Query 033165
Match_columns 126
No_of_seqs 189 out of 1458
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 10:37:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033165.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033165hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05665 amidotransferase; Pro 100.0 2.7E-29 5.8E-34 187.9 14.9 115 1-118 1-117 (240)
2 KOG3179 Predicted glutamine sy 100.0 2.7E-29 5.8E-34 181.3 12.1 119 1-119 2-120 (245)
3 PRK09065 glutamine amidotransf 100.0 3.8E-28 8.1E-33 181.4 13.9 113 3-117 1-113 (237)
4 PRK06490 glutamine amidotransf 99.9 4.3E-25 9.2E-30 165.2 13.1 111 2-122 6-119 (239)
5 PRK07053 glutamine amidotransf 99.9 1.3E-23 2.7E-28 156.8 12.7 110 3-122 2-114 (234)
6 COG0518 GuaA GMP synthase - Gl 99.9 1.2E-22 2.5E-27 148.3 11.9 110 3-123 1-111 (198)
7 PRK07567 glutamine amidotransf 99.9 1.2E-22 2.6E-27 152.2 11.6 115 3-122 1-124 (242)
8 COG0512 PabA Anthranilate/para 99.9 1.2E-22 2.6E-27 146.2 8.8 103 3-122 1-104 (191)
9 PRK06895 putative anthranilate 99.9 1.2E-21 2.6E-26 141.7 10.8 96 4-117 2-97 (190)
10 PRK08250 glutamine amidotransf 99.9 2.2E-21 4.9E-26 144.7 12.5 109 4-122 1-115 (235)
11 cd01741 GATase1_1 Subgroup of 99.9 1.1E-20 2.5E-25 135.8 12.0 103 5-118 1-107 (188)
12 PRK08007 para-aminobenzoate sy 99.8 5.1E-21 1.1E-25 138.4 6.6 93 20-118 6-98 (187)
13 PRK06774 para-aminobenzoate sy 99.8 1.2E-20 2.5E-25 136.6 7.2 91 20-118 6-98 (191)
14 PRK07649 para-aminobenzoate/an 99.8 1.8E-20 3.9E-25 136.4 7.3 93 20-118 6-98 (195)
15 PF00117 GATase: Glutamine ami 99.8 5.2E-21 1.1E-25 137.7 3.2 93 20-117 4-97 (192)
16 PRK08857 para-aminobenzoate sy 99.8 4.8E-20 1E-24 133.7 7.5 93 20-118 6-98 (193)
17 PRK07765 para-aminobenzoate sy 99.8 1.4E-19 2.9E-24 133.5 9.6 101 4-118 1-102 (214)
18 PRK05637 anthranilate synthase 99.8 1.1E-19 2.3E-24 133.6 9.0 97 3-118 1-99 (208)
19 PRK05670 anthranilate synthase 99.8 1E-19 2.2E-24 131.5 8.6 97 6-118 2-98 (189)
20 TIGR00566 trpG_papA glutamine 99.8 7.3E-20 1.6E-24 132.4 7.7 93 20-118 6-98 (188)
21 CHL00101 trpG anthranilate syn 99.8 7.7E-20 1.7E-24 132.4 6.4 92 21-118 7-98 (190)
22 cd01743 GATase1_Anthranilate_S 99.8 2.6E-19 5.6E-24 128.6 8.6 92 20-117 5-96 (184)
23 PLN02335 anthranilate synthase 99.8 9.1E-19 2E-23 129.7 8.6 98 4-117 19-116 (222)
24 cd01742 GATase1_GMP_Synthase T 99.8 3.5E-18 7.6E-23 122.1 9.6 91 24-122 9-101 (181)
25 PRK13527 glutamine amidotransf 99.8 2.6E-18 5.6E-23 125.2 8.6 97 4-112 1-97 (200)
26 PRK09522 bifunctional glutamin 99.8 5.8E-18 1.3E-22 138.9 10.2 99 3-119 1-104 (531)
27 TIGR00888 guaA_Nterm GMP synth 99.7 8E-18 1.7E-22 121.3 9.4 93 6-117 1-95 (188)
28 PRK00758 GMP synthase subunit 99.7 6.6E-18 1.4E-22 121.4 8.6 90 6-117 2-92 (184)
29 PLN02889 oxo-acid-lyase/anthra 99.7 8.1E-18 1.8E-22 144.0 10.0 104 4-120 82-190 (918)
30 cd01744 GATase1_CPSase Small c 99.7 4.1E-17 9E-22 116.9 9.1 84 28-117 11-94 (178)
31 PLN02347 GMP synthetase 99.7 6.7E-17 1.5E-21 132.7 10.5 104 4-123 11-118 (536)
32 TIGR01823 PabB-fungal aminodeo 99.7 6.4E-17 1.4E-21 137.0 10.5 102 1-117 3-111 (742)
33 PRK05368 homoserine O-succinyl 99.7 4.2E-16 9.2E-21 120.0 13.4 112 3-121 35-166 (302)
34 PRK13525 glutamine amidotransf 99.7 8.2E-17 1.8E-21 116.6 8.3 91 3-111 1-91 (189)
35 TIGR01815 TrpE-clade3 anthrani 99.7 1.6E-16 3.4E-21 134.1 11.0 97 3-117 516-613 (717)
36 PRK13566 anthranilate synthase 99.7 2.2E-16 4.7E-21 133.3 10.6 97 3-117 526-623 (720)
37 cd01745 GATase1_2 Subgroup of 99.7 9.3E-17 2E-21 116.2 7.1 108 8-116 3-124 (189)
38 PRK00074 guaA GMP synthase; Re 99.7 1.7E-16 3.7E-21 129.8 9.3 102 1-122 1-106 (511)
39 CHL00197 carA carbamoyl-phosph 99.7 3.3E-16 7.1E-21 124.0 10.2 97 3-117 192-288 (382)
40 PRK14607 bifunctional glutamin 99.7 1.4E-16 3E-21 130.9 7.0 93 20-118 6-99 (534)
41 PRK13143 hisH imidazole glycer 99.7 6E-16 1.3E-20 112.8 8.5 95 4-116 1-107 (200)
42 cd01746 GATase1_CTP_Synthase T 99.6 1.4E-15 3E-20 113.7 9.7 103 5-115 2-107 (235)
43 PRK12564 carbamoyl phosphate s 99.6 9.4E-16 2E-20 120.7 9.1 96 4-117 178-273 (360)
44 TIGR03800 PLP_synth_Pdx2 pyrid 99.6 8.2E-16 1.8E-20 111.0 6.5 88 5-110 1-88 (184)
45 PRK12838 carbamoyl phosphate s 99.6 2.2E-15 4.7E-20 118.4 9.3 96 3-117 167-262 (354)
46 cd01748 GATase1_IGP_Synthase T 99.6 8.5E-16 1.8E-20 111.6 6.4 94 6-117 1-108 (198)
47 PRK13146 hisH imidazole glycer 99.6 1E-15 2.2E-20 112.4 6.6 98 3-116 1-113 (209)
48 TIGR01368 CPSaseIIsmall carbam 99.6 2.1E-15 4.6E-20 118.6 8.6 92 4-116 174-267 (358)
49 PLN02771 carbamoyl-phosphate s 99.6 3.1E-15 6.8E-20 119.1 8.6 94 4-117 241-335 (415)
50 PRK13141 hisH imidazole glycer 99.6 2.6E-15 5.6E-20 109.7 6.4 95 5-117 1-109 (205)
51 COG0505 CarA Carbamoylphosphat 99.6 7E-15 1.5E-19 114.2 8.8 94 3-116 179-274 (368)
52 PRK11366 puuD gamma-glutamyl-g 99.6 5.4E-15 1.2E-19 111.6 7.4 61 56-116 59-131 (254)
53 cd01749 GATase1_PB Glutamine A 99.6 5.1E-15 1.1E-19 106.6 5.9 74 31-111 15-88 (183)
54 PRK13181 hisH imidazole glycer 99.5 1.2E-14 2.6E-19 105.8 7.0 94 6-117 2-108 (199)
55 PRK13170 hisH imidazole glycer 99.5 2E-14 4.4E-19 104.6 8.1 88 4-110 1-88 (196)
56 PRK01175 phosphoribosylformylg 99.5 9.9E-14 2.1E-18 105.1 11.9 98 1-108 1-105 (261)
57 CHL00188 hisH imidazole glycer 99.5 4.4E-14 9.5E-19 104.0 8.7 91 3-111 1-93 (210)
58 TIGR01855 IMP_synth_hisH imida 99.5 3.6E-14 7.8E-19 103.2 7.4 93 6-116 1-107 (196)
59 COG0118 HisH Glutamine amidotr 99.5 8.9E-14 1.9E-18 101.0 8.2 86 3-107 1-89 (204)
60 PLN02832 glutamine amidotransf 99.5 6.8E-14 1.5E-18 105.2 6.0 89 3-109 1-89 (248)
61 KOG0026 Anthranilate synthase, 99.5 1.3E-13 2.9E-18 97.5 6.9 98 18-121 23-122 (223)
62 TIGR01737 FGAM_synth_I phospho 99.5 1.2E-12 2.5E-17 97.3 11.7 97 4-116 1-104 (227)
63 cd01747 GATase1_Glutamyl_Hydro 99.5 1.4E-13 3.1E-18 104.9 6.6 84 28-114 24-114 (273)
64 PRK05380 pyrG CTP synthetase; 99.4 4.8E-13 1E-17 109.3 8.4 103 4-114 289-394 (533)
65 PRK13152 hisH imidazole glycer 99.4 7.8E-13 1.7E-17 96.5 8.6 85 6-108 2-89 (201)
66 cd03131 GATase1_HTS Type 1 glu 99.4 1.9E-12 4E-17 92.9 10.0 109 6-121 1-129 (175)
67 cd01740 GATase1_FGAR_AT Type 1 99.4 1.4E-12 3E-17 97.5 9.6 100 6-116 1-108 (238)
68 KOG1622 GMP synthase [Nucleoti 99.4 2.7E-13 5.9E-18 108.0 5.9 93 4-116 17-112 (552)
69 COG0047 PurL Phosphoribosylfor 99.4 3.8E-12 8.2E-17 93.9 10.8 89 3-108 2-97 (231)
70 PRK03619 phosphoribosylformylg 99.4 7.2E-12 1.6E-16 92.7 11.6 98 4-116 1-105 (219)
71 PRK13526 glutamine amidotransf 99.4 6E-13 1.3E-17 95.7 5.5 88 1-108 1-88 (179)
72 PRK06186 hypothetical protein; 99.4 4E-12 8.6E-17 94.6 9.7 73 35-112 30-102 (229)
73 PLN02617 imidazole glycerol ph 99.4 5.2E-12 1.1E-16 104.0 10.3 89 3-109 6-96 (538)
74 PRK13142 hisH imidazole glycer 99.4 2.9E-12 6.4E-17 93.2 7.7 84 6-109 2-87 (192)
75 KOG1224 Para-aminobenzoate (PA 99.4 2.1E-12 4.5E-17 104.9 7.4 99 20-121 21-124 (767)
76 COG2071 Predicted glutamine am 99.4 2.6E-12 5.7E-17 95.5 7.3 111 1-115 1-130 (243)
77 PRK14004 hisH imidazole glycer 99.3 6.8E-12 1.5E-16 92.4 8.6 87 6-110 2-90 (210)
78 KOG0370 Multifunctional pyrimi 99.3 1.2E-11 2.7E-16 105.5 10.3 92 3-115 172-263 (1435)
79 TIGR00337 PyrG CTP synthase. C 99.3 6.7E-12 1.4E-16 102.6 7.7 100 4-115 290-395 (525)
80 cd01750 GATase1_CobQ Type 1 gl 99.3 9.5E-12 2.1E-16 90.4 7.5 75 29-111 15-91 (194)
81 PF07722 Peptidase_C26: Peptid 99.3 1.5E-12 3.3E-17 96.1 1.8 88 28-115 28-129 (217)
82 PLN02327 CTP synthase 99.2 6.4E-11 1.4E-15 97.3 9.4 103 4-114 298-413 (557)
83 cd03130 GATase1_CobB Type 1 gl 99.2 5.4E-11 1.2E-15 86.7 7.7 77 25-109 13-92 (198)
84 PF13507 GATase_5: CobB/CobQ-l 99.0 7.4E-10 1.6E-14 84.0 7.1 95 3-108 1-106 (259)
85 PRK00784 cobyric acid synthase 99.0 1.3E-09 2.8E-14 89.0 8.6 88 4-109 252-342 (488)
86 PRK11780 isoprenoid biosynthes 99.0 7E-09 1.5E-13 76.8 10.3 105 3-110 1-146 (217)
87 COG0504 PyrG CTP synthase (UTP 99.0 5.1E-09 1.1E-13 84.7 9.3 94 4-109 289-389 (533)
88 PRK06278 cobyrinic acid a,c-di 98.9 2.6E-09 5.6E-14 87.0 7.1 81 4-109 1-82 (476)
89 cd03146 GAT1_Peptidase_E Type 98.9 5E-09 1.1E-13 77.1 6.8 96 3-108 31-130 (212)
90 cd01653 GATase1 Type 1 glutami 98.9 2.5E-08 5.3E-13 63.0 9.0 77 28-105 16-92 (115)
91 PF04204 HTS: Homoserine O-suc 98.9 1.1E-08 2.3E-13 78.8 7.5 112 3-121 34-165 (298)
92 PRK01077 cobyrinic acid a,c-di 98.8 1.6E-08 3.5E-13 81.9 8.9 94 4-111 246-341 (451)
93 TIGR00379 cobB cobyrinic acid 98.8 1.8E-08 3.9E-13 81.6 8.0 92 4-109 245-338 (449)
94 TIGR01857 FGAM-synthase phosph 98.8 6.6E-08 1.4E-12 85.9 11.9 95 3-108 977-1090(1239)
95 TIGR01001 metA homoserine O-su 98.8 6.6E-08 1.4E-12 74.3 10.3 112 3-121 35-166 (300)
96 COG0311 PDX2 Predicted glutami 98.8 9.7E-09 2.1E-13 73.8 5.4 89 4-110 1-90 (194)
97 PLN03206 phosphoribosylformylg 98.8 7E-08 1.5E-12 86.2 11.7 96 3-108 1037-1142(1307)
98 TIGR01735 FGAM_synt phosphorib 98.8 8.1E-08 1.8E-12 86.0 11.6 96 3-110 1055-1162(1310)
99 PRK05297 phosphoribosylformylg 98.8 1.2E-07 2.6E-12 85.0 11.9 94 3-108 1035-1140(1290)
100 cd03169 GATase1_PfpI_1 Type 1 98.7 1.3E-07 2.8E-12 67.4 9.6 95 5-108 1-124 (180)
101 PF07685 GATase_3: CobB/CobQ-l 98.7 1.4E-08 2.9E-13 71.6 4.4 55 55-110 4-60 (158)
102 cd03128 GAT_1 Type 1 glutamine 98.7 9.3E-08 2E-12 57.8 7.0 77 28-105 16-92 (92)
103 TIGR00313 cobQ cobyric acid sy 98.7 4.4E-08 9.5E-13 79.9 7.2 54 55-109 281-336 (475)
104 cd03134 GATase1_PfpI_like A ty 98.7 2.8E-07 6E-12 64.6 9.8 95 5-108 1-110 (165)
105 cd03147 GATase1_Ydr533c_like T 98.7 9.9E-08 2.1E-12 71.3 7.6 66 56-122 92-161 (231)
106 TIGR01382 PfpI intracellular p 98.7 2.3E-07 5E-12 65.0 8.9 95 5-108 1-108 (166)
107 PRK13896 cobyrinic acid a,c-di 98.7 3.7E-08 8E-13 79.5 5.5 91 4-110 234-326 (433)
108 COG0693 ThiJ Putative intracel 98.6 3.5E-07 7.6E-12 65.5 9.6 99 3-109 2-116 (188)
109 cd03133 GATase1_ES1 Type 1 glu 98.6 2.1E-07 4.5E-12 68.8 8.3 81 30-110 23-143 (213)
110 KOG2387 CTP synthase (UTP-ammo 98.6 2.6E-07 5.5E-12 74.3 9.0 49 56-109 361-409 (585)
111 PF01174 SNO: SNO glutamine am 98.6 2.1E-08 4.5E-13 72.4 2.3 74 31-111 13-87 (188)
112 cd03132 GATase1_catalase Type 98.6 7.4E-07 1.6E-11 61.1 9.6 98 3-108 1-111 (142)
113 PRK04155 chaperone protein Hch 98.6 4.9E-07 1.1E-11 69.6 9.5 52 56-108 145-196 (287)
114 TIGR01739 tegu_FGAM_synt herpe 98.6 8.3E-07 1.8E-11 79.3 11.3 95 3-111 929-1036(1202)
115 PHA03366 FGAM-synthase; Provis 98.5 2.4E-06 5.2E-11 76.8 12.0 93 3-107 1028-1132(1304)
116 PRK11574 oxidative-stress-resi 98.4 5.8E-06 1.3E-10 59.6 10.8 98 3-108 2-115 (196)
117 COG1492 CobQ Cobyric acid synt 98.4 1.6E-06 3.6E-11 70.5 8.5 90 4-111 252-344 (486)
118 cd03144 GATase1_ScBLP_like Typ 98.3 1E-06 2.2E-11 59.2 4.0 47 57-105 43-90 (114)
119 PRK05282 (alpha)-aspartyl dipe 98.3 1.9E-06 4.1E-11 64.5 5.9 100 3-110 31-131 (233)
120 KOG0623 Glutamine amidotransfe 98.3 6.5E-06 1.4E-10 64.7 8.8 85 6-107 4-89 (541)
121 cd03140 GATase1_PfpI_3 Type 1 98.3 8.3E-06 1.8E-10 57.7 8.6 49 57-108 59-107 (170)
122 cd03137 GATase1_AraC_1 AraC tr 98.2 2.3E-05 4.9E-10 55.9 10.5 52 55-108 61-112 (187)
123 cd03135 GATase1_DJ-1 Type 1 gl 98.2 9.8E-06 2.1E-10 56.3 8.2 79 29-108 17-109 (163)
124 TIGR01383 not_thiJ DJ-1 family 98.1 2.5E-05 5.4E-10 55.2 9.0 96 5-108 1-112 (179)
125 cd03148 GATase1_EcHsp31_like T 98.1 5.8E-06 1.3E-10 61.8 5.7 51 57-108 95-145 (232)
126 PF01965 DJ-1_PfpI: DJ-1/PfpI 98.1 9E-07 1.9E-11 61.3 0.9 52 56-108 35-87 (147)
127 COG3442 Predicted glutamine am 98.1 4.5E-06 9.7E-11 61.8 4.4 98 1-109 1-104 (250)
128 PRK11249 katE hydroperoxidase 98.1 2.4E-05 5.2E-10 66.9 8.7 98 3-108 597-707 (752)
129 COG1897 MetA Homoserine trans- 98.0 4.8E-05 1E-09 57.6 8.9 112 3-121 35-166 (307)
130 KOG3210 Imidazoleglycerol-phos 98.0 1.3E-05 2.9E-10 57.3 5.2 70 37-111 40-110 (226)
131 cd03138 GATase1_AraC_2 AraC tr 98.0 2.1E-05 4.5E-10 56.5 5.9 54 55-108 66-120 (195)
132 cd03141 GATase1_Hsp31_like Typ 98.0 1.2E-05 2.6E-10 59.5 4.5 52 56-108 88-139 (221)
133 PRK09393 ftrA transcriptional 97.9 0.00028 6.2E-09 54.5 12.1 101 2-108 8-122 (322)
134 cd03139 GATase1_PfpI_2 Type 1 97.9 7.6E-05 1.6E-09 52.8 7.7 51 56-108 60-110 (183)
135 cd03129 GAT1_Peptidase_E_like 97.8 6.5E-05 1.4E-09 54.9 6.5 98 3-108 29-130 (210)
136 cd03136 GATase1_AraC_ArgR_like 97.6 0.00021 4.5E-09 50.9 6.4 51 55-108 61-111 (185)
137 COG1797 CobB Cobyrinic acid a, 97.6 9.3E-05 2E-09 59.7 4.8 93 4-109 246-340 (451)
138 PF13278 DUF4066: Putative ami 97.6 0.0001 2.2E-09 51.6 4.0 52 55-108 58-109 (166)
139 KOG2764 Putative transcription 97.4 0.00065 1.4E-08 50.7 6.6 96 1-105 3-113 (247)
140 COG3340 PepE Peptidase E [Amin 97.2 0.00077 1.7E-08 49.9 4.8 96 4-105 33-131 (224)
141 KOG1907 Phosphoribosylformylgl 97.1 0.0022 4.8E-08 56.0 7.5 95 3-107 1058-1162(1320)
142 PF09825 BPL_N: Biotin-protein 97.0 0.0038 8.3E-08 49.7 7.8 51 57-108 48-98 (367)
143 TIGR02069 cyanophycinase cyano 96.8 0.0047 1E-07 46.7 6.7 98 4-109 29-133 (250)
144 cd03145 GAT1_cyanophycinase Ty 96.6 0.0042 9E-08 45.8 5.1 98 3-108 29-133 (217)
145 COG3155 ElbB Uncharacterized p 96.6 0.018 3.9E-07 41.2 7.8 60 55-114 82-150 (217)
146 PRK03372 ppnK inorganic polyph 96.5 0.027 5.8E-07 43.9 8.9 87 1-102 2-106 (306)
147 PF03575 Peptidase_S51: Peptid 96.4 0.0011 2.3E-08 46.3 0.4 81 25-107 1-84 (154)
148 PRK02645 ppnK inorganic polyph 96.4 0.061 1.3E-06 41.8 10.2 85 1-100 1-89 (305)
149 KOG1559 Gamma-glutamyl hydrola 96.3 0.0027 5.8E-08 48.1 2.1 101 4-110 53-165 (340)
150 COG4635 HemG Flavodoxin [Energ 95.6 0.15 3.2E-06 36.4 8.4 87 4-102 1-89 (175)
151 PRK11104 hemG protoporphyrinog 95.6 0.22 4.7E-06 35.6 9.4 85 4-101 1-87 (177)
152 PRK03378 ppnK inorganic polyph 95.5 0.18 3.8E-06 39.1 9.3 85 3-102 5-97 (292)
153 PRK02155 ppnK NAD(+)/NADH kina 95.1 0.22 4.8E-06 38.5 8.7 86 2-102 4-97 (291)
154 PRK02649 ppnK inorganic polyph 95.0 0.27 5.9E-06 38.3 9.0 84 3-101 1-101 (305)
155 COG4090 Uncharacterized protei 95.0 0.073 1.6E-06 36.7 5.1 44 54-100 81-124 (154)
156 PRK06756 flavodoxin; Provision 94.9 0.38 8.3E-06 32.9 8.7 57 3-66 1-57 (148)
157 PRK01231 ppnK inorganic polyph 94.9 0.28 6E-06 38.0 8.7 87 1-102 1-96 (295)
158 PRK01911 ppnK inorganic polyph 94.8 0.3 6.5E-06 37.8 8.7 84 4-102 1-98 (292)
159 COG4977 Transcriptional regula 94.7 0.13 2.8E-06 40.5 6.6 51 56-108 74-124 (328)
160 PRK03708 ppnK inorganic polyph 94.7 0.38 8.2E-06 36.9 9.0 83 4-102 1-90 (277)
161 PRK14077 pnk inorganic polypho 94.5 0.32 7E-06 37.6 8.2 84 3-102 10-98 (287)
162 PRK04539 ppnK inorganic polyph 94.4 0.57 1.2E-05 36.4 9.5 85 3-102 5-102 (296)
163 TIGR02667 moaB_proteo molybden 94.1 0.2 4.4E-06 35.4 6.0 65 3-70 4-75 (163)
164 PF06283 ThuA: Trehalose utili 94.0 0.14 3.1E-06 37.3 5.1 89 5-101 1-90 (217)
165 PF00885 DMRL_synthase: 6,7-di 93.8 0.38 8.2E-06 33.5 6.7 103 1-108 1-119 (144)
166 PRK01215 competence damage-ind 93.7 0.16 3.4E-06 38.8 5.0 72 1-73 1-77 (264)
167 PRK09271 flavodoxin; Provision 93.5 1.7 3.8E-05 30.2 11.1 59 4-67 1-60 (160)
168 COG4285 Uncharacterized conser 93.3 0.76 1.7E-05 34.4 7.9 42 57-103 48-93 (253)
169 PRK06703 flavodoxin; Provision 93.0 1.2 2.6E-05 30.5 8.2 56 3-66 1-56 (151)
170 PLN02929 NADH kinase 93.0 0.59 1.3E-05 36.4 7.3 62 25-101 35-96 (301)
171 cd00886 MogA_MoaB MogA_MoaB fa 92.8 0.58 1.3E-05 32.5 6.4 66 4-70 1-73 (152)
172 PF03698 UPF0180: Uncharacteri 92.5 0.29 6.3E-06 30.8 4.1 37 28-71 12-48 (80)
173 PRK14076 pnk inorganic polypho 92.4 1.3 2.8E-05 37.3 9.1 85 3-102 290-382 (569)
174 PRK14569 D-alanyl-alanine synt 91.5 1.5 3.2E-05 33.6 7.9 62 1-64 1-62 (296)
175 PRK03767 NAD(P)H:quinone oxido 91.5 1.5 3.3E-05 31.6 7.6 58 3-66 1-77 (200)
176 PRK05569 flavodoxin; Provision 91.5 2.3 4.9E-05 28.6 8.1 57 3-67 1-57 (141)
177 cd03142 GATase1_ThuA Type 1 gl 91.1 2.2 4.8E-05 31.6 8.2 83 16-102 14-98 (215)
178 PRK07308 flavodoxin; Validated 91.0 1.7 3.6E-05 29.6 7.1 55 5-68 3-57 (146)
179 TIGR00853 pts-lac PTS system, 90.9 2.8 6.1E-05 26.9 7.6 80 1-98 1-81 (95)
180 PRK09417 mogA molybdenum cofac 90.7 0.98 2.1E-05 32.9 5.9 68 1-70 1-78 (193)
181 PF09897 DUF2124: Uncharacteri 90.6 0.19 4.1E-06 35.2 1.9 42 55-100 78-119 (147)
182 PRK09267 flavodoxin FldA; Vali 90.5 2.4 5.2E-05 29.5 7.7 55 3-69 1-57 (169)
183 PF03358 FMN_red: NADPH-depend 90.4 0.16 3.4E-06 34.7 1.5 94 4-101 1-115 (152)
184 PRK03094 hypothetical protein; 90.0 0.98 2.1E-05 28.4 4.6 36 29-71 13-48 (80)
185 PRK03673 hypothetical protein; 90.0 0.92 2E-05 36.7 5.7 71 3-74 1-76 (396)
186 cd05014 SIS_Kpsf KpsF-like pro 89.8 4.1 8.8E-05 26.7 8.9 88 5-107 2-90 (128)
187 PRK06455 riboflavin synthase; 89.8 2.6 5.6E-05 29.8 7.1 88 3-98 1-97 (155)
188 PRK01372 ddl D-alanine--D-alan 89.8 1.7 3.7E-05 33.0 6.8 62 1-65 2-63 (304)
189 TIGR00177 molyb_syn molybdenum 89.7 0.47 1E-05 32.6 3.4 67 4-70 1-78 (144)
190 PRK04885 ppnK inorganic polyph 89.5 1.6 3.4E-05 33.4 6.4 69 4-102 1-71 (265)
191 PRK11914 diacylglycerol kinase 89.5 1.4 3.1E-05 33.8 6.3 65 1-69 6-75 (306)
192 COG5426 Uncharacterized membra 88.8 0.89 1.9E-05 33.6 4.4 77 27-103 35-123 (254)
193 cd00885 cinA Competence-damage 88.3 2.1 4.5E-05 30.4 6.0 69 5-74 1-74 (170)
194 PRK09739 hypothetical protein; 88.0 1.5 3.3E-05 31.5 5.3 40 1-47 1-44 (199)
195 PRK01185 ppnK inorganic polyph 87.8 3.2 6.9E-05 31.8 7.1 78 4-101 1-82 (271)
196 PRK05568 flavodoxin; Provision 87.6 6.5 0.00014 26.3 8.9 57 3-67 1-57 (142)
197 PRK14075 pnk inorganic polypho 87.5 5.5 0.00012 30.1 8.2 72 4-102 1-72 (256)
198 TIGR01754 flav_RNR ribonucleot 87.0 7.3 0.00016 26.3 8.9 58 4-67 1-59 (140)
199 PRK00561 ppnK inorganic polyph 86.8 3.4 7.4E-05 31.5 6.7 36 57-102 32-67 (259)
200 PRK13054 lipid kinase; Reviewe 86.8 3.3 7.1E-05 31.7 6.7 63 1-69 1-67 (300)
201 PRK00061 ribH 6,7-dimethyl-8-r 86.6 2.4 5.2E-05 29.9 5.4 91 2-96 11-112 (154)
202 TIGR00200 cinA_nterm competenc 86.2 2.6 5.7E-05 34.2 6.2 70 4-74 1-75 (413)
203 PRK12419 riboflavin synthase s 85.2 5.5 0.00012 28.2 6.7 91 2-96 9-110 (158)
204 PLN02935 Bifunctional NADH kin 84.9 12 0.00025 31.5 9.3 86 2-102 193-296 (508)
205 PF09822 ABC_transp_aux: ABC-t 84.9 6.9 0.00015 29.4 7.6 82 3-96 146-229 (271)
206 PRK03501 ppnK inorganic polyph 84.8 9.7 0.00021 29.1 8.3 71 3-101 2-74 (264)
207 PRK14690 molybdopterin biosynt 84.7 2.4 5.1E-05 34.5 5.2 67 3-69 193-270 (419)
208 cd00758 MoCF_BD MoCF_BD: molyb 84.7 1.5 3.3E-05 29.6 3.6 65 5-70 1-70 (133)
209 TIGR01755 flav_wrbA NAD(P)H:qu 84.7 4.8 0.0001 29.0 6.4 59 4-67 1-77 (197)
210 PRK03670 competence damage-ind 84.6 2.6 5.7E-05 31.9 5.2 70 4-74 1-76 (252)
211 PRK00549 competence damage-ind 84.2 3.8 8.2E-05 33.2 6.2 70 4-74 1-75 (414)
