BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033161
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DFN1|NDUF3_XENTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1
Length = 183
Score = 83.6 bits (205), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 65/108 (60%)
Query: 14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
+++S+GF +NG + G I +L W + +I LS+F ++ P EIL++G G
Sbjct: 67 TYSSQGFIINGDKVVGPCAVIPKAILQWNVGSYKDINLESLSLFHMLSPRIEILVVGTGD 126
Query: 74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
+E ++P + +F+R G+ +E D+ NA +T+N L E RI AAAL+P
Sbjct: 127 RVERLDPNILKFMRQKGVAVEVQDTANACATFNFLVSERRITAAALIP 174
>sp|Q9JKL4|NDUF3_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Mus musculus GN=Ndufaf3 PE=2 SV=1
Length = 185
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 64/108 (59%)
Query: 14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
S++S+GFT+ G + G + + ++ W +IT S+F ++ P EI+++G G
Sbjct: 63 SYSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLFWMLEPRIEIVVVGTGN 122
Query: 74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
E ++P++ Q +R G+ +E D+ NA +T+N L EGR+ AAL+P
Sbjct: 123 KTERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 170
>sp|O08776|NDUF3_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Rattus norvegicus GN=Ndufaf3 PE=2 SV=1
Length = 185
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 62/108 (57%)
Query: 14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
S+ S+GFT+NG + G + ++ W +IT SIF ++ P EI+++G G
Sbjct: 63 SYNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIFWMLEPRIEIVVVGTGN 122
Query: 74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
E ++ ++ Q +R G+ +E D+ NA +T+N L EGR+ AAL+P
Sbjct: 123 KTERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGAALIP 170
>sp|Q2HJI2|NDUF3_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Bos taurus GN=NDUFAF3 PE=2 SV=1
Length = 184
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%)
Query: 14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
S++S+GF VNG + G + ++ W + +IT S+F ++ P EI+++G G
Sbjct: 62 SYSSRGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGD 121
Query: 74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
E + P + + +R G+ +E D+ NA +T+N L EGR+ AAL+P
Sbjct: 122 RTERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169
>sp|Q9BU61|NDUF3_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Homo sapiens GN=NDUFAF3 PE=1 SV=1
Length = 184
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 62/108 (57%)
Query: 14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
S+ S+GF +NG + G + + ++ W +IT + S+F L+ P EI+++G G
Sbjct: 62 SYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGD 121
Query: 74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
E + ++ Q +R G+ +E D+ NA +T+N L EGR+ AAL+P
Sbjct: 122 RTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169
>sp|A1L1F1|NDUF3_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor
3 OS=Danio rerio GN=ndufaf3 PE=2 SV=1
Length = 174
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%)
Query: 14 SFASKGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGR 73
S++ +GF +NG G + +L W S+I+ LS+F L+ P E+L+LG G
Sbjct: 61 SYSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGA 120
Query: 74 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGR 113
E ++ E+ + ++ G+ +E D+ NA +T+N L+ E R
Sbjct: 121 RTERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKR 160
>sp|P29962|Y1784_RHOCB Uncharacterized protein RCAP_rcc01784 OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=RCAP_rcc01784 PE=4 SV=1
Length = 124
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 20 FTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVN 79
F + G + G LL + WT F + L+ + + ++L+ G G I +
Sbjct: 22 FRIAGAVHRGGLLIHAEAAMPWT--GFDD-----LAALRALAGQVDLLLCGMGADIAHLP 74
Query: 80 PELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 121
L+ + + G+ E + + +AA YN+L EGR V AALLP
Sbjct: 75 KGLQVELEALGVMAEPMSTASAARHYNVLLSEGRRVGAALLP 116
>sp|P48508|GSH0_RAT Glutamate--cysteine ligase regulatory subunit OS=Rattus norvegicus
GN=Gclm PE=1 SV=1
Length = 274
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 33 CIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMK 92
CI L W+ S+I+P+ LVR P++L +E +NP+ R+ ++ + K
Sbjct: 46 CIQKTLNEWS----SQISPD------LVREFPDVLECTMSHAVEKINPDEREEMKVSA-K 94
Query: 93 LEAIDSRNAASTYNILNEEGRIVAAALL 120
L + S +++ST N ++ ++ A L
Sbjct: 95 LFIVGSNSSSSTRNAVDMACSVLGVAQL 122
>sp|Q2T9Y6|GSH0_BOVIN Glutamate--cysteine ligase regulatory subunit OS=Bos taurus GN=GCLM
PE=2 SV=1
Length = 274
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 33 CIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMK 92
CI L W+ S+I+P+ L+R P++L +E +NP+ R+ ++ + K
Sbjct: 46 CIQKTLNEWS----SQISPD------LIREFPDVLECTVSHAVEKINPDEREEMKVSA-K 94
Query: 93 LEAIDSRNAASTYNILNEEGRIVAAALL 120
L + S +++ST N ++ ++ A L
Sbjct: 95 LFIVGSNSSSSTRNAVDMACSVLGVAQL 122
>sp|Q54P72|Y4753_DICDI Probable acid phosphatase DDB_G0284753 OS=Dictyostelium discoideum
GN=DDB_G0284753 PE=3 SV=1
Length = 464
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 57 FQLVRPIPEILILGCGRYIEPVNPELR 83
F+ R PE+ ILG GR+++ +N EL+
Sbjct: 300 FKSARYFPEMSILGIGRFVDDLNKELK 326
>sp|O09172|GSH0_MOUSE Glutamate--cysteine ligase regulatory subunit OS=Mus musculus
GN=Gclm PE=2 SV=1
Length = 274
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Query: 33 CIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIR 87
CI L W+ S+I+P+ LVR P++L +E +NP+ R+ ++
Sbjct: 46 CIQKTLNEWS----SQISPD------LVREFPDVLECTMSHAVEKINPDEREEMK 90
>sp|P48507|GSH0_HUMAN Glutamate--cysteine ligase regulatory subunit OS=Homo sapiens
GN=GCLM PE=1 SV=1
Length = 274
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 33 CIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG 90
CI L W+ S+I P+ LVR P++L +E +NP+ R+ ++ +
Sbjct: 46 CIQKTLNEWS----SQINPD------LVREFPDVLECTVSHAVEKINPDEREEMKVSA 93
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,581,678
Number of Sequences: 539616
Number of extensions: 1598576
Number of successful extensions: 3682
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3674
Number of HSP's gapped (non-prelim): 14
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)