Query 033164
Match_columns 126
No_of_seqs 51 out of 53
Neff 2.3
Searched_HMMs 13730
Date Mon Mar 25 17:26:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033164.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033164hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dlja3 c.26.3.1 (A:295-402) U 14.1 7.5 0.00054 24.5 -1.9 34 55-89 22-55 (108)
2 d1d5ra1 b.7.1.1 (A:188-351) Pt 13.4 87 0.0063 20.4 3.5 40 13-52 2-45 (141)
3 d1qhka_ d.100.1.2 (A:) N-termi 11.4 42 0.0031 18.8 1.2 27 69-95 9-35 (47)
4 d1uala_ c.116.1.4 (A:) tRNA(m1 9.8 39 0.0029 25.3 0.7 18 43-60 49-66 (252)
5 d1soua_ c.124.1.6 (A:) Hypothe 9.8 36 0.0026 23.0 0.5 16 61-76 121-137 (194)
6 d1oy5a_ c.116.1.4 (A:) tRNA(m1 9.3 43 0.0031 24.7 0.8 18 43-60 47-64 (232)
7 d1mk0a_ d.226.1.1 (A:) Homing 8.4 58 0.0042 19.1 1.0 21 73-100 4-24 (97)
8 d1mv8a3 c.26.3.1 (A:301-436) G 7.3 17 0.0012 22.9 -2.1 34 55-89 20-53 (136)
9 d2j2za2 b.7.2.1 (A:125-217) Pa 7.3 1E+02 0.0073 18.8 1.8 15 72-86 64-78 (93)
10 d2axth1 f.23.33.1 (H:2-65) Pho 7.2 68 0.005 19.9 0.9 30 96-125 25-54 (64)
No 1
>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}
Probab=14.13 E-value=7.5 Score=24.49 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=28.0
Q ss_pred CcccCCCcCCCCCCccCCeeEEecccccccccCCC
Q 033164 55 GMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYS 89 (126)
Q Consensus 55 gm~~k~gvDasGRkgKg~gVYqf~~kyGANVDgYS 89 (126)
|+.+|.++|- -|--...-+++.-.++|++|..|-
T Consensus 22 Gl~fK~n~dD-~R~Sp~i~ii~~L~~~g~~v~iyD 55 (108)
T d1dlja3 22 RLIMKSNSDN-FRESAIKDVIDILKSKDIKIIIYE 55 (108)
T ss_dssp CCCSSTTCSC-CTTCHHHHHHHHHHTSSCEEEEEC
T ss_pred EEEECCCCcc-hhhhhHHHHHHHHhccccceeeec
Confidence 6789999985 577777888888889999998774
No 2
>d1d5ra1 b.7.1.1 (A:188-351) Pten tumor suppressor (Phoshphoinositide phosphatase), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.36 E-value=87 Score=20.37 Aligned_cols=40 Identities=15% Similarity=0.232 Sum_probs=28.6
Q ss_pred cCCccccccccccCCCCCc----cceeEEeecCceeeccccccc
Q 033164 13 KPAPFTVEKSAARGLPSLA----KTSFKIVAKGGKIKTDKPYGV 52 (126)
Q Consensus 13 kps~f~~~~~~~rglp~l~----R~~~~v~asggKikt~kp~G~ 52 (126)
+|.+..+..-.++++|... |+-|+|...+.|+-+++++..
T Consensus 2 ~P~~L~L~~I~l~~vP~f~~ggCrP~~~I~~~~~~v~ts~~~~~ 45 (141)
T d1d5ra1 2 RPVALLFHKMMFETIPMFSGGTCNPQFVVCQLKVKIYSSNSGPT 45 (141)
T ss_dssp CCCEEEEEEEEESSCCCSBTTBCCEEEEEEETTEEEEECCSSCS
T ss_pred CCEeEEEEEEEEECCCccCCCeeEEEEEEEcCCeEEEecCcEeE
Confidence 5666666666677777764 578888877779888876544
No 3
>d1qhka_ d.100.1.2 (A:) N-terminal domain of RNase HI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=11.44 E-value=42 Score=18.77 Aligned_cols=27 Identities=30% Similarity=0.706 Sum_probs=19.1
Q ss_pred ccCCeeEEecccccccccCCCCceecc
Q 033164 69 AKGKGVYQFVDKYGANVDGYSGDVYTG 95 (126)
Q Consensus 69 gKg~gVYqf~~kyGANVDgYSGD~Y~g 95 (126)
|+--|||.==+.-=..|+||+|-.|+.
