BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033165
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M3P|A Chain A, Crystal Structure Of Glutamine Amido Transferase From
Methylobacillus Flagellatus
Length = 250
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 24 GYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83
G+FG F LA E + V R + P + G G A+ + W L+A
Sbjct: 18 GHFGDF---LAGEHIPFQVLRXDRSD-PLPAEIRDCSGLAXXGGPXSANDDLPWXPTLLA 73
Query: 84 LLKQLDSLRKKVLGICFGHQVRA 106
L++ + R V+G C G Q+ A
Sbjct: 74 LIRDAVAQRVPVIGHCLGGQLLA 96
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 52 DDDDFGSYDGYVI-TGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
D D YD V+ G + + D I +L A L+ L K + +C HQ+
Sbjct: 480 DAVDLARYDVVVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGKPFMAVCLSHQI 533
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 52 DDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS 111
D + DG V++G + D + KL ++ K +D +LGIC G Q A+ +
Sbjct: 48 DSSELDGLDGLVLSGGAPNI---DEELDKLGSVGKYIDDHNYPILGICVGAQFIALHFGA 104
Query: 112 SHINA 116
S + A
Sbjct: 105 SVVKA 109
>pdb|3IMH|A Chain A, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
pdb|3IMH|B Chain B, Crystal Structure Of Galactose 1-Epimerase From
Lactobacillus Acidophilus Ncfm
Length = 338
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 54 DDFGSYDGYVITGSCNDAHGNDVWICKLIALLK 86
++ G YDG C A GND+ L+ K
Sbjct: 288 NNIGQYDGITFEAQCPPAEGNDLGQITLLPFEK 320
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 84 LLKQLDSLRKKVLGICFGHQVRA 106
+L+ D +LGIC GHQ+ A
Sbjct: 64 VLEHYDEFNVPILGICLGHQLIA 86
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 84 LLKQLDSLRKKVLGICFGHQVRA 106
+L+ D +LGIC GHQ+ A
Sbjct: 84 VLEHYDEFNVPILGICLGHQLIA 106
>pdb|2YU1|A Chain A, Crystal Structure Of Hjhdm1a Complexed With
A-ketoglutarate
pdb|2YU2|A Chain A, Crystal Structure Of Hjhdm1a Without A-Ketoglutarate
Length = 451
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 21 KYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWIC 79
KY F F+ EG+ ++V ++ RG D F + DG I D NDV +C
Sbjct: 48 KYNANFVTFM-----EGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMC 101
>pdb|3UT2|A Chain A, Crystal Structure Of Fungal Magkatg2
pdb|3UT2|B Chain B, Crystal Structure Of Fungal Magkatg2
Length = 764
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETW 40
KK L E ++ +G Y G+FVRM T+
Sbjct: 88 KKDIAALMTESQDWWPADFGNYGGLFVRMAXHSAGTY 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,220,885
Number of Sequences: 62578
Number of extensions: 178476
Number of successful extensions: 341
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 335
Number of HSP's gapped (non-prelim): 11
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)