 567777777776 34456789999999999999999987665554
No 148
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.15 E-value=0.27 Score=37.03 Aligned_cols=37 Identities=22% Similarity=0.103 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM--------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~--------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-|++||. -...+.|++|.++|++|++.+|+|.
T Consensus 23 ~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 73 (514)
T 2gw1_A 23 DDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS 73 (514)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH
T ss_pred HHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH
Confidence 567777777776 3335668888899999999999885
No 149
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.00 E-value=0.47 Score=33.33 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
+.+++|..+|+++++.+|++....
T Consensus 110 ~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 110 QQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred HHHHHHHHHHHHHHHHCcCChhHH
Confidence 478999999999999999997443
No 150
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.97 E-value=0.21 Score=37.06 Aligned_cols=25 Identities=8% Similarity=0.084 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc
Q 033160 14 MDEAKEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 14 ~~~A~~~f~kA~~~FqkAvd~dP~N 38 (126)
.......|++|.+||+||++++|++
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l~p~~ 44 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEISHTM 44 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCC
Confidence 3455678999999999999999993
No 151
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=91.86 E-value=0.29 Score=29.17 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 3 LDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 3 ~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
++|+.-|++++. -...+.|++|.++|+++++.+|++..
T Consensus 52 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 104 (136)
T 2fo7_A 52 DEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104 (136)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence 567777777765 12234589999999999999998753
No 152
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=91.15 E-value=0.28 Score=30.19 Aligned_cols=18 Identities=17% Similarity=0.301 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 033160 19 EYFNKATLYFQQAVDEEP 36 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP 36 (126)
..|++|.++|++|++..+
T Consensus 63 g~~~~A~~~~~~a~~~~~ 80 (164)
T 3ro3_A 63 GEFETASEYYKKTLLLAR 80 (164)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 345666666666666543
No 153
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=91.10 E-value=0.19 Score=31.01 Aligned_cols=14 Identities=21% Similarity=0.301 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHhc
Q 033160 21 FNKATLYFQQAVDE 34 (126)
Q Consensus 21 f~kA~~~FqkAvd~ 34 (126)
|++|.++|++|++.
T Consensus 105 ~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 105 YEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555544
No 154
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=90.96 E-value=0.34 Score=35.36 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHH---hcCCCcH
Q 033160 18 KEYFNKATLYFQQAV---DEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAv---d~dP~Ne 39 (126)
.+.|++|.+||++|+ +..|++.
T Consensus 168 ~~~~~~A~~~~~kal~~~~~~~~~~ 192 (293)
T 2qfc_A 168 NGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred cCCHHHHHHHHHHHHHHHHhcCccc
Confidence 345678888888888 5566643
No 155
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=90.13 E-value=0.28 Score=41.22 Aligned_cols=40 Identities=13% Similarity=0.100 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHhcCCCcHHHH
Q 033160 3 LDAISKLEEALM--------------DEAKEYFNKATLYFQQAVDEEPSNELYQ 42 (126)
Q Consensus 3 ~dAisKleeAL~--------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Yk 42 (126)
++|+.-|+.||. .+-...+++|.+.|.+|+.++|..++|.
T Consensus 294 d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~ 347 (372)
T 3ly7_A 294 DESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLY 347 (372)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHH
Confidence 455566666655 2334456667777777777777666553
No 156
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.48 E-value=0.34 Score=35.70 Aligned_cols=37 Identities=16% Similarity=0.110 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 3 LDAISKLEEALM---------------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~---------------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++|+.-+++||. -...+.|++|.++|++|++.+|+|.
T Consensus 135 ~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 135 AKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 567777777776 1122457899999999999999875
No 157
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.30 E-value=0.33 Score=36.28 Aligned_cols=34 Identities=29% Similarity=0.307 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 6 ISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 6 isKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
-++||||-.-...+.|++|.++|+++++.+|++.
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~ 38 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQS 38 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccc
Confidence 3689999776667789999999999999999863
No 158
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=89.03 E-value=1.5 Score=28.75 Aligned_cols=17 Identities=12% Similarity=0.145 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 033160 18 KEYFNKATLYFQQAVDE 34 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~ 34 (126)
.+.|++|.++|++|++.
T Consensus 79 ~g~~~~A~~~~~~al~~ 95 (203)
T 3gw4_A 79 AGNWDAARRCFLEEREL 95 (203)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 34566777777777776
No 159
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=88.99 E-value=0.5 Score=34.49 Aligned_cols=19 Identities=5% Similarity=0.232 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHhcCCCc
Q 033160 20 YFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~N 38 (126)
.|++|.+||++|++..+++
T Consensus 130 ~~~~A~~~~~~al~~~~~~ 148 (293)
T 2qfc_A 130 DYEYCILELKKLLNQQLTG 148 (293)
T ss_dssp CHHHHHHHHHHHHTTCCCS
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 5789999999999866544
No 160
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=88.89 E-value=0.26 Score=36.44 Aligned_cols=20 Identities=20% Similarity=0.210 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHhcCCCc
Q 033160 19 EYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~N 38 (126)
+.|++|.++|++|++..+++
T Consensus 317 g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 317 HEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHC
Confidence 45677777777777765543
No 161
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=88.51 E-value=1.2 Score=30.76 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 12 ALMDEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+..-...+.|++|..+|++|++.+|+|.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~~~~~ 39 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVGTEDL 39 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhCcccH
Confidence 3334556678888888888888888873
No 162
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=88.49 E-value=0.45 Score=35.27 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 033160 9 LEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQK 43 (126)
Q Consensus 9 leeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkK 43 (126)
.+.|..-...+.|++|.++|++|++.+|+|..+..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 42 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT 42 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHH
Confidence 44445555667799999999999999999874433
No 163
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=88.45 E-value=0.74 Score=34.46 Aligned_cols=31 Identities=29% Similarity=0.522 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHh
Q 033160 3 LDAISKLEEALM---------------------DEAKEYFNKATLYFQQAVD 33 (126)
Q Consensus 3 ~dAisKleeAL~---------------------~~A~~~f~kA~~~FqkAvd 33 (126)
++|+.-|++||. -..++.|++|.+||++|++
T Consensus 201 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 201 EDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 567777777775 2234457888888888888
No 164
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=88.43 E-value=0.84 Score=37.72 Aligned_cols=37 Identities=22% Similarity=0.085 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHH----------------HHHH------HHHHHHHHHHHHHHhcCCCc
Q 033160 2 ILDAISKLEEALM----------------DEAK------EYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 2 i~dAisKleeAL~----------------~~A~------~~f~kA~~~FqkAvd~dP~N 38 (126)
+.+|..-||.||. -.+. .-.++|.++|+|||+++|++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~ 237 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH 237 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC
Confidence 4567778888888 1111 35689999999999999976
No 165
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=88.05 E-value=0.64 Score=34.98 Aligned_cols=21 Identities=19% Similarity=-0.081 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHh-----cCCCc
Q 033160 18 KEYFNKATLYFQQAVD-----EEPSN 38 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd-----~dP~N 38 (126)
.+.|++|.+||++|++ .+|.+
T Consensus 235 ~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 235 SGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 4567888888888888 66654
No 166
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=88.05 E-value=1.4 Score=32.43 Aligned_cols=25 Identities=12% Similarity=0.096 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
-...+.|++|.++|++|++.+|+|.
T Consensus 58 ~~~~g~~~~A~~~~~~al~~~~~~~ 82 (411)
T 4a1s_A 58 LCNAGDCRAGVAFFQAAIQAGTEDL 82 (411)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred HHHhCcHHHHHHHHHHHHHhcccCh
Confidence 4455678899999999999999874
No 167
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=86.76 E-value=1.2 Score=32.28 Aligned_cols=28 Identities=11% Similarity=0.001 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 12 ALMDEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 12 AL~~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+..-.....|++|..+|++|++.+|+|.
T Consensus 16 g~~~~~~g~~~~A~~~~~~al~~~~~~~ 43 (406)
T 3sf4_A 16 GERLCKSGDCRAGVSFFEAAVQVGTEDL 43 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCSCH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCcccH
Confidence 3334456678899999999999999873
No 168
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=86.49 E-value=2.8 Score=30.47 Aligned_cols=18 Identities=6% Similarity=0.237 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 033160 20 YFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~ 37 (126)
.|++|.+||++|+++.++
T Consensus 130 ~~~~Ai~~~~~al~~~~~ 147 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLT 147 (293)
T ss_dssp CHHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHHhcc
Confidence 457888888888875443
No 169
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=86.46 E-value=0.57 Score=30.59 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHhcCCCcH
Q 033160 21 FNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP~Ne 39 (126)
.++|..+|++||.+||+|.
T Consensus 25 ~~~A~~~l~~AL~~dp~~~ 43 (93)
T 3bee_A 25 TDEVSLLLEQALQLEPYNE 43 (93)
T ss_dssp CHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHCcCCH
Confidence 4899999999999999997
No 170
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.39 E-value=0.62 Score=34.28 Aligned_cols=38 Identities=16% Similarity=0.098 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 3 LDAISKLEEALM----------------------DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 3 ~dAisKleeAL~----------------------~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
++|+.-|++|+. -...+.+++|..||++|++++|++..