T Consensus 9 G~~~GIy~~W~e~~~~V~g~~ga~~k~ 35 (47)
T d1qhka_ 9 GRETGIYNTWNECKNQVDGYGGAIYKK 35 (47)
T ss_dssp SSSCEEEEEHHHHHHHSSSCSSCCCEE
T ss_pred CCCCCccCCHHHHHHHhcCCCCCeECC
Confidence 344588875444457899999888764
No 4
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]}
Probab=9.81 E-value=39 Score=25.26 Aligned_cols=18 Identities=39% Similarity=0.591 Sum_probs=14.1
Q ss_pred eeecccccccCCCcccCC
Q 033164 43 KIKTDKPYGVNGGMDLRE 60 (126)
Q Consensus 43 Kikt~kp~G~~ggm~~k~ 60 (126)
+.--|+|||.+.||-.|-
T Consensus 49 r~VDD~PyGGGpGMVmk~ 66 (252)
T d1uala_ 49 KTVDDRPYGGGPGMLMMV 66 (252)
T ss_dssp CCCEECCTTCCSCCEECH
T ss_pred cCcCCCcCCCCCcceeec
Confidence 334478999999998875
No 5
>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]}
Probab=9.76 E-value=36 Score=22.97 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=12.1
Q ss_pred CcCCC-CCCccCCeeEE
Q 033164 61 GLDAS-GRKAKGKGVYQ 76 (126)
Q Consensus 61 gvDas-GRkgKg~gVYq 76 (126)
+.|.+ .|-|.|+|-|.
T Consensus 121 afD~~G~RlG~G~GyYD 137 (194)
T d1soua_ 121 AFDLEGYRLGFGKGYYD 137 (194)
T ss_dssp CBCSSSCBCCSCCSSHH
T ss_pred HHhhcCCccccCCEeHH
Confidence 55655 48999999884
No 6
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]}
Probab=9.33 E-value=43 Score=24.73 Aligned_cols=18 Identities=39% Similarity=0.493 Sum_probs=13.9
Q ss_pred eeecccccccCCCcccCC
Q 033164 43 KIKTDKPYGVNGGMDLRE 60 (126)
Q Consensus 43 Kikt~kp~G~~ggm~~k~ 60 (126)
|---|+|||.+.||-+|-
T Consensus 47 k~VDD~PyGGGpGMVm~~ 64 (232)
T d1oy5a_ 47 GQVDDVPYGGLPGMVLKP 64 (232)
T ss_dssp SCCEECBSSCCSSCEECH
T ss_pred CCcCccccCCCCceEEeh
Confidence 334578999999998764
No 7
>d1mk0a_ d.226.1.1 (A:) Homing endonuclease I-TevI {Bacteriophage T4 [TaxId: 10665]}
Probab=8.44 E-value=58 Score=19.09 Aligned_cols=21 Identities=33% Similarity=0.737 Sum_probs=15.5
Q ss_pred eeEEecccccccccCCCCceeccchhHH
Q 033164 73 GVYQFVDKYGANVDGYSGDVYTGGATGL 100 (126)
Q Consensus 73 gVYqf~~kyGANVDgYSGD~Y~gG~~gL 100 (126)
|||++.++- .|..|.|-++.|
T Consensus 4 GIY~i~n~~-------ngk~YIG~t~nl 24 (97)
T d1mk0a_ 4 GIYQIKNTL-------NNKVYVGSAKDF 24 (97)
T ss_dssp EEEEEEETT-------TCCEEEEEESSH
T ss_pred EEEEEEECC-------CCeEEEEEeCcH
Confidence 799996542 467888887765
No 8
>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=7.32 E-value=17 Score=22.93 Aligned_cols=34 Identities=15% Similarity=0.247 Sum_probs=26.2
Q ss_pred CcccCCCcCCCCCCccCCeeEEecccccccccCCC
Q 033164 55 GMDLREGLDASGRKAKGKGVYQFVDKYGANVDGYS 89 (126)
Q Consensus 55 gm~~k~gvDasGRkgKg~gVYqf~~kyGANVDgYS 89 (126)
|++||.++|- -|--..--+.+.-.+.|++|..|-
T Consensus 20 GlafK~~t~D-~R~Sps~~li~~L~~~g~~V~~~D 53 (136)
T d1mv8a3 20 GLSFKAGTDD-LRESPLVELAEMLIGKGYELRIFD 53 (136)
T ss_dssp CCSSSTTCCC-CTTCHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEECCCCcc-hhcCHHHHHHHHHhhhhccccccC
Confidence 6889988874 566667777777778888888774
No 9
>d2j2za2 b.7.2.1 (A:125-217) PapD {Escherichia coli [TaxId: 562]}
Probab=7.25 E-value=1e+02 Score=18.76 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=12.9
Q ss_pred CeeEEeccccccccc
Q 033164 72 KGVYQFVDKYGANVD 86 (126)
Q Consensus 72 ~gVYqf~~kyGANVD 86 (126)
+-+|+|.+-||+.++
T Consensus 64 ~~~~~~INDyGg~~~ 78 (93)
T d2j2za2 64 TPYLSYINDYGGRPV 78 (93)
T ss_dssp SCEEEECCTTSCCCE
T ss_pred eEEEEEEeCCCCCce
Confidence 457999999999887
No 10
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.19 E-value=68 Score=19.87 Aligned_cols=30 Identities=23% Similarity=0.176 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHHHhhhceeeeeeccccc
Q 033164 96 GATGLAIWAVTLAGLLAGGALLVYNTSALA 125 (126)
Q Consensus 96 G~~gL~~wA~tl~glL~~GallVy~TSaLa 125 (126)
|||-+.--+..+..+...=.+=|||.|-|-
T Consensus 25 GTTplMgv~m~Lf~vfl~iiLeiYNss~ll 54 (64)
T d2axth1 25 GTTPLMAVFMGLFLVFLLIILEIYNSTLIL 54 (64)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhccceee
Confidence 777776555555555555566789988763
Done!