212 PRK13055 putative lipid kinase 83.6 8 0.00017 30.2 7.7 64 3-70 2-71 (334)
213 cd03522 MoeA_like MoeA_like. T 83.5 2.3 5.1E-05 33.3 4.6 66 3-69 159-230 (312)
214 COG1058 CinA Predicted nucleot 82.4 1.7 3.7E-05 33.1 3.3 72 3-75 1-77 (255)
215 smart00852 MoCF_biosynth Proba 82.0 2.1 4.6E-05 28.8 3.5 48 22-69 16-68 (135)
216 PRK10680 molybdopterin biosynt 81.6 2.2 4.8E-05 34.6 3.9 67 3-69 177-254 (411)
217 COG0054 RibH Riboflavin syntha 81.1 17 0.00036 25.7 8.2 103 2-108 11-128 (152)
218 PRK10499 PTS system N,N'-diace 81.0 12 0.00025 24.5 6.6 57 1-65 1-57 (106)
219 PF09075 STb_secrete: Heat-sta 80.5 0.33 7.2E-06 26.5 -0.8 17 94-110 31-47 (48)
220 PLN02404 6,7-dimethyl-8-ribity 80.4 11 0.00025 26.1 6.7 104 2-109 6-124 (141)
221 PRK02231 ppnK inorganic polyph 80.1 7.5 0.00016 29.8 6.2 63 29-101 5-75 (272)
222 TIGR00147 lipid kinase, YegS/R 80.1 10 0.00022 28.7 6.9 95 3-110 1-102 (293)
223 COG0303 MoeA Molybdopterin bio 80.0 3 6.6E-05 33.8 4.2 67 3-69 176-253 (404)
224 PRK04761 ppnK inorganic polyph 79.9 3.3 7.1E-05 31.4 4.1 37 56-102 23-59 (246)
225 PLN02727 NAD kinase 79.6 12 0.00027 33.6 8.0 84 3-102 678-777 (986)
226 PRK13555 azoreductase; Provisi 79.1 10 0.00023 27.7 6.5 44 3-51 1-50 (208)
227 PRK14571 D-alanyl-alanine synt 78.6 9.7 0.00021 29.0 6.5 60 4-65 1-60 (299)
228 COG0061 nadF NAD kinase [Coenz 78.3 25 0.00055 26.9 8.6 36 57-102 54-89 (281)
229 cd06316 PBP1_ABC_sugar_binding 76.7 14 0.0003 27.4 6.8 81 5-98 1-87 (294)
230 PRK00170 azoreductase; Reviewe 76.6 11 0.00024 26.7 6.0 43 3-51 1-49 (201)
231 PRK09590 celB cellobiose phosp 76.3 7.1 0.00015 25.6 4.5 80 3-98 1-81 (104)
232 COG0771 MurD UDP-N-acetylmuram 76.1 28 0.00061 28.7 8.7 31 3-44 7-37 (448)
233 cd01451 vWA_Magnesium_chelatas 75.9 9.4 0.0002 26.7 5.4 41 82-122 122-170 (178)
234 PRK06975 bifunctional uroporph 75.3 18 0.00038 31.2 7.7 94 1-113 1-102 (656)
235 COG1182 AcpD Acyl carrier prot 75.1 17 0.00036 26.9 6.5 87 3-97 1-94 (202)
236 KOG4180 Predicted kinase [Gene 75.1 9 0.0002 30.5 5.4 62 23-98 74-135 (395)
237 cd06310 PBP1_ABC_sugar_binding 75.0 17 0.00037 26.4 6.8 59 5-67 1-66 (273)
238 TIGR00114 lumazine-synth 6,7-d 74.6 17 0.00037 25.1 6.2 101 4-108 1-116 (138)
239 TIGR01753 flav_short flavodoxi 74.5 19 0.00042 23.6 6.4 39 27-68 17-55 (140)
240 PF09314 DUF1972: Domain of un 74.3 24 0.00051 25.6 7.1 40 3-46 1-43 (185)
241 cd06300 PBP1_ABC_sugar_binding 74.0 11 0.00024 27.4 5.6 80 5-98 1-91 (272)
242 COG1031 Uncharacterized Fe-S o 74.0 11 0.00024 31.4 5.8 92 4-97 1-103 (560)
243 PRK14497 putative molybdopteri 73.3 2.8 6.1E-05 35.3 2.4 67 3-69 179-256 (546)
244 cd05565 PTS_IIB_lactose PTS_II 73.1 12 0.00027 24.2 4.9 37 27-65 18-54 (99)
245 PF00994 MoCF_biosynth: Probab 73.1 0.97 2.1E-05 30.8 -0.3 51 23-73 16-71 (144)
246 PRK13556 azoreductase; Provisi 73.1 11 0.00024 27.2 5.3 44 3-51 1-50 (208)
247 PF12724 Flavodoxin_5: Flavodo 72.9 7.7 0.00017 26.3 4.2 67 25-99 14-82 (143)
248 PRK06242 flavodoxin; Provision 72.8 26 0.00056 23.5 7.3 52 4-67 1-52 (150)
249 PF08532 Glyco_hydro_42M: Beta 71.9 20 0.00043 25.9 6.3 52 31-96 37-88 (207)
250 cd06320 PBP1_allose_binding Pe 71.6 36 0.00078 24.7 7.9 81 5-98 1-88 (275)
251 PRK10653 D-ribose transporter 71.3 24 0.00052 26.2 6.9 61 1-67 24-91 (295)
252 cd00887 MoeA MoeA family. Memb 71.2 4.6 9.9E-05 32.4 3.1 67 3-69 168-245 (394)
253 KOG3923 D-aspartate oxidase [A 71.1 36 0.00077 27.0 7.8 89 1-100 1-96 (342)
254 cd06318 PBP1_ABC_sugar_binding 70.2 19 0.0004 26.3 6.0 58 5-67 1-64 (282)
255 PRK05928 hemD uroporphyrinogen 70.1 6.9 0.00015 28.3 3.7 92 3-113 1-102 (249)
256 PRK10310 PTS system galactitol 69.7 22 0.00048 22.6 5.5 36 28-65 22-57 (94)
257 PF02525 Flavodoxin_2: Flavodo 68.8 10 0.00022 27.0 4.2 39 4-48 1-44 (199)
258 COG0391 Uncharacterized conser 68.7 8.7 0.00019 30.3 4.1 43 55-100 186-229 (323)
259 COG4242 CphB Cyanophycinase an 68.5 15 0.00032 28.3 5.1 97 5-108 54-156 (293)
260 PRK14491 putative bifunctional 67.9 10 0.00022 32.3 4.6 67 3-69 367-444 (597)
261 cd01544 PBP1_GalR Ligand-bindi 67.8 25 0.00053 25.7 6.2 59 5-66 1-60 (270)
262 TIGR01752 flav_long flavodoxin 67.5 39 0.00084 23.5 7.3 28 39-69 28-55 (167)
263 cd01822 Lysophospholipase_L1_l 67.3 35 0.00076 23.1 6.6 76 23-98 20-107 (177)
264 PLN02958 diacylglycerol kinase 67.0 30 0.00066 28.6 7.1 65 3-70 111-180 (481)
265 cd03143 A4_beta-galactosidase_ 66.9 37 0.0008 23.0 6.9 55 29-97 31-85 (154)
266 cd06305 PBP1_methylthioribose_ 66.7 25 0.00055 25.4 6.1 79 5-98 1-86 (273)
267 COG4126 Hydantoin racemase [Am 66.3 20 0.00043 26.9 5.3 46 57-114 68-113 (230)
268 cd06302 PBP1_LsrB_Quorum_Sensi 65.7 29 0.00063 25.9 6.4 59 5-67 1-65 (298)
269 COG0521 MoaB Molybdopterin bio 65.5 18 0.00039 25.9 4.8 66 4-71 8-80 (169)
270 cd06301 PBP1_rhizopine_binding 65.5 26 0.00057 25.3 6.0 78 5-97 1-86 (272)
271 TIGR00393 kpsF KpsF/GutQ famil 65.3 53 0.0012 24.2 8.4 66 29-101 18-83 (268)
272 PLN02493 probable peroxisomal 64.7 29 0.00062 27.9 6.4 58 57-114 244-305 (367)
273 PRK03604 moaC bifunctional mol 64.7 20 0.00042 28.2 5.3 66 4-70 156-227 (312)
274 cd06319 PBP1_ABC_sugar_binding 64.5 31 0.00067 25.0 6.2 59 5-67 1-64 (277)
275 cd06309 PBP1_YtfQ_like Peripla 64.3 27 0.00059 25.4 5.9 43 25-67 17-64 (273)
276 PRK05752 uroporphyrinogen-III 63.7 9.5 0.00021 28.4 3.3 55 1-66 1-63 (255)
277 cd01537 PBP1_Repressors_Sugar_ 62.9 33 0.00071 24.2 6.0 60 5-68 1-65 (264)
278 cd05710 SIS_1 A subgroup of th 62.8 40 0.00087 22.0 7.6 21 80-100 62-82 (120)
279 cd06312 PBP1_ABC_sugar_binding 62.7 26 0.00056 25.5 5.5 81 5-99 1-89 (271)
280 cd01425 RPS2 Ribosomal protein 62.2 43 0.00094 24.1 6.5 32 57-99 126-157 (193)
281 TIGR02990 ectoine_eutA ectoine 61.9 65 0.0014 24.1 8.6 78 3-98 120-212 (239)
282 PF13407 Peripla_BP_4: Peripla 61.6 32 0.00069 24.8 5.8 79 6-98 1-86 (257)
283 cd01538 PBP1_ABC_xylose_bindin 61.5 38 0.00083 25.0 6.3 79 5-98 1-86 (288)
284 PRK14498 putative molybdopteri 60.7 8.9 0.00019 32.6 3.0 67 3-69 186-263 (633)
285 COG1597 LCB5 Sphingosine kinas 59.9 45 0.00098 25.8 6.6 97 3-112 2-104 (301)
286 cd06308 PBP1_sensor_kinase_lik 58.7 41 0.0009 24.4 6.0 81 5-98 1-87 (270)
287 PLN02979 glycolate oxidase 58.0 44 0.00096 26.9 6.3 58 57-114 243-304 (366)
288 cd05008 SIS_GlmS_GlmD_1 SIS (S 57.7 48 0.0011 21.3 8.2 65 29-101 17-82 (126)
289 TIGR01012 Sa_S2_E_A ribosomal 57.6 73 0.0016 23.3 7.2 34 56-100 106-139 (196)
290 cd06315 PBP1_ABC_sugar_binding 57.4 42 0.00092 24.7 5.9 60 4-67 1-65 (280)
291 PRK01355 azoreductase; Reviewe 57.3 48 0.001 23.7 6.0 43 3-50 1-49 (199)
292 PRK10569 NAD(P)H-dependent FMN 57.2 70 0.0015 23.0 7.0 89 4-100 1-107 (191)
293 PRK11543 gutQ D-arabinose 5-ph 57.0 86 0.0019 23.9 8.3 90 4-109 43-134 (321)
294 TIGR03436 acidobact_VWFA VWFA- 56.8 30 0.00066 26.1 5.1 50 61-115 168-237 (296)
295 PRK10355 xylF D-xylose transpo 56.7 53 0.0011 25.3 6.5 82 3-98 25-112 (330)
296 PRK01966 ddl D-alanyl-alanine 56.5 33 0.00072 26.6 5.4 45 1-47 1-45 (333)
297 PRK02261 methylaspartate mutas 55.6 40 0.00086 23.0 5.1 76 1-88 1-81 (137)
298 PRK04690 murD UDP-N-acetylmura 55.6 86 0.0019 25.7 7.8 32 3-45 8-39 (468)
299 TIGR03521 GldG gliding-associa 55.5 1.3E+02 0.0027 25.4 9.0 82 3-97 183-267 (552)
300 PRK12359 flavodoxin FldB; Prov 55.1 74 0.0016 22.6 7.9 52 4-67 1-54 (172)
301 PF01380 SIS: SIS domain SIS d 54.6 32 0.0007 22.1 4.4 90 3-107 5-96 (131)
302 PRK15408 autoinducer 2-binding 53.7 69 0.0015 24.9 6.8 82 3-97 23-110 (336)
303 PLN02699 Bifunctional molybdop 53.7 15 0.00033 31.7 3.3 67 3-69 181-260 (659)
304 KOG2707 Predicted metalloprote 53.7 27 0.00058 28.2 4.4 62 56-125 101-162 (405)
305 cd06322 PBP1_ABC_sugar_binding 53.4 65 0.0014 23.2 6.3 41 27-67 19-64 (267)
306 cd06267 PBP1_LacI_sugar_bindin 52.9 69 0.0015 22.6 6.3 77 5-98 1-84 (264)
307 cd01540 PBP1_arabinose_binding 52.9 44 0.00096 24.4 5.4 57 5-67 1-63 (289)
308 cd01536 PBP1_ABC_sugar_binding 52.6 60 0.0013 23.0 6.0 57 5-67 1-64 (267)
309 cd01539 PBP1_GGBP Periplasmic 52.0 59 0.0013 24.4 6.0 79 5-98 1-88 (303)
310 cd05564 PTS_IIB_chitobiose_lic 51.9 59 0.0013 20.6 6.7 38 26-65 16-53 (96)
311 COG1587 HemD Uroporphyrinogen- 51.7 52 0.0011 24.4 5.6 53 4-67 124-184 (248)
312 cd06292 PBP1_LacI_like_10 Liga 51.3 90 0.002 22.5 7.5 82 6-98 2-89 (273)
313 PF01513 NAD_kinase: ATP-NAD k 51.1 17 0.00038 27.7 3.0 36 57-102 75-110 (285)
314 PF10740 DUF2529: Protein of u 51.1 27 0.00059 25.1 3.7 38 55-99 78-115 (172)
315 PF00781 DAGK_cat: Diacylglyce 51.1 55 0.0012 21.5 5.2 56 27-92 18-78 (130)
316 cd06298 PBP1_CcpA_like Ligand- 50.8 83 0.0018 22.5 6.5 56 6-67 2-64 (268)
317 PLN02699 Bifunctional molybdop 50.6 52 0.0011 28.5 6.0 68 1-69 456-535 (659)
318 PRK04930 glutathione-regulated 50.4 79 0.0017 22.8 6.1 56 3-65 5-68 (184)
319 cd05013 SIS_RpiR RpiR-like pro 49.9 67 0.0014 20.6 6.4 83 3-100 13-95 (139)
320 PRK10438 C-N hydrolase family 49.6 24 0.00052 26.3 3.5 21 1-21 1-21 (256)
321 cd01574 PBP1_LacI Ligand-bindi 49.5 84 0.0018 22.5 6.3 58 6-67 2-65 (264)
322 TIGR02336 1,3-beta-galactosyl- 49.5 58 0.0013 28.5 6.0 106 5-114 440-566 (719)
323 KOG1467 Translation initiation 49.4 50 0.0011 27.8 5.4 87 3-104 385-473 (556)
324 KOG1838 Alpha/beta hydrolase [ 48.7 1.5E+02 0.0033 24.3 9.1 101 5-125 126-232 (409)
325 COG0420 SbcD DNA repair exonuc 47.8 50 0.0011 26.1 5.2 41 58-98 40-81 (390)
326 PRK13337 putative lipid kinase 47.6 1.2E+02 0.0027 23.0 8.4 64 3-70 1-69 (304)
327 cd01575 PBP1_GntR Ligand-bindi 47.6 1E+02 0.0022 22.0 7.9 56 6-67 2-64 (268)
328 PRK09004 FMN-binding protein M 47.4 89 0.0019 21.3 8.7 55 3-67 1-55 (146)
329 TIGR01819 F420_cofD LPPG:FO 2- 47.4 13 0.00027 29.1 1.7 40 56-100 180-220 (297)
330 PRK00861 putative lipid kinase 47.4 90 0.0019 23.7 6.4 61 3-68 2-67 (300)
331 PF08937 DUF1863: MTH538 TIR-l 47.0 19 0.00041 24.0 2.3 41 57-102 69-109 (130)
332 cd06321 PBP1_ABC_sugar_binding 46.8 66 0.0014 23.2 5.4 33 57-98 56-88 (271)
333 cd06274 PBP1_FruR Ligand bindi 46.8 68 0.0015 23.1 5.5 57 6-67 2-64 (264)
334 PRK04342 DNA topoisomerase VI 46.5 85 0.0019 25.1 6.3 50 57-113 212-266 (367)
335 cd06295 PBP1_CelR Ligand bindi 45.8 55 0.0012 23.7 4.9 58 29-97 32-92 (275)
336 cd06299 PBP1_LacI_like_13 Liga 45.6 73 0.0016 22.8 5.5 39 27-67 19-64 (265)
337 PRK05752 uroporphyrinogen-III 45.0 92 0.002 23.0 6.0 51 4-65 131-189 (255)
338 cd06273 PBP1_GntR_like_1 This 44.9 1.1E+02 0.0024 21.9 6.3 59 27-98 19-84 (268)
339 cd06282 PBP1_GntR_like_2 Ligan 43.7 1.1E+02 0.0024 21.7 6.2 61 28-98 20-85 (266)
340 PRK11557 putative DNA-binding 43.7 1E+02 0.0022 23.0 6.1 81 4-101 129-211 (278)
341 cd00223 TOPRIM_TopoIIB_SPO TOP 43.7 1.1E+02 0.0023 21.2 5.8 48 58-112 23-75 (160)
342 cd04795 SIS SIS domain. SIS (S 43.6 68 0.0015 18.9 4.7 64 28-99 15-81 (87)
343 PRK14568 vanB D-alanine--D-lac 43.6 83 0.0018 24.5 5.8 45 1-47 1-45 (343)
344 COG1440 CelA Phosphotransferas 43.6 93 0.002 20.4 5.1 55 3-65 1-55 (102)
345 PRK11197 lldD L-lactate dehydr 43.5 84 0.0018 25.4 5.8 58 57-114 265-326 (381)
346 PF08901 DUF1847: Protein of u 42.9 1.2E+02 0.0026 21.5 5.8 95 1-109 53-149 (157)
347 cd07186 CofD_like LPPG:FO 2-ph 42.6 20 0.00043 28.1 2.1 42 56-100 181-223 (303)
348 cd03332 LMO_FMN L-Lactate 2-mo 42.6 90 0.002 25.2 5.9 58 57-114 273-334 (383)
349 cd06317 PBP1_ABC_sugar_binding 42.5 1E+02 0.0022 22.1 5.9 61 28-98 21-87 (275)
350 PRK10892 D-arabinose 5-phospha 42.4 1.5E+02 0.0033 22.6 8.6 82 4-101 48-130 (326)
351 cd01836 FeeA_FeeB_like SGNH_hy 42.2 1E+02 0.0022 21.2 5.6 77 23-99 23-113 (191)
352 PF09198 T4-Gluco-transf: Bact 42.1 22 0.00048 18.6 1.6 37 4-40 1-37 (38)
353 cd06281 PBP1_LacI_like_5 Ligan 41.9 1.2E+02 0.0026 21.9 6.1 56 6-67 2-64 (269)
354 PF01812 5-FTHF_cyc-lig: 5-for 41.8 10 0.00023 26.8 0.5 48 58-106 117-169 (186)
355 TIGR02634 xylF D-xylose ABC tr 41.5 44 0.00096 25.1 3.9 42 24-67 15-63 (302)
356 PRK06425 histidinol-phosphate 41.2 1.4E+02 0.0029 22.9 6.6 65 29-95 92-158 (332)
357 PRK15482 transcriptional regul 41.2 1.5E+02 0.0033 22.2 7.0 82 4-100 136-217 (285)
358 cd06293 PBP1_LacI_like_11 Liga 41.1 87 0.0019 22.6 5.3 58 6-67 2-64 (269)
359 PRK09701 D-allose transporter 40.8 1.6E+02 0.0034 22.2 7.1 60 4-67 25-91 (311)
360 COG3265 GntK Gluconate kinase 40.7 57 0.0012 23.2 3.9 37 65-101 40-76 (161)
361 cd06313 PBP1_ABC_sugar_binding 39.4 91 0.002 22.8 5.2 37 29-66 21-63 (272)
362 PF06490 FleQ: Flagellar regul 39.4 62 0.0014 21.0 3.9 51 5-67 1-51 (109)
363 PF07090 DUF1355: Protein of u 39.3 14 0.00029 26.6 0.7 70 26-95 29-104 (177)
364 PF01070 FMN_dh: FMN-dependent 39.1 79 0.0017 25.1 5.1 59 57-115 245-307 (356)
365 PF00289 CPSase_L_chain: Carba 39.0 27 0.00058 22.9 2.1 50 4-66 3-52 (110)
366 PRK11921 metallo-beta-lactamas 38.9 1.4E+02 0.0031 23.7 6.6 61 3-68 247-310 (394)
367 cd01541 PBP1_AraR Ligand-bindi 38.9 1.5E+02 0.0032 21.4 7.0 58 6-68 2-65 (273)
368 PRK10264 hydrogenase 1 maturat 38.7 43 0.00093 24.4 3.3 60 1-64 1-63 (195)
369 COG0212 5-formyltetrahydrofola 38.6 25 0.00054 25.3 2.0 48 57-107 116-168 (191)
370 cd03825 GT1_wcfI_like This fam 38.6 1.5E+02 0.0032 22.0 6.4 58 4-65 1-58 (365)
371 PF02056 Glyco_hydro_4: Family 38.4 29 0.00062 25.1 2.3 18 92-109 160-177 (183)
372 cd01542 PBP1_TreR_like Ligand- 38.2 1.5E+02 0.0032 21.1 6.6 41 25-67 17-64 (259)
373 PRK10333 5-formyltetrahydrofol 37.8 25 0.00055 25.0 1.9 49 56-107 107-160 (182)
374 PRK08591 acetyl-CoA carboxylas 37.7 1.9E+02 0.004 23.3 7.1 32 3-45 2-33 (451)
375 cd06271 PBP1_AglR_RafR_like Li 37.7 63 0.0014 23.1 4.1 40 28-67 24-68 (268)
376 CHL00067 rps2 ribosomal protei 37.6 48 0.001 24.7 3.4 31 58-99 161-191 (230)
377 cd01545 PBP1_SalR Ligand-bindi 37.4 1.5E+02 0.0033 21.1 7.3 42 25-67 17-65 (270)
378 cd06296 PBP1_CatR_like Ligand- 37.3 1.5E+02 0.0033 21.1 6.3 41 27-67 19-64 (270)
379 cd06323 PBP1_ribose_binding Pe 37.2 1.1E+02 0.0023 21.9 5.2 60 28-98 20-86 (268)
380 PF00532 Peripla_BP_1: Peripla 36.5 1.1E+02 0.0024 22.9 5.4 58 4-67 2-65 (279)
381 PLN00060 meiotic recombination 36.3 1.4E+02 0.0029 24.3 6.0 50 57-113 233-288 (384)
382 cd01452 VWA_26S_proteasome_sub 36.3 65 0.0014 23.3 3.9 45 60-109 109-161 (187)
383 PRK11303 DNA-binding transcrip 36.2 1.8E+02 0.004 21.7 6.7 59 4-67 62-126 (328)
384 PRK13059 putative lipid kinase 35.9 1.9E+02 0.0042 21.9 8.2 63 3-69 1-67 (295)
385 PF01866 Diphthamide_syn: Puta 35.5 1.8E+02 0.0038 22.5 6.4 65 3-71 209-273 (307)
386 TIGR01839 PHA_synth_II poly(R) 35.5 1.7E+02 0.0037 25.0 6.7 17 91-107 288-304 (560)
387 PF00365 PFK: Phosphofructokin 35.4 83 0.0018 24.2 4.5 43 61-108 4-46 (282)
388 PRK03620 5-dehydro-4-deoxygluc 35.2 1.1E+02 0.0023 23.6 5.1 43 57-99 40-84 (303)
389 cd06549 GH18_trifunctional GH1 34.9 2.1E+02 0.0044 21.9 6.7 56 10-65 111-167 (298)
390 PRK07178 pyruvate carboxylase 34.8 2.1E+02 0.0045 23.5 7.0 33 3-46 2-34 (472)
391 PRK01710 murD UDP-N-acetylmura 34.7 2E+02 0.0044 23.3 6.9 32 3-45 14-45 (458)
392 cd01839 SGNH_arylesterase_like 34.7 1.6E+02 0.0035 20.6 8.6 67 24-90 26-116 (208)
393 PRK00421 murC UDP-N-acetylmura 34.7 2.1E+02 0.0047 23.1 7.1 54 4-67 8-75 (461)
394 COG0075 Serine-pyruvate aminot 34.5 37 0.00081 27.4 2.6 50 5-65 82-138 (383)
395 PRK13606 LPPG:FO 2-phospho-L-l 34.4 31 0.00068 27.0 2.1 39 56-99 183-222 (303)
396 PRK05294 carB carbamoyl phosph 34.2 3E+02 0.0064 25.3 8.4 43 3-45 554-596 (1066)
397 PRK11337 DNA-binding transcrip 34.2 1.6E+02 0.0035 22.1 6.0 81 4-100 141-222 (292)
398 COG3199 Predicted inorganic po 34.2 27 0.00058 28.0 1.7 34 58-102 100-133 (355)
399 PF07598 DUF1561: Protein of u 34.1 60 0.0013 27.8 3.7 34 76-109 370-408 (632)
400 cd06289 PBP1_MalI_like Ligand- 33.8 1.7E+02 0.0038 20.7 6.2 38 28-67 20-64 (268)
401 cd01828 sialate_O-acetylestera 33.8 1.5E+02 0.0032 19.9 5.3 43 57-99 47-94 (169)
402 cd06297 PBP1_LacI_like_12 Liga 33.7 1.8E+02 0.004 21.0 6.5 42 26-67 18-64 (269)
403 PRK09189 uroporphyrinogen-III 33.6 1.6E+02 0.0035 21.4 5.7 54 3-67 118-179 (240)
404 KOG3093 5-formyltetrahydrofola 33.5 44 0.00095 24.5 2.5 49 58-106 128-182 (200)
405 cd07014 S49_SppA Signal peptid 33.3 1.1E+02 0.0024 21.3 4.6 46 58-105 39-88 (177)
406 cd06285 PBP1_LacI_like_7 Ligan 33.1 1.6E+02 0.0035 21.0 5.7 57 6-67 2-64 (265)
407 COG2185 Sbm Methylmalonyl-CoA 32.8 1.7E+02 0.0037 20.4 5.9 77 1-88 10-90 (143)
408 cd06283 PBP1_RegR_EndR_KdgR_li 32.7 1.3E+02 0.0029 21.4 5.1 39 28-67 20-64 (267)
409 PRK08811 uroporphyrinogen-III 32.4 1.9E+02 0.0042 21.8 6.1 34 3-47 138-171 (266)
410 cd06270 PBP1_GalS_like Ligand 32.4 1.7E+02 0.0036 21.0 5.6 41 26-67 18-64 (268)
411 COG2984 ABC-type uncharacteriz 32.2 2.6E+02 0.0056 22.2 8.0 82 4-97 160-244 (322)
412 PLN02812 5-formyltetrahydrofol 32.2 43 0.00093 24.4 2.4 50 57-106 130-188 (211)
413 PF03969 AFG1_ATPase: AFG1-lik 32.2 1E+02 0.0022 24.6 4.7 51 57-109 284-334 (362)
414 TIGR01011 rpsB_bact ribosomal 32.1 51 0.0011 24.5 2.8 31 58-99 155-185 (225)
415 COG1184 GCD2 Translation initi 31.6 1.6E+02 0.0035 23.1 5.5 84 5-102 147-231 (301)
416 PRK10222 PTS system L-ascorbat 31.5 1.3E+02 0.0029 18.6 4.3 35 29-65 7-41 (85)
417 TIGR03127 RuMP_HxlB 6-phospho 31.3 1.8E+02 0.0039 20.1 9.4 76 4-100 31-107 (179)
418 TIGR00514 accC acetyl-CoA carb 31.3 2.8E+02 0.0061 22.4 7.6 32 3-45 2-33 (449)
419 PRK10446 ribosomal protein S6 31.1 1.7E+02 0.0037 22.1 5.7 54 4-65 1-64 (300)
420 TIGR00640 acid_CoA_mut_C methy 31.0 1.7E+02 0.0037 19.7 6.1 57 3-67 2-62 (132)
421 TIGR00322 diphth2_R diphthamid 30.5 1.9E+02 0.0041 22.8 5.9 68 3-74 232-299 (332)
422 PF13380 CoA_binding_2: CoA bi 30.5 1.6E+02 0.0034 19.2 7.4 55 4-65 1-62 (116)
423 cd06278 PBP1_LacI_like_2 Ligan 30.3 1.9E+02 0.0041 20.5 5.6 39 29-67 21-63 (266)
424 COG0252 AnsB L-asparaginase/ar 30.2 96 0.0021 24.8 4.2 37 57-98 253-289 (351)
425 cd06277 PBP1_LacI_like_1 Ligan 30.1 2E+02 0.0043 20.6 5.7 40 28-67 23-67 (268)
426 PRK14099 glycogen synthase; Pr 30.1 68 0.0015 26.4 3.5 46 1-46 1-46 (485)
427 TIGR03566 FMN_reduc_MsuE FMN r 29.7 1.9E+02 0.0042 20.0 5.9 88 5-101 1-110 (174)
428 PRK01390 murD UDP-N-acetylmura 29.7 3E+02 0.0065 22.2 7.5 54 3-67 9-74 (460)
429 cd06314 PBP1_tmGBP Periplasmic 29.5 2.2E+02 0.0047 20.5 6.1 43 25-67 16-64 (271)
430 cd06259 YdcF-like YdcF-like. Y 29.4 1.7E+02 0.0038 19.4 5.3 11 60-70 1-11 (150)
431 TIGR02727 MTHFS_bact 5,10-meth 29.3 45 0.00097 23.5 2.0 48 56-107 113-165 (181)
432 PF04230 PS_pyruv_trans: Polys 29.3 2.1E+02 0.0045 20.2 7.1 43 59-102 64-109 (286)
433 cd06324 PBP1_ABC_sugar_binding 29.1 2.4E+02 0.0053 20.9 6.5 41 26-67 19-67 (305)
434 PRK10697 DNA-binding transcrip 28.8 51 0.0011 22.2 2.1 19 91-112 14-32 (118)