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 567777777776 11234589999999999999998654
No 171
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=86.09 E-value=0.82 Score=34.36 Aligned_cols=17 Identities=18% Similarity=-0.011 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhcCC
Q 033160 20 YFNKATLYFQQAVDEEP 36 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP 36 (126)
.|++|.+||++|++..+
T Consensus 156 ~~~~A~~~~~~al~~~~ 172 (378)
T 3q15_A 156 QTHVSMYHILQALDIYQ 172 (378)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHH
Confidence 34566666666666533
No 172
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=85.56 E-value=1.1 Score=35.68 Aligned_cols=27 Identities=11% Similarity=0.055 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
+..+++|..+|+++++.+|+ +-....|
T Consensus 221 lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 221 QGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 34446666666666666665 4444444
No 173
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=85.41 E-value=0.74 Score=34.12 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..+++|..||++|+ ++|++.
T Consensus 209 g~~~~A~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 209 ADYVAAQKCVRESY-SIPGFS 228 (307)
T ss_dssp TCHHHHHHHHHHHT-TSTTST
T ss_pred CCHHHHHHHHHHHh-CCCCCC
Confidence 45788999999999 888654
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=85.10 E-value=2.4 Score=34.32 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHhcCCCcH---HHHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE---LYQKSL 45 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne---~YkKsL 45 (126)
+.++++.+||++|+..+|+|+ .|++-|
T Consensus 207 ~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l 236 (331)
T 3dss_A 207 NVLLKELELVQNAFFTDPNDQSAWFYHRWL 236 (331)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 678999999999999999999 477766
No 175
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=85.07 E-value=1.2 Score=29.25 Aligned_cols=16 Identities=6% Similarity=0.013 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHhc
Q 033160 19 EYFNKATLYFQQAVDE 34 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~ 34 (126)
+.|++|..+|++|++.
T Consensus 121 g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 121 GDLAGARQEYEKSLVY 136 (203)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 3455666666666543
No 176
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=84.95 E-value=0.6 Score=34.95 Aligned_cols=19 Identities=21% Similarity=0.266 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 033160 19 EYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~ 37 (126)
+.|++|.++|++|++..|+
T Consensus 198 g~~~~A~~~~~~al~~~~~ 216 (383)
T 3ulq_A 198 KQYEDAISHFQKAYSMAEA 216 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 4678888888888877553
No 177
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=84.92 E-value=4 Score=32.30 Aligned_cols=16 Identities=13% Similarity=0.401 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHhcCC
Q 033160 21 FNKATLYFQQAVDEEP 36 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP 36 (126)
+++|.++|++|++..|
T Consensus 372 ~~~A~~~~~~Al~~~~ 387 (530)
T 2ooe_A 372 IKSGRMIFKKAREDAR 387 (530)
T ss_dssp HHHHHHHHHHHHTCTT
T ss_pred HHHHHHHHHHHHhccC
Confidence 4444445555544444
No 178
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=84.86 E-value=1.2 Score=31.35 Aligned_cols=37 Identities=16% Similarity=0.260 Sum_probs=25.8
Q ss_pred hHHHHHHHHHHHH----------H---HH----HHHHHHHHHHHHHHHhcCCCc
Q 033160 2 ILDAISKLEEALM----------D---EA----KEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 2 i~dAisKleeAL~----------~---~A----~~~f~kA~~~FqkAvd~dP~N 38 (126)
.++|+.-|+.|+. . .. ...+++|.++|++|++.+|.+
T Consensus 166 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 219 (273)
T 1ouv_A 166 LKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGG 219 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHH
Confidence 3567777777765 1 12 456788888888888888744
No 179
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=83.96 E-value=1.2 Score=32.26 Aligned_cols=19 Identities=16% Similarity=0.204 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 033160 19 EYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~ 37 (126)
+.|++|.++|++|++..++
T Consensus 281 g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 281 QDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHh
Confidence 4466777777777766443
No 180
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=83.73 E-value=1.8 Score=32.10 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 2 ILDAISKLEEALM----------------DEAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 2 i~dAisKleeAL~----------------~~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
++.+|.=||+-+. .-=+..|++|..|-...|+.||+|.
T Consensus 59 ~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 59 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 4677888888776 2224458999999999999999997
No 181
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=83.57 E-value=0.63 Score=32.13 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 033160 19 EYFNKATLYFQQAVDEEP 36 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP 36 (126)
+.|++|.++|++|++..|
T Consensus 97 g~~~~A~~~~~~al~~~~ 114 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISR 114 (338)
T ss_dssp TCHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHH
Confidence 446666777777666544
No 182
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=83.32 E-value=1.5 Score=34.81 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHHH
Q 033160 2 ILDAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNELY 41 (126)
Q Consensus 2 i~dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~Y 41 (126)
+++|..-+|.||. ....+.+++|...|++||...|+.+++
T Consensus 28 ~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw 82 (530)
T 2ooe_A 28 IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLW 82 (530)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHH
Confidence 4567777888877 223356889999999999999965543
No 183
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=82.77 E-value=0.88 Score=33.01 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..|++|..|+...|+.||+|.
T Consensus 88 g~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH
T ss_pred hhHHHHHHHHHHHHHhCCCCH
Confidence 458999999999999999996
No 184
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=82.07 E-value=0.99 Score=30.60 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHhc
Q 033160 18 KEYFNKATLYFQQAVDE 34 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~ 34 (126)
.+.|++|.++|++|++.
T Consensus 56 ~g~~~~A~~~~~~al~~ 72 (283)
T 3edt_B 56 QNKYKEAAHLLNDALAI 72 (283)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHH
Confidence 34567777777777766
No 185
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=81.22 E-value=0.61 Score=34.57 Aligned_cols=20 Identities=15% Similarity=0.129 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhcCCCc
Q 033160 19 EYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~N 38 (126)
+.|++|.++|++|+++.|++
T Consensus 169 g~~~~A~~~~~~al~~~~~~ 188 (307)
T 2ifu_A 169 QKFDEAAASLQKEKSMYKEM 188 (307)
T ss_dssp TCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHc
Confidence 34566666666666665544
No 186
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=81.13 E-value=2.5 Score=31.60 Aligned_cols=51 Identities=12% Similarity=0.081 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHH-----------HHH-----HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhc
Q 033160 2 ILDAISKLEEALM-----------DEA-----KEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 2 i~dAisKleeAL~-----------~~A-----~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~ 62 (126)
|+.+|.=||+-+. --| +..|++|..|-...|+.||+|. +|=+|+..|.+.+
T Consensus 58 i~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~----------QA~~Lk~~Ie~~i 124 (144)
T 1y8m_A 58 ERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK----------QVGALKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH----------HHHHHHHHHHHHH
Confidence 4667888888776 112 2457999999999999999996 3445555555544
No 187
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=81.06 E-value=1.2 Score=30.27 Aligned_cols=16 Identities=13% Similarity=0.355 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHhc
Q 033160 19 EYFNKATLYFQQAVDE 34 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~ 34 (126)
+.|++|.++|++|++.
T Consensus 141 g~~~~A~~~~~~al~~ 156 (283)
T 3edt_B 141 GKAEEVEYYYRRALEI 156 (283)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4477788888888877
No 188
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.07 E-value=6.3 Score=28.69 Aligned_cols=35 Identities=11% Similarity=0.273 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCC-----cHHHHHHHHHhh
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPS-----NELYQKSLEVAA 49 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~-----Ne~YkKsLe~a~ 49 (126)
++|+++|.+..+++.++|.++.+ ++.|-++-+|=.
T Consensus 39 ~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~ 78 (116)
T 2dl1_A 39 EEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQ 78 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 89999999999999999998875 566665554433
No 189
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=80.02 E-value=0.92 Score=31.49 Aligned_cols=17 Identities=12% Similarity=0.337 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhcC
Q 033160 19 EYFNKATLYFQQAVDEE 35 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~d 35 (126)
+.|++|.++|++|++..
T Consensus 209 g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 209 GKFKQAETLYKEILTRA 225 (311)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 44566666666666543
No 190
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=79.95 E-value=1.8 Score=30.48 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHH-------------HHH----HHHHHHHHHHHHHHHhcCCC
Q 033160 2 ILDAISKLEEALM-------------DEA----KEYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 2 i~dAisKleeAL~-------------~~A----~~~f~kA~~~FqkAvd~dP~ 37 (126)
.++|+.-|+.|+. -.- ...+++|.++|++|++.++.
T Consensus 130 ~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~ 182 (273)
T 1ouv_A 130 FKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDS 182 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 3567777777776 222 77889999999999988653
No 191
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=79.56 E-value=1.5 Score=31.90 Aligned_cols=11 Identities=9% Similarity=0.404 Sum_probs=5.4
Q ss_pred HHHHHHHHHHH
Q 033160 4 DAISKLEEALM 14 (126)
Q Consensus 4 dAisKleeAL~ 14 (126)
+|+.-+++||.
