Query 033164
Match_columns 126
No_of_seqs 51 out of 53
Neff 2.3
Searched_HMMs 29240
Date Mon Mar 25 17:26:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ik9_C DNA ligase IV; DNA END 31.3 16 0.00054 21.4 0.9 17 81-98 7-23 (37)
2 1qhk_A RNAse HI, protein (ribo 23.9 29 0.001 20.8 1.2 28 68-95 8-35 (47)
3 3arc_H Photosystem II reaction 11.8 74 0.0025 21.3 0.9 30 96-125 25-54 (65)
4 1vf5_F Protein PET M; photosyn 10.0 1.2E+02 0.0042 17.9 1.4 17 98-114 8-24 (35)
5 2wsc_K Photosystem I reaction 9.5 65 0.0022 24.0 0.0 36 1-39 1-42 (131)
6 1q90_M Cytochrome B6F complex 9.4 1.3E+02 0.0045 18.2 1.4 18 98-115 9-26 (39)
7 3bsu_A Ribonuclease H1, RNAse 9.3 50 0.0017 20.2 -0.6 27 69-95 11-37 (53)
8 2e61_A Zinc finger CW-type PWW 8.9 1.2E+02 0.0041 19.7 1.1 11 64-74 2-12 (69)
9 1csh_A Citrate synthase; lyase 8.1 37 0.0013 28.6 -2.0 12 83-94 370-381 (435)
10 1sou_A 5,10-methenyltetrahydro 8.1 98 0.0033 22.5 0.5 15 61-75 121-136 (194)
No 1
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=31.26 E-value=16 Score=21.38 Aligned_cols=17 Identities=29% Similarity=0.538 Sum_probs=11.9
Q ss_pred ccccccCCCCceeccchh
Q 033164 81 YGANVDGYSGDVYTGGAT 98 (126)
Q Consensus 81 yGANVDgYSGD~Y~gG~~ 98 (126)
+=.|+|-| ||+|.-.++
T Consensus 7 ~~~n~D~y-GDSY~rd~t 23 (37)
T 1ik9_C 7 FAREYDCY-GDSYFIDTD 23 (37)
T ss_dssp -CCSBCTT-SCBSSSCCC
T ss_pred HHHhcccc-cccccCcCC
Confidence 34688888 788876654
No 2
>1qhk_A RNAse HI, protein (ribonuclease HI); ribonuclease HI N-terminal domain, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.100.1.2
Probab=23.94 E-value=29 Score=20.84 Aligned_cols=28 Identities=32% Similarity=0.719 Sum_probs=20.8
Q ss_pred CccCCeeEEecccccccccCCCCceecc
Q 033164 68 KAKGKGVYQFVDKYGANVDGYSGDVYTG 95 (126)
Q Consensus 68 kgKg~gVYqf~~kyGANVDgYSGD~Y~g 95 (126)
+|+--|||.==+.-=+.|+||+|-.|++
T Consensus 8 ~G~~~GIy~sW~ec~~qV~g~~ga~yK~ 35 (47)
T 1qhk_A 8 KGRETGIYNTWNECKNQVDGYGGAIYKK 35 (47)
T ss_dssp SSSSCEEEEEHHHHHHHSSSCSSCCCEE
T ss_pred eCCCCceECCHHHHHHHhcCCCCCccCC
Confidence 4455699975555558899999988875
No 3
>3arc_H Photosystem II reaction center protein H; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3kzi_H* 3bz1_H* 1s5l_H* 2axt_H* 3bz2_H* 3prq_H* 3prr_H* 3a0b_H* 3a0h_H*
Probab=11.85 E-value=74 Score=21.33 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=22.0
Q ss_pred chhHHHHHHHHHHHHhhhceeeeeeccccc
Q 033164 96 GATGLAIWAVTLAGLLAGGALLVYNTSALA 125 (126)
Q Consensus 96 G~~gL~~wA~tl~glL~~GallVy~TSaLa 125 (126)
|||-+..-+..+..+...=.+-|||.|-|-
T Consensus 25 GTtplMgv~m~Lf~vFl~iiLeIYNsSvlL 54 (65)
T 3arc_H 25 GTTPLMAVFMGLFLVFLLIILEIYNSTLIL 54 (65)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred cChhHHHHHHHHHHHHHHHHHHHhCcceee
Confidence 788887666666666666678899988653
No 4
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=10.00 E-value=1.2e+02 Score=17.94 Aligned_cols=17 Identities=18% Similarity=0.259 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHhhhc
Q 033164 98 TGLAIWAVTLAGLLAGG 114 (126)
Q Consensus 98 ~gL~~wA~tl~glL~~G 114 (126)
+..+.|..+++|+..+=
T Consensus 8 ~A~i~~~LvLvGla~Gf 24 (35)
T 1vf5_F 8 AALLSFGLIFVGWGLGV 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45778999999986543
No 5