435 PF12697 Abhydrolase_6: Alpha/ 28.5 1.1E+02 0.0024 20.5 3.9 34 76-109 51-84 (228)
436 PRK12480 D-lactate dehydrogena 28.5 63 0.0014 25.3 2.9 52 3-67 1-54 (330)
437 PTZ00249 variable surface prot 28.4 61 0.0013 27.2 2.9 45 65-109 410-456 (516)
438 PRK07116 flavodoxin; Provision 28.2 2E+02 0.0043 19.6 8.4 41 55-99 73-113 (160)
439 cd06306 PBP1_TorT-like TorT-li 28.2 2.3E+02 0.0051 20.5 7.2 59 5-67 1-66 (268)
440 cd01844 SGNH_hydrolase_like_6 28.2 1.8E+02 0.0038 19.9 4.9 41 58-98 57-99 (177)
441 PRK05395 3-dehydroquinate dehy 28.1 60 0.0013 22.7 2.4 41 28-68 34-77 (146)
442 cd08194 Fe-ADH6 Iron-containin 28.0 2.5E+02 0.0055 22.1 6.3 58 4-68 24-90 (375)
443 TIGR01506 ribC_arch riboflavin 27.8 1.6E+02 0.0034 20.7 4.5 78 31-108 20-108 (151)
444 cd06284 PBP1_LacI_like_6 Ligan 27.7 2E+02 0.0043 20.4 5.3 56 6-67 2-64 (267)
445 PRK11083 DNA-binding response 27.7 1.2E+02 0.0026 20.9 4.1 31 1-41 1-31 (228)
446 COG0677 WecC UDP-N-acetyl-D-ma 27.7 1E+02 0.0023 25.4 4.0 61 2-65 321-395 (436)
447 cd04502 SGNH_hydrolase_like_7 27.6 2E+02 0.0043 19.4 5.1 42 58-99 50-96 (171)
448 KOG0876 Manganese superoxide d 27.6 1.7E+02 0.0038 22.1 4.9 17 17-33 127-143 (234)
449 PRK00683 murD UDP-N-acetylmura 27.4 3.2E+02 0.007 21.8 7.8 34 1-45 1-34 (418)
450 TIGR00619 sbcd exonuclease Sbc 27.2 2.4E+02 0.0052 21.0 5.8 41 58-98 39-81 (253)
451 PRK13435 response regulator; P 27.2 58 0.0013 21.2 2.2 30 1-40 3-32 (145)
452 PRK01261 aroD 3-dehydroquinate 27.0 86 0.0019 23.4 3.3 20 91-111 175-194 (229)
453 PF14511 RE_EcoO109I: Type II 27.0 50 0.0011 24.3 1.9 11 91-101 144-154 (200)
454 COG3243 PhaC Poly(3-hydroxyalk 26.9 2.3E+02 0.0049 23.6 5.8 30 82-111 171-201 (445)
455 TIGR00070 hisG ATP phosphoribo 26.9 1.4E+02 0.0031 21.5 4.3 38 24-63 115-153 (182)
456 PF07271 Cytadhesin_P30: Cytad 26.8 32 0.0007 26.5 1.0 22 93-114 70-91 (279)
457 COG0131 HisB Imidazoleglycerol 26.7 27 0.0006 25.5 0.5 17 97-114 73-89 (195)
458 PF04007 DUF354: Protein of un 26.5 2.1E+02 0.0045 22.7 5.5 101 4-112 1-105 (335)
459 PRK05452 anaerobic nitric oxid 26.4 2.3E+02 0.005 23.4 6.0 59 3-66 251-312 (479)
460 COG1312 UxuA D-mannonate dehyd 26.0 1.1E+02 0.0023 24.7 3.7 26 75-102 79-104 (362)
461 TIGR01769 GGGP geranylgeranylg 25.8 1.6E+02 0.0034 21.6 4.4 33 58-96 24-57 (205)
462 KOG3325 Membrane coat complex 25.8 15 0.00033 26.1 -0.9 13 92-104 78-90 (183)
463 PLN02417 dihydrodipicolinate s 25.2 2.1E+02 0.0045 21.7 5.2 45 57-101 34-79 (280)
464 PRK10307 putative glycosyl tra 25.2 1.5E+02 0.0032 23.2 4.5 41 4-46 1-41 (412)
465 PRK04308 murD UDP-N-acetylmura 25.1 3.6E+02 0.0079 21.6 7.3 32 3-45 5-36 (445)
466 COG0329 DapA Dihydrodipicolina 25.0 2E+02 0.0043 22.2 5.1 43 57-99 37-81 (299)
467 COG2044 Predicted peroxiredoxi 24.8 2.3E+02 0.0049 19.2 6.8 101 4-122 3-104 (120)
468 cd06287 PBP1_LacI_like_8 Ligan 24.8 2.8E+02 0.0061 20.2 6.2 39 27-67 27-65 (269)
469 COG0426 FpaA Uncharacterized f 24.7 2.5E+02 0.0054 22.9 5.7 68 26-94 260-332 (388)
470 TIGR02427 protocat_pcaD 3-oxoa 24.7 1.6E+02 0.0034 20.1 4.2 34 76-109 64-97 (251)
471 PRK09461 ansA cytoplasmic aspa 24.4 1.9E+02 0.0041 22.8 4.9 38 57-98 232-270 (335)
472 TIGR00768 rimK_fam alpha-L-glu 24.4 2.2E+02 0.0048 20.7 5.1 53 5-66 1-56 (277)
473 COG1736 DPH2 Diphthamide synth 24.3 2.6E+02 0.0057 22.4 5.7 68 2-74 236-304 (347)
474 PRK13584 hisG ATP phosphoribos 24.3 1.7E+02 0.0036 21.6 4.3 23 24-46 111-133 (204)
475 cd06311 PBP1_ABC_sugar_binding 24.2 1.6E+02 0.0034 21.3 4.3 33 57-98 59-91 (274)
476 PRK01686 hisG ATP phosphoribos 24.1 1.7E+02 0.0037 21.7 4.4 23 24-46 121-143 (215)
477 PLN02535 glycolate oxidase 23.9 3.6E+02 0.0078 21.7 6.4 57 57-114 243-304 (364)
478 cd00951 KDGDH 5-dehydro-4-deox 23.8 2.4E+02 0.0052 21.4 5.3 43 57-99 33-77 (289)
479 COG0745 OmpR Response regulato 23.8 66 0.0014 23.8 2.2 80 4-101 1-81 (229)
480 cd05005 SIS_PHI Hexulose-6-pho 23.7 2.5E+02 0.0055 19.4 10.0 77 4-100 34-110 (179)
481 cd05298 GH4_GlvA_pagL_like Gly 23.7 2.1E+02 0.0045 23.5 5.2 18 92-109 159-176 (437)
482 PRK05839 hypothetical protein; 23.7 3.5E+02 0.0077 21.0 7.9 64 31-95 124-191 (374)
483 PF00318 Ribosomal_S2: Ribosom 23.7 74 0.0016 23.2 2.4 30 59-99 144-173 (211)
484 PRK06975 bifunctional uroporph 23.7 2.2E+02 0.0047 24.7 5.5 53 4-67 140-202 (656)
485 PF10230 DUF2305: Uncharacteri 23.6 1.2E+02 0.0026 22.8 3.6 36 60-99 4-39 (266)
486 PRK10703 DNA-binding transcrip 23.4 3.3E+02 0.0071 20.5 7.2 59 4-67 60-124 (341)
487 PRK09548 PTS system ascorbate- 23.3 3.6E+02 0.0077 23.4 6.6 36 28-65 526-561 (602)
488 PRK13598 hisB imidazoleglycero 23.3 45 0.00097 24.5 1.1 17 96-113 71-87 (193)
489 cd01453 vWA_transcription_fact 23.3 2.7E+02 0.0059 19.5 5.4 34 83-116 127-165 (183)
490 PRK10936 TMAO reductase system 23.3 3.5E+02 0.0075 20.7 6.6 82 3-98 46-134 (343)
491 cd01829 SGNH_hydrolase_peri2 S 23.3 2.4E+02 0.0053 19.4 5.0 43 57-99 58-115 (200)
492 TIGR02826 RNR_activ_nrdG3 anae 23.1 1.9E+02 0.0041 19.9 4.2 30 59-95 62-91 (147)
493 PF04016 DUF364: Domain of unk 23.1 20 0.00042 24.8 -0.8 41 29-69 23-73 (147)
494 PF09370 TIM-br_sig_trns: TIM- 23.0 95 0.0021 24.0 2.9 29 81-109 3-31 (268)
495 PRK12311 rpsB 30S ribosomal pr 23.0 1.3E+02 0.0028 23.8 3.7 31 58-99 152-182 (326)
496 PF10609 ParA: ParA/MinD ATPas 22.9 1.2E+02 0.0025 19.0 2.8 18 81-98 42-59 (81)
497 PF02698 DUF218: DUF218 domain 22.9 1.1E+02 0.0024 20.5 3.0 9 59-67 2-10 (155)
498 COG3660 Predicted nucleoside-d 22.8 3.8E+02 0.0083 21.1 7.2 35 65-101 135-169 (329)
499 COG0129 IlvD Dihydroxyacid deh 22.8 2.3E+02 0.005 24.4 5.3 32 85-116 188-225 (575)
500 TIGR02690 resist_ArsH arsenica 22.7 3.2E+02 0.007 20.2 7.1 89 3-99 26-135 (219)
No 1
>PRK05665 amidotransferase; Provisional
Probab=99.97 E-value=2.7e-29 Score=187.93 Aligned_cols=115 Identities=31% Similarity=0.553 Sum_probs=103.5
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC--CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG--ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
|+| ||+||+++.+.+.+.+.||+|.++|.++|...+ .+++++++..+++|. ++++|||+||+||+++++++.+|+
T Consensus 1 ~~m-ki~IL~~~~~~~~~~~~~g~~~~~~~~ll~~~~~~~~~~~~~~~~~~~p~--~~~~~dgiiitGs~~~v~~~~pwi 77 (240)
T PRK05665 1 MSL-RICILETDVLRPELVAQYQGYGRMFEQLFARQPIAAEFVVYNVVQGDYPA--DDEKFDAYLVTGSKADSFGTDPWI 77 (240)
T ss_pred Cce-EEEEEECCCCCHHHHHHhCCHHHHHHHHHHhCCCCceEEEEeccCCCCCC--CcccCCEEEECCCCCCccccchHH
Confidence 666 699999999999999999999999999998876 457777877766664 578899999999999999988999
Q ss_pred HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165 79 CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK 118 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~ 118 (126)
.++.++|++++++++|+||||||||+||+++||+|.++++
T Consensus 78 ~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~ 117 (240)
T PRK05665 78 QTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQ 117 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCC
Confidence 9999999999999999999999999999999999998763
No 2
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.96 E-value=2.7e-29 Score=181.32 Aligned_cols=119 Identities=51% Similarity=0.907 Sum_probs=113.0
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
|..+|+|++.+.++.+.+.+.||.|.+++..+|++.|.+|+.+++.++++|..+++++|+|++|+||..+++++.+|+.+
T Consensus 2 ~~~kr~Alf~at~dsefvk~~yGgy~nvfvsllg~ege~wd~frV~~gefP~~~Dl~ky~gfvIsGS~~dAf~d~dWI~K 81 (245)
T KOG3179|consen 2 MEQKRIALFLATPDSEFVKKAYGGYFNVFVSLLGDEGEQWDLFRVIDGEFPQEEDLEKYDGFVISGSKHDAFSDADWIKK 81 (245)
T ss_pred ccceeEEEEecCCchhhhhhhhcCHHHHHHHHhcccCceeEEEEEecCCCCChhhhhhhceEEEeCCcccccccchHHHH
Confidence 55689999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCcc
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKI 119 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~~ 119 (126)
+..+++++....+||+|||||||++|++.|++|.+++|-
T Consensus 82 Lcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG 120 (245)
T KOG3179|consen 82 LCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKG 120 (245)
T ss_pred HHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCCCC
Confidence 999999998888999999999999999999999998753
No 3
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.96 E-value=3.8e-28 Score=181.38 Aligned_cols=113 Identities=21% Similarity=0.264 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
|+||+||+++.+.+.++++||+|.+++.+.+...+.+++++++..++.+ .++.+||+|||+||+.+++++.+|+.++.
T Consensus 1 ~~~i~iL~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~dgvvi~Gg~~~~~d~~~w~~~~~ 78 (237)
T PRK09065 1 VKPLLIIQTGTPPPSIRARYGDFPHWIRVALGLAEQPVVVVRVFAGEPL--PAPDDFAGVIITGSWAMVTDRLDWSERTA 78 (237)
T ss_pred CCcEEEEECCCCChhHHhhcCCHHHHHHHHhccCCceEEEEeccCCCCC--CChhhcCEEEEeCCCcccCCCchhHHHHH
Confidence 5789999999999999999999999999999999999999998865421 25688999999999999998889999999
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
++|+++++.++|+||||+|||+|++++||+|.+.+
T Consensus 79 ~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~ 113 (237)
T PRK09065 79 DWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNP 113 (237)
T ss_pred HHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCC
Confidence 99999999999999999999999999999998764
No 4
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.93 E-value=4.3e-25 Score=165.17 Aligned_cols=111 Identities=24% Similarity=0.271 Sum_probs=95.2
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
.++||+||++... +|.+++.++|++.|.+++++++..++ +.++++++||++||+||+.+++++.+|+..+
T Consensus 6 ~~~~vlvi~h~~~---------~~~g~l~~~l~~~g~~~~v~~~~~~~-~~p~~l~~~dgvii~Ggp~~~~d~~~wi~~~ 75 (239)
T PRK06490 6 DKRPVLIVLHQER---------STPGRVGQLLQERGYPLDIRRPRLGD-PLPDTLEDHAGAVIFGGPMSANDPDDFIRRE 75 (239)
T ss_pred CCceEEEEecCCC---------CCChHHHHHHHHCCCceEEEeccCCC-CCCCcccccCEEEEECCCCCCCCCchHHHHH
Confidence 3689999999775 46678899999999999999887543 2233678999999999999999988999999
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc---cccc
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK---IAGT 122 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~---~~g~ 122 (126)
.++|+++++.++|+||||+|||+|++++||+|.+.++ .+|+
T Consensus 76 ~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~ 119 (239)
T PRK06490 76 IDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGY 119 (239)
T ss_pred HHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccce
Confidence 9999999999999999999999999999999998652 5554
No 5
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.91 E-value=1.3e-23 Score=156.80 Aligned_cols=110 Identities=22% Similarity=0.194 Sum_probs=93.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCC--chHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGN--DVWICK 80 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~--~~~~~~ 80 (126)
|+||+|+++.+... .+.+.++|++.|.+++++++..++.+. .++.+||+|||+|||.+++++ .+|+..
T Consensus 2 m~~ilviqh~~~e~---------~g~i~~~L~~~g~~~~v~~~~~~~~~~-~~~~~~d~lii~Ggp~~~~d~~~~p~~~~ 71 (234)
T PRK07053 2 MKTAVAIRHVAFED---------LGSFEQVLGARGYRVRYVDVGVDDLET-LDALEPDLLVVLGGPIGVYDDELYPFLAP 71 (234)
T ss_pred CceEEEEECCCCCC---------ChHHHHHHHHCCCeEEEEecCCCccCC-CCccCCCEEEECCCCCCCCCCCcCCcHHH
Confidence 67999999988754 235778888999999999987655432 256789999999999999875 489999
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC-Cccccc
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA-SKIAGT 122 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~-~~~~g~ 122 (126)
+.++|+++++.++|+||||+|||+|++++||+|.++ .+++|+
T Consensus 72 ~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~ 114 (234)
T PRK07053 72 EIALLRQRLAAGLPTLGICLGAQLIARALGARVYPGGQKEIGW 114 (234)
T ss_pred HHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecCCCCeEeE
Confidence 999999999999999999999999999999999975 356665
No 6
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.89 E-value=1.2e-22 Score=148.28 Aligned_cols=110 Identities=26% Similarity=0.375 Sum_probs=88.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
+.+|+|++.+. .|++.+.+++++.|..+..+.+...+... ....++|++||+|||++++++.+|..++.
T Consensus 1 ~~~ilIld~g~----------q~~~li~r~~re~g~v~~e~~~~~~~~~~-~~~~~~~giIlsGgp~sv~~~~~w~~~~~ 69 (198)
T COG0518 1 MRKILILDFGG----------QYLGLIARRLRELGYVYSEIVPYTGDAEE-LPLDSPDGIIISGGPMSVYDEDPWLPREK 69 (198)
T ss_pred CcEEEEEeCCC----------cHhHHHHHHHHHcCCceEEEEeCCCCccc-ccccCCCEEEEcCCCCCCccccccchhHH
Confidence 46888987766 47888999999999555444443322211 13356799999999999999888999999
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-cccccc
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGTA 123 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~~ 123 (126)
++|.++...++|+||||+|||+||.+|||+|.+++ +++|+.
T Consensus 70 ~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~~E~G~~ 111 (198)
T COG0518 70 DLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPKREIGWT 111 (198)
T ss_pred HHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCCCccceE
Confidence 99999887888999999999999999999999976 788875
No 7
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.89 E-value=1.2e-22 Score=152.21 Aligned_cols=115 Identities=17% Similarity=0.226 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCC----chHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGN----DVWI 78 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~----~~~~ 78 (126)
|++|+||++++.+ .++. |+|..++.+ .......++++++...+.|. .++++||+|||+||+.+++++ .+|+
T Consensus 1 m~~ililq~~~~~-~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~dgvIi~Gg~~~~~d~~~~~~pw~ 75 (242)
T PRK07567 1 MKPFLLLSPRPED-EAAD--AEYAAFLRY-TGLDPAELRRIRLDREPLPD-LDLDDYSGVIVGGSPFNVSDPAESKSPWQ 75 (242)
T ss_pred CCcEEEEecCCCc-cccc--chHHHHHHh-cCCCccceEEEecccCCCCC-CCHhhccEEEEcCCCCcCCCCCCccchHH
Confidence 5679999999984 3322 666555543 22223347777776654433 267899999999999999886 6899
Q ss_pred HHHHHHHHH----HHhcCCcEEEEchHHHHHHHHhCCccccC-Cccccc
Q 033165 79 CKLIALLKQ----LDSLRKKVLGICFGHQVRAITVFSSHINA-SKIAGT 122 (126)
Q Consensus 79 ~~~~~~i~~----~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~-~~~~g~ 122 (126)
..+.++|++ +.+.++|+||||+|||+|++++||+|.+. .+++|+
T Consensus 76 ~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~~~g~e~G~ 124 (242)
T PRK07567 76 RRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDRTYGEPVGA 124 (242)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEecCCCCcCcc
Confidence 876655544 44789999999999999999999999873 234554
No 8
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.88 E-value=1.2e-22 Score=146.15 Aligned_cols=103 Identities=18% Similarity=0.225 Sum_probs=82.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-CCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-DDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
|++|+++ ||||||++++.++|++.|.++.+++-. +.... -+..++|+|||+.||.++.| ....
T Consensus 1 ~~~IL~I----------DNyDSFtyNLv~yl~~lg~~v~V~rnd--~~~~~~~~~~~pd~iviSPGPG~P~d----~G~~ 64 (191)
T COG0512 1 MMMILLI----------DNYDSFTYNLVQYLRELGAEVTVVRND--DISLELIEALKPDAIVISPGPGTPKD----AGIS 64 (191)
T ss_pred CceEEEE----------ECccchHHHHHHHHHHcCCceEEEECC--ccCHHHHhhcCCCEEEEcCCCCChHH----cchH
Confidence 5688888 458899999999999999999988843 12111 12246999999999998854 2346
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCccccc
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAGT 122 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~~~g~ 122 (126)
.++|+++ ..++|+||||+|||.|++++||+|.+++++++.
T Consensus 65 ~~~i~~~-~~~~PiLGVCLGHQai~~~fGg~V~~a~~~~HG 104 (191)
T COG0512 65 LELIRRF-AGRIPILGVCLGHQAIAEAFGGKVVRAKEPMHG 104 (191)
T ss_pred HHHHHHh-cCCCCEEEECccHHHHHHHhCCEEEecCCCcCC
Confidence 6778887 567999999999999999999999999877764
No 9
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=99.87 E-value=1.2e-21 Score=141.74 Aligned_cols=96 Identities=19% Similarity=0.254 Sum_probs=77.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
|||+|+++ +++|+.++.++|++.|.+++++++...+ +++++++|+|||+|||..+ + +...+.+
T Consensus 2 ~~iliid~----------~dsf~~~i~~~l~~~g~~~~v~~~~~~~---~~~l~~~d~iIi~gGp~~~-~---~~~~~~~ 64 (190)
T PRK06895 2 TKLLIINN----------HDSFTFNLVDLIRKLGVPMQVVNVEDLD---LDEVENFSHILISPGPDVP-R---AYPQLFA 64 (190)
T ss_pred cEEEEEeC----------CCchHHHHHHHHHHcCCcEEEEECCccC---hhHhccCCEEEECCCCCCh-H---HhhHHHH
Confidence 78999966 5579999999999999999999875432 2357789999999999754 2 2334566
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
+|++ ++.++|+||||+|||+|+.++||+|.+.+
T Consensus 65 ~i~~-~~~~~PiLGIClG~Qlla~~~Gg~V~~~~ 97 (190)
T PRK06895 65 MLER-YHQHKSILGVCLGHQTLCEFFGGELYNLN 97 (190)
T ss_pred HHHH-hcCCCCEEEEcHHHHHHHHHhCCeEeecC
Confidence 7776 56799999999999999999999998754
No 10
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.87 E-value=2.2e-21 Score=144.74 Aligned_cols=109 Identities=16% Similarity=0.222 Sum_probs=87.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCC---CchHH--
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHG---NDVWI-- 78 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~---~~~~~-- 78 (126)
|||+|+++..-.+. ..+..++++.|.+++++++..++ +.+.++++||+|||+||+.++.+ +.+|+
T Consensus 1 m~i~vi~h~~~e~~---------g~~~~~~~~~g~~~~~~~~~~g~-~~p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~ 70 (235)
T PRK08250 1 MRVHFIIHESFEAP---------GAYLKWAENRGYDISYSRVYAGE-ALPENADGFDLLIVMGGPQSPRTTREECPYFDS 70 (235)
T ss_pred CeEEEEecCCCCCc---------hHHHHHHHHCCCeEEEEEccCCC-CCCCCccccCEEEECCCCCChhhccccccccch
Confidence 58999999887653 23556667789999998887654 22235678999999999988643 45788
Q ss_pred HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165 79 CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT 122 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~ 122 (126)
..+.++|+++++.++|+||||+|+|+|++++||+|.+++ +++|+
T Consensus 71 ~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~~e~G~ 115 (235)
T PRK08250 71 KAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPEKEIGY 115 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCCCceeE
Confidence 678899999999999999999999999999999999865 46665
No 11
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.85 E-value=1.1e-20 Score=135.82 Aligned_cols=103 Identities=33% Similarity=0.470 Sum_probs=85.3
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC---CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC-CCCchHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG---ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA-HGNDVWICK 80 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~-~~~~~~~~~ 80 (126)
||+||+++.+.+ .+.+.+++++.+ .+++++++...+. ..+++++|+||++||+.++ ++..+|+..
