BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033165
(126 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q12288|YL126_YEAST Putative glutamine amidotransferase YLR126C OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YLR126C PE=1
SV=1
Length = 251
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 67/126 (53%), Gaps = 15/126 (11%)
Query: 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE--------EGETWDVFHVARGEFPD 52
M KK A+L ED+E+ K +G + + +++L + E ++VFHV + FP
Sbjct: 1 MTVKKIAILYTDEDNEW-SKPWGNFVDMAIKLLEQTRKLECIAEDVEYEVFHVQKNVFPQ 59
Query: 53 DDDFG--SYDGYVITGSCNDAHGNDV-WICKLIALLKQLDSLRKK---VLGICFGHQVRA 106
D Y G ITGS D+ N++ WI KL + L ++ + + + V GICFGHQV A
Sbjct: 60 LSDLQKDEYLGIYITGSKYDSFDNEIEWIMKLRSFLNEMLTSKTEYPPVAGICFGHQVIA 119
Query: 107 ITVFSS 112
+ SS
Sbjct: 120 AALGSS 125
>sp|Q09686|YA14_SCHPO Putative glutamine amidotransferase-like protein C13C5.04
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC13C5.04 PE=4 SV=1
Length = 248
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 38 ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRK---- 93
+T++V+ ++P +DF + + +ITGS A + WI KLI+ +K D L K
Sbjct: 48 KTYEVYK-NPNDYPQKEDFPNINAIIITGSKASATSDAPWIKKLISFVK--DVLFKYPHI 104
Query: 94 KVLGICFGHQVRA 106
K++G+CFGHQ+ A
Sbjct: 105 KIVGLCFGHQIVA 117
>sp|Q466W7|COBQ_METBF Probable cobyric acid synthase OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=cobQ PE=3 SV=1
Length = 485
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 53 DDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKV--LGICFGHQVRAITVF 110
D+D G+ D +I G+ N ND+ K + +++ + + K+ GIC G+Q+ T++
Sbjct: 282 DEDLGTPDAIMIPGTKNTV--NDLLDLKASGMAEKIQAFKGKIPIFGICGGYQMLGKTIY 339
Query: 111 SSHI 114
S +
Sbjct: 340 DSGV 343
>sp|Q8TKZ3|COBQ_METAC Probable cobyric acid synthase OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=cobQ
PE=3 SV=1
Length = 485
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 53 DDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKV--LGICFGHQVRAITVF 110
D+D G+ D +I G+ N ND+ + + K++ + + K+ GIC G+Q+ T+F
Sbjct: 282 DEDLGNPDAIMIPGTKNTI--NDLLDLRASGMDKKIQAFKGKIPIFGICGGYQMLGRTIF 339
Query: 111 SSHI 114
S +
Sbjct: 340 DSGV 343
>sp|O60060|CARA_SCHPO Carbamoyl-phosphate synthase arginine-specific small chain
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=arg5 PE=3 SV=1
Length = 415
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 30 VRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQL- 88
+R L G + VF ++P + +YDG +T + G+ + K + L++L
Sbjct: 238 LRSLVSRGASVTVFPF---DYPIQNVASNYDGIFLT----NGPGDPTHLTKTVNNLRELM 290
Query: 89 DSLRKKVLGICFGHQVRAITVFSSHI 114
++ ++GIC GHQ+ A++ + I
Sbjct: 291 NTYNGPIMGICMGHQLLALSTGAKTI 316
>sp|Q752N9|CARA_ASHGO Carbamoyl-phosphate synthase arginine-specific small chain
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=CPA1 PE=3 SV=1
Length = 399
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Query: 50 FPDDDDFGS----YDGYVITGSCNDA-HGNDVWICKLIALLKQLDSLRKKVLGICFGHQV 104
FP D D S +DG I+ D H + + L LL+ D + + GIC GHQ+
Sbjct: 213 FPYDYDVCSIAHHFDGVFISNGPGDPIHYRNSTVANLRRLLQDPDLQQVPIFGICMGHQL 272
Query: 105 RAITVFSSHI 114
A+ +S +
Sbjct: 273 LALAAGASTV 282
>sp|Q09794|PYR1_SCHPO Protein ura1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ura1 PE=1 SV=1