T Consensus 214 ~A~~~~~~al~ 224 (293)
T 3u3w_A 214 ESLYQVNKAIE 224 (293)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44555555544
No 192
>2wb7_A PT26-6P; extra chromosomal elements, unknown function; 2.60A {Thermococcus SP}
Probab=79.46 E-value=4 Score=36.45 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHhc------CCCcHHHHHHHHHhhc
Q 033160 1 MILDAISKLEEALM----------DEAKEYFNKATLYFQQAVDE------EPSNELYQKSLEVAAK 50 (126)
Q Consensus 1 Mi~dAisKleeAL~----------~~A~~~f~kA~~~FqkAvd~------dP~Ne~YkKsLe~a~K 50 (126)
||+..-.|.++|-. ++|.++-++|.+|||+|++. .=|=+.++.-|+++.+
T Consensus 418 ~i~sL~eKi~~AE~~~~k~e~~~n~~a~~yA~kAi~~Y~~Ai~~L~k~~~tdd~~~v~~~~~~ak~ 483 (526)
T 2wb7_A 418 MINSLQEKIDEAEQLLAKAKGMNNENAIEYAQGAIDEYKAAINDLQKAAQQDDYQMFLNYLNAAKK 483 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHhhh
Confidence 34455556655544 67777788888888887752 2234577777777765
No 193
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=79.17 E-value=0.39 Score=38.93 Aligned_cols=61 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhcCCCcHH----HHHHHHHhhcCchhHHHHHHhc
Q 033160 2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQAVDEEPSNEL----YQKSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkAvd~dP~Ne~----YkKsLe~a~KAPelH~ei~kq~ 62 (126)
++.|++-+.+|+. .+|..+|.+|.++|.+|+..+||... -.|.-+--..|=+|-.-|.++-
T Consensus 20 ~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~k 91 (257)
T 2ymb_A 20 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQEK 91 (257)
T ss_dssp ------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3567777888887 88889999999999999999986652 2333355566777766665543
No 194
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=78.22 E-value=1.3 Score=37.14 Aligned_cols=21 Identities=19% Similarity=0.321 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
+.+++|.+||++|+++||++-
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~a 233 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEFT 233 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHhCCCCH
Confidence 456899999999999999986
No 195
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=77.29 E-value=1.8 Score=36.55 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHhcCCCcH---HHHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE---LYQKSL 45 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne---~YkKsL 45 (126)
+.+++|.+||++|+..+|+|+ .|+.-|
T Consensus 206 ~~~~eel~~~~~ai~~~P~~~saW~y~~~l 235 (567)
T 1dce_A 206 NVLLKELELVQNAFFTDPNDQSAWFYHRWL 235 (567)
T ss_dssp HHHHHHHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence 678999999999999999999 566655
No 196
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=76.53 E-value=3.7 Score=33.18 Aligned_cols=22 Identities=14% Similarity=0.179 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++++++.+||+++++++|||-
T Consensus 251 ~~~l~~el~~~~elle~~pd~~ 272 (331)
T 3dss_A 251 STVLQSELESCKELQELEPENK 272 (331)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHhhCcccc
Confidence 4789999999999999999996
No 197
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=76.30 E-value=2.6 Score=33.23 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHhcCCCcH---HHHHHH
Q 033160 20 YFNKATLYFQQAVDEEPSNE---LYQKSL 45 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne---~YkKsL 45 (126)
.++++.+|+++|+..+|+|+ .|+..|
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~l 229 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGI 229 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHH
Confidence 48999999999999999999 476665
No 198
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=74.50 E-value=7.5 Score=27.81 Aligned_cols=41 Identities=29% Similarity=0.364 Sum_probs=33.0
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhc
Q 033160 9 LEEALM-----DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAK 50 (126)
Q Consensus 9 leeAL~-----~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~K 50 (126)
.=|+|. ++|.+++.+|..|...|+.+- .++-=.-||++=.+
T Consensus 21 rAe~ll~~gkydeAIech~kAa~yL~eAmklt-qs~qa~~SLqLQrd 66 (97)
T 2crb_A 21 RADRLLAAGKYEEAISCHRKATTYLSEAMKLT-ESEQAHLSLELQRD 66 (97)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHH
Confidence 345555 999999999999999999998 67777778877654
No 199
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=73.44 E-value=3.4 Score=33.86 Aligned_cols=28 Identities=14% Similarity=0.309 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhcCCCcH---HHHHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE---LYQKSLE 46 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne---~YkKsLe 46 (126)
..++++.+|+++|+..+|+|+ .|++.|=
T Consensus 222 ~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll 252 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPHNVSAWNYLRGFL 252 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 458999999999999999999 5866663
No 200
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=68.84 E-value=6.6 Score=33.15 Aligned_cols=19 Identities=5% Similarity=0.190 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhcCCCcH
Q 033160 21 FNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP~Ne 39 (126)
|++|.++|.+|++.+|+|-
T Consensus 89 ~~~eL~~~~~~l~~~pK~y 107 (567)
T 1dce_A 89 VKAELGFLESCLRVNPKSY 107 (567)
T ss_dssp HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhCCCCH
Confidence 7777777777777777775
No 201
>1vp7_A Exodeoxyribonuclease VII small subunit; NP_881400.1, joint center for structural genomics, PSI, protein structure initiative; 2.40A {Bordetella pertussis tohama I} SCOP: a.7.13.1
Probab=68.26 E-value=9.9 Score=26.93 Aligned_cols=30 Identities=10% Similarity=0.203 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM---------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~---------~~A~~~f~kA~~~FqkA 31 (126)
.++|+.+||+-+. ++++..|+++....+.|
T Consensus 32 FEeal~eLEeIV~~LE~gel~LEesl~lyeeG~~L~k~C 70 (100)
T 1vp7_A 32 FETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVC 70 (100)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678888888777 88999999988877765
No 202
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=67.10 E-value=9.4 Score=27.11 Aligned_cols=28 Identities=25% Similarity=0.056 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
||-|.+=|||..--...|++|.++.++|
T Consensus 21 ~Ars~~~eAl~~Ak~gdfe~A~~~l~eA 48 (109)
T 3k1s_A 21 NARSFAMEALQFAKQGKMAEADEAMVKA 48 (109)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6788888888843344555555444444
No 203
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=66.52 E-value=4.4 Score=28.01 Aligned_cols=16 Identities=19% Similarity=0.534 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHhc
Q 033160 19 EYFNKATLYFQQAVDE 34 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~ 34 (126)
+.|++|.++|++|++.
T Consensus 167 ~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 167 GKYEEVEYYYQRALEI 182 (311)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4477888888888877
No 204
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=65.95 E-value=3.5 Score=27.55 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcH------HHHHHHHH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE------LYQKSLEV 47 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne------~YkKsLe~ 47 (126)
++.++|.++.++|++.|=..+ +|+.+|+.
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 456778888888888765433 56665544
No 205
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=65.00 E-value=11 Score=27.44 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
||-|.+=|||..--...|++|.++.++|
T Consensus 36 ~ARS~~~eAl~~Ak~gdfe~A~~~l~eA 63 (120)
T 3l8r_A 36 NARSIVHEAFDAMREKNYILAEQKLQEA 63 (120)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4666666666633334444444444333
No 206
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=63.69 E-value=3.8 Score=28.63 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCc---------HHHHHHH
Q 033160 16 EAKEYFNKATLYFQQAVDEEPSN---------ELYQKSL 45 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~dP~N---------e~YkKsL 45 (126)
.-+++|++|.+|-.+||..|=+| ++|+|-+
T Consensus 8 ~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi 46 (89)
T 3eab_A 8 RVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGI 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHH
Confidence 34678888888888888766552 3666665
No 207
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=63.13 E-value=13 Score=26.23 Aligned_cols=28 Identities=43% Similarity=0.355 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
+|-|.+=|||..--...|++|.++.++|
T Consensus 19 ~ArS~~~eAl~~Ak~g~fe~A~~~l~eA 46 (105)
T 2e2a_A 19 DARSKLLEALKAAENGDFAKADSLVVEA 46 (105)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5667777777733334444444444443
No 208
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=62.22 E-value=13 Score=26.00 Aligned_cols=28 Identities=25% Similarity=0.171 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
+|-|.+=|||..--...|++|.++.++|
T Consensus 17 ~Ars~~~eAl~~Ak~g~fe~A~~~l~eA 44 (103)
T 1wcr_A 17 QARSLAYAALKQAKQGDFAAAKAMMDQS 44 (103)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 5777777888744444455554444444
No 209
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=60.97 E-value=5.9 Score=26.21 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHhcCCCcH------HHHHHHHH
Q 033160 20 YFNKATLYFQQAVDEEPSNE------LYQKSLEV 47 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne------~YkKsLe~ 47 (126)
+.++|.++.++|++.|=..+ +|+.+|+.
