BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033164
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JZK|A Chain A, Structure Of Tbcvnh (T. Borchii Cvnh) (Casp Target)
Length = 106
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 26 GLPSLAKTSFKI-VAKGGKIKTDKPYGVNGGMDLREGLDASG-RKAKGKGVYQ 76
G+ + + +S I + +GG+ T +P V+GG R+G+D + + G+ V+Q
Sbjct: 54 GMQNFSHSSEDIKLEEGGRKLTCRPKTVDGGFRERQGIDLNRIQNVNGRLVFQ 106
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 16 PFTVEKSAARGLPSLAKTSFKIVAKGGKIKTD 47
P T+E + +G+P L K +F+ ++G I D
Sbjct: 269 PRTIEPAMEKGIPILVKNTFEPESEGTLITND 300
>pdb|4AW7|A Chain A, Bpgh86a: A Beta-Porphyranase Of Glycoside Hydrolase Family
86 From The Human Gut Bacterium Bacteroides Plebeius
Length = 591
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 77 FVDKYGANVDGYSGDVYTGGATG 99
F+D+ GA +DG+S +Y G TG
Sbjct: 215 FIDRAGAYMDGFSVHLYDGIVTG 237
>pdb|3V6N|A Chain A, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
pdb|3V6N|B Chain B, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
pdb|4HSD|A Chain A, Crystal Structure Of A New Form Of Plant Lectin From Cicer
Arietinum At 2.45 Angstrom Resolution
pdb|4HSD|B Chain B, Crystal Structure Of A New Form Of Plant Lectin From Cicer
Arietinum At 2.45 Angstrom Resolution
Length = 227
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 36 KIVAKGGKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFV-DKYGANVD 86
KI++ KI P+ G G+DA+ R KGK VY F DKY A +D
Sbjct: 96 KIISGPKKIADMFPFF--KGTVFENGIDAAFRSTKGKEVYLFKGDKY-ARID 144
>pdb|3S18|A Chain A, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
pdb|3S18|B Chain B, Crystal Structure Of A Plant Albumin From Cicer Arietinum
Showing Hemagglutination
Length = 227
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 36 KIVAKGGKIKTDKPYGVNGGMDLREGLDASGRKAKGKGVYQFV-DKYGANVD 86
KI++ KI P+ G G+DA+ R KGK VY F DKY A +D
Sbjct: 96 KIISGPKKIADMFPFF--KGTVFENGIDAAFRSTKGKEVYLFKGDKY-ARID 144
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 16 PFTVEKSAARGLPSLAKTSFKIVAKGGKIKTD 47
P T+E + +G+P L K +F+ ++G I D
Sbjct: 270 PRTIEPAMEKGIPILVKNTFEPESEGTLITND 301
>pdb|1HSL|A Chain A, Refined 1.89 Angstroms Structure Of The Histidine-Binding
Protein Complexed With Histidine And Its Relationship
With Many Other Active Transport(Slash)chemosensory
Receptors
pdb|1HSL|B Chain B, Refined 1.89 Angstroms Structure Of The Histidine-Binding
Protein Complexed With Histidine And Its Relationship
With Many Other Active Transport(Slash)chemosensory
Receptors
pdb|1HPB|P Chain P, The Bacterial Periplasmic Histidine-Binding Protein:
Structure(Slash)function Analysis Of The Ligand-Binding
Site And Comparison With Related Proteins
Length = 238
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 7/57 (12%)
Query: 41 GGKIKTDKPYGVNGGM-------DLREGLDASGRKAKGKGVYQFVDKYGANVDGYSG 90
G +K +K +GV GM +LRE L+ + + + G Y+ + K + D Y G
Sbjct: 182 GPAVKDEKLFGVGTGMGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.133 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,483,317
Number of Sequences: 62578
Number of extensions: 149309
Number of successful extensions: 234
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 227
Number of HSP's gapped (non-prelim): 9
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)