T Consensus 1 ~i~il~~~~~~~---------~~~~~~~l~~~g~~~~~~~~~~~~~~~~--~~~~~~~dgvil~Gg~~~~~~~~~~~~~~ 69 (188)
T cd01741 1 RILILQHDTPEG---------PGLFEDLLREAGAETIEIDVVDVYAGEL--LPDLDDYDGLVILGGPMSVDEDDYPWLKK 69 (188)
T ss_pred CEEEEECCCCCC---------cchHHHHHHhcCCCCceEEEEecCCCCC--CCCcccCCEEEECCCCccCCccCChHHHH
Confidence 689999999864 123556666666 6888888876543 2367899999999999888 566689999
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK 118 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~ 118 (126)
+.++++.+.++++|++|||+|+|+|+.++||++.+.++
T Consensus 70 ~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~ 107 (188)
T cd01741 70 LKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPK 107 (188)
T ss_pred HHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCC
Confidence 99999999999999999999999999999999998754
No 12
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=99.84 E-value=5.1e-21 Score=138.37 Aligned_cols=93 Identities=19% Similarity=0.203 Sum_probs=71.1
Q ss_pred HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
||||||++++.++|++.|.++.+++....++... ...++|+|||+|||.++.+.. ...++++. ++.++|+||||
T Consensus 6 dn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-~~~~~d~iils~GPg~p~~~~----~~~~~~~~-~~~~~PiLGIC 79 (187)
T PRK08007 6 DNYDSFTWNLYQYFCELGADVLVKRNDALTLADI-DALKPQKIVISPGPCTPDEAG----ISLDVIRH-YAGRLPILGVC 79 (187)
T ss_pred ECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-HhcCCCEEEEcCCCCChHHCC----ccHHHHHH-hcCCCCEEEEC
Confidence 4678999999999999999999988542111111 113699999999999986542 23445555 45789999999
Q ss_pred hHHHHHHHHhCCccccCCc
Q 033165 100 FGHQVRAITVFSSHINASK 118 (126)
Q Consensus 100 ~G~Q~la~~~Gg~v~~~~~ 118 (126)
+|||+|+.++||++.+.++
T Consensus 80 lG~Q~la~a~Gg~v~~~~~ 98 (187)
T PRK08007 80 LGHQAMAQAFGGKVVRAAK 98 (187)
T ss_pred HHHHHHHHHcCCEEEeCCC
Confidence 9999999999999998654
No 13
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=99.83 E-value=1.2e-20 Score=136.60 Aligned_cols=91 Identities=16% Similarity=0.233 Sum_probs=70.6
Q ss_pred HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEE
Q 033165 20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
++||||++++.++|++.|.++++++.....+ +++ .++|+||++|||.++.++.. ..++++. .+.++|+||
T Consensus 6 d~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~---~~~~~~~~~~iilsgGP~~~~~~~~----~~~~i~~-~~~~~PiLG 77 (191)
T PRK06774 6 DNYDSFTYNLYQYFCELGTEVMVKRNDELQL---TDIEQLAPSHLVISPGPCTPNEAGI----SLAVIRH-FADKLPILG 77 (191)
T ss_pred ECCCchHHHHHHHHHHCCCcEEEEeCCCCCH---HHHHhcCCCeEEEcCCCCChHhCCC----chHHHHH-hcCCCCEEE
Confidence 4578999999999999999999888542211 122 36899999999999876532 2344544 457899999
Q ss_pred EchHHHHHHHHhCCccccCCc
Q 033165 98 ICFGHQVRAITVFSSHINASK 118 (126)
Q Consensus 98 IC~G~Q~la~~~Gg~v~~~~~ 118 (126)
||+|||+|+.++||++.+.++
T Consensus 78 IC~G~Qlla~~~GG~v~~~~~ 98 (191)
T PRK06774 78 VCLGHQALGQAFGARVVRARQ 98 (191)
T ss_pred ECHHHHHHHHHhCCEEEeCCc
Confidence 999999999999999998653
No 14
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=99.82 E-value=1.8e-20 Score=136.42 Aligned_cols=93 Identities=17% Similarity=0.216 Sum_probs=70.7
Q ss_pred HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
+|||+|++++.++|++.|.++.+++......... ...++|+||++|||.++++... ..+.++. ++.++|+||||
T Consensus 6 dn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-~~~~~d~iIlsgGP~~p~~~~~----~~~~i~~-~~~~~PvLGIC 79 (195)
T PRK07649 6 DNYDSFTFNLVQFLGELGQELVVKRNDEVTISDI-ENMKPDFLMISPGPCSPNEAGI----SMEVIRY-FAGKIPIFGVC 79 (195)
T ss_pred eCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-hhCCCCEEEECCCCCChHhCCC----chHHHHH-hcCCCCEEEEc
Confidence 4577999999999999999999988543211110 1246999999999999876433 2334443 34689999999
Q ss_pred hHHHHHHHHhCCccccCCc
Q 033165 100 FGHQVRAITVFSSHINASK 118 (126)
Q Consensus 100 ~G~Q~la~~~Gg~v~~~~~ 118 (126)
+|||+|++++||+|.+.++
T Consensus 80 lG~Qlla~~lGg~V~~~~~ 98 (195)
T PRK07649 80 LGHQSIAQVFGGEVVRAER 98 (195)
T ss_pred HHHHHHHHHcCCEEeeCCC
Confidence 9999999999999998653
No 15
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=99.82 E-value=5.2e-21 Score=137.68 Aligned_cols=93 Identities=28% Similarity=0.436 Sum_probs=77.8
Q ss_pred HhhCCHHHHHHHHHhhCCCeEEEEEccCCCC-CCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEF-PDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
|+|++|+.++.+.+++.+.+++++++..... +.. ++.+||+|||+||+.++++ +..+.++++++.+.++|+|||
T Consensus 4 D~~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~d~iii~Gg~~~~~d----~~~~~~~i~~~~~~~~PilGI 78 (192)
T PF00117_consen 4 DNGDSFTHSLVRALRELGIDVEVVRVDSDFEEPLE-DLDDYDGIIISGGPGSPYD----IEGLIELIREARERKIPILGI 78 (192)
T ss_dssp ESSHTTHHHHHHHHHHTTEEEEEEETTGGHHHHHH-HTTTSSEEEEECESSSTTS----HHHHHHHHHHHHHTTSEEEEE
T ss_pred eCCHHHHHHHHHHHHHCCCeEEEEECCCchhhhhh-hhcCCCEEEECCcCCcccc----ccccccccccccccceEEEEE
Confidence 3466899999999999999999999764211 100 3689999999999999876 567788889988889999999
Q ss_pred chHHHHHHHHhCCccccCC
Q 033165 99 CFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 99 C~G~Q~la~~~Gg~v~~~~ 117 (126)
|+|||+|++++|+++.+.+
T Consensus 79 C~G~Q~la~~~G~~v~~~~ 97 (192)
T PF00117_consen 79 CLGHQILAHALGGKVVPSP 97 (192)
T ss_dssp THHHHHHHHHTTHEEEEEE
T ss_pred eehhhhhHHhcCCcccccc
Confidence 9999999999999998754
No 16
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=99.81 E-value=4.8e-20 Score=133.72 Aligned_cols=93 Identities=15% Similarity=0.195 Sum_probs=72.2
Q ss_pred HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
|+||||++++.++|++.|.++++++....+++.... .++|++|++|||.+++++..+ .++++. ++.++|+||||
T Consensus 6 d~~dsft~~~~~~l~~~g~~~~~~~~~~~~~~~~~~-~~~~~iilsgGp~~~~~~~~~----~~~i~~-~~~~~PiLGIC 79 (193)
T PRK08857 6 DNYDSFTYNLYQYFCELGAQVKVVRNDEIDIDGIEA-LNPTHLVISPGPCTPNEAGIS----LQAIEH-FAGKLPILGVC 79 (193)
T ss_pred ECCCCcHHHHHHHHHHCCCcEEEEECCCCCHHHHhh-CCCCEEEEeCCCCChHHCcch----HHHHHH-hcCCCCEEEEc
Confidence 357789999999999999999999875332211112 358999999999998765433 345554 46789999999
Q ss_pred hHHHHHHHHhCCccccCCc
Q 033165 100 FGHQVRAITVFSSHINASK 118 (126)
Q Consensus 100 ~G~Q~la~~~Gg~v~~~~~ 118 (126)
+|||+|+.++||++.+.++
T Consensus 80 lG~Qlia~a~Gg~v~~~~~ 98 (193)
T PRK08857 80 LGHQAIAQVFGGQVVRARQ 98 (193)
T ss_pred HHHHHHHHHhCCEEEeCCC
Confidence 9999999999999998654
No 17
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=99.81 E-value=1.4e-19 Score=133.48 Aligned_cols=101 Identities=16% Similarity=0.269 Sum_probs=78.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-CCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-DDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
|||+|+++. ++|+.++.++|.+.|.++.+++......+.. +.+.++|||||+|||.++.+. ....
T Consensus 1 ~~ilv~d~~----------~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~----~~~~ 66 (214)
T PRK07765 1 MRILVVDNY----------DSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERA----GASI 66 (214)
T ss_pred CeEEEEECC----------CcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhc----chHH
Confidence 578888775 3578889999999999999988654221111 124579999999999876432 3345
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK 118 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~ 118 (126)
++++++.+.++|+||||+|||+|+.++||++.+.++
T Consensus 67 ~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~ 102 (214)
T PRK07765 67 DMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPE 102 (214)
T ss_pred HHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCC
Confidence 788888888999999999999999999999997643
No 18
>PRK05637 anthranilate synthase component II; Provisional
Probab=99.81 E-value=1.1e-19 Score=133.60 Aligned_cols=97 Identities=15% Similarity=0.169 Sum_probs=74.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
|.||+|+++ +++|++++.++|++.|..+++++... +. +++ .++|+|||+|||.++++.. .
T Consensus 1 ~~~il~iD~----------~dsf~~nl~~~l~~~g~~~~v~~~~~---~~-~~l~~~~~~~iIlsgGPg~~~d~~----~ 62 (208)
T PRK05637 1 MTHVVLIDN----------HDSFVYNLVDAFAVAGYKCTVFRNTV---PV-EEILAANPDLICLSPGPGHPRDAG----N 62 (208)
T ss_pred CCEEEEEEC----------CcCHHHHHHHHHHHCCCcEEEEeCCC---CH-HHHHhcCCCEEEEeCCCCCHHHhh----H
Confidence 568999965 45799999999999999999887532 11 122 3789999999999886532 2
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASK 118 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~ 118 (126)
..++++.+. .++|+||||+|||+|+.++||++.+...
T Consensus 63 ~~~li~~~~-~~~PiLGIClG~Qlla~alGG~V~~~~~ 99 (208)
T PRK05637 63 MMALIDRTL-GQIPLLGICLGFQALLEHHGGKVEPCGP 99 (208)
T ss_pred HHHHHHHHh-CCCCEEEEcHHHHHHHHHcCCeeccCCc
Confidence 345565443 5799999999999999999999986543
No 19
>PRK05670 anthranilate synthase component II; Provisional
Probab=99.81 E-value=1e-19 Score=131.49 Aligned_cols=97 Identities=15% Similarity=0.241 Sum_probs=73.8
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALL 85 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i 85 (126)
|+|+++. ++|++++.++|++.|.++++++....+....+.+ ++|+||++|||.++++.. ...+++
T Consensus 2 iliid~~----------d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~~-~~dglIlsgGpg~~~d~~----~~~~~l 66 (189)
T PRK05670 2 ILLIDNY----------DSFTYNLVQYLGELGAEVVVYRNDEITLEEIEAL-NPDAIVLSPGPGTPAEAG----ISLELI 66 (189)
T ss_pred EEEEECC----------CchHHHHHHHHHHCCCcEEEEECCCCCHHHHHhC-CCCEEEEcCCCCChHHcc----hHHHHH
Confidence 7788664 5799999999999999999998653221111223 489999999998885532 234466
Q ss_pred HHHHhcCCcEEEEchHHHHHHHHhCCccccCCc
Q 033165 86 KQLDSLRKKVLGICFGHQVRAITVFSSHINASK 118 (126)
Q Consensus 86 ~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~ 118 (126)
+++ +.++|+||||+|||+|+.++||++.+.++
T Consensus 67 ~~~-~~~~PvLGIClG~Qlla~alGg~v~~~~~ 98 (189)
T PRK05670 67 REF-AGKVPILGVCLGHQAIGEAFGGKVVRAKE 98 (189)
T ss_pred HHh-cCCCCEEEECHHHHHHHHHhCCEEEecCC
Confidence 653 56799999999999999999999997654
No 20
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=99.81 E-value=7.3e-20 Score=132.38 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=70.4
Q ss_pred HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
|+||||++++.++|++.|.++.+++.....+...+. .++|+|||+|||.++.+.. ...++++++ +.++|+||||
T Consensus 6 d~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~-~~~d~iilsgGpg~p~~~~----~~~~~i~~~-~~~~PvLGIC 79 (188)
T TIGR00566 6 DNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA-LLPLLIVISPGPCTPNEAG----ISLEAIRHF-AGKLPILGVC 79 (188)
T ss_pred ECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh-cCCCEEEEcCCCCChhhcc----hhHHHHHHh-ccCCCEEEEC
Confidence 357799999999999999998877743211111111 2589999999999885432 235667776 5789999999
Q ss_pred hHHHHHHHHhCCccccCCc
Q 033165 100 FGHQVRAITVFSSHINASK 118 (126)
Q Consensus 100 ~G~Q~la~~~Gg~v~~~~~ 118 (126)
+|||+|+.++||++.+.++
T Consensus 80 ~G~Qll~~~~GG~v~~~~~ 98 (188)
T TIGR00566 80 LGHQAMGQAFGGDVVRANT 98 (188)
T ss_pred HHHHHHHHHcCCEEeeCCC
Confidence 9999999999999997653
No 21
>CHL00101 trpG anthranilate synthase component 2
Probab=99.80 E-value=7.7e-20 Score=132.39 Aligned_cols=92 Identities=16% Similarity=0.162 Sum_probs=69.0
Q ss_pred hhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 21 KYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 21 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
++++|++++.++|++.|.++.+++....+.... ...++|+|||+|||.++.+.. ...+++ +.++.++|+||||+
T Consensus 7 ~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~-~~~~~dgiiisgGpg~~~~~~----~~~~i~-~~~~~~~PiLGICl 80 (190)
T CHL00101 7 NYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKI-KNLNIRHIIISPGPGHPRDSG----ISLDVI-SSYAPYIPILGVCL 80 (190)
T ss_pred CCCchHHHHHHHHHhcCCCEEEEECCCCCHHHH-hhCCCCEEEECCCCCChHHCc----chHHHH-HHhcCCCcEEEEch
Confidence 456899999999999999998887543221111 124699999999998875432 122333 34567999999999
Q ss_pred HHHHHHHHhCCccccCCc
Q 033165 101 GHQVRAITVFSSHINASK 118 (126)
Q Consensus 101 G~Q~la~~~Gg~v~~~~~ 118 (126)
|||+|+.++||+|.+.++
T Consensus 81 G~Qlla~~~Gg~V~~~~~ 98 (190)
T CHL00101 81 GHQSIGYLFGGKIIKAPK 98 (190)
T ss_pred hHHHHHHHhCCEEEECCC
Confidence 999999999999998654
No 22
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=99.80 E-value=2.6e-19 Score=128.65 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=71.2
Q ss_pred HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 20 KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 20 ~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
+++++|+.++.++|++.|.++++++..... +.+.++.++||||++||+.++.++. ..+.+++.+++++|+||||
T Consensus 5 ~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~-~~~~~~~~~dgvil~gG~~~~~~~~-----~~~~i~~~~~~~~PvlGIC 78 (184)
T cd01743 5 DNYDSFTYNLVQYLRELGAEVVVVRNDEIT-LEELELLNPDAIVISPGPGHPEDAG-----ISLEIIRALAGKVPILGVC 78 (184)
T ss_pred eCCCccHHHHHHHHHHcCCceEEEeCCCCC-HHHHhhcCCCEEEECCCCCCcccch-----hHHHHHHHHhcCCCEEEEC
Confidence 356789999999999999999999875432 1111457899999999998875542 2233444456789999999
Q ss_pred hHHHHHHHHhCCccccCC
Q 033165 100 FGHQVRAITVFSSHINAS 117 (126)
Q Consensus 100 ~G~Q~la~~~Gg~v~~~~ 117 (126)
+|||+|++++||++.+.+
T Consensus 79 ~G~Qlla~~~Gg~v~~~~ 96 (184)
T cd01743 79 LGHQAIAEAFGGKVVRAP 96 (184)
T ss_pred HhHHHHHHHhCCEEEeCC
Confidence 999999999999999765
No 23
>PLN02335 anthranilate synthase
Probab=99.78 E-value=9.1e-19 Score=129.74 Aligned_cols=98 Identities=11% Similarity=0.166 Sum_probs=73.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
+||+|+++ +++|++++.++|++.|.++++++....+.... ...++|+|||+|||+++++... ..+
T Consensus 19 ~~ilviD~----------~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~-~~~~~d~iVisgGPg~p~d~~~----~~~ 83 (222)
T PLN02335 19 GPIIVIDN----------YDSFTYNLCQYMGELGCHFEVYRNDELTVEEL-KRKNPRGVLISPGPGTPQDSGI----SLQ 83 (222)
T ss_pred CcEEEEEC----------CCCHHHHHHHHHHHCCCcEEEEECCCCCHHHH-HhcCCCEEEEcCCCCChhhccc----hHH
Confidence 57788744 56899999999999999999998532111111 1236899999999999976432 123
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
.+++ ...++|+||||+|||+|+.++||++.+.+
T Consensus 84 ~~~~-~~~~~PiLGIClG~QlLa~alGg~v~~~~ 116 (222)
T PLN02335 84 TVLE-LGPLVPLFGVCMGLQCIGEAFGGKIVRSP 116 (222)
T ss_pred HHHH-hCCCCCEEEecHHHHHHHHHhCCEEEeCC
Confidence 3333 34579999999999999999999998764
No 24
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.76 E-value=3.5e-18 Score=122.13 Aligned_cols=91 Identities=19% Similarity=0.249 Sum_probs=68.3
Q ss_pred CHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 24 GYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 24 ~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
+|+..+.++|++.|.++.+++..... + ..++.++|+||++||+.+++++. +|. .+++.+.++|+||||+||
T Consensus 9 ~~~~~~~~~l~~~G~~~~~~~~~~~~-~-~~~~~~~dgvIl~Gg~~~~~~~~~~~~------~~~~~~~~~PilGIC~G~ 80 (181)
T cd01742 9 QYTHLIARRVRELGVYSEILPNTTPL-E-EIKLKNPKGIILSGGPSSVYEEDAPRV------DPEIFELGVPVLGICYGM 80 (181)
T ss_pred chHHHHHHHHHhcCceEEEecCCCCh-h-hhcccCCCEEEECCCcccccccccchh------hHHHHhcCCCEEEEcHHH
Confidence 46778899999999999888764321 1 12568899999999998877642 332 234445699999999999
Q ss_pred HHHHHHhCCccccCC-ccccc
Q 033165 103 QVRAITVFSSHINAS-KIAGT 122 (126)
Q Consensus 103 Q~la~~~Gg~v~~~~-~~~g~ 122 (126)
|+|++++||++.+.+ ..+|+
T Consensus 81 Qll~~~~gg~v~~~~~~~~G~ 101 (181)
T cd01742 81 QLIAKALGGKVERGDKREYGK 101 (181)
T ss_pred HHHHHhcCCeEEeCCCCcceE
Confidence 999999999998754 34443
No 25
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.76 E-value=2.6e-18 Score=125.21 Aligned_cols=97 Identities=26% Similarity=0.278 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
|||+||-....+. +|...+.++++..|.+++++.+.. + +++.+||+|||+||+.+++++..|...+.+
T Consensus 1 ~~i~vl~~~~~~~-------e~~~~~~~~l~~~g~~~~~~~~~~---~--~~l~~~d~iii~GG~~~~~~~~~~~~~~~~ 68 (200)
T PRK13527 1 MKIGVLALQGDVE-------EHIDALKRALDELGIDGEVVEVRR---P--GDLPDCDALIIPGGESTTIGRLMKREGILD 68 (200)
T ss_pred CEEEEEEECCccH-------HHHHHHHHHHHhcCCCeEEEEeCC---h--HHhccCCEEEECCCcHHHHHHHHhhccHHH
Confidence 3777777666543 466778899999999888887642 2 256789999999998766544456666788
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHhCCc
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITVFSS 112 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~ 112 (126)
+|+++++.++|+||||+|+|+|++++|++
T Consensus 69 ~i~~~~~~~~pilGIC~G~Qll~~~~gg~ 97 (200)
T PRK13527 69 EIKEKIEEGLPILGTCAGLILLAKEVGDD 97 (200)
T ss_pred HHHHHHHCCCeEEEECHHHHHHHhhhcCC
Confidence 99999889999999999999999999984
No 26
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.75 E-value=5.8e-18 Score=138.88 Aligned_cols=99 Identities=15% Similarity=0.138 Sum_probs=74.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCCC--CCcCEEEEcCCCCCCCCCchH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDDF--GSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~~--~~~d~iii~G~~~~~~~~~~~ 77 (126)
|+||+|++ +||+|++++.++|++.|.++.+++.. .|. .+++ .++|+|||+|||.++.|. .+
T Consensus 1 ~~~iLiID----------n~dsft~nl~~~lr~~g~~v~V~~~~---~~~~~~~~~l~~~~~~~IIlSpGPg~p~d~-~~ 66 (531)
T PRK09522 1 MADILLLD----------NIDSFTYNLADQLRSNGHNVVIYRNH---IPAQTLIERLATMSNPVLMLSPGPGVPSEA-GC 66 (531)
T ss_pred CCeEEEEe----------CCChHHHHHHHHHHHCCCCEEEEECC---CCCccCHHHHHhcCcCEEEEcCCCCChhhC-CC
Confidence 46899995 46789999999999999999988732 221 1122 357899999999998653 22
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCcc
Q 033165 78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKI 119 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~~ 119 (126)
.. ++++. ++.++|+||||+|||+|+.++||+|.+.+++
T Consensus 67 ~~---~i~~~-~~~~iPILGIClG~QlLa~a~GG~V~~~~~~ 104 (531)
T PRK09522 67 MP---ELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQAGEI 104 (531)
T ss_pred CH---HHHHH-HhcCCCEEEEcHHHHHHHHhcCCEEEeCCce
Confidence 22 22332 3458999999999999999999999976544
No 27
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=99.75 E-value=8e-18 Score=121.34 Aligned_cols=93 Identities=20% Similarity=0.239 Sum_probs=71.2
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCC--cCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGS--YDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~--~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
|+|++++. +|+.++.++|++.|.++++++.... + +++.+ +|+|||+||+.+++++. ..+
T Consensus 1 i~iiD~g~----------~~~~~l~~~l~~~g~~~~~~~~~~~--~--~~~~~~~~~glii~Gg~~~~~~~~-----~~~ 61 (188)
T TIGR00888 1 ILVLDFGS----------QYTQLIARRLRELGVYSELVPNTTP--L--EEIREKNPKGIILSGGPSSVYAEN-----APR 61 (188)
T ss_pred CEEEECCc----------hHHHHHHHHHHHcCCEEEEEeCCCC--H--HHHhhcCCCEEEECCCCCCcCcCC-----chH
Confidence 45666654 4788899999999999988876432 1 12333 55999999998887643 234
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
+++.+++.++|+||||+|||+|+.++||++.+.+
T Consensus 62 ~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~ 95 (188)
T TIGR00888 62 ADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAE 95 (188)
T ss_pred HHHHHHhCCCCEEEECHHHHHHHHhcCceEecCC
Confidence 5677778899999999999999999999998654
No 28
>PRK00758 GMP synthase subunit A; Validated
Probab=99.75 E-value=6.6e-18 Score=121.42 Aligned_cols=90 Identities=22% Similarity=0.303 Sum_probs=68.3
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCc-CEEEEcCCCCCCCCCchHHHHHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSY-DGYVITGSCNDAHGNDVWICKLIAL 84 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~-d~iii~G~~~~~~~~~~~~~~~~~~ 84 (126)
|+|+++.. +|++++.++|++.|.++.+++... + ++++.++ |+||++||+. .+|...+.++
T Consensus 2 i~iid~~~----------~~~~~i~~~l~~~g~~~~~~~~~~---~-~~~l~~~~dgivi~Gg~~-----~~~~~~~~~~ 62 (184)
T PRK00758 2 IVVVDNGG----------QYNHLIHRTLRYLGVDAKIIPNTT---P-VEEIKAFEDGLILSGGPD-----IERAGNCPEY 62 (184)
T ss_pred EEEEECCC----------chHHHHHHHHHHcCCcEEEEECCC---C-HHHHhhcCCEEEECCCCC-----hhhccccHHH
Confidence 77776544 578899999999999988877432 2 1246677 9999999982 2344444455
Q ss_pred HHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 85 LKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 85 i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
++ +.++|+||||+|||+|++++||++.+.+
T Consensus 63 l~---~~~~PilGIC~G~Q~L~~a~Gg~v~~~~ 92 (184)
T PRK00758 63 LK---ELDVPILGICLGHQLIAKAFGGEVGRGE 92 (184)
T ss_pred HH---hCCCCEEEEeHHHHHHHHhcCcEEecCC
Confidence 54 4589999999999999999999998764
No 29
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.74 E-value=8.1e-18 Score=144.02 Aligned_cols=104 Identities=17% Similarity=0.175 Sum_probs=76.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCCCCCCCC----CCCCcCEEEEcCCCCCCCCCchHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARGEFPDDD----DFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~p~~~----~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
+||++| ||||||++++.++|++. |.++.+++.++-.+.... .+..+|+|||+|||.++.. ...+
T Consensus 82 ~~iLlI----------DnyDSfTyNL~~~L~~~~g~~~~Vv~nd~~~~~~~~~~~~~~~~~d~IVlSPGPG~P~~-~~d~ 150 (918)
T PLN02889 82 VRTLLI----------DNYDSYTYNIYQELSIVNGVPPVVVRNDEWTWEEVYHYLYEEKAFDNIVISPGPGSPTC-PADI 150 (918)
T ss_pred ceEEEE----------eCCCchHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHhhhhcccCCCEEEECCCCCCccc-hHHH
Confidence 578888 46899999999999887 888888775421111110 1357999999999987743 2223
Q ss_pred HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCccc
Q 033165 79 CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIA 120 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~~~ 120 (126)
....++|++. .++||||||+|||+|+.++||+|.+++++.
T Consensus 151 Gi~~~~i~~~--~~iPILGICLGhQ~i~~~~Gg~V~~~~~~~ 190 (918)
T PLN02889 151 GICLRLLLEC--RDIPILGVCLGHQALGYVHGARIVHAPEPV 190 (918)
T ss_pred HHHHHHHHHh--CCCcEEEEcHHHHHHHHhcCceEEeCCCce
Confidence 3345556543 479999999999999999999999876543
No 30
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.72 E-value=4.1e-17 Score=116.91 Aligned_cols=84 Identities=19% Similarity=0.229 Sum_probs=65.7
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHH
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAI 107 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~ 107 (126)
++.+++++.|..+.+++.... ... ....++|+||++||+.++.+ .....++++++.+.++|+||||+|+|+|+.
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~~-~~~-~~~~~~dgiil~GG~~~~~~----~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~ 84 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNTD-AEE-ILKLDPDGIFLSNGPGDPAL----LDEAIKTVRKLLGKKIPIFGICLGHQLLAL 84 (178)
T ss_pred HHHHHHHHCCCeEEEEECCCC-HHH-HhhcCCCEEEECCCCCChhH----hHHHHHHHHHHHhCCCCEEEECHHHHHHHH
Confidence 468889899999998876432 111 12357999999999876533 245677889988889999999999999999
Q ss_pred HhCCccccCC
Q 033165 108 TVFSSHINAS 117 (126)
Q Consensus 108 ~~Gg~v~~~~ 117 (126)
++||++.+.+
T Consensus 85 ~~Gg~v~~~~ 94 (178)
T cd01744 85 ALGAKTYKMK 94 (178)
T ss_pred HcCCceecCC
Confidence 9999998643
No 31
>PLN02347 GMP synthetase
Probab=99.71 E-value=6.7e-17 Score=132.68 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=78.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCC-chHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGN-DVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~-~~~~~~ 80 (126)
.||+||+++. +|++++.+.+++.|..++++..... .+++. ++||||+||||.+++++ .+|+..