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55677777777777654332 55555543
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=60.00 E-value=6.5 Score=32.47 Aligned_cols=12 Identities=8% Similarity=-0.078 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHH
Q 033160 3 LDAISKLEEALM 14 (126)
Q Consensus 3 ~dAisKleeAL~ 14 (126)
++|+.-+|+||.
T Consensus 315 ~eA~~~~~~~L~ 326 (433)
T 3qww_A 315 SELLEICELSQE 326 (433)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466777777776
No 211
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=58.99 E-value=8.7 Score=25.84 Aligned_cols=12 Identities=33% Similarity=0.387 Sum_probs=10.0
Q ss_pred ccccCCCcchhh
Q 033160 85 KKKKSSDLKYDI 96 (126)
Q Consensus 85 kkkk~sDf~YDv 96 (126)
.+++.++|-||.
T Consensus 3 ~~~e~dpF~YDY 14 (67)
T 2jp3_A 3 PVDKGSPFYYDW 14 (67)
T ss_dssp TTSTTSGGGGGG
T ss_pred ccccCCCcccch
Confidence 467899999994
No 212
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=58.75 E-value=6.5 Score=30.97 Aligned_cols=20 Identities=5% Similarity=0.014 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHhcCCCcH
Q 033160 20 YFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+++|.++|.+++..+|+|-
T Consensus 84 ~~~eeL~~~~~~L~~nPk~y 103 (306)
T 3dra_A 84 NLYDELDWCEEIALDNEKNY 103 (306)
T ss_dssp CHHHHHHHHHHHHHHCTTCC
T ss_pred cHHHHHHHHHHHHHHCcccH
Confidence 67788888888888888776
No 213
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=57.92 E-value=15 Score=30.05 Aligned_cols=18 Identities=17% Similarity=0.250 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhcCCCcH
Q 033160 22 NKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 22 ~kA~~~FqkAvd~dP~Ne 39 (126)
+++.+|+.++++.||.|-
T Consensus 142 ~~EL~~~~k~L~~dpkNy 159 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNY 159 (349)
T ss_dssp HHHHHHHHHHTSSCTTCH
T ss_pred HHHHHHHHHHHHhCCCCH
Confidence 344444555555555444
No 214
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.48 E-value=2.3 Score=31.04 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcH------HHHHHH
Q 033160 10 EEALMDEAKEYFNKATLYFQQAVDEEPSNE------LYQKSL 45 (126)
Q Consensus 10 eeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne------~YkKsL 45 (126)
|.+....-+++|++|.+|-.+||..|=... +|++-+
T Consensus 8 e~~~l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI 49 (116)
T 2dl1_A 8 EPAEIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGI 49 (116)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHH
Confidence 334445678899999999999998875432 777766
No 215
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=56.89 E-value=18 Score=24.67 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Q 033160 2 ILDAISKLEEALM----DEAKEYFNKATLYFQQAVDE 34 (126)
Q Consensus 2 i~dAisKleeAL~----~~A~~~f~kA~~~FqkAvd~ 34 (126)
|--+|-|+++|+. ++|.+.|.+|.....+|+..
T Consensus 26 ~rT~iKk~~~Ai~~gd~~~A~~~l~~a~~~iDkaa~K 62 (85)
T 3r8n_T 26 MRTFIKKVYAAIEAGDKAAAQKAFNEMQPIVDRQAAK 62 (85)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHC
Confidence 4567899999998 78888888888888888753
No 216
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=56.61 E-value=5.5 Score=31.15 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 033160 19 EYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~ 37 (126)
..+++|..+|++|++.+|+
T Consensus 417 ~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 417 RDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp CCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCC
Confidence 4467888888888888854
No 217
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=56.50 E-value=7.6 Score=33.24 Aligned_cols=20 Identities=30% Similarity=0.431 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHhcCCCcH
Q 033160 20 YFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne 39 (126)
.++.|..||++|.++.|+|.
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G 186 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNG 186 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBS
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 35799999999999999997
No 218
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=54.77 E-value=50 Score=22.85 Aligned_cols=18 Identities=22% Similarity=0.196 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 033160 20 YFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~ 37 (126)
.+++|.++|++|++.+|+
T Consensus 104 d~~~A~~~~~~A~~~~~~ 121 (212)
T 3rjv_A 104 DVAHAITLLQDAARDSES 121 (212)
T ss_dssp CHHHHHHHHHHHTSSTTS
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 356677777777777663
No 219
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=53.31 E-value=20 Score=26.16 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHhcCCC
Q 033160 20 YFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~ 37 (126)
.|++|..+|++|++..|+
T Consensus 29 ~~~~A~~~~~~al~~~~~ 46 (373)
T 1hz4_A 29 NPDEAERLAKLALEELPP 46 (373)
T ss_dssp CHHHHHHHHHHHHHTCCT
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 344555555555554443
No 220
>3s6n_M SurviVal motor neuron protein; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2leh_B
Probab=53.12 E-value=14 Score=22.39 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhcC
Q 033160 19 EYFNKATLYFQQAVDEE 35 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~d 35 (126)
.-||||...|+.||..+
T Consensus 16 KayDKAVaSfk~alk~~ 32 (37)
T 3s6n_M 16 KAYDKAVASFKHALKNG 32 (37)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 34999999999999765
No 221
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=52.52 E-value=29 Score=23.76 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM--------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~--------~~A~~~f~kA~~~FqkA 31 (126)
|+.=+..|||||. ..|.+.++-|..||+.+
T Consensus 9 i~kYi~~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da 46 (87)
T 2pmr_A 9 IEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDS 46 (87)
T ss_dssp HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHH
Confidence 3445677777777 46777777777777766
No 222
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=51.27 E-value=7.8 Score=27.39 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhcC
Q 033160 20 YFNKATLYFQQAVDEE 35 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~d 35 (126)
+.++|.+++++||++|
T Consensus 14 ~l~kAi~lv~~Ave~D 29 (117)
T 2cpt_A 14 NLQKAIDLASKAAQED 29 (117)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555543
No 223
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=51.18 E-value=8.3 Score=26.96 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 033160 18 KEYFNKATLYFQQAVDEE 35 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~d 35 (126)
...|++|.++|++|++.+
T Consensus 31 ~~~~~~A~~~~~~a~~~g 48 (212)
T 3rjv_A 31 SGDYQKAEYWAQKAAAQG 48 (212)
T ss_dssp HTCHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 345667777777776653
No 224
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=50.69 E-value=8.1 Score=26.04 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHH
Q 033160 20 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEI 58 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei 58 (126)
+.++|.+++++|++.|= +..|..+|.+-..|=|+-+.+
T Consensus 11 ~l~~Ai~lv~~Ave~D~-~g~y~eAl~~Y~~Aie~l~~a 48 (93)
T 1wfd_A 11 DSTAAVAVLKRAVELDA-ESRYQQALVCYQEGIDMLLQV 48 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 45678888888888764 344555555544444444333
No 225
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=49.96 E-value=24 Score=27.93 Aligned_cols=59 Identities=8% Similarity=-0.175 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHh-hcCchhHHHHHHhc
Q 033160 3 LDAISKLEEALMDEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVA-AKAPELHMEIHKHG 62 (126)
Q Consensus 3 ~dAisKleeAL~~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a-~KAPelH~ei~kq~ 62 (126)
+-..+-|..|.--. -..+++|.++|.+|+++||+.--.-..|=.| ....+....++++.
T Consensus 5 ~~~~~~~~~~~~~~-~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~ 64 (282)
T 4f3v_A 5 DRLASLFESAVSML-PMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSR 64 (282)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTG
T ss_pred HHHHHHHHHHhccc-CCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHH
Confidence 33334444444332 3457889999999999999988777766444 55566666666654
No 226
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=49.39 E-value=44 Score=22.84 Aligned_cols=35 Identities=14% Similarity=0.403 Sum_probs=24.5
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 6 ISKLEEALM------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 6 isKleeAL~------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
|.+||+.|. ..|.+...+|.+ +++.||| |+-+.+|
T Consensus 7 l~eLq~e~~~~E~QL~~A~QKLkdA~~----~~e~DPD-evNK~~~ 47 (78)
T 2ic6_A 7 LKEVQDNITLHEQRLVTTRQKLKDAER----AVELDPD-DVNKSTL 47 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCc-HHHHHHH
Confidence 556666666 789999999975 5567995 5445444
No 227
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=49.23 E-value=40 Score=24.39 Aligned_cols=37 Identities=22% Similarity=0.445 Sum_probs=26.6
Q ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 4 DAISKLEEALM------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 4 dAisKleeAL~------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
.-|.+||+.|. ..|.+..++|.+ +++.||| |+-+.+|
T Consensus 35 ~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~----~~E~DPD-evNK~tl 77 (107)
T 2k48_A 35 STLQELQENITAHEQQLVTARQKLKDAEK----AVEVDPD-DVNKSTL 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCC-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCc-HHHHHHH
Confidence 45667777777 789999999975 5567995 5555555
No 228
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=48.84 E-value=13 Score=30.37 Aligned_cols=12 Identities=0% Similarity=0.044 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHH
Q 033160 3 LDAISKLEEALM 14 (126)
Q Consensus 3 ~dAisKleeAL~ 14 (126)
++|+.-+|.+|.