>2wsc_K Photosystem I reaction center subunit PSAK, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Hordeum vulgare} PDB: 2wse_K* 2wsf_K* 3lw5_K*
Probab=9.52 E-value=65 Score=23.98 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=0.0
Q ss_pred Ccccccc--c---cccccCCccccccccccCCCCC-ccceeEEee
Q 033164 1 MAASVMA--S---SLSLKPAPFTVEKSAARGLPSL-AKTSFKIVA 39 (126)
Q Consensus 1 Maasvm~--s---s~~lkps~f~~~~~~~rglp~l-~R~~~~v~a 39 (126)
||+|+|+ | .--|+|++ ...+.+.+|+. .|+++.|.|
T Consensus 1 ma~~~~~~~~~p~f~glr~~~---~~~~~~~~~~~~~r~~~~~r~ 42 (131)
T 2wsc_K 1 MASQLSAMTSVPQFHGLRTYS---SPRSMATLPSLRRRRSQGIRC 42 (131)
T ss_dssp ---------------------------------------------
T ss_pred CcchhhccccCcccccccccC---CccccccccccccccceeeEe
Confidence 7887733 1 11345533 12245556555 445565555
No 6
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=9.43 E-value=1.3e+02 Score=18.22 Aligned_cols=18 Identities=39% Similarity=0.488 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHhhhce
Q 033164 98 TGLAIWAVTLAGLLAGGA 115 (126)
Q Consensus 98 ~gL~~wA~tl~glL~~Ga 115 (126)
+..+.|..+|+|+..+=.
T Consensus 9 ~A~i~~~L~LvGla~Gf~ 26 (39)
T 1q90_M 9 TALTMVGMTLVGLAIGFV 26 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457789999999865433
No 7
>3bsu_A Ribonuclease H1, RNAse H1; RNAse H, RNA/DNA hybrid; HET: DNA 5IU; 2.10A {Homo sapiens}
Probab=9.28 E-value=50 Score=20.24 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=19.3
Q ss_pred ccCCeeEEecccccccccCCCCceecc
Q 033164 69 AKGKGVYQFVDKYGANVDGYSGDVYTG 95 (126)
Q Consensus 69 gKg~gVYqf~~kyGANVDgYSGD~Y~g 95 (126)
|+--|||.==+.-=+.|+||+|-.|+.
T Consensus 11 G~~~GIy~sW~ec~~qV~g~~ga~yK~ 37 (53)
T 3bsu_A 11 GRKTGVFLTWNECRAQVDRFPAARFKK 37 (53)
T ss_dssp SSSCEEESSHHHHHHHHTTCTTCEEEE
T ss_pred CCCCceECCHHHHHHHhcCCCCCccCC
Confidence 444678875444557899999988875
No 8
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=8.89 E-value=1.2e+02 Score=19.66 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=9.2
Q ss_pred CCCCCccCCee
Q 033164 64 ASGRKAKGKGV 74 (126)
Q Consensus 64 asGRkgKg~gV 74 (126)
.+||||++-++
T Consensus 2 ~~~~~~~~~~~ 12 (69)
T 2e61_A 2 SSGSSGEISGF 12 (69)
T ss_dssp CCCCSSCSSSC
T ss_pred CCcccccCCCC
Confidence 57999998876
No 9
>1csh_A Citrate synthase; lyase(OXO-acid); HET: AMX; 1.65A {Gallus gallus} SCOP: a.103.1.1 PDB: 1amz_A* 1csi_A* 1csr_A* 1css_A* 1al6_A* 6csc_A* 2cts_A* 3enj_A 1cts_A 4cts_A 1csc_A* 2csc_A* 3csc_A* 4csc_A* 5csc_A 5cts_A* 6cts_A* 5csc_B
Probab=8.14 E-value=37 Score=28.56 Aligned_cols=12 Identities=42% Similarity=0.506 Sum_probs=9.7
Q ss_pred ccccCCCCceec
Q 033164 83 ANVDGYSGDVYT 94 (126)
Q Consensus 83 ANVDgYSGD~Y~ 94 (126)
.|||.|||=+|.
T Consensus 370 pNVDf~sg~i~~ 381 (435)
T 1csh_A 370 PNVDAHSGVLLQ 381 (435)
T ss_dssp BCTHHHHHHHHH
T ss_pred CChHHHHHHHHH
Confidence 899999966654
No 10
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=8.12 E-value=98 Score=22.53 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=12.1
Q ss_pred CcCCC-CCCccCCeeE
Q 033164 61 GLDAS-GRKAKGKGVY 75 (126)
Q Consensus 61 gvDas-GRkgKg~gVY 75 (126)
++|.+ .|-|.|+|-|
T Consensus 121 afD~~G~RLG~GgGyY 136 (194)
T 1sou_A 121 AFDLEGYRLGFGKGYY 136 (194)
T ss_dssp CBCSSSCBCCSCCSSH
T ss_pred EECCCCceeccCCcHH
Confidence 56766 5899999988
Done!