T Consensus 11 ~~IlIID~G~----------~~t~~I~r~lrelgv~~~v~p~~~~----~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~ 76 (536)
T PLN02347 11 DVVLILDYGS----------QYTHLITRRVRELGVYSLLLSGTAS----LDRIASLNPRVVILSGGPHSVHVEGAPTVPE 76 (536)
T ss_pred CEEEEEECCC----------cHHHHHHHHHHHCCCeEEEEECCCC----HHHHhcCCCCEEEECCCCCcccccCCchhhH
Confidence 4799998766 4788899999999998887764321 12232 68999999999998764 355543
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-cccccc
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGTA 123 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~~ 123 (126)
.+++.+.+.++|+||||+|||+|++++||+|.+.+ ..+|+.
T Consensus 77 --~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~~~e~G~~ 118 (536)
T PLN02347 77 --GFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGEKQEYGRM 118 (536)
T ss_pred --HHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecCCcccceE
Confidence 34444455789999999999999999999998754 346653
No 32
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.71 E-value=6.4e-17 Score=137.00 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=71.5
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-C--CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-G--ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g--~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~ 77 (126)
+.++||+||++ ||+|++++.++|++. + .++.+++...........+..||+|||+|||+++.+.. .
T Consensus 3 ~~~~~iL~ID~----------~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l~~~D~VVIspGPG~p~~~~-~ 71 (742)
T TIGR01823 3 QQRLHVLFIDS----------YDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELLPLFDAIVVGPGPGNPNNAQ-D 71 (742)
T ss_pred CCCceEEEEeC----------CcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhhcCCCEEEECCCCCCccchh-h
Confidence 34689999955 668999999999875 3 45666664321110111356899999999999875422 1
Q ss_pred HHHHHHHHHHHHh----cCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 78 ICKLIALLKQLDS----LRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 78 ~~~~~~~i~~~~~----~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
..+++++.+ .++|+||||+|||+|+.++||++.+.+
T Consensus 72 ----~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~ 111 (742)
T TIGR01823 72 ----MGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLP 111 (742)
T ss_pred ----hHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECC
Confidence 122333332 359999999999999999999999865
No 33
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.70 E-value=4.2e-16 Score=119.96 Aligned_cols=112 Identities=18% Similarity=0.244 Sum_probs=81.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe--EEEEEccCCCC---C---------CCC--CCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET--WDVFHVARGEF---P---------DDD--DFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~~---p---------~~~--~~~~~d~iii~G 66 (126)
.+||+||+..+....++. .|.++|.....+ ++.+++..-.. + ..+ .-.+|||+||+|
T Consensus 35 pl~i~ilNlMp~k~~TE~-------q~~rll~~~~~qv~v~~~~~~~h~~~~~~~~hl~~~y~~~~~i~~~~~DG~IITG 107 (302)
T PRK05368 35 PLKILILNLMPKKIETET-------QFLRLLGNTPLQVDIHLLRIDSHESKNTPAEHLENFYCTFEDIKDEKFDGLIITG 107 (302)
T ss_pred CccEEEEeCCCCCchHHH-------HHHHHhcCCCceEEEEEEecCCcCCCCCCHHHHHHhccCHHHhccCCCCEEEEcC
Confidence 479999999999875544 477777665445 45554432100 0 000 126899999999
Q ss_pred CCCC--CCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCc--cccCCcccc
Q 033165 67 SCND--AHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSS--HINASKIAG 121 (126)
Q Consensus 67 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~--v~~~~~~~g 121 (126)
+|.+ ++++.+|..++.++++.+.+..+|+||||||||+++.++||. ....+|.+|
T Consensus 108 Ap~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~G 166 (302)
T PRK05368 108 APVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSG 166 (302)
T ss_pred CCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeE
Confidence 9988 788888777777777777777899999999999999999994 444567777
No 34
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.69 E-value=8.2e-17 Score=116.59 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=70.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
||||+|+..... |.+++ ++|+..|.++..++. + +++++||+||++||+.+.++...|...+.
T Consensus 1 ~m~~~i~~~~g~----------~~~~~-~~l~~~g~~~~~~~~-----~--~~l~~~dgiii~GG~~~~~~~~~~~~~~~ 62 (189)
T PRK13525 1 MMKIGVLALQGA----------VREHL-AALEALGAEAVEVRR-----P--EDLDEIDGLILPGGESTTMGKLLRDFGLL 62 (189)
T ss_pred CCEEEEEEcccC----------HHHHH-HHHHHCCCEEEEeCC-----h--hHhccCCEEEECCCChHHHHHHHHhccHH
Confidence 468888877654 33333 567778887776652 2 35778999999999876554445566677
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFS 111 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg 111 (126)
++++++.++++|++|||+|+|+|++++|+
T Consensus 63 ~~i~~~~~~g~PilGIC~G~QlL~~~~gg 91 (189)
T PRK13525 63 EPLREFIASGLPVFGTCAGMILLAKEIEG 91 (189)
T ss_pred HHHHHHHHCCCeEEEECHHHHHHHhhccc
Confidence 88999999999999999999999999998
No 35
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.69 E-value=1.6e-16 Score=134.07 Aligned_cols=97 Identities=11% Similarity=0.114 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EFPDDDDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
.+||+|++++. +|.+++.++|++.|.++++++.... +++ +..++|+|||+|||+++.+. .+
T Consensus 516 ~~~IlVID~gd----------s~~~~l~~~L~~~G~~v~vv~~~~~~~~~---~~~~~DgLILsgGPGsp~d~-----~~ 577 (717)
T TIGR01815 516 GRRILLVDHED----------SFVHTLANYLRQTGASVTTLRHSHAEAAF---DERRPDLVVLSPGPGRPADF-----DV 577 (717)
T ss_pred CCEEEEEECCC----------hhHHHHHHHHHHCCCeEEEEECCCChhhh---hhcCCCEEEEcCCCCCchhc-----cc
Confidence 57999998864 4677899999999999988875422 122 23579999999999987652 24
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
.++|+++++.++|+||||+|||+|++++||++.+.+
T Consensus 578 ~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~ 613 (717)
T TIGR01815 578 AGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLP 613 (717)
T ss_pred HHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECC
Confidence 567778888899999999999999999999998764
No 36
>PRK13566 anthranilate synthase; Provisional
Probab=99.68 E-value=2.2e-16 Score=133.33 Aligned_cols=97 Identities=12% Similarity=0.123 Sum_probs=78.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EFPDDDDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
.+||+|++++. +|.+.+.++|++.|.++.+++.... +.+ +..++|+|||+|||.++.+. .+
T Consensus 526 g~~IlvID~~d----------sf~~~l~~~Lr~~G~~v~vv~~~~~~~~~---~~~~~DgVVLsgGpgsp~d~-----~~ 587 (720)
T PRK13566 526 GKRVLLVDHED----------SFVHTLANYFRQTGAEVTTVRYGFAEEML---DRVNPDLVVLSPGPGRPSDF-----DC 587 (720)
T ss_pred CCEEEEEECCC----------chHHHHHHHHHHCCCEEEEEECCCChhHh---hhcCCCEEEECCCCCChhhC-----Cc
Confidence 37999999874 4677899999999999999987532 122 23579999999999876442 35
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
.++++.++++++|+||||+|||+|+.++||++.+.+
T Consensus 588 ~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~ 623 (720)
T PRK13566 588 KATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLA 623 (720)
T ss_pred HHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECC
Confidence 678888888999999999999999999999998754
No 37
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.68 E-value=9.3e-17 Score=116.19 Aligned_cols=108 Identities=17% Similarity=0.138 Sum_probs=72.9
Q ss_pred EEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCC---C--chH----
Q 033165 8 VLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHG---N--DVW---- 77 (126)
Q Consensus 8 Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~---~--~~~---- 77 (126)
|..+........+.+++++..+.++|+..|....++..... ... ...+..+|+||++||+....+ + .+|
T Consensus 3 i~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~iv~~~~~-~~~~~~~l~~~dglvl~GG~~~~~~~~~~~~~~~~~~~ 81 (189)
T cd01745 3 ITARLREEEGGYERRDYLNQYYVDAVRKAGGLPVLLPPVDD-EEDLEQYLELLDGLLLTGGGDVDPPLYGEEPHPELGPI 81 (189)
T ss_pred EcCccccccCccHHHHHHHHHHHHHHHHCCCEEEEeCCCCC-hHHHHHHHhhCCEEEECCCCCCChhhcCCCCCcccCCC
Confidence 33343333333333567888899999999988777653321 100 113478999999999864321 0 011
Q ss_pred ----HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165 78 ----ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA 116 (126)
Q Consensus 78 ----~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~ 116 (126)
.....++++.+.+.++|+||||+|+|+|+.++||++.+.
T Consensus 82 ~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~ 124 (189)
T cd01745 82 DPERDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQD 124 (189)
T ss_pred ChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcC
Confidence 123467888888889999999999999999999999764
No 38
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.68 E-value=1.7e-16 Score=129.81 Aligned_cols=102 Identities=19% Similarity=0.240 Sum_probs=77.2
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCCc-hH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGND-VW 77 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~~-~~ 77 (126)
|.+.+|+||+++. .|+..+.+.+++.|...+++..... .+++. ++|||||+||+.++++.. ++
T Consensus 1 ~~~~~i~vlD~Gs----------q~~~li~r~lrelg~~~~v~p~~~~----~~~l~~~~~dgIIlsGGp~sv~~~~~p~ 66 (511)
T PRK00074 1 IHHDKILILDFGS----------QYTQLIARRVRELGVYSEIVPYDIS----AEEIRAFNPKGIILSGGPASVYEEGAPR 66 (511)
T ss_pred CCCCEEEEEECCC----------CcHHHHHHHHHHCCCeEEEEECCCC----HHHHhccCCCEEEECCCCcccccCCCcc
Confidence 5677899999865 4788899999999998888864321 12333 459999999999887643 44
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165 78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT 122 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~ 122 (126)
+. +.+++.++|+||||+|||+|++++||++.+.. ...|+
T Consensus 67 ~~------~~i~~~~~PvLGIC~G~QlLa~~lGG~V~~~~~~e~G~ 106 (511)
T PRK00074 67 AD------PEIFELGVPVLGICYGMQLMAHQLGGKVERAGKREYGR 106 (511)
T ss_pred cc------HHHHhCCCCEEEECHHHHHHHHHhCCeEEecCCcccce
Confidence 32 23456799999999999999999999998764 34453
No 39
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.67 E-value=3.3e-16 Score=123.96 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
.+||+|++++. .+++.++|++.|.++.+++.... .... ...++|+|||+|||.++.+. ....
T Consensus 192 ~~~I~viD~g~------------k~ni~~~L~~~G~~v~vvp~~~~-~~~i-~~~~~dgIilSgGPg~p~~~----~~~i 253 (382)
T CHL00197 192 QLKIIVIDFGV------------KYNILRRLKSFGCSITVVPATSP-YQDI-LSYQPDGILLSNGPGDPSAI----HYGI 253 (382)
T ss_pred CCEEEEEECCc------------HHHHHHHHHHCCCeEEEEcCCCC-HHHH-hccCCCEEEEcCCCCChhHH----HHHH
Confidence 36899998843 34688899999999988864321 1111 12379999999999877432 2334
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
+.++++++.++|+||||+|||+|+.++||++.+.+
T Consensus 254 ~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~~ 288 (382)
T CHL00197 254 KTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLK 288 (382)
T ss_pred HHHHHHHhCCCCEEEEcHHHHHHHHHhCCEEeccC
Confidence 45566666789999999999999999999987643
No 40
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=99.66 E-value=1.4e-16 Score=130.93 Aligned_cols=93 Identities=15% Similarity=0.256 Sum_probs=68.7
Q ss_pred HhhCCHHHHHHHHHhhCCCe-EEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 20 KKYGGYFGVFVRMLAEEGET-WDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 20 ~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
||||+|++++.++|++.|.+ +.++++..-++... ...++|+||++|||.++.++.. ..++++.+ +.++|+|||
T Consensus 6 dn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~-~~~~~d~vIlsgGP~~p~~~~~----~~~li~~~-~~~~PvLGI 79 (534)
T PRK14607 6 DNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEI-EALNPSHIVISPGPGRPEEAGI----SVEVIRHF-SGKVPILGV 79 (534)
T ss_pred ECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHH-HhcCCCEEEECCCCCChhhCCc----cHHHHHHh-hcCCCEEEE
Confidence 45789999999999999885 66665443221111 1236899999999998865431 23455553 568999999
Q ss_pred chHHHHHHHHhCCccccCCc
Q 033165 99 CFGHQVRAITVFSSHINASK 118 (126)
Q Consensus 99 C~G~Q~la~~~Gg~v~~~~~ 118 (126)
|+|||+|+.++||++.+.++
T Consensus 80 ClG~QlLa~a~Gg~V~~~~~ 99 (534)
T PRK14607 80 CLGHQAIGYAFGGKIVHAKR 99 (534)
T ss_pred cHHHHHHHHHcCCeEecCCc
Confidence 99999999999999987653
No 41
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.65 E-value=6e-16 Score=112.83 Aligned_cols=95 Identities=16% Similarity=0.189 Sum_probs=74.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
||++||+++..+ ...+.++|++.|.++.+++. + +++++||+||++|+.. ..+..+|+..+.+
T Consensus 1 ~~~~v~~~~~~~----------~~~~~~~l~~~G~~~~~~~~-----~--~~~~~~d~iii~G~~~-~~~~~~~~~~~~~ 62 (200)
T PRK13143 1 MMIVIIDYGVGN----------LRSVSKALERAGAEVVITSD-----P--EEILDADGIVLPGVGA-FGAAMENLSPLRD 62 (200)
T ss_pred CeEEEEECCCcc----------HHHHHHHHHHCCCeEEEECC-----H--HHHccCCEEEECCCCC-HHHHHHHHHHHHH
Confidence 699999998764 34578899999998887641 2 2467899999998632 1123478888889
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHH------------hCCccccC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAIT------------VFSSHINA 116 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~------------~Gg~v~~~ 116 (126)
.+++++++++|+||||+|+|+|+++ +|+++.+.
T Consensus 63 ~i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~ 107 (200)
T PRK13143 63 VILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRF 107 (200)
T ss_pred HHHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEc
Confidence 9999999999999999999999986 67777653
No 42
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.64 E-value=1.4e-15 Score=113.66 Aligned_cols=103 Identities=15% Similarity=0.214 Sum_probs=76.0
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
||+++--. .+..++|+++.+.+.++..+.+.++.+..+....... .+.+.++||||++||+.... ....
T Consensus 2 ~i~lvg~~---~~~~day~s~~~~L~~a~~~~~~~v~~~~i~~~~~~~~~~~~~l~~~dgivl~GG~~~~~-----~~~~ 73 (235)
T cd01746 2 RIALVGKY---VELPDAYLSVLEALKHAGIALGVKLEIKWIDSEDLEEENAEEALKGADGILVPGGFGIRG-----VEGK 73 (235)
T ss_pred EEEEEECC---cCCHHHHHHHHHHHHHHHHHcCCeeEEEEeChhhcCccchhhhhccCCEEEECCCCCCcc-----hhhH
Confidence 56666332 3566789999999998887777777766544221111 13578899999999985432 2345
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHhCCcccc
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHIN 115 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~ 115 (126)
.++++.+.+.++|+||||+|+|+|+.++|+++.+
T Consensus 74 ~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~ 107 (235)
T cd01746 74 ILAIKYARENNIPFLGICLGMQLAVIEFARNVLG 107 (235)
T ss_pred HHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcC
Confidence 6678888889999999999999999999998864
No 43
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.64 E-value=9.4e-16 Score=120.69 Aligned_cols=96 Identities=20% Similarity=0.251 Sum_probs=72.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
+||+|++++.. .++.++|.+.|..+.++..... ...... .++|||||+|||.++.+ .....+
T Consensus 178 ~~I~viD~G~k------------~nivr~L~~~G~~v~vvp~~~~-~~~i~~-~~~DGIvLSgGPgdp~~----~~~~~~ 239 (360)
T PRK12564 178 YKVVAIDFGVK------------RNILRELAERGCRVTVVPATTT-AEEILA-LNPDGVFLSNGPGDPAA----LDYAIE 239 (360)
T ss_pred CEEEEEeCCcH------------HHHHHHHHHCCCEEEEEeCCCC-HHHHHh-cCCCEEEEeCCCCChHH----HHHHHH
Confidence 68999998643 3477888889999988875421 111111 26999999999976633 245667
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
+++++.+.++|+||||+|||+|+.++||++.+.+
T Consensus 240 ~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~ 273 (360)
T PRK12564 240 MIRELLEKKIPIFGICLGHQLLALALGAKTYKMK 273 (360)
T ss_pred HHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccC
Confidence 8888888899999999999999999999988653
No 44
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.62 E-value=8.2e-16 Score=111.03 Aligned_cols=88 Identities=19% Similarity=0.218 Sum_probs=66.4
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIAL 84 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~ 84 (126)
||+|+..+.... . ..++|++.|.++.+++. + ++++++|++|||||+.+..+...|...+.+.
T Consensus 1 ~igvl~~qg~~~----------e-~~~~l~~~g~~~~~v~~-----~--~~l~~~d~liipGG~~~~~~~l~~~~~l~~~ 62 (184)
T TIGR03800 1 KIGVLALQGAVR----------E-HARALEALGVEGVEVKR-----P--EQLDEIDGLIIPGGESTTLSRLLDKYGMFEP 62 (184)
T ss_pred CEEEEEccCCHH----------H-HHHHHHHCCCEEEEECC-----h--HHhccCCEEEECCCCHHHHHHHHHhccHHHH
Confidence 577777766543 2 23678889988887763 2 2467899999999976543333455567777
Q ss_pred HHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 85 LKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 85 i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
|+++++.++|++|||+|+|+|++++.
T Consensus 63 i~~~~~~g~pilGIC~G~qlL~~~~~ 88 (184)
T TIGR03800 63 LRNFILSGLPVFGTCAGLIMLAKEII 88 (184)
T ss_pred HHHHHHcCCcEEEECHHHHHHHhhhc
Confidence 88888899999999999999999983
No 45
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.62 E-value=2.2e-15 Score=118.39 Aligned_cols=96 Identities=24% Similarity=0.330 Sum_probs=70.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
.+||++++++ +..++.++|.+.|.++.+++.... .+.. ...++|+|||+|||.++.+.. ...
T Consensus 167 ~~~V~viD~G------------~k~ni~~~L~~~G~~v~vvp~~~~-~~~i-~~~~~DGIiLsgGPgdp~~~~----~~~ 228 (354)
T PRK12838 167 GKHVALIDFG------------YKKSILRSLSKRGCKVTVLPYDTS-LEEI-KNLNPDGIVLSNGPGDPKELQ----PYL 228 (354)
T ss_pred CCEEEEECCC------------HHHHHHHHHHHCCCeEEEEECCCC-HHHH-hhcCCCEEEEcCCCCChHHhH----HHH
Confidence 3688898874 234678888889999998875421 1111 113799999999998775432 234
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
++++++++. +|+||||+|||+|+.++||++.+.+
T Consensus 229 ~~i~~~~~~-~PvlGIClG~QlLa~a~Gg~v~kl~ 262 (354)
T PRK12838 229 PEIKKLISS-YPILGICLGHQLIALALGADTEKLP 262 (354)
T ss_pred HHHHHHhcC-CCEEEECHHHHHHHHHhCCEEecCC
Confidence 566776665 9999999999999999999998643
No 46
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.62 E-value=8.5e-16 Score=111.59 Aligned_cols=94 Identities=18% Similarity=0.185 Sum_probs=70.6
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCC--chHHHHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGN--DVWICKLIA 83 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~--~~~~~~~~~ 83 (126)
|+|++++.. +...+.++|++.|.++++++.. ++++++|+||++|+.... +. ..|...+.+
T Consensus 1 i~i~d~g~~----------~~~~~~~~l~~~g~~v~v~~~~-------~~l~~~d~iiipG~~~~~-~~~~~~~~~~~~~ 62 (198)
T cd01748 1 IAIIDYGMG----------NLRSVANALERLGAEVIITSDP-------EEILSADKLILPGVGAFG-DAMANLRERGLIE 62 (198)
T ss_pred CEEEeCCCC----------hHHHHHHHHHHCCCeEEEEcCh-------HHhccCCEEEECCCCcHH-HHHHHHHHcChHH
Confidence 467777664 4566889999999999887721 246789999998864321 11 124445678
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHH------------hCCccccCC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAIT------------VFSSHINAS 117 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~------------~Gg~v~~~~ 117 (126)
+++++.++++|+||||+|+|+|+++ +++++.+.+
T Consensus 63 ~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~ 108 (198)
T cd01748 63 ALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFP 108 (198)
T ss_pred HHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECC
Confidence 8998888899999999999999998 778888754
No 47
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.62 E-value=1e-15 Score=112.42 Aligned_cols=98 Identities=19% Similarity=0.170 Sum_probs=67.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK-- 80 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~-- 80 (126)
||||+|++++..+- ..+.++|++.|.++++.... . | ++++++|+|||||+.... ++..++..
T Consensus 1 ~~~~~iid~g~gn~----------~s~~~al~~~g~~~~v~~~~-~--~--~~l~~~d~lIlpG~~~~~-~~~~~l~~~~ 64 (209)
T PRK13146 1 MMTVAIIDYGSGNL----------RSAAKALERAGAGADVVVTA-D--P--DAVAAADRVVLPGVGAFA-DCMRGLRAVG 64 (209)
T ss_pred CCeEEEEECCCChH----------HHHHHHHHHcCCCccEEEEC-C--H--HHhcCCCEEEECCCCcHH-HHHHHHHHCC
Confidence 57999999988753 23567888888844333221 1 2 357899999999985432 11222222
Q ss_pred -HHHHHHHHHhcCCcEEEEchHHHHHHHH------------hCCccccC
Q 033165 81 -LIALLKQLDSLRKKVLGICFGHQVRAIT------------VFSSHINA 116 (126)
Q Consensus 81 -~~~~i~~~~~~~~PvlGIC~G~Q~la~~------------~Gg~v~~~ 116 (126)
..++++.+.+.++|+||||+|+|+|+++ +++++.+.
T Consensus 65 ~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~ 113 (209)
T PRK13146 65 LGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRF 113 (209)
T ss_pred cHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEc
Confidence 2344555556799999999999999999 88888764
No 48
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.61 E-value=2.1e-15 Score=118.62 Aligned_cols=92 Identities=20% Similarity=0.310 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
.||+|++++.. +++.++|.+.|.++.++.... .++ ++ ..+|||||+|||.++.+ ....
T Consensus 174 ~~i~viD~G~k------------~ni~~~L~~~G~~v~vvp~~~-~~~---~i~~~~pDGIiLSgGPgdp~~----~~~~ 233 (358)
T TIGR01368 174 KRVVVIDFGVK------------QNILRRLVKRGCEVTVVPYDT-DAE---EIKKYNPDGIFLSNGPGDPAA----VEPA 233 (358)
T ss_pred cEEEEEeCCcH------------HHHHHHHHHCCCEEEEEcCCC-CHH---HHHhhCCCEEEECCCCCCHHH----HHHH
Confidence 58999988654 347788888999998876432 111 22 24699999999976532 3456
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA 116 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~ 116 (126)
.++++++++ ++|+||||+|||+|+.++||++.+.
T Consensus 234 i~~i~~~~~-~~PILGIClG~QlLa~a~Gg~v~kl 267 (358)
T TIGR01368 234 IETIRKLLE-KIPIFGICLGHQLLALAFGAKTYKM 267 (358)
T ss_pred HHHHHHHHc-CCCEEEECHHHHHHHHHhCCceecc
Confidence 677888776 8999999999999999999988763
No 49
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.60 E-value=3.1e-15 Score=119.14 Aligned_cols=94 Identities=19% Similarity=0.209 Sum_probs=68.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-CCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-DFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
.||++++++.. .++.+.|.+.|.+++++.... +..+ ...++|||||+|||.++.+ .++ ..
T Consensus 241 ~~IvviD~G~K------------~nIlr~L~~~G~~v~VvP~~~---~~~ei~~~~pDGIiLSnGPGDP~~-~~~---~i 301 (415)
T PLN02771 241 YHVIAYDFGIK------------HNILRRLASYGCKITVVPSTW---PASEALKMKPDGVLFSNGPGDPSA-VPY---AV 301 (415)
T ss_pred CEEEEECCChH------------HHHHHHHHHcCCeEEEECCCC---CHHHHhhcCCCEEEEcCCCCChhH-hhH---HH
Confidence 47888877663 357888989999998886432 1111 1136999999999987733 232 34
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
+.++++. .++|+||||+|||+|+.++||++.+.+
T Consensus 302 e~ik~l~-~~iPIlGICLGhQlLa~AlGGkv~K~~ 335 (415)
T PLN02771 302 ETVKELL-GKVPVFGICMGHQLLGQALGGKTFKMK 335 (415)
T ss_pred HHHHHHH-hCCCEEEEcHHHHHHHHhcCCeEEECC
Confidence 4555554 479999999999999999999998754
No 50
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.59 E-value=2.6e-15 Score=109.67 Aligned_cols=95 Identities=17% Similarity=0.168 Sum_probs=70.6
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc--hHHHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND--VWICKLI 82 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~--~~~~~~~ 82 (126)
+|+||+.+.. +...+.+.|++.|.++++++. + +++.+||+|||+||.... ++. .|...+.
T Consensus 1 ~i~~~d~~~~----------~~~~i~~~l~~~G~~v~~~~~-----~--~~l~~~d~iiipG~~~~~-~~~~~~~~~~~~ 62 (205)
T PRK13141 1 MIAIIDYGMG----------NLRSVEKALERLGAEAVITSD-----P--EEILAADGVILPGVGAFP-DAMANLRERGLD 62 (205)
T ss_pred CEEEEEcCCc----------hHHHHHHHHHHCCCeEEEECC-----H--HHhccCCEEEECCCCchH-HHHHHHHHcChH
Confidence 4788888765 345688999999999988651 1 256789999999974321 111 1333567
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHH------------hCCccccCC
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAIT------------VFSSHINAS 117 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~------------~Gg~v~~~~ 117 (126)
++|+++.+.++|+||||+|+|+|+++ +++++.+.+
T Consensus 63 ~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~ 109 (205)
T PRK13141 63 EVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFP 109 (205)
T ss_pred HHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcC
Confidence 88888888899999999999999997 667777653
No 51
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.58 E-value=7e-15 Score=114.23 Aligned_cols=94 Identities=21% Similarity=0.326 Sum_probs=73.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
..+|++++++-.. ++.+.|.++|++++++..... + +++ .++|||+|+-||.++.. .+.
T Consensus 179 ~~~Vv~iD~GvK~------------nIlr~L~~rg~~vtVVP~~t~--~--eeIl~~~pDGiflSNGPGDP~~----~~~ 238 (368)
T COG0505 179 GKHVVVIDFGVKR------------NILRELVKRGCRVTVVPADTS--A--EEILALNPDGIFLSNGPGDPAP----LDY 238 (368)
T ss_pred CcEEEEEEcCccH------------HHHHHHHHCCCeEEEEcCCCC--H--HHHHhhCCCEEEEeCCCCChhH----HHH
Confidence 4689999998873 366777889999999875421 1 122 58999999999988732 455
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA 116 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~ 116 (126)
..+.++++++..+|++|||+|||+|+.|+|++..+-
T Consensus 239 ~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~Km 274 (368)
T COG0505 239 AIETIKELLGTKIPIFGICLGHQLLALALGAKTYKM 274 (368)
T ss_pred HHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeec
Confidence 667788888888899999999999999999987753
No 52
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=99.58 E-value=5.4e-15 Score=111.57 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=48.6
Q ss_pred CCCcCEEEEcCCCCCCC----C---C----chHH-HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165 56 FGSYDGYVITGSCNDAH----G---N----DVWI-CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA 116 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~----~---~----~~~~-~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~ 116 (126)
++.+||||++||+.++. . . .+|. ..+.++++.+++.++|+||||+|||+|+.++||++.+.