T Consensus 304 ~~a~~~~~~~L~ 315 (429)
T 3qwp_A 304 EQVLAMCQAIIS 315 (429)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 456666677765
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=48.74 E-value=14 Score=30.47 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 033160 16 EAKEYFNKATLYFQQAVDEEPS 37 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~dP~ 37 (126)
.|+..-.+|...++||+++||+
T Consensus 174 ~Al~~l~~A~a~lerAleLDP~ 195 (301)
T 3u64_A 174 ALPDTVHAAVMMLERACDLWPS 195 (301)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHhHHHHHHHHHHHHHhCCC
Confidence 4777888999999999999999
No 230
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=48.12 E-value=10 Score=25.96 Aligned_cols=10 Identities=20% Similarity=0.521 Sum_probs=8.8
Q ss_pred ccCCCcchhh
Q 033160 87 KKSSDLKYDI 96 (126)
Q Consensus 87 kk~sDf~YDv 96 (126)
++.++|-||.
T Consensus 7 ~~~dpF~YDY 16 (74)
T 2zxe_G 7 DNDERFTYDY 16 (74)
T ss_dssp TCGGGGCCCH
T ss_pred CCCCCcccch
Confidence 7899999994
No 231
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=47.15 E-value=28 Score=24.83 Aligned_cols=33 Identities=21% Similarity=0.158 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhc
Q 033160 2 ILDAISKLEEALM----DEAKEYFNKATLYFQQAVDE 34 (126)
Q Consensus 2 i~dAisKleeAL~----~~A~~~f~kA~~~FqkAvd~ 34 (126)
+--+|-|+++|+. ++|.+.|.+|.....+|+..
T Consensus 33 ~rT~iKkv~~Ai~~gdk~~A~~~l~~a~s~iDkaa~K 69 (106)
T 2vqe_T 33 IKTLSKKAVQLAQEGKAEEALKIMRKAESLIDKAAKG 69 (106)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHc
Confidence 4568899999997 88999999999999998864
No 232
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=46.47 E-value=21 Score=24.53 Aligned_cols=30 Identities=13% Similarity=0.385 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM--DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~--~~A~~~f~kA~~~FqkA 31 (126)
|+.=+..|||||. ..|.+.++-|..||+.+
T Consensus 11 i~kYi~~l~eaL~~i~~a~~~l~mA~~Y~~Da 42 (86)
T 2oo2_A 11 TLKWLERIEERVKEIEGDEGFMRNIEAYISDS 42 (86)
T ss_dssp HHHHHHHHHHHGGGEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 3445778888888 22445555555555544
No 233
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=46.25 E-value=29 Score=28.79 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHH
Q 033160 3 LDAISKLEEALM-------------DEAKEYFNKATLY 27 (126)
Q Consensus 3 ~dAisKleeAL~-------------~~A~~~f~kA~~~ 27 (126)
+||++.|.+.|. ++++++-+-+.+|
T Consensus 119 ~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreY 156 (320)
T 3mkr_B 119 EEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREY 156 (320)
T ss_dssp HHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHH
Confidence 455555555555 4555555555554
No 234
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=45.81 E-value=48 Score=24.19 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=33.0
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-----HHhhcCchhHHHHHHhcccccc
Q 033160 6 ISKLEEALM------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL-----EVAAKAPELHMEIHKHGLGQQT 67 (126)
Q Consensus 6 isKleeAL~------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL-----e~a~KAPelH~ei~kq~~~qq~ 67 (126)
|.+||+.|. ..|.+...+|.+ +++.||| |+-+.+| ++..- -+==.||.|+++....
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~----~~e~DPD-evNK~tl~~R~~~Vs~l-q~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEK----QYEKDPD-ELNKRTLTDREGVAVSI-QAKIDELKRQLADRIA 90 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCC-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCc-HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 345555555 678999999975 5677995 5555555 33211 1112467777765554
No 235
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=45.56 E-value=18 Score=26.39 Aligned_cols=16 Identities=13% Similarity=0.015 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHhcC
Q 033160 20 YFNKATLYFQQAVDEE 35 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~d 35 (126)
.|++|.++|++|++..
T Consensus 108 ~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLI 123 (373)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4566777777776654
No 236
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=43.95 E-value=16 Score=27.66 Aligned_cols=21 Identities=19% Similarity=0.143 Sum_probs=15.4
Q ss_pred HHHHHH--HHHHHHHHHHHHhcC
Q 033160 15 DEAKEY--FNKATLYFQQAVDEE 35 (126)
Q Consensus 15 ~~A~~~--f~kA~~~FqkAvd~d 35 (126)
+.|+.. |+-|.+||+++=|.+
T Consensus 42 ~~AL~~gn~~lAe~cy~~~~D~~ 64 (177)
T 3mkq_B 42 QEALAQGNASLAEMIYQTQHSFD 64 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHcCChHHHHHHHHHhCCHH
Confidence 555554 999999999985543
No 237
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=43.49 E-value=68 Score=26.05 Aligned_cols=28 Identities=11% Similarity=0.084 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 033160 16 EAKEYFNKATLYFQQAVDEEPSNELYQKSL 45 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL 45 (126)
+|..+|++|.+.+++. .-||...++..+
T Consensus 389 eA~~~~~~Al~i~~~~--lG~~Hp~~~~~~ 416 (429)
T 3qwp_A 389 QAMKNLRLAFDIMRVT--HGREHSLIEDLI 416 (429)
T ss_dssp HHHHHHHHHHHHHHHH--TCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--cCCCChHHHHHH
Confidence 3333333333333333 256677666654
No 238
>2b8i_A PAS factor; four helix bundle, lipid binding protein; 1.80A {Vibrio vulnificus}
Probab=43.21 E-value=16 Score=25.14 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=18.8
Q ss_pred HHHHHHHHhhcCchhHHHHHHhc
Q 033160 40 LYQKSLEVAAKAPELHMEIHKHG 62 (126)
Q Consensus 40 ~YkKsLe~a~KAPelH~ei~kq~ 62 (126)
.|..-..+|.+.||.|.+|...+
T Consensus 9 iydtL~~La~~~PeqhA~iRQ~L 31 (77)
T 2b8i_A 9 IYETLVNLANQDPEQHATIRQNL 31 (77)
T ss_dssp HHHHHHHHHHSCGGGHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHH
Confidence 45666689999999999998755
No 239
>2ls4_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}
Probab=48.50 E-value=5.2 Score=22.30 Aligned_cols=15 Identities=33% Similarity=0.408 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHHHH
Q 033160 97 FGWVILAVGIVAWVG 111 (126)
Q Consensus 97 ~GWviLa~givaWvg 111 (126)
-||+||+|.+-+-+|
T Consensus 2 Ng~l~iavvlGa~~G 16 (26)
T 2ls4_A 2 NGYLCIAVAAGAGTG 16 (26)
Confidence 389999998766655
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=41.65 E-value=72 Score=25.39 Aligned_cols=32 Identities=13% Similarity=0.278 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcH---HHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNE---LYQKSLE 46 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne---~YkKsLe 46 (126)
.+|+..|+.....+..-|-.||+-+ +|+.-|.
T Consensus 222 ~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~il~ 256 (388)
T 2ff4_A 222 SDALGAYRRVKTTLADDLGIDPGPTLRALNERILR 256 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999999887 5666663
No 241
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=41.27 E-value=25 Score=24.10 Aligned_cols=30 Identities=17% Similarity=0.498 Sum_probs=19.4
Q ss_pred ChHHHHHHHH--------HHHHHHHHHHHHHHHHHHHH
Q 033160 1 MILDAISKLE--------EALMDEAKEYFNKATLYFQQ 30 (126)
Q Consensus 1 Mi~dAisKle--------eAL~~~A~~~f~kA~~~Fqk 30 (126)
|+++|+++++ +-+.+-|..||+.|..|+.+
T Consensus 15 ~leeaL~~i~~~~l~~~a~~~l~mA~~Y~~Da~~fl~k 52 (87)
T 2pmr_A 15 LLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLEK 52 (87)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4566766665 33337778888887776654
No 242
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=41.13 E-value=19 Score=26.53 Aligned_cols=23 Identities=4% Similarity=0.177 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhcC-CCc
Q 033160 16 EAKEYFNKATLYFQQAVDEE-PSN 38 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~d-P~N 38 (126)
+-...++++..+|+..++.+ |++
T Consensus 46 ~~~~~~~~gI~lLe~ll~~~~p~~ 69 (152)
T 1pc2_A 46 KYNDDIRKGIVLLEELLPKGSKEE 69 (152)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccc
Confidence 33557889999999999999 833
No 243
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=40.62 E-value=29 Score=34.00 Aligned_cols=35 Identities=9% Similarity=0.233 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhh
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAA 49 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~ 49 (126)
..|.++|-.|.+|-.|.++.+|.-|+|++.+++..