Length = 2244
Score = 32.3 bits (72), Expect = 0.88, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
Query: 51 PDDDDFG--SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRA 106
P D DF +YDG I+ D D+ + ++ + L+S V GICFGHQ+ A
Sbjct: 291 PWDYDFTKETYDGLFISNGPGDPSLMDLVVDRV---KRVLESKTVPVFGICFGHQIMA 345
>sp|Q970U8|CARA_SULTO Carbamoyl-phosphate synthase small chain OS=Sulfolobus tokodaii
(strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=carA
PE=3 SV=1
Length = 372
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV 109
+ GN + ++I K+L + +LGIC GHQV + +
Sbjct: 233 NGPGNPNLLQEVIENFKELTEYKIPILGICLGHQVATLAM 272
>sp|Q12UJ5|GUAAA_METBU GMP synthase [glutamine-hydrolyzing] subunit A OS=Methanococcoides
burtonii (strain DSM 6242) GN=guaAA PE=3 SV=1
Length = 189
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 88 LDSLRKKVLGICFGHQVRAITVFSSHINASKIAGTA 123
++S+ +LGIC GHQ+ A T F H A K+ G A
Sbjct: 68 VESIDIPILGICLGHQLIAQT-FGGHTGAGKLGGYA 102
>sp|O50235|CARA_ZYMMO Carbamoyl-phosphate synthase small chain OS=Zymomonas mobilis
subsp. mobilis (strain ATCC 31821 / ZM4 / CP4) GN=carA
PE=3 SV=2
Length = 374
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 82 IALLKQLDSLRKKVLGICFGHQVRAITV 109
+ +++QL ++ + GIC GHQ+ A+ V
Sbjct: 247 VPVIRQLLDIKMPIFGICLGHQLLALAV 274
>sp|B9KFL4|GUAA_CAMLR GMP synthase [glutamine-hydrolyzing] OS=Campylobacter lari (strain
RM2100 / D67 / ATCC BAA-1060) GN=guaA PE=3 SV=1
Length = 511
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 11/84 (13%)
Query: 25 YFGVFVRMLAEEGETWDV--FHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82
Y + R L E+G ++ F+V+ E + G +++G + ND + C
Sbjct: 15 YTQLIARRLREQGVYAEILPFNVSLDEIKAKEP----KGIILSGGPASVYANDAYFCD-- 68
Query: 83 ALLKQLDSLRKKVLGICFGHQVRA 106
K + L VLGIC+G Q+ A
Sbjct: 69 ---KGVFDLNIPVLGICYGMQLMA 89
>sp|Q8Q0P3|COBQ_METMA Probable cobyric acid synthase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=cobQ PE=3 SV=2
Length = 485
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 18/64 (28%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 53 DDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKV--LGICFGHQVRAITVF 110
+++ G+ D +I G+ N ND+ + + K++ + + KV GIC G+Q+ T+F
Sbjct: 282 NEELGNPDAIMIPGTKNTV--NDLLDLRASGMDKKIQAFKGKVPIFGICGGYQMLGRTIF 339
Query: 111 SSHI 114
S +
Sbjct: 340 DSGV 343
>sp|Q5AML6|CARA_CANAL Carbamoyl-phosphate synthase arginine-specific small chain
OS=Candida albicans (strain SC5314 / ATCC MYA-2876)
GN=CPA1 PE=3 SV=1
Length = 430
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 30 VRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLD 89
+R L E G + VF ++P D +DG I+ D + L ++
Sbjct: 232 LRCLVERGASLTVFPY---DYPIDKIANKFDGIFISNGPGDPTHCSTTVNNLKKIITNHQ 288
Query: 90 SLRKKVLGICFGHQVRAI 107
L + GIC GHQ+ A+
Sbjct: 289 DL--PIFGICLGHQLLAL 304
>sp|P81187|CFAB_BOVIN Complement factor B OS=Bos taurus GN=CFB PE=1 SV=2
Length = 761
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 35 EEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCN-DAHGNDVW 77
E GE W A D+ F YDGY + GS N GN W
Sbjct: 110 ENGEYWP--RAAYYNLSDEISFRCYDGYTLRGSANRTCQGNGRW 151
>sp|O28949|GUAAA_ARCFU GMP synthase [glutamine-hydrolyzing] subunit A OS=Archaeoglobus
fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM
9628 / NBRC 100126) GN=guaAA PE=3 SV=1
Length = 183
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 17 YVKKKYGGYFGVFVRMLAEEG-ETWDVFHVARGEFPDDDDFGSYDGYVITGSCN-DAHGN 74
YV YG Y + R L + G ET V + E D DG VI G + D GN
Sbjct: 4 YVIYNYGQYNHLIHRTLRDLGVETKLVENTTPVEQLKD-----VDGLVIGGGPSLDRTGN 58
Query: 75 DVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAG 121
C+L LK+LD ++GIC GHQ+ A VF + + G
Sbjct: 59 ----CEL--YLKELDV---PMIGICLGHQLMA-KVFGGEVGKGSMGG 95
>sp|Q6FQ30|CARA_CANGA Carbamoyl-phosphate synthase arginine-specific small chain
OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM
3761 / NBRC 0622 / NRRL Y-65) GN=CPA1 PE=3 SV=1
Length = 392
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 5/79 (6%)
Query: 30 VRMLAEEGETWDVF-HVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQL 88
+R L G +F H AR + D G +DG ++ + I L LL
Sbjct: 192 IRSLVARGANVTIFPHNARIQ----DVAGQFDGVFLSNGPGNPETCHETIENLKELLANE 247
Query: 89 DSLRKKVLGICFGHQVRAI 107
D + + GIC GHQ+ A+
Sbjct: 248 DLQQLPIFGICLGHQLLAL 266
>sp|B3CPU7|GUAA_WOLPP GMP synthase [glutamine-hydrolyzing] OS=Wolbachia pipientis subsp.
Culex pipiens (strain wPip) GN=guaA PE=3 SV=1
Length = 520
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 50 FPDDDDF---GSYDGYVITGSCNDAHGNDVWICKLI-ALLKQLDSLRKKVLGICFGHQV 104
FP + DF ++G++ +G + N + ++ ++K +++ +LGIC+G Q+
Sbjct: 31 FPSNIDFETVSKFNGFIFSGGPQSVNDNCSEVSEVAHKIIKLNETINTPILGICYGQQL 89
>sp|Q8XI46|GUAA_CLOPE GMP synthase [glutamine-hydrolyzing] OS=Clostridium perfringens
(strain 13 / Type A) GN=guaA PE=3 SV=1
Length = 509
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 61 GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRA 106
G + TG N +G + L K++ +L VLGIC+G Q+ A
Sbjct: 48 GIIFTGGPNSVYGENT-----PTLDKEIFNLNVPVLGICYGDQLMA 88
>sp|A9VLH5|HIS5_BACWK Imidazole glycerol phosphate synthase subunit HisH OS=Bacillus
weihenstephanensis (strain KBAB4) GN=hisH PE=3 SV=1
Length = 209
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 52 DDDDFGSYDGYVITGSCNDAHGNDVWICK-LIALLKQLDSLRKKVLGICFGHQV 104
D + DG ++ G V K L+ +LK++ SL K +LGIC G Q+
Sbjct: 31 DKKEILRSDGVILPGVGTFPKAMGVLEEKDLVCVLKEVGSLGKPLLGICLGMQL 84
>sp|Q6C9Y4|CARA_YARLI Carbamoyl-phosphate synthase arginine-specific small chain
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CPA1
PE=3 SV=1
Length = 448
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 30 VRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLD 89
+R L G + VF E+P +D +DG I+ D + L ++ +
Sbjct: 237 LRSLVSRGASITVFPY---EYPINDIAHHFDGIFISNGPGDPTHCQQTVLNLRDIMYEKP 293
Query: 90 SLRK-KVLGICFGHQVRAI 107
L + + GIC GHQ+ A+
Sbjct: 294 ELSELPIFGICLGHQLLAL 312
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.141 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,583,305
Number of Sequences: 539616
Number of extensions: 2130055
Number of successful extensions: 4347
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 4339
Number of HSP's gapped (non-prelim): 27
length of query: 126
length of database: 191,569,459
effective HSP length: 92
effective length of query: 34
effective length of database: 141,924,787
effective search space: 4825442758
effective search space used: 4825442758
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)