T Consensus 59 l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~ 131 (254)
T PRK11366 59 LPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRK 131 (254)
T ss_pred HHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeec
Confidence 46799999999986652 1 1 1232 23568899999999999999999999999999999864
No 53
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.56 E-value=5.1e-15 Score=106.62 Aligned_cols=74 Identities=24% Similarity=0.302 Sum_probs=61.3
Q ss_pred HHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 31 RMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 31 ~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
++|++.+.++..++.. ++++++|+||++||+....+...|...+.++|+++.+.++|+||||+|+|+|++++|
T Consensus 15 ~~l~~~g~~v~~v~~~-------~~l~~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~ 87 (183)
T cd01749 15 RALERLGVEVIEVRTP-------EDLEGIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVE 87 (183)
T ss_pred HHHHHCCCeEEEECCH-------HHhccCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhc
Confidence 6778889888887742 246789999999998766554456666778899999999999999999999999999
Q ss_pred C
Q 033165 111 S 111 (126)
Q Consensus 111 g 111 (126)
+
T Consensus 88 ~ 88 (183)
T cd01749 88 D 88 (183)
T ss_pred c
Confidence 8
No 54
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.55 E-value=1.2e-14 Score=105.78 Aligned_cols=94 Identities=18% Similarity=0.173 Sum_probs=67.9
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH--HHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI--CKLIA 83 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~~~ 83 (126)
|+|++.+..+- +.+.++|+..|.++++++ + + +++.++|+||+||+.... +...+. ..+.+
T Consensus 2 i~vid~g~gn~----------~~~~~~l~~~g~~v~~~~---~--~--~~l~~~d~lilpG~g~~~-~~~~~l~~~~~~~ 63 (199)
T PRK13181 2 IAIIDYGAGNL----------RSVANALKRLGVEAVVSS---D--P--EEIAGADKVILPGVGAFG-QAMRSLRESGLDE 63 (199)
T ss_pred EEEEeCCCChH----------HHHHHHHHHCCCcEEEEc---C--h--HHhccCCEEEECCCCCHH-HHHHHHHHCChHH
Confidence 88998877642 346678888898887764 1 2 256789999999975321 111222 23567
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHH-----------hCCccccCC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAIT-----------VFSSHINAS 117 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~-----------~Gg~v~~~~ 117 (126)
.++++.+.++|+||||+|+|+|+.+ +++++.+.+
T Consensus 64 ~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~ 108 (199)
T PRK13181 64 ALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFR 108 (199)
T ss_pred HHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcC
Confidence 7888788899999999999999999 678887643
No 55
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.55 E-value=2e-14 Score=104.55 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=61.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
|||+|++++..+ .+.+.++|++.|.++++++ + + +++.++|+||+||+.... +...++.+ ..
T Consensus 1 m~i~iid~g~gn----------~~s~~~~l~~~g~~~~~v~---~--~--~~~~~~d~iIlPG~G~~~-~~~~~l~~-~~ 61 (196)
T PRK13170 1 MNVVIIDTGCAN----------LSSVKFAIERLGYEPVVSR---D--P--DVILAADKLFLPGVGTAQ-AAMDQLRE-RE 61 (196)
T ss_pred CeEEEEeCCCch----------HHHHHHHHHHCCCeEEEEC---C--H--HHhCCCCEEEECCCCchH-HHHHHHHH-cC
Confidence 689999988763 3456778888898888876 1 1 246779999998864332 22233322 23
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
+++.+.+.++|+||||+|||+|+++++
T Consensus 62 l~~~i~~~~~PilGIClG~Qll~~~~~ 88 (196)
T PRK13170 62 LIDLIKACTQPVLGICLGMQLLGERSE 88 (196)
T ss_pred hHHHHHHcCCCEEEECHHHHHHhhhcc
Confidence 444455568999999999999999983
No 56
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.55 E-value=9.9e-14 Score=105.13 Aligned_cols=98 Identities=19% Similarity=0.242 Sum_probs=69.1
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC-CCC--chH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA-HGN--DVW 77 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~-~~~--~~~ 77 (126)
|.++||+||.....+.+. + ..++|++.|.++.++.+.... .....+++||+|+|+||.... +.. ..|
T Consensus 1 ~~~~kvaVl~~pG~n~d~-e--------~~~Al~~aG~~v~~v~~~~~~-~~~~~l~~~DgLvipGGfs~gD~l~~g~~~ 70 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED-E--------TVKAFRRLGVEPEYVHINDLA-AERKSVSDYDCLVIPGGFSAGDYIRAGAIF 70 (261)
T ss_pred CCCCEEEEEeCCCCCCHH-H--------HHHHHHHCCCcEEEEeecccc-ccccchhhCCEEEECCCCCcccccccchhh
Confidence 788999999997776432 1 357888899998888764311 112357899999999995321 111 122
Q ss_pred HHH----HHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 78 ICK----LIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 78 ~~~----~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
... +.+.|++++++++|+||||.|+|+|+++
T Consensus 71 ~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~ 105 (261)
T PRK01175 71 AARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVEL 105 (261)
T ss_pred HHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHC
Confidence 222 3477888889999999999999999983
No 57
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.53 E-value=4.4e-14 Score=104.00 Aligned_cols=91 Identities=14% Similarity=0.148 Sum_probs=64.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHH--H
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWIC--K 80 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~--~ 80 (126)
|+||+||+.+..+- .-+.++|+..|.++.+++. + +++.++|+||+||+.. +.....++. .
T Consensus 1 ~~~v~iid~~~GN~----------~sl~~al~~~g~~v~vv~~-----~--~~l~~~d~iIlPG~g~-~~~~~~~l~~~g 62 (210)
T CHL00188 1 MMKIGIIDYSMGNL----------HSVSRAIQQAGQQPCIINS-----E--SELAQVHALVLPGVGS-FDLAMKKLEKKG 62 (210)
T ss_pred CcEEEEEEcCCccH----------HHHHHHHHHcCCcEEEEcC-----H--HHhhhCCEEEECCCCc-hHHHHHHHHHCC
Confidence 56899999986642 2366788888998887752 1 2467799999988533 211223333 2
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFS 111 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg 111 (126)
+.+.|++.++.++|+||||+|||+|++..++
T Consensus 63 l~~~i~~~~~~~~pvlGIClG~Qll~~~~~~ 93 (210)
T CHL00188 63 LITPIKKWIAEGNPFIGICLGLHLLFETSEE 93 (210)
T ss_pred HHHHHHHHHHcCCCEEEECHHHHHHhhcccc
Confidence 4466777778899999999999999997554
No 58
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.52 E-value=3.6e-14 Score=103.19 Aligned_cols=93 Identities=18% Similarity=0.206 Sum_probs=67.0
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--HHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--LIA 83 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--~~~ 83 (126)
|+|++++.. +...+.++|+..|.++++++. + ++++++|+||++|+.. ..+..+|+.. ...
T Consensus 1 ~~~~~~~~g----------n~~~l~~~l~~~g~~v~v~~~-----~--~~l~~~d~lii~G~~~-~~~~~~~l~~~~~~~ 62 (196)
T TIGR01855 1 IVIIDYGVG----------NLGSVKRALKRVGAEPVVVKD-----S--KEAELADKLILPGVGA-FGAAMARLRENGLDL 62 (196)
T ss_pred CEEEecCCc----------HHHHHHHHHHHCCCcEEEEcC-----H--HHhccCCEEEECCCCC-HHHHHHHHHHcCcHH
Confidence 467777665 345678889999999888872 1 2457899999988532 2122345444 234
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHH------------hCCccccC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAIT------------VFSSHINA 116 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~------------~Gg~v~~~ 116 (126)
+++++.+.++|+||||+|+|+|+++ +|+++.+.
T Consensus 63 l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~ 107 (196)
T TIGR01855 63 FVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKL 107 (196)
T ss_pred HHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEEC
Confidence 5577888899999999999999999 67888765
No 59
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.50 E-value=8.9e-14 Score=100.99 Aligned_cols=86 Identities=21% Similarity=0.256 Sum_probs=64.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHH--
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWIC-- 79 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~-- 79 (126)
|++|+|++++..+- + ...++|++.|.++.+.+ + | +.+.++|+||+||-.. +.+. .-++
T Consensus 1 m~~i~IIDyg~GNL--~--------Sv~~Aler~G~~~~vs~---d--~--~~i~~AD~liLPGVGa--f~~am~~L~~~ 61 (204)
T COG0118 1 MMMVAIIDYGSGNL--R--------SVKKALERLGAEVVVSR---D--P--EEILKADKLILPGVGA--FGAAMANLRER 61 (204)
T ss_pred CCEEEEEEcCcchH--H--------HHHHHHHHcCCeeEEec---C--H--HHHhhCCEEEecCCCC--HHHHHHHHHhc
Confidence 68999999998853 2 25688999998887754 2 3 3578999999999742 3322 2222
Q ss_pred HHHHHHHHHHhcCCcEEEEchHHHHHHH
Q 033165 80 KLIALLKQLDSLRKKVLGICFGHQVRAI 107 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~ 107 (126)
.+.+.|++.++.++|+||||+|||+|.+
T Consensus 62 gl~~~i~~~~~~~kP~LGIClGMQlLfe 89 (204)
T COG0118 62 GLIEAIKEAVESGKPFLGICLGMQLLFE 89 (204)
T ss_pred chHHHHHHHHhcCCCEEEEeHhHHhhhh
Confidence 3567788877788999999999999987
No 60
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.47 E-value=6.8e-14 Score=105.19 Aligned_cols=89 Identities=18% Similarity=0.158 Sum_probs=63.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
||||+||..+..... . .++|++.|.++.+++. + +++.++|+||||||.............+.
T Consensus 1 ~m~igVLa~qG~~~e----------~-~~aL~~lG~ev~~v~~-----~--~~L~~~DgLILPGGfs~~~~~L~~~~gl~ 62 (248)
T PLN02832 1 MMAIGVLALQGSFNE----------H-IAALRRLGVEAVEVRK-----P--EQLEGVSGLIIPGGESTTMAKLAERHNLF 62 (248)
T ss_pred CcEEEEEeCCCchHH----------H-HHHHHHCCCcEEEeCC-----H--HHhccCCEEEeCCCHHHHHHHHHhhcchH
Confidence 579999988776442 2 4678888888876652 2 35778999999997543222111111356
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
+.|+++.+.++|+||||.|||+|++..
T Consensus 63 ~~I~~~v~~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 63 PALREFVKSGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred HHHHHHHHcCCCEEEEChhHHHHHHHh
Confidence 677887778999999999999999975
No 61
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=99.47 E-value=1.3e-13 Score=97.51 Aligned_cols=98 Identities=13% Similarity=0.196 Sum_probs=73.2
Q ss_pred HHHhhCCHHHHHHHHH-hhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEE
Q 033165 18 VKKKYGGYFGVFVRML-AEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVL 96 (126)
Q Consensus 18 ~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pvl 96 (126)
+.|||++|+.++.++| .+.+..+.+|+-++-..+..+ ..++++++|+.||..+.|.- -..+.++++ ...+|+|
T Consensus 23 ~IDNYDSFT~Nv~qYL~~e~g~~~~VyRNDeiTV~El~-~~NP~~LliSPGPG~P~DsG----Is~~~i~~f-~~~iP~f 96 (223)
T KOG0026|consen 23 VIDNYDSFTYNLCQYLMGELGCHFEVYRNDELTVEELK-RKNPRGLLISPGPGTPQDSG----ISLQTVLEL-GPLVPLF 96 (223)
T ss_pred EEecccchhHHHHHHhhhccCccEEEEecCcccHHHHh-hcCCCeEEecCCCCCCcccc----chHHHHHHh-CCCCcee
Confidence 3468999999999998 677999999985432223322 24799999999998886532 123445544 3579999
Q ss_pred EEchHHHHHHHHhCCccccCC-cccc
Q 033165 97 GICFGHQVRAITVFSSHINAS-KIAG 121 (126)
Q Consensus 97 GIC~G~Q~la~~~Gg~v~~~~-~~~g 121 (126)
|||.|.|-+.+++||++..+. .+++
T Consensus 97 GvCMGlQCi~e~fGGkv~~a~~~i~H 122 (223)
T KOG0026|consen 97 GVCMGLQCIGEAFGGKIVRSPFGVMH 122 (223)
T ss_pred eeehhhhhhhhhhCcEEeccCcceee
Confidence 999999999999999999876 4443
No 62
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.46 E-value=1.2e-12 Score=97.33 Aligned_cols=97 Identities=19% Similarity=0.192 Sum_probs=69.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc--hH---H
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND--VW---I 78 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~--~~---~ 78 (126)
|||+||.....+.+ .-+.+.|++.|.++.++.... ..++++|+||++||+... +.. .+ .
T Consensus 1 ~~v~Vl~~~G~n~~---------~~~~~al~~~G~~~~~i~~~~------~~l~~~d~lilpGG~~~~-d~~~~~~~~~~ 64 (227)
T TIGR01737 1 MKVAVIRFPGTNCD---------RDTVYALRLLGVDAEIVWYED------GSLPDYDGVVLPGGFSYG-DYLRAGAIAAA 64 (227)
T ss_pred CeEEEEeCCCcCcH---------HHHHHHHHHCCCeEEEEecCC------CCCCCCCEEEECCCCccc-ccccccchhcc
Confidence 48999999766432 114578888999888775321 136789999999996421 111 11 1
Q ss_pred HHHHHHHHHHHhcCCcEEEEchHHHHHHHH--hCCccccC
Q 033165 79 CKLIALLKQLDSLRKKVLGICFGHQVRAIT--VFSSHINA 116 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~--~Gg~v~~~ 116 (126)
..+.++++++.+.++|++|||.|+|+|+.+ ++|++.++
T Consensus 65 ~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n 104 (227)
T TIGR01737 65 SPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPN 104 (227)
T ss_pred hHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeec
Confidence 335678888888999999999999999996 88887764
No 63
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.45 E-value=1.4e-13 Score=104.86 Aligned_cols=84 Identities=14% Similarity=0.239 Sum_probs=63.3
Q ss_pred HHHHHHhhCCCeEEEEEccCC--CCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcC-----CcEEEEch
Q 033165 28 VFVRMLAEEGETWDVFHVARG--EFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLR-----KKVLGICF 100 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~--~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~-----~PvlGIC~ 100 (126)
.+.+++++.|..+..+.+... +++ +.++.+||||++||+.++ +..+|.+....+++.+++.+ +|+||||+
T Consensus 24 ~Yv~~l~~aG~~vvpi~~~~~~~~l~--~~l~~~dG~l~~Gg~~~~-~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiCl 100 (273)
T cd01747 24 SYVKFLESAGARVVPIWINESEEYYD--KLFKSINGILFPGGAVDI-DTSGYARTAKIIYNLALERNDAGDYFPVWGTCL 100 (273)
T ss_pred HHHHHHHHCCCeEEEEEeCCcHHHHH--HHHhhCCEEEECCCCCcC-CccccchHHHHHHHHHHHhhhcCCCCcEEEEcH
Confidence 356788889998877765421 111 126789999999998766 34567777777788877653 89999999
Q ss_pred HHHHHHHHhCCccc
Q 033165 101 GHQVRAITVFSSHI 114 (126)
Q Consensus 101 G~Q~la~~~Gg~v~ 114 (126)
|+|+|+.++||++.
T Consensus 101 G~QlL~~~~gg~~~ 114 (273)
T cd01747 101 GFELLTYLTSGETL 114 (273)
T ss_pred HHHHHHHHhCCCcc
Confidence 99999999999743
No 64
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.43 E-value=4.8e-13 Score=109.30 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
.+|+++-=-. ...+.|.|....+.++-...+.++++..+...++.. .+.+.++||||++||+.... ...
T Consensus 289 v~IalVGKY~---~l~DaY~Sv~eAL~hag~~~~~~v~i~wIdse~l~~~~~~~~L~~~DGIIlpGGfG~~~-----~~g 360 (533)
T PRK05380 289 VTIALVGKYV---ELPDAYKSVIEALKHAGIANDVKVNIKWIDSEDLEEENVAELLKGVDGILVPGGFGERG-----IEG 360 (533)
T ss_pred eEEEEEeCcc---CCcHHHHHHHHHHHHHHHHcCCeeEEEEEChhhccCcchhhHhhcCCEEEecCCCCccc-----ccc
Confidence 5677774332 344556555555555555566777777765433321 23578999999999975432 234
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
..++++.+.+.++|+||||+|||+|+.++|+++.
T Consensus 361 ~i~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~ 394 (533)
T PRK05380 361 KILAIRYARENNIPFLGICLGMQLAVIEFARNVL 394 (533)
T ss_pred HHHHHHHHHHCCCcEEEEchHHHHHHHHhccccc
Confidence 5667888888999999999999999999999983
No 65
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.43 E-value=7.8e-13 Score=96.47 Aligned_cols=85 Identities=20% Similarity=0.269 Sum_probs=58.2
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--HHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--LIA 83 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--~~~ 83 (126)
|+|++++..+ ...+.+.|++.|.++.+++ + + +++..+|+||+||+.... +...+... +.+
T Consensus 2 i~iid~g~~n----------~~~v~~~l~~~g~~~~~~~---~--~--~~l~~~d~lilPG~g~~~-~~~~~l~~~~~~~ 63 (201)
T PRK13152 2 IALIDYKAGN----------LNSVAKAFEKIGAINFIAK---N--P--KDLQKADKLLLPGVGSFK-EAMKNLKELGFIE 63 (201)
T ss_pred EEEEECCCCc----------HHHHHHHHHHCCCeEEEEC---C--H--HHHcCCCEEEECCCCchH-HHHHHHHHcCcHH
Confidence 8899988874 2346788888888777654 1 2 246789999999885421 22222221 233
Q ss_pred HHH-HHHhcCCcEEEEchHHHHHHHH
Q 033165 84 LLK-QLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 84 ~i~-~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.|+ .+++.++|+||||+|+|+|+.+
T Consensus 64 ~l~~~~~~~~~pvlGiC~G~Q~l~~~ 89 (201)
T PRK13152 64 ALKEQVLVQKKPILGICLGMQLFLER 89 (201)
T ss_pred HHHHHHHhCCCcEEEECHhHHHHhhc
Confidence 343 3457799999999999999997
No 66
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=99.42 E-value=1.9e-12 Score=92.92 Aligned_cols=109 Identities=15% Similarity=0.193 Sum_probs=76.9
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhC--CCeEEEEEccCCCCCC-C-------------CCCCCcCEEEEcCCCC
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE--GETWDVFHVARGEFPD-D-------------DDFGSYDGYVITGSCN 69 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~p~-~-------------~~~~~~d~iii~G~~~ 69 (126)
|+||+..+....++. .|.++|... ..+++.+++.....+. + ....+|||+||+|+|.
T Consensus 1 I~ilNlMp~k~~TE~-------qf~rlL~~~~~qv~v~~~~~~~h~~~~~~~~~l~~~Y~~~~~i~~~~yDGlIITGApv 73 (175)
T cd03131 1 IGILNLMPDKIQTER-------QFLRLLGNTPLQVEITFIRPSSHSSKNTPPEHVNRFYETFDDIRDAKFDGLIVTGAPV 73 (175)
T ss_pred CEEEeCCCCcHHHHH-------HHHHHHhcCCccceEEEEecCCCCCCCCCHHHHHHhccCHHHccccCCCEEEEeCCCc
Confidence 689999998876554 467777654 4456666665322211 1 1357899999999986
Q ss_pred CC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCcc-cc-CCcccc
Q 033165 70 DA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSH-IN-ASKIAG 121 (126)
Q Consensus 70 ~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v-~~-~~~~~g 121 (126)
.. +++..+.+++.+++..+.+..+|+|+||||+|+...++||.. .. .+|..|
T Consensus 74 e~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K~~G 129 (175)
T cd03131 74 EHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEKIFG 129 (175)
T ss_pred ccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCceEE
Confidence 54 344455666777777777788999999999999999999975 33 456655
No 67
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.42 E-value=1.4e-12 Score=97.51 Aligned_cols=100 Identities=20% Similarity=0.201 Sum_probs=69.3
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc----hHHHH-
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND----VWICK- 80 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~----~~~~~- 80 (126)
++||.....+.+. -+.++|++.|.++.+++..+. .....++++||+|||+||+... +.. .|..+
T Consensus 1 v~vl~~pG~n~~~---------~~~~al~~aG~~v~~v~~~~~-~~~~~~l~~~d~liipGG~~~~-d~l~~~~~~~~~~ 69 (238)
T cd01740 1 VAVLRFPGSNCDR---------DMAYAFELAGFEAEDVWHNDL-LAGRKDLDDYDGVVLPGGFSYG-DYLRAGAIAAASP 69 (238)
T ss_pred CEEEEcCCcCCHH---------HHHHHHHHcCCCEEEEeccCC-ccccCCHhhCCEEEECCCCCcc-cccccccccccCh
Confidence 3566665554321 145778889999988876431 1122246899999999997422 211 13322
Q ss_pred -HHHHHHHHHhcCCcEEEEchHHHHHHHH--hCCccccC
Q 033165 81 -LIALLKQLDSLRKKVLGICFGHQVRAIT--VFSSHINA 116 (126)
Q Consensus 81 -~~~~i~~~~~~~~PvlGIC~G~Q~la~~--~Gg~v~~~ 116 (126)
+.++++++.++++|+||||.|+|+|+++ +++++...
T Consensus 70 ~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~ 108 (238)
T cd01740 70 LLMEEVKEFAERGGLVLGICNGFQILVELGLLPGALIRN 108 (238)
T ss_pred hHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCccccccC
Confidence 6788899889999999999999999998 88877653
No 68
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.42 E-value=2.7e-13 Score=107.97 Aligned_cols=93 Identities=19% Similarity=0.223 Sum_probs=71.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCc-hHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGND-VWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~-~~~~~ 80 (126)
-+|+||+.+.. |...+.+.+++.....+++..... . ..+ ..+.||||+|||.++|.++ ||...
T Consensus 17 d~i~iLD~GaQ----------Y~~~I~RrvRel~v~se~~p~~t~---~-~~i~~~~~rgiIiSGGP~SVya~dAP~~dp 82 (552)
T KOG1622|consen 17 DTILILDFGAQ----------YGKVIDRRVRELNVQSEILPLTTP---A-KTITEYGPRGIIISGGPNSVYAEDAPSFDP 82 (552)
T ss_pred ceEEEEeccch----------hhHHHHHHHHHHhhhhhhccCCCh---h-hhhhcCCceEEEEeCCCCccccCcCCCCCh
Confidence 47899987663 677788888887777777665321 1 112 5799999999999998754 77654
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA 116 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~ 116 (126)
.+++-++|+||||+|||+|+..+||+|.+.
T Consensus 83 ------~if~~~vpvLGICYGmQ~i~~~~Gg~V~~~ 112 (552)
T KOG1622|consen 83 ------AIFELGVPVLGICYGMQLINKLNGGTVVKG 112 (552)
T ss_pred ------hHhccCCcceeehhHHHHHHHHhCCccccc
Confidence 245568999999999999999999999863
No 69
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.40 E-value=3.8e-12 Score=93.91 Aligned_cols=89 Identities=22% Similarity=0.289 Sum_probs=67.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC-CcCEEEEcCCCCCCCCCc---hHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG-SYDGYVITGSCNDAHGND---VWI 78 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~-~~d~iii~G~~~~~~~~~---~~~ 78 (126)
++|++||.-...+.+.. ...+++..|.+...++..+. .+. +||+||+|||.+ |.+. .|+
T Consensus 2 ~~kvaVi~fpGtN~d~d---------~~~A~~~aG~~~~~V~~~d~------~~~~~~d~vv~pGGFS--yGDyLr~Gai 64 (231)
T COG0047 2 RPKVAVLRFPGTNCDYD---------MAAAFERAGFEAEDVWHSDL------LLGRDFDGVVLPGGFS--YGDYLRAGAI 64 (231)
T ss_pred CceEEEEEcCCcCchHH---------HHHHHHHcCCCceEEEeeec------ccCCCccEEEEcCCCC--cccccCcchH
Confidence 68999999999886432 34677888999888775422 233 799999999964 3332 455
Q ss_pred H---HHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 79 C---KLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 79 ~---~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
. .+++-++++.+.++|+||||.|+|+|.++
T Consensus 65 aa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~ 97 (231)
T COG0047 65 AAIAPVMDEVREFAEKGKPVLGICNGFQILSEA 97 (231)
T ss_pred HhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHc
Confidence 4 46677788888999999999999999963
No 70
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.39 E-value=7.2e-12 Score=92.71 Aligned_cols=98 Identities=19% Similarity=0.217 Sum_probs=70.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHh-hCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCC----CchHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA-EEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHG----NDVWI 78 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~----~~~~~ 78 (126)
|||+||.....+.+. + +.++|+ ..|.++..+.... .+++++|+|||+||+..... .....
T Consensus 1 ~~v~Vl~~~G~n~~~-d--------~~~a~~~~~G~~~~~v~~~~------~~l~~~D~lvipGG~~~~d~l~~~~~~~~ 65 (219)
T PRK03619 1 MKVAVIVFPGSNCDR-D--------MARALRDLLGAEPEYVWHKE------TDLDGVDAVVLPGGFSYGDYLRCGAIAAF 65 (219)
T ss_pred CEEEEEecCCcChHH-H--------HHHHHHhcCCCeEEEEecCc------CCCCCCCEEEECCCCchhhhhccchhhhc
Confidence 489999998876321 1 356777 7888877665321 24678999999999642110 00112
Q ss_pred HHHHHHHHHHHhcCCcEEEEchHHHHHHHH--hCCccccC
Q 033165 79 CKLIALLKQLDSLRKKVLGICFGHQVRAIT--VFSSHINA 116 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~--~Gg~v~~~ 116 (126)
..+.++|+++.++++|++|||.|+|+|+++ +++++.+.
T Consensus 66 ~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n 105 (219)
T PRK03619 66 SPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRN 105 (219)
T ss_pred hHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEc
Confidence 446778888888999999999999999997 88887754
No 71
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.38 E-value=6e-13 Score=95.69 Aligned_cols=88 Identities=24% Similarity=0.250 Sum_probs=60.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
|+ +||+||.......+ -.++|++.|.++.+++ + | ++++++|+||+|||+............
T Consensus 1 ~~-~~igVLalqG~~~E-----------h~~al~~lG~~v~~v~---~--~--~~l~~~D~LILPGG~~t~~~~ll~~~~ 61 (179)
T PRK13526 1 MT-QKVGVLAIQGGYQK-----------HADMFKSLGVEVKLVK---F--N--NDFDSIDRLVIPGGESTTLLNLLNKHQ 61 (179)
T ss_pred CC-cEEEEEECCccHHH-----------HHHHHHHcCCcEEEEC---C--H--HHHhCCCEEEECCChHHHHHHHhhhcC
Confidence 55 79999998887543 2467778888766655 1 2 257899999999985432101111123
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+.+.|++..+ ++|++|||.|+|+|++.
T Consensus 62 l~~~Ik~~~~-~kpilGICaG~qlL~~~ 88 (179)
T PRK13526 62 IFDKLYNFCS-SKPVFGTCAGSIILSKG 88 (179)
T ss_pred cHHHHHHHHc-CCcEEEEcHHHHHHHcc
Confidence 5677777664 78999999999999983
No 72
>PRK06186 hypothetical protein; Validated
Probab=99.38 E-value=4e-12 Score=94.59 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=52.2
Q ss_pred hCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCc
Q 033165 35 EEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSS 112 (126)
Q Consensus 35 ~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~ 112 (126)
..+.++++..+...++.....+.++|||+++||... .. ++.....++.+.++++|+||||+|||++...+.-.