T Consensus 1294 ~~~~~~~g~~~k~l~k~~~~k~~~~~~~~~~~~~~ 1328 (1354)
T 3lxu_X 1294 AYAHGHYGRMYKYVVKLIEEKRTRDHFVELAAING 1328 (1354)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 66899999999999999999999999999988875
No 244
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=40.51 E-value=21 Score=26.80 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=19.0
Q ss_pred hhhhHHHHHHHHHHHHHh-hhcCCCCCCC
Q 033160 95 DIFGWVILAVGIVAWVGF-AKSHMPPPPP 122 (126)
Q Consensus 95 Dv~GWviLa~givaWvg~-Aks~~P~~~p 122 (126)
-|+|.|++.+||-+|+-+ -|..+-+|+|
T Consensus 80 ~v~g~v~~~i~~s~~~f~~~r~~v~~p~P 108 (147)
T 1v54_D 80 TVVGAAMFFIGFTALLLIWEKHYVYGPIP 108 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 389999999998888543 4655533333
No 245
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=40.00 E-value=1.4e+02 Score=23.64 Aligned_cols=23 Identities=13% Similarity=0.098 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
-++....|.+||..||..+|-|-
T Consensus 97 ln~rrr~Ale~y~~ALq~~pp~~ 119 (211)
T 3umh_A 97 LNDRRRLALENYITALQAVPPRP 119 (211)
T ss_dssp HHHHHHHHHHHHHHHHTCSSCCH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCh
Confidence 35668899999999999999985
No 246
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=39.87 E-value=14 Score=30.91 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCcH
Q 033160 3 LDAISKLEEALMDEAKEYFNKATLYFQQAVDE-----EPSNE 39 (126)
Q Consensus 3 ~dAisKleeAL~~~A~~~f~kA~~~FqkAvd~-----dP~Ne 39 (126)
+++-.-+|+|-.......|++|...|++||+. -|++.
T Consensus 307 ~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp 348 (490)
T 3n71_A 307 QFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNL 348 (490)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 34444455554444455677888888888764 45554
No 247
>3dfb_A Metal-binding protein SMBP; four helical bundle, copper, periplasm; 1.90A {Nitrosomonas europaea} PDB: 3u8v_A
Probab=39.47 E-value=47 Score=23.31 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~-------~~A~~~f~kA~~~FqkA 31 (126)
|.++|.-||+|+. +.|...-++|..-|+++
T Consensus 52 ~~~aIkhLeeAI~hg~~ghad~Atkha~eAl~Hlk~~ 88 (93)
T 3dfb_A 52 VGHGIKHLEDAIKHGEEGHVGVATKHAQEAIEHLRAS 88 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 4677888888888 67777777777777664
No 248
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=39.32 E-value=16 Score=23.73 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHH
Q 033160 20 YFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHME 57 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~e 57 (126)
+.++|..++++|++.|=. ..|..+|++-..|=|+-+.
T Consensus 9 ~l~~A~~l~~~Av~~D~~-g~y~eAl~~Y~~aie~l~~ 45 (85)
T 2v6x_A 9 FLTKGIELVQKAIDLDTA-TQYEEAYTAYYNGLDYLML 45 (85)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHH
Confidence 567788888888877643 4445555444444444333
No 249
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=39.20 E-value=82 Score=26.20 Aligned_cols=47 Identities=23% Similarity=0.184 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH-------------HHHHHHHHHHHHH-----HHHHHhcCCCcHHHHHHHHHhh
Q 033160 2 ILDAISKLEEALM-------------DEAKEYFNKATLY-----FQQAVDEEPSNELYQKSLEVAA 49 (126)
Q Consensus 2 i~dAisKleeAL~-------------~~A~~~f~kA~~~-----FqkAvd~dP~Ne~YkKsLe~a~ 49 (126)
++||++.|.+.|. ++++++-+-+.+| -+-+=..=|+++. +++||||+
T Consensus 130 f~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~-kR~lELAA 194 (325)
T 3mv2_A 130 PDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNT-VRMLELAA 194 (325)
T ss_dssp HHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccH-HHHHHHHH
No 250
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=38.95 E-value=26 Score=23.11 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCc
Q 033160 18 KEYFNKATLYFQQAVDEEPSN 38 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~N 38 (126)
...+++|.++|++|.+....+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~~ 28 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEMF 28 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCTT
T ss_pred ccCHHHHHHHHHHHHcCCCHh
Confidence 356788888888888776443
No 251
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=38.83 E-value=84 Score=26.23 Aligned_cols=28 Identities=11% Similarity=0.055 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHh-----cCCCcHHHHHHHHH
Q 033160 20 YFNKATLYFQQAVD-----EEPSNELYQKSLEV 47 (126)
Q Consensus 20 ~f~kA~~~FqkAvd-----~dP~Ne~YkKsLe~ 47 (126)
.|++|..+|+||++ .-|+...+...+.+
T Consensus 408 ~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~ 440 (490)
T 3n71_A 408 HIEVGHGMICKAYAILLVTHGPSHPITKDLEAM 440 (490)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 35555555555554 35777777765543
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=38.31 E-value=36 Score=27.19 Aligned_cols=24 Identities=17% Similarity=-0.004 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCcH
Q 033160 16 EAKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
.+...|++|....++++..||-||
T Consensus 182 l~~g~~~~a~~~l~~~~~~~P~~E 205 (388)
T 2ff4_A 182 IACGRASAVIAELEALTFEHPYRE 205 (388)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCH
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH
Confidence 345568999999999999999999
No 253
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.34 E-value=19 Score=26.66 Aligned_cols=17 Identities=12% Similarity=0.044 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHhc
Q 033160 18 KEYFNKATLYFQQAVDE 34 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~ 34 (126)
++.|++|..+|++|+..
T Consensus 188 ~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTA 204 (434)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHH
Confidence 34455555555555543
No 254
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=35.76 E-value=1.2e+02 Score=25.39 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHhc---CCCcHHHHHHHHHhhcCchhHHHHHHhcccccc
Q 033160 20 YFNKATLYFQQAVDE---EPSNELYQKSLEVAAKAPELHMEIHKHGLGQQT 67 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~---dP~Ne~YkKsLe~a~KAPelH~ei~kq~~~qq~ 67 (126)
..++|.++|+--+.. .-.+++=..-|+.+-+-|+|-.||.-|+.-|-.
T Consensus 82 l~~~A~~~F~~i~~~~~~~~~~~~~~~i~~~~~~~~~LrdEiy~Ql~kQ~t 132 (555)
T 3au4_A 82 LQDEAIKIFNSLQQLESMSDPIPIIQGILQTGHDLRPLRDELYCQLIKQTN 132 (555)
T ss_dssp HHHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHCTHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhhccCCcHHHHHHHHHHHhccchhhhhHHHHHHHHHhc
Confidence 457777777655522 123567788889999999999999999987664
No 255
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=35.20 E-value=54 Score=26.92 Aligned_cols=12 Identities=8% Similarity=-0.009 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 033160 3 LDAISKLEEALM 14 (126)
Q Consensus 3 ~dAisKleeAL~ 14 (126)
++|+.-++.||.
T Consensus 357 ~eA~~~~~~aL~ 368 (433)
T 3qww_A 357 EGALKYGQKIIK 368 (433)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555555554
No 256
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=34.96 E-value=28 Score=26.70 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=19.1
Q ss_pred hhhhHHHHHHHHHHHHHh-hhcCCCCCCC
Q 033160 95 DIFGWVILAVGIVAWVGF-AKSHMPPPPP 122 (126)
Q Consensus 95 Dv~GWviLa~givaWvg~-Aks~~P~~~p 122 (126)
-|+|.|.+.+||-+|+-+ -|..+-+|+|
T Consensus 102 ~V~ggv~~~i~~s~~~f~~~r~~v~~p~P 130 (169)
T 2y69_D 102 TVVGAAMFFIGFTALLLIWEKHYVYGPIP 130 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 489999999998888544 4655533333
No 257
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=34.61 E-value=30 Score=26.92 Aligned_cols=16 Identities=31% Similarity=0.457 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHhc
Q 033160 19 EYFNKATLYFQQAVDE 34 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~ 34 (126)
..+++|.++|++|++.