T Consensus 30 ~~~~~~~i~wi~s~~l~~~~~l~~~dgilvpgGfg~-rg----~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arn 102 (229)
T PRK06186 30 VLGLPVDYEWLPTPEITDPEDLAGFDGIWCVPGSPY-RN----DDGALTAIRFARENGIPFLGTCGGFQHALLEYARN 102 (229)
T ss_pred hcCCeeEEEEEchhhcCChhhHhhCCeeEeCCCCCc-cc----HhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhh
Confidence 356777777776544433235889999999999542 22 34556678888899999999999999755544443
No 73
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.36 E-value=5.2e-12 Score=103.98 Aligned_cols=89 Identities=16% Similarity=0.177 Sum_probs=66.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK-- 80 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~-- 80 (126)
++||+|++++..+- ..+.+.|++.|.++.+++. | +++.++|+||+||+.... ...+++.+
T Consensus 6 ~~~i~iiDyG~GN~----------~sl~~al~~~G~~v~~v~~-----~--~~l~~~D~lIlpG~gs~~-~~m~~L~~~g 67 (538)
T PLN02617 6 DSEVTLLDYGAGNV----------RSVRNAIRHLGFTIKDVQT-----P--EDILNADRLIFPGVGAFG-SAMDVLNNRG 67 (538)
T ss_pred CCeEEEEECCCCCH----------HHHHHHHHHCCCeEEEECC-----h--hhhccCCEEEECCCCCHH-HHHHHHHHcC
Confidence 57999999998853 2366788889988876641 2 257899999999964321 12244443
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
+.+.|+++++.++|+||||+|||+|++++
T Consensus 68 l~~~i~~~i~~g~PvLGIC~G~QlLa~~~ 96 (538)
T PLN02617 68 MAEALREYIQNDRPFLGICLGLQLLFESS 96 (538)
T ss_pred HHHHHHHHHHcCCCEEEECHHHHHHhhhh
Confidence 56778888888999999999999999974
No 74
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.36 E-value=2.9e-12 Score=93.16 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=60.7
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--HHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--LIA 83 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--~~~ 83 (126)
|+|++++..+- ..+.++|++.|.++.+++ + + +++.++|+||+||+.... +...++.+ +.+
T Consensus 2 i~iidyg~gN~----------~s~~~al~~~g~~~~~v~---~--~--~~l~~~D~lIlPG~g~~~-~~~~~L~~~gl~~ 63 (192)
T PRK13142 2 IVIVDYGLGNI----------SNVKRAIEHLGYEVVVSN---T--S--KIIDQAETIILPGVGHFK-DAMSEIKRLNLNA 63 (192)
T ss_pred EEEEEcCCccH----------HHHHHHHHHcCCCEEEEe---C--H--HHhccCCEEEECCCCCHH-HHHHHHHHCCcHH
Confidence 88999887742 236678888898888765 1 2 256789999999985422 22334443 456
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
.|++ +.++|+||||+|||+|++..
T Consensus 64 ~i~~--~~g~PvlGIClGmQlL~~~~ 87 (192)
T PRK13142 64 ILAK--NTDKKMIGICLGMQLMYEHS 87 (192)
T ss_pred HHHH--hCCCeEEEECHHHHHHhhhc
Confidence 6666 46899999999999999976
No 75
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=2.1e-12 Score=104.89 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=65.4
Q ss_pred HhhCCHHHHHHHHHhhC-CC-eEEEEEccC---CCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCc
Q 033165 20 KKYGGYFGVFVRMLAEE-GE-TWDVFHVAR---GEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKK 94 (126)
Q Consensus 20 ~~~~~~~~~~~~~l~~~-g~-~~~~~~~~~---~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~P 94 (126)
++|++|+.++.+++... +. .+.+++... +.+......-.||+||+..||.++.. ...+.-+.+++... +++|
T Consensus 21 D~YDSyTfNiy~ll~~~~~vp~V~~vh~~~~~~d~~~~l~q~~~FDaIVVgPGPG~P~~-a~d~gI~~rl~~~~--~~iP 97 (767)
T KOG1224|consen 21 DNYDSYTFNIYQLLSTINGVPPVVIVHDEWTWEDAYHYLYQDVAFDAIVVGPGPGSPMC-AADIGICLRLLLEC--RDIP 97 (767)
T ss_pred ecccchhhhHHHHHHHhcCCCcEEEEeccccCHHHHHHHhhccccceEEecCCCCCCCc-HHHHHHHHHHHHhc--CCCc
Confidence 56899999999999664 33 344444321 11111112245999999988888732 22233333444333 4799
Q ss_pred EEEEchHHHHHHHHhCCccccCCcccc
Q 033165 95 VLGICFGHQVRAITVFSSHINASKIAG 121 (126)
Q Consensus 95 vlGIC~G~Q~la~~~Gg~v~~~~~~~g 121 (126)
|||||+|+|.|+.+.|+.|..+..+.+
T Consensus 98 ilGICLGfQal~l~hGA~v~~~n~p~H 124 (767)
T KOG1224|consen 98 ILGICLGFQALGLVHGAHVVHANEPVH 124 (767)
T ss_pred eeeeehhhHhHhhhcccceecCCCccc
Confidence 999999999999999999997655443
No 76
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.35 E-value=2.6e-12 Score=95.55 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=66.2
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCC-----HHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC----
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGG-----YFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA---- 71 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~-----~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~---- 71 (126)
|+++-|+|..+...+..- ++. ....+.+....+|--.-++....+.......++..||||++|| .++
T Consensus 1 ~~kpvIGIt~~~~~~~~~---~~~~~~~~~~~~yv~ai~~aGg~pillP~~~d~~~~~~~l~~iDgliltGg-~nV~P~~ 76 (243)
T COG2071 1 MSKPVIGITADLIQEIVG---FDGNPWSYLPYDYVDAIIKAGGIPILLPALEDPEDARQYLDLIDGLILTGG-SNVDPSL 76 (243)
T ss_pred CCCCEEEEecchhccccc---cCCccHHHHHHHHHHHHHHcCCceEEecCCCCHHHHHHHHhhccEEEecCC-CcCCHHH
Confidence 777888887665542110 111 1123333333444322233321111000123578999999999 333
Q ss_pred CCCc----------hHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCcccc
Q 033165 72 HGND----------VWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHIN 115 (126)
Q Consensus 72 ~~~~----------~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~ 115 (126)
|.+. ....-...+|+.++++++|+||||.|+|+|+.++||++..
T Consensus 77 YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q 130 (243)
T COG2071 77 YGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQ 130 (243)
T ss_pred cCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeeh
Confidence 1111 1122366889999999999999999999999999998875
No 77
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.33 E-value=6.8e-12 Score=92.37 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=61.8
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH--HHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI--CKLIA 83 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~~~ 83 (126)
|+||+++..+- . .+.+.++..+.+...++ + + +++.++|+||+||+.... +...++ ..+.+
T Consensus 2 i~iidyg~gNl--~--------s~~~al~~~~~~~~~~~----~-~--~~l~~~d~iIlPG~g~~~-~~~~~l~~~gl~~ 63 (210)
T PRK14004 2 IAILDYGMGNI--H--------SCLKAVSLYTKDFVFTS----D-P--ETIENSKALILPGDGHFD-KAMENLNSTGLRS 63 (210)
T ss_pred EEEEECCCchH--H--------HHHHHHHHcCCeEEEEC----C-H--HHhccCCEEEECCCCchH-HHHHHHHHcCcHH
Confidence 89999988742 1 25677777777665543 1 2 246799999999995321 222222 23667
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
.|++.+++++|+||||+|||+|+++++
T Consensus 64 ~i~~~~~~~~pilGiC~G~Q~l~~~~~ 90 (210)
T PRK14004 64 TIDKHVESGKPLFGICIGFQILFESSE 90 (210)
T ss_pred HHHHHHHcCCCEEEECHhHHHHHHhcc
Confidence 788888889999999999999999875
No 78
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.32 E-value=1.2e-11 Score=105.46 Aligned_cols=92 Identities=22% Similarity=0.369 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
+.||+.++|+-.. +..+.|...|++++++... +|.. + .+||||+++.||.++.--.. +.
T Consensus 172 ~~~I~aiDcG~K~------------N~IRcL~~RGa~vtVvPw~---~~i~-~-~~yDGlflSNGPGdPe~~~~----~v 230 (1435)
T KOG0370|consen 172 SLRILAIDCGLKY------------NQIRCLVKRGAEVTVVPWD---YPIA-K-EEYDGLFLSNGPGDPELCPL----LV 230 (1435)
T ss_pred ccEEEEcccCchH------------HHHHHHHHhCceEEEecCC---cccc-c-cccceEEEeCCCCCchhhHH----HH
Confidence 4689999998764 3567788899999998743 2321 2 48999999999988743223 33
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCcccc
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHIN 115 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~ 115 (126)
+-++++++.++|++|||+|||+||.+.|++..+
T Consensus 231 ~~vr~lL~~~~PvfGIClGHQllA~AaGakT~K 263 (1435)
T KOG0370|consen 231 QNVRELLESNVPVFGICLGHQLLALAAGAKTYK 263 (1435)
T ss_pred HHHHHHHhCCCCeEEEehhhHHHHHhhCCceEE
Confidence 445555555799999999999999999998764
No 79
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.30 E-value=6.7e-12 Score=102.59 Aligned_cols=100 Identities=16% Similarity=0.279 Sum_probs=64.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC----eEEEEEccCCCCCC--CCCCCCcCEEEEcCCCCCCCCCchH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE----TWDVFHVARGEFPD--DDDFGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~----~~~~~~~~~~~~p~--~~~~~~~d~iii~G~~~~~~~~~~~ 77 (126)
.+|+++---.. ..+. |. .+.++|..++. .+.+..+...++.. .+.+.++|||+++||+.+...
T Consensus 290 v~IalVGKY~~---~~da---Y~-SI~eAL~~ag~~~~~~V~~~~i~se~i~~~~~~~L~~~dGIiLpGG~G~~~~---- 358 (525)
T TIGR00337 290 VTIGIVGKYVE---LKDS---YL-SVIEALKHAGAKLDTKVNIKWIDSEDLEEEGAEFLKGVDGILVPGGFGERGV---- 358 (525)
T ss_pred cEEEEEeCCcC---CHHH---HH-HHHHHHHhCccccCCEEEEEEecHHHhhhhhhhhhcCCCEEEeCCCCCChhh----
Confidence 57777744333 3333 43 24456666665 44444443222211 123678999999999865432
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCcccc
Q 033165 78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHIN 115 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~ 115 (126)
....+.++.+.+.++|+||||+|||+++.++|.++..
T Consensus 359 -~g~i~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~g 395 (525)
T TIGR00337 359 -EGKILAIKYARENNIPFLGICLGMQLAVIEFARNVLG 395 (525)
T ss_pred -cChHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcC
Confidence 2344567777788999999999999999999998765
No 80
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=99.30 E-value=9.5e-12 Score=90.37 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=58.3
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH--HHHHHHHHHHHhcCCcEEEEchHHHHHH
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI--CKLIALLKQLDSLRKKVLGICFGHQVRA 106 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~~~~i~~~~~~~~PvlGIC~G~Q~la 106 (126)
+.++++..|.+++++++.. ++.++|+|||+||... ..+..|. ..+.+.|+++.++++|++|||.|+|+|+
T Consensus 15 l~~~~~~~G~~~~~~~~~~-------~~~~~d~lilpGg~~~-~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~ 86 (194)
T cd01750 15 LDPLAREPGVDVRYVEVPE-------GLGDADLIILPGSKDT-IQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLG 86 (194)
T ss_pred HHHHHhcCCceEEEEeCCC-------CCCCCCEEEECCCcch-HHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhh
Confidence 5677788899999888532 2567999999999732 2334553 3477888888889999999999999999
Q ss_pred HHhCC
Q 033165 107 ITVFS 111 (126)
Q Consensus 107 ~~~Gg 111 (126)
+.+..
T Consensus 87 ~~~~~ 91 (194)
T cd01750 87 KYIVD 91 (194)
T ss_pred hhccC
Confidence 98844
No 81
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.26 E-value=1.5e-12 Score=96.12 Aligned_cols=88 Identities=20% Similarity=0.292 Sum_probs=51.9
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC----CCC-----chHHHH-----HHHHHHHHHhcCC
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA----HGN-----DVWICK-----LIALLKQLDSLRK 93 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~----~~~-----~~~~~~-----~~~~i~~~~~~~~ 93 (126)
.+.++++..|...-.+.+..+.-....-++..||||+|||..+. |.+ ..+... ..++++.+.++++
T Consensus 28 ~Yv~~i~~aG~~pv~ip~~~~~~~~~~~l~~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~ 107 (217)
T PF07722_consen 28 SYVKAIEAAGGRPVPIPYDADDEELDELLDRIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGK 107 (217)
T ss_dssp HHHHHHHHTT-EEEEE-SS--HHHHHHHHHCSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT-
T ss_pred HHHHHHHHcCCEEEEEccCCCHHHHHHHHhhcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCC
Confidence 35677788888777776542110001135789999999998533 111 112222 3355667777899
Q ss_pred cEEEEchHHHHHHHHhCCcccc
Q 033165 94 KVLGICFGHQVRAITVFSSHIN 115 (126)
Q Consensus 94 PvlGIC~G~Q~la~~~Gg~v~~ 115 (126)
|+||||.|||+|+.++||++..
T Consensus 108 PilGICrG~Q~lnv~~GGtl~q 129 (217)
T PF07722_consen 108 PILGICRGMQLLNVAFGGTLYQ 129 (217)
T ss_dssp -EEEETHHHHHHHHHCCSSEES
T ss_pred CEEEEcHHHHHHHHHhCCCcee
Confidence 9999999999999999998864
No 82
>PLN02327 CTP synthase
Probab=99.22 E-value=6.4e-11 Score=97.26 Aligned_cols=103 Identities=18% Similarity=0.204 Sum_probs=63.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-------------CCCCCcCEEEEcCCCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-------------DDFGSYDGYVITGSCND 70 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-------------~~~~~~d~iii~G~~~~ 70 (126)
.||+++-=-. ...+.|-|-..-|.++-...+.++++..+...++... +.+.++|||++|||+.+
T Consensus 298 v~IalVGKY~---~l~DAY~Si~eAL~hA~~~~~~~v~i~wI~se~l~~~~~~~~~~~y~~~~~~L~~~DGIvvpGGfG~ 374 (557)
T PLN02327 298 VRIAMVGKYT---GLSDSYLSVLKALLHASVACSRKLVIDWVAASDLEDETAKETPDAYAAAWKLLKGADGILVPGGFGD 374 (557)
T ss_pred eEEEEEeccc---CCcHhHHHHHHHHHHHHHHcCCeeEEEEEchhhcCCcccccccchhhhhHHhhccCCEEEeCCCCCC
Confidence 5677774222 2223332222222222234567777776654333211 23788999999999754
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165 71 AHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 71 ~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
... ......++.+.+.++|+||||+|||+++..++..+-
T Consensus 375 ~~~-----~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvl 413 (557)
T PLN02327 375 RGV-----EGKILAAKYARENKVPYLGICLGMQIAVIEFARSVL 413 (557)
T ss_pred ccc-----ccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhc
Confidence 311 223445667777899999999999999999988654
No 83
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=99.21 E-value=5.4e-11 Score=86.72 Aligned_cols=77 Identities=12% Similarity=0.194 Sum_probs=55.6
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH---HHHHHHHHHHHhcCCcEEEEchH
Q 033165 25 YFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI---CKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~---~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
|.+++ +.|++.|.++.++++..+ +.+.++|+||||||..... ..++ ..+.+.|+++.++++|++|||.|
T Consensus 13 y~e~~-~~l~~~G~~v~~~s~~~~-----~~l~~~D~lilPGG~~~~~--~~~L~~~~~~~~~i~~~~~~g~pilgICgG 84 (198)
T cd03130 13 YPENL-ELLEAAGAELVPFSPLKD-----EELPDADGLYLGGGYPELF--AEELSANQSMRESIRAFAESGGPIYAECGG 84 (198)
T ss_pred cHHHH-HHHHHCCCEEEEECCCCC-----CCCCCCCEEEECCCchHHH--HHHHHhhHHHHHHHHHHHHcCCCEEEEccc
Confidence 44444 567788998888764321 2345699999999843221 2333 23677888888889999999999
Q ss_pred HHHHHHHh
Q 033165 102 HQVRAITV 109 (126)
Q Consensus 102 ~Q~la~~~ 109 (126)
+|+|++.+
T Consensus 85 ~qlL~~~~ 92 (198)
T cd03130 85 LMYLGESL 92 (198)
T ss_pred HHHHHHHh
Confidence 99999977
No 84
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.03 E-value=7.4e-10 Score=83.97 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=61.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc----hHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND----VWI 78 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~----~~~ 78 (126)
++|++|+.....+.+.. ...+|+..|.+.+.++..+- ......+++||+|+++||.+-- |.. -|.
T Consensus 1 kpkV~Vl~~pGtNce~e---------~~~A~~~aG~~~~~v~~~dl-~~~~~~l~~~~~lvipGGFS~g-D~l~sg~~~a 69 (259)
T PF13507_consen 1 KPKVAVLRFPGTNCERE---------TAAAFENAGFEPEIVHINDL-LSGESDLDDFDGLVIPGGFSYG-DYLRSGAIAA 69 (259)
T ss_dssp --EEEEEE-TTEEEHHH---------HHHHHHCTT-EEEEEECCHH-HTTS--GCC-SEEEE-EE-GGG-GTTSTTHHHH
T ss_pred CCEEEEEECCCCCCHHH---------HHHHHHHcCCCceEEEEEec-ccccCchhhCcEEEECCccCcc-ccchHHHHHH
Confidence 46999999988875422 46788899999988875321 1222368999999999996422 221 243
Q ss_pred HH------HHHHHHHHHhc-CCcEEEEchHHHHHHHH
Q 033165 79 CK------LIALLKQLDSL-RKKVLGICFGHQVRAIT 108 (126)
Q Consensus 79 ~~------~~~~i~~~~~~-~~PvlGIC~G~Q~la~~ 108 (126)
.. +.+.|++++++ ++++||||.|+|+|.+.
T Consensus 70 ~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~ 106 (259)
T PF13507_consen 70 ARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVEL 106 (259)
T ss_dssp HHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCC
T ss_pred HHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHh
Confidence 32 46778888888 99999999999999884
No 85
>PRK00784 cobyric acid synthase; Provisional
Probab=99.02 E-value=1.3e-09 Score=89.02 Aligned_cols=88 Identities=20% Similarity=0.257 Sum_probs=64.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK-- 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~-- 80 (126)
.||+|+..+.-.. | +++ +.|++ .|.++..+++. +.+.++|+|+|+||....+ ...|..+
T Consensus 252 ~~i~v~~~~~a~~--------f-~nl-~~l~~~~g~~v~~~s~~-------~~l~~~d~lilpGg~~~~~-~~~~~~~~~ 313 (488)
T PRK00784 252 LRIAVIRLPRISN--------F-TDF-DPLRAEPGVDVRYVRPG-------EPLPDADLVILPGSKNTIA-DLAWLRESG 313 (488)
T ss_pred eEEEEEeCCCcCC--------c-cCh-HHHhhcCCCeEEEECCc-------cccccCCEEEECCccchHH-HHHHHHHcC
Confidence 5899998665432 2 234 34554 89888887642 1456899999999974433 2356655
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
+.+.|+++.++++|++|||.|+|+|++.+
T Consensus 314 l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 314 WDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred HHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 67888888889999999999999999987
No 86
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=98.98 E-value=7e-09 Score=76.79 Aligned_cols=105 Identities=17% Similarity=0.136 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-----------CC------------------C
Q 033165 3 GKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-----------FP------------------D 52 (126)
Q Consensus 3 ~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----------~p------------------~ 52 (126)
|+||+|+-.+...- ..++ -++... .+.|++.|++++++.+.... .+ .
T Consensus 1 ~kkVlills~~~~~dG~e~--~E~~~P-~~~L~~aG~~V~~aSp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (217)
T PRK11780 1 MKKIAVILSGCGVYDGSEI--HEAVLT-LLALDRAGAEAVCFAPDIPQLHVINHLTGEEMGETRNVLVESARIARGEIKD 77 (217)
T ss_pred CCEEEEEEccCCCCCCEeh--hHHHHH-HHHHHHCCCEEEEEeCCCCccccccCccccccccccceeeehhhhhccCCCc
Confidence 36899998732110 0000 012222 36778899999888764211 01 0
Q ss_pred --CCCCCCcCEEEEcCCCCCCC---C------CchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 53 --DDDFGSYDGYVITGSCNDAH---G------NDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 53 --~~~~~~~d~iii~G~~~~~~---~------~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
..+.++||+|+||||..... + .....+.+.++++++.++++|+.+||.|.++|+.++|
T Consensus 78 l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~~ 146 (217)
T PRK11780 78 LAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKILG 146 (217)
T ss_pred hhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHhc
Confidence 01246899999999954321 1 1122356888999999999999999999999999873
No 87
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.95 E-value=5.1e-09 Score=84.68 Aligned_cols=94 Identities=19% Similarity=0.330 Sum_probs=57.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh----CCCeEEEEEccCCCCCCC--CCCCC-cCEEEEcCCCCCCCCCch
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE----EGETWDVFHVARGEFPDD--DDFGS-YDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~----~g~~~~~~~~~~~~~p~~--~~~~~-~d~iii~G~~~~~~~~~~ 76 (126)
.||+++---.. ..| +|...+ .+|.. .+.++++..+...++... +.+.. +|||++|||...- .
T Consensus 289 v~IalVGKYv~---l~D---aY~Sv~-EAL~hag~~~~~~v~i~wIdse~le~~~~~~~~~~~dgIlVPGGFG~R-G--- 357 (533)
T COG0504 289 VTIALVGKYVE---LPD---AYKSVI-EALKHAGIALGVKVNIKWIDSEDLEEENAAELEKLVDGILVPGGFGYR-G--- 357 (533)
T ss_pred eEEEEEECCcC---chh---HHHHHH-HHHHhhhhhcCCceeeEEEccccccccchhhhhhcCCEEEeCCCCCcC-c---
Confidence 45777744333 222 444444 34444 355666666654444321 12333 9999999997521 2
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 77 WICKLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
++.-...++.+.++++|+||||+|||+....+
T Consensus 358 -~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~ 389 (533)
T COG0504 358 -VEGKIAAIRYARENNIPFLGICLGMQLAVIEF 389 (533)
T ss_pred -hHHHHHHHHHHHhcCCCEEEEchhHHHHHHHH
Confidence 23445567888889999999999999986543
No 88
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.93 E-value=2.6e-09 Score=87.04 Aligned_cols=81 Identities=15% Similarity=0.250 Sum_probs=51.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
|||+||..... .+.++..+. +++++.... | +++.++|+||||||.... ...+...+.
T Consensus 1 m~iGvlal~sv---------------~~al~~lg~~~~~vv~~~~---~--~~l~~~D~lILPGG~~~~--~~~l~~~l~ 58 (476)
T PRK06278 1 MEIGLLDIKGS---------------LPCFENFGNLPTKIIDENN---I--KEIKDLDGLIIPGGSLVE--SGSLTDELK 58 (476)
T ss_pred CEEEEEehhhH---------------HHHHHHhcCCCcEEEEeCC---h--HHhccCCEEEECCCchhh--cchHHHHHH
Confidence 48999976553 233544554 556655321 2 367899999999985321 111233344
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
+.+++. ++|+||||.|+|+|++..
T Consensus 59 ~~i~~~---g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 59 KEILNF---DGYIIGICSGFQILSEKI 82 (476)
T ss_pred HHHHHc---CCeEEEEcHHHHhccccc
Confidence 444443 899999999999999875
No 89
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=98.89 E-value=5e-09 Score=77.05 Aligned_cols=96 Identities=17% Similarity=0.078 Sum_probs=70.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
..||+++-+.... +.+|..++.++|++. |.+++.+....+ +. .+.+..+|+|+++|| +......++.+
T Consensus 31 ~~~i~~IptAs~~------~~~~~~~~~~a~~~l~G~~~~~~~~~~~--~~~~~~l~~ad~I~l~GG--~~~~~~~~l~~ 100 (212)
T cd03146 31 RPKVLFVPTASGD------RDEYTARFYAAFESLRGVEVSHLHLFDT--EDPLDALLEADVIYVGGG--NTFNLLAQWRE 100 (212)
T ss_pred CCeEEEECCCCCC------HHHHHHHHHHHHhhccCcEEEEEeccCc--ccHHHHHhcCCEEEECCc--hHHHHHHHHHH
Confidence 4688999776663 235778889999999 998887765431 22 236789999999997 33222233332
Q ss_pred --HHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 81 --LIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 81 --~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+.+.|+++.++++|++|+|.|+|+++..
T Consensus 101 ~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 101 HGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred cCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 5677888788899999999999999985
No 90
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=98.88 E-value=2.5e-08 Score=62.98 Aligned_cols=77 Identities=30% Similarity=0.462 Sum_probs=56.1
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHH
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVR 105 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~l 105 (126)
.+.+.++..+.+++++.......+..+...++|+++++|+....... ++.....+++++..+.++|++|+|.|+|++
T Consensus 16 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lii~g~~~~~~~~-~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDL-ARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHCCCeEEEEcCCCCceeccCChhccCEEEECCCCCchhhh-ccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 35577778888888887654322212346799999999997654322 133567778888888899999999999999
No 91
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=98.85 E-value=1.1e-08 Score=78.81 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=66.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEE--EEEccCCCC--CCC----------C--CCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWD--VFHVARGEF--PDD----------D--DFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--~~~~~~~~~--p~~----------~--~~~~~d~iii~G 66 (126)
.+||+||+..+.....+. .|.++|.....+++ .+.+..-.. ... + .-..|||+||+|
T Consensus 34 pL~I~IlNLMP~K~~TE~-------Q~lrlL~~tplqv~v~f~~~~sh~~k~t~~~~l~~~Y~~~~~i~~~~~DglIITG 106 (298)
T PF04204_consen 34 PLKIGILNLMPDKEETER-------QFLRLLSNTPLQVEVTFLYPASHKSKNTSPEHLEKFYKTFDEIKDRKFDGLIITG 106 (298)
T ss_dssp -EEEEEE---SSHHHHHH-------HHHHHCCSSSS-EEEEEE--S-----SS-HHHHHHHEE-HHHCTTS-EEEEEE--
T ss_pred ceEEEEEecccchHHHHH-------HHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHhhhCHHHHhhCCCCEEEEeC
Confidence 379999999999765543 46777776665554 443321100 000 1 235899999999
Q ss_pred CCCCC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHH-HHHHhCCcccc-CCcccc
Q 033165 67 SCNDA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQV-RAITVFSSHIN-ASKIAG 121 (126)
Q Consensus 67 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~-la~~~Gg~v~~-~~~~~g 121 (126)
.|-.. +++.++..++.+++..+.+...+.|.||||+|+ |...+|-+-.. .+|++|
T Consensus 107 APvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~KlfG 165 (298)
T PF04204_consen 107 APVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPEKLFG 165 (298)
T ss_dssp -TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEEEEEE
T ss_pred CCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCCccee
Confidence 98543 455577788888888887788999999999999 66666765443 456665
No 92
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.85 E-value=1.6e-08 Score=81.92 Aligned_cols=94 Identities=15% Similarity=0.166 Sum_probs=64.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH--HHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI--CKL 81 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~ 81 (126)
.||+|+.-..-+ + .|.+.+ +.|++.|.++..+++..+ +++.++|+|+|+||....++. .+. ..+
T Consensus 246 ~~iava~d~af~------f-~y~e~~-~~L~~~g~~~~~~~~~~~-----~~l~~~D~lilpGG~~~~~~~-~l~~~~~~ 311 (451)
T PRK01077 246 VRIAVARDAAFN------F-YYPENL-ELLRAAGAELVFFSPLAD-----EALPDCDGLYLGGGYPELFAA-ELAANTSM 311 (451)
T ss_pred ceEEEEecCccc------c-cHHHHH-HHHHHCCCEEEEeCCcCC-----CCCCCCCEEEeCCCchhhHHH-HHhhCchh
Confidence 488888754221 1 244445 456788888887765322 235689999999996432221 122 235
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITVFS 111 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg 111 (126)
.+.|+++.+.++|++|||-|+|+|++.+-.