T Consensus 345 ~~~~~A~~~~~~a~~~ 360 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAK 360 (490)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHC
Confidence 3556666666666654
No 258
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=34.33 E-value=31 Score=34.58 Aligned_cols=54 Identities=20% Similarity=0.330 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHhcCCCc------------------HHHHHHHH
Q 033160 2 ILDAISKLEEALM-----------------DEAKEYFNKATLYFQQAVDEEPSN------------------ELYQKSLE 46 (126)
Q Consensus 2 i~dAisKleeAL~-----------------~~A~~~f~kA~~~FqkAvd~dP~N------------------e~YkKsLe 46 (126)
+.+++..+++|+. -++.+.|++|.+||.|| .||++ +.|+++.+
T Consensus 1085 Lie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1085 LIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK 1162 (1630)
T ss_pred HHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q ss_pred HhhcCchhHHHH
Q 033160 47 VAAKAPELHMEI 58 (126)
Q Consensus 47 ~a~KAPelH~ei 58 (126)
.. +.|.+..++
T Consensus 1163 ~~-~e~~Idt~L 1173 (1630)
T 1xi4_A 1163 KA-RESYVETEL 1173 (1630)
T ss_pred hc-ccccccHHH
No 259
>1wwp_A Hypothetical protein TTHA0636; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 2.11A {Thermus thermophilus HB8}
Probab=33.98 E-value=87 Score=21.21 Aligned_cols=42 Identities=12% Similarity=-0.045 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHh-hcCchhHHHHHHhcc
Q 033160 22 NKATLYFQQAVDEEPSNELYQKSLEVA-AKAPELHMEIHKHGL 63 (126)
Q Consensus 22 ~kA~~~FqkAvd~dP~Ne~YkKsLe~a-~KAPelH~ei~kq~~ 63 (126)
.+|..-.+.+++.+|.|++++-++.-. ..+=|+=-.+-++.+
T Consensus 3 ~~al~~L~e~~~~~~~~~~~~dg~iq~fe~t~Elawk~~k~~l 45 (119)
T 1wwp_A 3 EKALATLKELAFLEDPSPVERDAAIQRFEYTFEAFWKALQAYL 45 (119)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444455555555444322 233333344444444
No 260
>2jvf_A De novo protein M7; tetrapeptide fragment-based protein design, artificial fold; NMR {Unidentified} SCOP: k.41.1.1
Probab=33.66 E-value=79 Score=22.06 Aligned_cols=30 Identities=30% Similarity=0.421 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM----------------DEAKEYFNKATLYFQQA 31 (126)
Q Consensus 2 i~dAisKleeAL~----------------~~A~~~f~kA~~~FqkA 31 (126)
++.|...||.||. ++|+++.+.-....||.
T Consensus 31 leralqelekalaragarnvqitisaendeqakelleliarllqkl 76 (96)
T 2jvf_A 31 LERALQELEKALARAGARNVQITISAENDEQAKELLELIARLLQKL 76 (96)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccceEEEEEecChHHHHHHHHHHHHHHHHh
Confidence 4567778888887 67777777766666653
No 261
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=30.27 E-value=36 Score=29.86 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=24.0
Q ss_pred HHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcCCCcHH
Q 033160 4 DAISKLEEALM---------------DEAKEYFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 4 dAisKleeAL~---------------~~A~~~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
|-|.+||++|. .+....++.|...|.+||...|.+..
T Consensus 50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~ 101 (679)
T 4e6h_A 50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMAN 101 (679)
T ss_dssp CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHH
Confidence 45677777777 12223466677777777777777653
No 262
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=30.23 E-value=2.1e+02 Score=22.74 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcH
Q 033160 17 AKEYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~dP~Ne 39 (126)
-++....|.+||..||..+|-|-
T Consensus 104 Ln~rrr~Ale~y~~ALq~~pP~~ 126 (219)
T 3pmr_A 104 INDQRRAALEGFLAALQADPPQA 126 (219)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCh
Confidence 35668899999999999998885
No 263
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=29.22 E-value=1.5e+02 Score=20.90 Aligned_cols=55 Identities=15% Similarity=0.247 Sum_probs=32.2
Q ss_pred HHHHHHHHH------HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH-----HHhhcCchhHHHHHHhccccc
Q 033160 6 ISKLEEALM------DEAKEYFNKATLYFQQAVDEEPSNELYQKSL-----EVAAKAPELHMEIHKHGLGQQ 66 (126)
Q Consensus 6 isKleeAL~------~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsL-----e~a~KAPelH~ei~kq~~~qq 66 (126)
|.+||+.|. ..|.+....|.. +++.||| |+-+.+| ++..-. .==.+|.|+++...
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~----~~e~DPD-evNk~~~~~R~~~V~~lq-~Ki~elkr~lAd~v 72 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAER----AVELDPD-DVNKSTLQSRRAAVSALE-TKLGELKRELADLI 72 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCC-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HhcCCCc-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 456666665 789999999975 5567995 5545544 333111 11245666665444
No 264
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=27.69 E-value=13 Score=30.39 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHh
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE------LYQKSLEVA 48 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne------~YkKsLe~a 48 (126)
.+++++|.++.++|+++|=... +|+.+++.=
T Consensus 5 ~~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l 41 (444)
T 2zan_A 5 NTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYF 41 (444)
T ss_dssp -------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 4578899999999998874332 566666543
No 265
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=26.49 E-value=67 Score=25.31 Aligned_cols=21 Identities=5% Similarity=-0.070 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHhcCCCcHH
Q 033160 20 YFNKATLYFQQAVDEEPSNEL 40 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne~ 40 (126)
.+++|.++|++|++.+|.+-.
T Consensus 194 ~~~~A~~~~~~aa~~g~~~a~ 214 (452)
T 3e4b_A 194 QQAELLKQMEAGVSRGTVTAQ 214 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSCHH
T ss_pred cHHHHHHHHHHHHHCCCHHHH
Confidence 789999999999999998876
No 266
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=26.32 E-value=1.6e+02 Score=20.25 Aligned_cols=33 Identities=12% Similarity=0.293 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDE--EPSNELYQKSLEV 47 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~--dP~Ne~YkKsLe~ 47 (126)
++|+++|.+..+.+.+++.. +..++.|-++=+|
T Consensus 36 ~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~L 70 (89)
T 3eab_A 36 EQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRL 70 (89)
T ss_dssp GGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHH
Confidence 56799999999999999885 4456667665443
No 267
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=26.18 E-value=56 Score=26.25 Aligned_cols=18 Identities=6% Similarity=0.067 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 033160 17 AKEYFNKATLYFQQAVDE 34 (126)
Q Consensus 17 A~~~f~kA~~~FqkAvd~ 34 (126)
.++.|++|.+.+++++..
T Consensus 223 ~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 223 QQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHTCHHHHHHHHHHHHSH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 444555555555544443
No 268
>3u8v_A Metal-binding protein SMBP; four helical bundle, metal chaperone; 1.90A {Nitrosomonas europaea}
Probab=25.85 E-value=1.1e+02 Score=21.60 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Q 033160 2 ILDAISKLEEALM-------DEAKEYFNKATLYFQQ 30 (126)
Q Consensus 2 i~dAisKleeAL~-------~~A~~~f~kA~~~Fqk 30 (126)
+.++|.-||+|+. +.|-..-++|.+-+++
T Consensus 52 ~~~aIKhLeeAI~Hg~~GHadvAtkhaeeAl~Hm~a 87 (93)
T 3u8v_A 52 VGHGIKHLEDAIKHGEEGHVGVATKHAQEAIEHLRA 87 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 4567888888887 5566666666555544
No 269
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=25.10 E-value=1.2e+02 Score=23.02 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 3 LDAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 3 ~dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
.+|+.-|+||..+-..++|+.|..|=..|
T Consensus 104 s~Al~ALQEAaEayLV~LFEdanLcAiHA 132 (156)
T 3r45_A 104 AQALLALQEAAEAFLVHLFEDAYLLTLHA 132 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 37888899999988889999998886665
No 270
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=25.05 E-value=1.3e+02 Score=20.33 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 3 LDAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 3 ~dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
.+|+.-|+||..+-..+.|+.|..|=..|
T Consensus 30 ~~Al~aLQea~E~ylv~Lfeda~lcAiHA 58 (82)
T 3nqj_A 30 AQALLALQEAAEAFLVHLFEDAYLLTLHA 58 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36888888888888888888888886665
No 271
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=24.96 E-value=43 Score=26.42 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHhcCCCcH
Q 033160 19 EYFNKATLYFQQAVDEEPSNE 39 (126)
Q Consensus 19 ~~f~kA~~~FqkAvd~dP~Ne 39 (126)
..+++|.++|++|. |+|.
T Consensus 231 ~d~~~A~~~~~~aa---~g~~ 248 (452)
T 3e4b_A 231 PDEKTAQALLEKIA---PGYP 248 (452)
T ss_dssp CCHHHHHHHHHHHG---GGST
T ss_pred CCHHHHHHHHHHHc---CCCH
Confidence 35678899999987 5554
No 272
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=24.23 E-value=1.2e+02 Score=20.49 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC--CcHHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQAVDEEP--SNELYQKSLE 46 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP--~Ne~YkKsLe 46 (126)
.+-++..+++.+-.+.+|+.+. +-+-|+..++
T Consensus 45 ~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~ 78 (120)
T 2p32_A 45 PEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQK 78 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHH
Confidence 4445556666666666776432 5566766663
No 273
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans}
Probab=24.19 E-value=2e+02 Score=21.99 Aligned_cols=31 Identities=13% Similarity=0.244 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHH-HhcCCCcHHHHHHH
Q 033160 15 DEAKEYFNKATLYFQQA-VDEEPSNELYQKSL 45 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkA-vd~dP~Ne~YkKsL 45 (126)
..|.+.|-.|..||.-| .=.+|+++......
T Consensus 86 ~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 117 (405)
T 3fnb_A 86 DLISHLYFSACFSIRAALQFTDPKDSEFMENF 117 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccHHHHH
Confidence 56788999999999999 55788887444333
No 274
>2d5u_A N-glycanase 1; pngase, hydrolase; NMR {Mus musculus} SCOP: d.314.1.1
Probab=24.14 E-value=14 Score=26.68 Aligned_cols=10 Identities=40% Similarity=0.806 Sum_probs=8.4
Q ss_pred cCCCcHHHHH
Q 033160 34 EEPSNELYQK 43 (126)
Q Consensus 34 ~dP~Ne~YkK 43 (126)
.+|+|+-||+
T Consensus 49 ~~P~e~KyRk 58 (124)
T 2d5u_A 49 RNPSDEKYRS 58 (124)
T ss_dssp HSSSCGGGSE
T ss_pred cCCCccccee
Confidence 5899999975
No 275
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=23.99 E-value=1.2e+02 Score=22.58 Aligned_cols=29 Identities=28% Similarity=0.196 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 3 LDAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 3 ~dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
.+|+.-|+||..+-..++|+.|..|=..|
T Consensus 88 ~~Al~ALQEAaEayLv~LFEdanlcAiHA 116 (140)
T 3nqu_A 88 AQALLALQEAAEAFLVHLFEDAYLLTLHA 116 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36888888888888888888888886654
No 276
>1s6c_B Potassium voltage-gated channel subfamily D membe; EF-hand, transport protein; 2.00A {Rattus norvegicus}
Probab=23.93 E-value=13 Score=21.44 Aligned_cols=13 Identities=31% Similarity=0.790 Sum_probs=2.7
Q ss_pred HHHHHHhhhcCCC
Q 033160 106 IVAWVGFAKSHMP 118 (126)
Q Consensus 106 ivaWvg~Aks~~P 118 (126)
.++|+=+|...+|
T Consensus 16 ~igw~P~a~~~~p 28 (30)
T 1s6c_B 16 AIGWMPVASGPMP 28 (30)
T ss_dssp HHTTCC-------
T ss_pred cccccccccCCCC
Confidence 3444444444443
No 277
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=23.44 E-value=85 Score=19.89 Aligned_cols=24 Identities=38% Similarity=0.765 Sum_probs=14.9
Q ss_pred hhHHHHHHH-HHHH-HHhhhcCCCCC
Q 033160 97 FGWVILAVG-IVAW-VGFAKSHMPPP 120 (126)
Q Consensus 97 ~GWviLa~g-ivaW-vg~Aks~~P~~ 120 (126)
+|=++|++. .+-| +||=|.+-||.
T Consensus 21 ~GLllL~li~~~LwK~GFFkR~~~~~ 46 (54)
T 2knc_A 21 GGLLLLTILVLAMWKVGFFKRNRPPL 46 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTCCSC
T ss_pred HHHHHHHHHHHHHHHcCcccCCCCCc
Confidence 344444444 4567 89988877654
No 278
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=23.34 E-value=1.4e+02 Score=19.91 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 033160 4 DAISKLEEALMDEAKEYFNKATLYFQQA 31 (126)
Q Consensus 4 dAisKleeAL~~~A~~~f~kA~~~FqkA 31 (126)
+|+.-|+||...-..+.|+.|..|=..|
T Consensus 29 ~Al~aLQea~Eaylv~lfeda~l~A~HA 56 (77)
T 2hue_B 29 SAVMALQEASEAYLVALFEDTNLCAIHA 56 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6777888888888888888887775544
No 279
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=23.02 E-value=1.6e+02 Score=19.83 Aligned_cols=42 Identities=21% Similarity=0.204 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHh-hcCchhHHHHHHhcc
Q 033160 21 FNKATLYFQQAVDEEPSNELYQKSLEVA-AKAPELHMEIHKHGL 63 (126)
Q Consensus 21 f~kA~~~FqkAvd~dP~Ne~YkKsLe~a-~KAPelH~ei~kq~~ 63 (126)
|++|..-.+.+++. |.|+.++-++.-. ..+=|+=-.+-++.+
T Consensus 4 ~~~al~~L~e~~~~-~~~~~~~dg~i~~fe~t~Elawk~~k~~l 46 (119)
T 1wty_A 4 LARAVERLKAALER-PKDEFIRDSAIQRFEFTFELAWKTLKTFL 46 (119)
T ss_dssp HHHHHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555544 4456555554322 333344444444443
No 280
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=22.86 E-value=1.4e+02 Score=18.43 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHH----HHHHH--HHHHHHHHHHHHHhcCCCcHHHHHHHH
Q 033160 2 ILDAISKLEEALM----DEAKE--YFNKATLYFQQAVDEEPSNELYQKSLE 46 (126)
Q Consensus 2 i~dAisKleeAL~----~~A~~--~f~kA~~~FqkAvd~dP~Ne~YkKsLe 46 (126)
++..|+.||++|. +-+.. -| +..--.+-+||.| =.+|||-||
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eY-q~LlniK~~Le~E--IatYRkLLE 52 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLV-GDLLNVKMALDIE--IATYRKLLE 52 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHH--HHHHHHHHc
Confidence 5778999999998 11111 11 1122233455544 368888886
No 281
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=22.48 E-value=43 Score=22.77 Aligned_cols=10 Identities=30% Similarity=0.597 Sum_probs=7.9
Q ss_pred ccCCCcchhh
Q 033160 87 KKSSDLKYDI 96 (126)
Q Consensus 87 kk~sDf~YDv 96 (126)
|-.++|-||.
T Consensus 4 kE~dPF~YDY 13 (72)
T 2jo1_A 4 KEHDPFTYDY 13 (72)
T ss_dssp HHHSGGGCST
T ss_pred ccCCCcccch
Confidence 3578999994
No 282
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=22.19 E-value=2.1e+02 Score=20.23 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcCchhHHHHHHhcc
Q 033160 15 DEAKEYFNKATLYFQQAVDEEPSNELYQKSLEVAAKAPELHMEIHKHGL 63 (126)
Q Consensus 15 ~~A~~~f~kA~~~FqkAvd~dP~Ne~YkKsLe~a~KAPelH~ei~kq~~ 63 (126)
..+.+.++.|.++|. +.|-+..++-.+.=.+.=+|+.+|.+...
T Consensus 25 ~~v~~~l~~a~~al~-----~~d~~~a~~v~~~d~~iD~l~~~i~~~~~ 68 (227)
T 1t72_A 25 KLVQEAIDKATEALN-----KQNVELAEEVIKGDDTIDLLEVDIERRCI 68 (227)
T ss_dssp HHHHHHHHHHHHHHH-----TTCHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-----HcCHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 445555555555542 55667778877777788888888888664
No 283
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=22.13 E-value=1.6e+02 Score=19.22 Aligned_cols=18 Identities=17% Similarity=0.006 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 033160 16 EAKEYFNKATLYFQQAVD 33 (126)
Q Consensus 16 ~A~~~f~kA~~~FqkAvd 33 (126)
+-++..+++..-.+.+|+
T Consensus 32 ~ek~~i~~~i~~l~~~L~ 49 (113)
T 1ud0_A 32 EDKQKILDKCNEIISWLD 49 (113)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555555554
No 284
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=21.37 E-value=87 Score=25.35 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHhhcCchhHHHHHH
Q 033160 18 KEYFNKATLYFQQAVDEEPSNE-LYQKSLEVAAKAPELHMEIHK 60 (126)
Q Consensus 18 ~~~f~kA~~~FqkAvd~dP~Ne-~YkKsLe~a~KAPelH~ei~k 60 (126)
+..|+||.+-|++-+..+|+|+ +-+|-|-+-.+=--.|.=||.
T Consensus 127 k~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqn 170 (235)
T 3bu8_A 127 NKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQN 170 (235)
T ss_dssp TTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHT
T ss_pred hcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHh
Confidence 3459999999999999999999 444555555555557887776
No 285
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=20.43 E-value=87 Score=20.68 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHhcCCCcH----HHHHHH
Q 033160 20 YFNKATLYFQQAVDEEPSNE----LYQKSL 45 (126)
Q Consensus 20 ~f~kA~~~FqkAvd~dP~Ne----~YkKsL 45 (126)
.+++|..+|-+|+..=|.=. .|+++|
T Consensus 32 ~~~~~~~hf~nAl~Vc~qP~~LL~i~q~tl 61 (73)
T 3ax2_A 32 DYEKGVDHLTNAIAVCGQPQQLLQVLQQTL 61 (73)
T ss_dssp CHHHHHHHHHHHHHTCSSCHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 38899999999999887543 566665
Done!