T Consensus 312 ~~~i~~~~~~g~~i~aiCgG~~~L~~~i~d 341 (451)
T PRK01077 312 RASIRAAAAAGKPIYAECGGLMYLGESLED 341 (451)
T ss_pred HHHHHHHHHcCCCEEEEcHHHHHHHhhhcC
Confidence 678888888999999999999999998843
No 93
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.81 E-value=1.8e-08 Score=81.60 Aligned_cols=92 Identities=14% Similarity=0.117 Sum_probs=62.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH--HHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI--CKL 81 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~--~~~ 81 (126)
.||+|+.-..- ++ -|.+++ +.|++.|.++..+++..+ +++.++|+|+|+||....+.. .|. ..+
T Consensus 245 ~~Iava~d~af------nF-y~~~~~-~~L~~~g~~~~~~~~~~d-----~~l~~~d~l~ipGG~~~~~~~-~l~~~~~~ 310 (449)
T TIGR00379 245 VRIAVAQDQAF------NF-YYQDNL-DALTHNAAELVPFSPLED-----TELPDVDAVYIGGGFPELFAE-ELSQNQAL 310 (449)
T ss_pred cEEEEEechhh------ce-eHHHHH-HHHHHCCCEEEEECCccC-----CCCCCCCEEEeCCcHHHHHHH-HHHhhhHH
Confidence 47888875321 11 123444 457778888887765322 235589999999996433221 232 236
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
.+.|+++.+++.|++|+|-|+|+|++.+
T Consensus 311 ~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 311 RDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred HHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 6778888889999999999999999988
No 94
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=98.80 E-value=6.6e-08 Score=85.93 Aligned_cols=95 Identities=13% Similarity=0.197 Sum_probs=67.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC---------CCCCCcCEEEEcCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD---------DDFGSYDGYVITGSCNDAHG 73 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~---------~~~~~~d~iii~G~~~~~~~ 73 (126)
++|++|+.....+.+.. ...+|++.|++...++..+- .... ..+.++++|+++||.+-- |
T Consensus 977 kpkvaIl~~pGtNce~d---------~a~Af~~aG~~~~~v~~~dl-~~~~i~~s~~~~~~~l~~~~~l~~pGGFSyG-D 1045 (1239)
T TIGR01857 977 KPRVVIPVFPGTNSEYD---------SAKAFEKEGAEVNLVIFRNL-NEEALVESVETMVDEIDKSQILMLPGGFSAG-D 1045 (1239)
T ss_pred CCeEEEEECCCCCCHHH---------HHHHHHHcCCceEEEEEecC-cccccccchhhhhcccccCcEEEEcCccCcc-c
Confidence 57999999998876432 45678789988877765421 0111 257899999999997532 2
Q ss_pred Cc----hHH------HHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 74 ND----VWI------CKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 74 ~~----~~~------~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.. .|+ ..+++-++++++++.++||||.|+|+|.+.
T Consensus 1046 ~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~l 1090 (1239)
T TIGR01857 1046 EPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKS 1090 (1239)
T ss_pred ccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHc
Confidence 11 353 245666777778899999999999999984
No 95
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=98.80 E-value=6.6e-08 Score=74.27 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=77.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe--EEEEEccCC---CCCC---------CC--CCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET--WDVFHVARG---EFPD---------DD--DFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~---~~p~---------~~--~~~~~d~iii~G 66 (126)
.+||+||...+....++. .|.++|.....+ ++.+++..- ..+. .+ .-..|||+||+|
T Consensus 35 pL~I~ILNLMP~K~~TE~-------Q~lRlL~ntplqv~i~~~~~~sh~~k~t~~~hl~~fY~~f~~ik~~~fDGlIITG 107 (300)
T TIGR01001 35 PLEILILNLMPKKIETEN-------QFLRLLSNSPLQVNITLLRTDSRKSKNTPIEHLNKFYTTFEAVKDRKFDGLIITG 107 (300)
T ss_pred ceeEEEEecCCccHHHHH-------HHHHHhcCCCCceEEEEEEeccccCCCCCHHHHHHHhhCHHHHhcCCCCEEEEcC
Confidence 479999999999865543 477888666555 455554321 0010 01 126899999999
Q ss_pred CCCC--CCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC-c-cccCCcccc
Q 033165 67 SCND--AHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS-S-HINASKIAG 121 (126)
Q Consensus 67 ~~~~--~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg-~-v~~~~~~~g 121 (126)
.|-. .+++.++..++.+++..+.+.-..+|.||||+|+-...+-| + ....+|++|
T Consensus 108 APvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~KlfG 166 (300)
T TIGR01001 108 APVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPEKLSG 166 (300)
T ss_pred CCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCCceEE
Confidence 9854 35666777888888888877889999999999995555544 3 334677777
No 96
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=98.80 E-value=9.7e-09 Score=73.85 Aligned_cols=89 Identities=22% Similarity=0.287 Sum_probs=59.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC-CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG-ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
|||+||-.+....+ + .+++++.+ .++..++- | +++++.|++|||||.+......-....+.
T Consensus 1 m~IGVLalQG~v~E-------H----~~~l~~~~~~e~~~Vk~-----~--~dL~~~d~LIiPGGESTTi~rL~~~~gl~ 62 (194)
T COG0311 1 MKIGVLALQGAVEE-------H----LEALEKAGGAEVVEVKR-----P--EDLEGVDGLIIPGGESTTIGRLLKRYGLL 62 (194)
T ss_pred CeEEEEEecccHHH-------H----HHHHHhhcCCceEEEcC-----H--HHhccCcEEEecCccHHHHHHHHHHcCcH
Confidence 68999988887532 1 24555663 55544441 2 36789999999999764422111111245
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
+-|+++.+.++|++|.|.|+-+||+-.-
T Consensus 63 e~l~~~~~~G~Pv~GTCAGlIlLakei~ 90 (194)
T COG0311 63 EPLREFIADGLPVFGTCAGLILLAKEIL 90 (194)
T ss_pred HHHHHHHHcCCceEEechhhhhhhhhhc
Confidence 6678888889999999999999996443
No 97
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.79 E-value=7e-08 Score=86.23 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=67.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC--CCCc-hHH-
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA--HGND-VWI- 78 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~--~~~~-~~~- 78 (126)
++|++|+.....+.+.. ...+|+..|++...++..+- ......+++|++|+++||.+-- .+.. -|.
T Consensus 1037 ~pkVaVl~~pGtN~~~e---------~~~Af~~aGf~~~~V~~~dl-~~~~~~L~~~~glv~pGGFSyGD~l~sg~~wa~ 1106 (1307)
T PLN03206 1037 KPKVAIIREEGSNGDRE---------MAAAFYAAGFEPWDVTMSDL-LNGRISLDDFRGIVFVGGFSYADVLDSAKGWAG 1106 (1307)
T ss_pred CCeEEEEECCCCCCHHH---------HHHHHHHcCCceEEEEeeec-ccccccccceeEEEEcCcCCCccccchHHHHHH
Confidence 57999999988876432 45678888988876665421 1222358899999999997421 1111 354
Q ss_pred -----HHHHHHHHHHH-hcCCcEEEEchHHHHHHHH
Q 033165 79 -----CKLIALLKQLD-SLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 79 -----~~~~~~i~~~~-~~~~PvlGIC~G~Q~la~~ 108 (126)
..+++.+++++ +.+.++||||.|+|+|.+.
T Consensus 1107 ~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~l 1142 (1307)
T PLN03206 1107 SIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALL 1142 (1307)
T ss_pred HHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHc
Confidence 34566677777 4589999999999999984
No 98
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=98.78 E-value=8.1e-08 Score=86.04 Aligned_cols=96 Identities=16% Similarity=0.165 Sum_probs=68.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-----hH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-----VW 77 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-----~~ 77 (126)
++|++|+.....+.+.. +..+|...|++...++..+- .....++++|++|+++||.+ |.+. .|
T Consensus 1055 ~p~vail~~pG~N~~~e---------~~~Af~~aGf~~~~v~~~dl-~~~~~~l~~~~~lv~~GGFS--ygD~lgsg~~~ 1122 (1310)
T TIGR01735 1055 RPKVAILREQGVNGDRE---------MAAAFDRAGFEAWDVHMSDL-LAGRVHLDEFRGLAACGGFS--YGDVLGAGKGW 1122 (1310)
T ss_pred CceEEEEECCCCCCHHH---------HHHHHHHhCCCcEEEEEecc-ccCCcchhheeEEEEcCCCC--CccchhHHHHH
Confidence 47999999888875422 45678888988777765421 12223588999999999964 2322 35
Q ss_pred HH------HHHHHHHHHH-hcCCcEEEEchHHHHHHHHhC
Q 033165 78 IC------KLIALLKQLD-SLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 78 ~~------~~~~~i~~~~-~~~~PvlGIC~G~Q~la~~~G 110 (126)
.. .+++.+++++ +.+.++||||.|+|+|...+|
T Consensus 1123 a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~g 1162 (1310)
T TIGR01735 1123 AKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLE 1162 (1310)
T ss_pred HHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhC
Confidence 43 4566777777 678999999999999994343
No 99
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.75 E-value=1.2e-07 Score=85.02 Aligned_cols=94 Identities=18% Similarity=0.219 Sum_probs=67.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-----hH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-----VW 77 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-----~~ 77 (126)
++|++|+.....+.+.. ...+|+..|++...++..+- ......+.+|++++++||.+. .+. .|
T Consensus 1035 ~pkv~il~~pG~N~~~e---------~~~Af~~aG~~~~~v~~~dl-~~~~~~l~~~~~l~~~GGFS~--gD~lgsg~~~ 1102 (1290)
T PRK05297 1035 RPKVAILREQGVNSHVE---------MAAAFDRAGFDAIDVHMSDL-LAGRVTLEDFKGLVACGGFSY--GDVLGAGEGW 1102 (1290)
T ss_pred CCeEEEEECCCCCCHHH---------HHHHHHHcCCCeEEEEeecC-cCCCCChhhCcEEEECCccCC--cccchHHHHH
Confidence 46999999988876422 45678889988877765421 122235899999999999642 332 25
Q ss_pred HH------HHHHHHHHHH-hcCCcEEEEchHHHHHHHH
Q 033165 78 IC------KLIALLKQLD-SLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 78 ~~------~~~~~i~~~~-~~~~PvlGIC~G~Q~la~~ 108 (126)
.. .+++.+++++ +.+.++||||.|+|+|.+.
T Consensus 1103 a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~l 1140 (1290)
T PRK05297 1103 AKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNL 1140 (1290)
T ss_pred HHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHh
Confidence 54 3466677766 5789999999999999994
No 100
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.73 E-value=1.3e-07 Score=67.45 Aligned_cols=95 Identities=25% Similarity=0.313 Sum_probs=62.6
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC----------------------C--CCC---CCCC-
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG----------------------E--FPD---DDDF- 56 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----------------------~--~p~---~~~~- 56 (126)
||+|+-.+...+. ++.. ..+.|++.|.+++++.+..+ . ++. .+++
T Consensus 1 kv~il~~~g~~~~------e~~~-p~~~l~~ag~~v~~vs~~~~~~~~v~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~ 73 (180)
T cd03169 1 KILILTGDFVEDY------EVMV-PFQALQEVGHEVDVVAPGKKKGDTVVTAIHDFPGWQTYTEKPGHRFAVTADFDEVD 73 (180)
T ss_pred CEEEEeCCCccHH------HHHH-HHHHHHHCCCEEEEEcCCCCCCccccccccccccccchhccCCcEEeccCCcccCC
Confidence 6778776665432 1222 34577788888888865422 0 100 1122
Q ss_pred -CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 57 -GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 57 -~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.+||+|+|+||+.... ......+.++|+++.++++|+.|||.|.++|+.+
T Consensus 74 ~~~~D~liv~GG~~~~~--~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 74 PDDYDALVIPGGRAPEY--LRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HhHCCEEEEcCCCChhh--hccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 3789999999963211 1112457788999999999999999999999986
No 101
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.73 E-value=1.4e-08 Score=71.60 Aligned_cols=55 Identities=13% Similarity=0.088 Sum_probs=43.7
Q ss_pred CCCCcCEEEEcCCCCCCCCCchHH--HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 55 DFGSYDGYVITGSCNDAHGNDVWI--CKLIALLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~~~~~~--~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
.+.++|+|+|+||....++ ..|. ..+.+.|+++.++++||+|+|-|+|+|++.+=
T Consensus 4 ~~~~~D~i~lpGg~pe~~~-~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 4 LPPDADGIYLPGGYPELFA-LELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCCCCEEEECCCcHHHHH-HHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 4578999999999644432 2333 34678899999999999999999999999885
No 102
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=98.70 E-value=9.3e-08 Score=57.80 Aligned_cols=77 Identities=32% Similarity=0.531 Sum_probs=54.6
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHH
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVR 105 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~l 105 (126)
.+.+.+++.+.+++++..............++|++|++|++...... .+.....+++.+..++++|++|+|.|.|++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lii~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 16 SPLDALREAGAEVDVVSPDGGPVESDVDLDDYDGLILPGGPGTPDDL-AWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred cHHHHHHhCCCEEEEEeCCCCcccccCCcccCCEEEECCCCcchhhh-ccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 35567778888888887654321111246789999999997655332 134567777888877889999999999864
No 103
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=98.70 E-value=4.4e-08 Score=79.94 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=42.2
Q ss_pred CCCCcCEEEEcCCCCCCCCCchHHHH--HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 55 DFGSYDGYVITGSCNDAHGNDVWICK--LIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~~~~~~~~--~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
++.++|+|+++||....+ +..|..+ +.+.|+++.+.+.|++|||-|+|+|++.+
T Consensus 281 ~l~~~d~lilpGg~~~~~-~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 281 SLTGCDAVIIPGSKSTIA-DLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred ccccCCEEEECCcchHHH-HHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 466899999999963322 2345444 56778888888999999999999999976
No 104
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=98.68 E-value=2.8e-07 Score=64.56 Aligned_cols=95 Identities=25% Similarity=0.234 Sum_probs=63.0
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc-CCC---------C-CC--CCCC--CCcCEEEEcCCCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA-RGE---------F-PD--DDDF--GSYDGYVITGSCN 69 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~---------~-p~--~~~~--~~~d~iii~G~~~ 69 (126)
||+|+..+.-... ++.. +.+.|+..+.+++++.+. ... + ++ .++. .+||+|+|+||+.
T Consensus 1 ~v~il~~~gf~~~------e~~~-~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~ 73 (165)
T cd03134 1 KVAILAADGFEDV------ELTY-PLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTN 73 (165)
T ss_pred CEEEEcCCCchHH------HHHH-HHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCC
Confidence 6788877665432 1222 345677889998888655 221 1 11 0112 3689999999973
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
. +.......+.++|+++.++++|+.+||.|.++|+++
T Consensus 74 -~-~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 74 -P-DKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred -h-hhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 2 111112457889999999999999999999999874
No 105
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=98.67 E-value=9.9e-08 Score=71.25 Aligned_cols=66 Identities=15% Similarity=0.180 Sum_probs=47.8
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh----CCccccCCccccc
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV----FSSHINASKIAGT 122 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~----Gg~v~~~~~~~g~ 122 (126)
.++||+|+||||.....+ ....+.+.++++++.+.++|+.+||.|-++|+.+. |..+.+.+++-++
T Consensus 92 ~~dYDav~iPGG~g~~~d-l~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a~~~~~g~~ll~Gk~vT~~ 161 (231)
T cd03147 92 PDDYGIFFVAGGHGTLFD-FPHATNLQKIAQQIYANGGVVAAVCHGPAILANLKDPKTGKPLIKGKTVTGF 161 (231)
T ss_pred HhhCcEEEECCCCchhhh-cccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhhhcccCCCcccCCCEEEee
Confidence 468999999999654322 22235678889999999999999999999999872 3244444444444
No 106
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=98.66 E-value=2.3e-07 Score=65.01 Aligned_cols=95 Identities=25% Similarity=0.272 Sum_probs=61.6
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC--------C-CC--CCCC--CCcCEEEEcCCCCCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE--------F-PD--DDDF--GSYDGYVITGSCNDA 71 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--------~-p~--~~~~--~~~d~iii~G~~~~~ 71 (126)
||+|+..+.-.+. ++.. ..+.|.+.|.+++++...... + ++ .+++ .+||+|+++||+..
T Consensus 1 ~v~il~~~g~~~~------e~~~-~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~- 72 (166)
T TIGR01382 1 KLLVLTTDEFEDS------ELLY-PLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAP- 72 (166)
T ss_pred CEEEEecCCchHH------HHHH-HHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCH-
Confidence 6778776665432 1122 346677788888777643211 1 00 1112 36999999999642
Q ss_pred CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 72 HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 72 ~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
........+.++|+++.++++|+.+||.|.++|+++
T Consensus 73 -~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 73 -EYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred -HHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 111112457888999999999999999999999985
No 107
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.66 E-value=3.7e-08 Score=79.54 Aligned_cols=91 Identities=21% Similarity=0.212 Sum_probs=62.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--H
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--L 81 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--~ 81 (126)
.||+|..-..-. | -|.+++ ++|++. .++..+.+-.++ .+.++|+|+|+||....++ .|+.. .
T Consensus 234 ~~iavA~D~AF~------F-yY~enl-~~L~~~-aelv~fSPl~~~-----~lp~~D~l~lpGG~~e~~~--~~L~~n~~ 297 (433)
T PRK13896 234 PTVAVARDAAFC------F-RYPATI-ERLRER-ADVVTFSPVAGD-----PLPDCDGVYLPGGYPELHA--DALADSPA 297 (433)
T ss_pred CeEEEEEcCccc------e-eCHHHH-HHHHhc-CcEEEEcCCCCC-----CCCCCCEEEeCCCchhhHH--HHHHhCCc
Confidence 477777532221 1 267777 467777 788877764332 3457999999999744322 34443 3
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
.+-|+++.+++.|++|+|-|+|+|++.+-
T Consensus 298 ~~~i~~~~~~G~pi~aeCGG~q~L~~~i~ 326 (433)
T PRK13896 298 LDELADRAADGLPVLGECGGLMALAESLT 326 (433)
T ss_pred HHHHHHHHHCCCcEEEEehHHHHhhcccc
Confidence 46788888899999999999999999883
No 108
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=98.64 E-value=3.5e-07 Score=65.53 Aligned_cols=99 Identities=25% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC--CC----------C--CCCCC--CCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG--EF----------P--DDDDF--GSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~--~~----------p--~~~~~--~~~d~iii~G 66 (126)
++|++|+........ ++... .+.|++.+.++++..+... .. + ..+.. ++||++++||
T Consensus 2 ~~~i~i~~~~g~e~~------E~~~p-~~~l~~ag~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ydal~ipG 74 (188)
T COG0693 2 MKKIAILLADGFEDL------ELIVP-YDVLRRAGFEVDVASPEGKGKSVTSKRGGLVVADDKAFDDADAADYDALVIPG 74 (188)
T ss_pred CceeEEEecCcceeh------hHhHH-HHHHHHCCCeEEEEecCCCcceeecccCcceEecccccccCCHhHCCEEEECC
Confidence 468888877665431 22222 3577888887776655431 00 0 01123 4999999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 67 SCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
|...+....++ ..+.++++++.+.++||.+||.|.++|+.+-
T Consensus 75 G~~~~~~~~~~-~~~~~~v~~~~~~~k~vaaIC~g~~~L~~ag 116 (188)
T COG0693 75 GDHGPEYLRPD-PDLLAFVRDFYANGKPVAAICHGPAVLAAAG 116 (188)
T ss_pred CccchhhccCc-HHHHHHHHHHHHcCCEEEEEChhHHHHhccc
Confidence 94443222233 6788999999999999999999999998854
No 109
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=98.63 E-value=2.1e-07 Score=68.80 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=56.3
Q ss_pred HHHHhhCCCeEEEEEccCCC-----------C------------------CCCC--CCCCcCEEEEcCCCCCC---CC--
Q 033165 30 VRMLAEEGETWDVFHVARGE-----------F------------------PDDD--DFGSYDGYVITGSCNDA---HG-- 73 (126)
Q Consensus 30 ~~~l~~~g~~~~~~~~~~~~-----------~------------------p~~~--~~~~~d~iii~G~~~~~---~~-- 73 (126)
.+.|++.|+++++..+..+. . ...+ ++++||+|+||||.... .|
T Consensus 23 ~~~L~raG~~V~~aS~~gg~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ev~~~dyDalviPGG~~~~~~l~D~~ 102 (213)
T cd03133 23 LLALDRAGAEVQCFAPDIEQMHVVNHLTGEAEGESRNVLVESARIARGNIKDLAKLKAADFDALIFPGGFGAAKNLSDFA 102 (213)
T ss_pred HHHHHHCCCEEEEEeCCCCccCccccccccccccccceeeehhhhhhcCCCchHHCCHhHCCEEEECCCCchhhhhhhhc
Confidence 46788899999988763210 0 0001 24579999999995432 11
Q ss_pred ---CchH-HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 74 ---NDVW-ICKLIALLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 74 ---~~~~-~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
+..+ .+.+.++++++.++++|+.+||.|.++|+.+.+
T Consensus 103 ~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 103 VKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred ccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 0001 145788999999999999999999999999875
No 110
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=98.62 E-value=2.6e-07 Score=74.31 Aligned_cols=49 Identities=31% Similarity=0.469 Sum_probs=36.6
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
+...|||++|||...- . ++.....++.+.+.++|+||||+|||+-+.-+
T Consensus 361 l~~adGilvPGGFG~R-G----veG~i~Aak~ARen~iP~LGiCLGmQ~AvIEf 409 (585)
T KOG2387|consen 361 LKSADGILVPGGFGDR-G----VEGKILAAKWARENKIPFLGICLGMQLAVIEF 409 (585)
T ss_pred hccCCeEEeCCccccc-c----hhHHHHHHHHHHhcCCCeEeeehhhhHHHHHH
Confidence 4569999999997542 2 23344556777788999999999999876544
No 111
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=98.61 E-value=2.1e-08 Score=72.45 Aligned_cols=74 Identities=27% Similarity=0.350 Sum_probs=47.7
Q ss_pred HHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcC-CcEEEEchHHHHHHHHh
Q 033165 31 RMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLR-KKVLGICFGHQVRAITV 109 (126)
Q Consensus 31 ~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~-~PvlGIC~G~Q~la~~~ 109 (126)
+.|++.+.+...++- | +++++.||+|||||.+......-....+.+-|+++.+.+ +|++|.|.|+-+||+..
T Consensus 13 ~~l~~lg~~~~~Vr~-----~--~dL~~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v 85 (188)
T PF01174_consen 13 RMLERLGAEVVEVRT-----P--EDLEGLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEV 85 (188)
T ss_dssp HHHHHTTSEEEEE-S-----G--GGGTT-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEE
T ss_pred HHHHHcCCCeEEeCC-----H--HHHccCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhh
Confidence 567778887755441 2 367889999999996543221111123667788888887 99999999999999854
Q ss_pred CC
Q 033165 110 FS 111 (126)
Q Consensus 110 Gg 111 (126)
.+
T Consensus 86 ~~ 87 (188)
T PF01174_consen 86 EG 87 (188)
T ss_dssp CS
T ss_pred hh
Confidence 43
No 112
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=98.59 E-value=7.4e-07 Score=61.11 Aligned_cols=98 Identities=14% Similarity=0.133 Sum_probs=65.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC---------CC--CCCC--CCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF---------PD--DDDF--GSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---------p~--~~~~--~~~d~iii~G~~~ 69 (126)
.+||+||-.+.-... ++. .+.+.|+..+.+++++.+..+.. +. .++. .+||+++|+||..
T Consensus 1 ~~~v~ill~~g~~~~------e~~-~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~ 73 (142)
T cd03132 1 GRKVGILVADGVDAA------ELS-ALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAE 73 (142)
T ss_pred CCEEEEEEcCCcCHH------HHH-HHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCcc
Confidence 368999988766432 122 24567778899988887542211 11 1122 3699999999864
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.... ......+.+++++..++++|+.+||-|..+|+++
T Consensus 74 ~~~~-~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 74 AAFA-LAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred CHHH-HccChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 3210 0112457889999999999999999999999985
No 113
>PRK04155 chaperone protein HchA; Provisional
Probab=98.58 E-value=4.9e-07 Score=69.56 Aligned_cols=52 Identities=13% Similarity=0.086 Sum_probs=41.5
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.++||+|+||||..... +.+..+.+.++++++.++++||.+||.|.++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~~-dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGALI-GLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchHH-HHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 46899999999965432 23334568889999999999999999999988774
No 114
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.55 E-value=8.3e-07 Score=79.27 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=68.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-----hH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-----VW 77 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-----~~ 77 (126)
+.|++|+.....+.+.. +..+|...|++...++..+ +-....+++|++|+++||.+ +++. -|
T Consensus 929 ~p~VaIl~~pG~N~~~e---------~~~Af~~aGf~~~~v~~~d--l~~~~~l~~f~glv~~Ggfs--y~D~lgsg~~~ 995 (1202)
T TIGR01739 929 RHQVAVLLLPGQSVPHG---------LLAALTNAGFDPRIVSITE--LKKTDFLDTFSGLIIGGASG--TLDSEVGARAL 995 (1202)
T ss_pred CCeEEEEeCCCCCCHHH---------HHHHHHHcCCceEEEEecc--CCCCCchhheEEEEEcCcCC--CCccchHHHHH
Confidence 46899999988875422 4578888999888777643 21222478999999998864 3332 35
Q ss_pred H------HHHHHHHHHHH-hcCCcEEEEch-HHHHHHHHhCC
Q 033165 78 I------CKLIALLKQLD-SLRKKVLGICF-GHQVRAITVFS 111 (126)
Q Consensus 78 ~------~~~~~~i~~~~-~~~~PvlGIC~-G~Q~la~~~Gg 111 (126)
. ..+++.+++++ +.+.++||||. |+|+|++ +|-
T Consensus 996 a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~-lg~ 1036 (1202)
T TIGR01739 996 AAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLA-LNI 1036 (1202)
T ss_pred HHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHH-cCC
Confidence 5 45667788887 45999999998 9999998 443
No 115
>PHA03366 FGAM-synthase; Provisional
Probab=98.47 E-value=2.4e-06 Score=76.82 Aligned_cols=93 Identities=16% Similarity=0.080 Sum_probs=67.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc----hHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND----VWI 78 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~----~~~ 78 (126)
++|++|+.....+.+.. +..+|..+|+++..++..+- .... .+++|++|+++||.+.. |.. .|.
T Consensus 1028 ~prVaIl~~pG~N~~~e---------~~~Af~~aGf~~~~v~~~dL-~~~~-~l~~f~glv~~GGFS~g-D~l~~~~~~a 1095 (1304)
T PHA03366 1028 RHRVAVLLLPGCPGPHA---------LLAAFTNAGFDPYPVSIEEL-KDGT-FLDEFSGLVIGGSSGAE-DSYTGARAAV 1095 (1304)
T ss_pred CCeEEEEECCCCCCHHH---------HHHHHHHcCCceEEEEeecC-CCCC-ccccceEEEEcCCCCCc-ccccHHHHHH
Confidence 57999999988875422 45778889998877776421 1222 38999999999997532 221 354
Q ss_pred ------HHHHHHHHHHHh-cCCcEEEEch-HHHHHHH
Q 033165 79 ------CKLIALLKQLDS-LRKKVLGICF-GHQVRAI 107 (126)
Q Consensus 79 ------~~~~~~i~~~~~-~~~PvlGIC~-G~Q~la~ 107 (126)
.++++.++++++ .+.++||||. |+|+|++
T Consensus 1096 ~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~ 1132 (1304)
T PHA03366 1096 AALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFA 1132 (1304)
T ss_pred HHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHH
Confidence 345567777774 5999999998 9999998
No 116
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=98.41 E-value=5.8e-06 Score=59.59 Aligned_cols=98 Identities=18% Similarity=0.164 Sum_probs=61.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-C----------C-CC--CCC--CCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-E----------F-PD--DDD--FGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~----------~-p~--~~~--~~~~d~iii~G 66 (126)
++||+|+-...-.+. ++.. ..+.|++.+.++++..+... . + ++ .++ .++||.|+|+|
T Consensus 2 ~~~~~il~~~g~~~~------e~~~-p~~~l~~ag~~v~~~s~~~~~~~~v~ss~G~~v~~d~~l~~~~~~~~D~l~ipG 74 (196)
T PRK11574 2 SASALVCLAPGSEET------EAVT-TIDLLVRGGIKVTTASVASDGNLEITCSRGVKLLADAPLVEVADGDFDVIVLPG 74 (196)
T ss_pred CceEEEEeCCCcchh------hHhH-HHHHHHHCCCeEEEEEccCCCCceEEcCCCCEEeCCCCHHHCCCCCCCEEEECC
Confidence 368999987665432 1222 23566667887777654311 0 0 11 112 24799999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 67 SCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
|...... ..-.+.+.++++++.++++++.+||-|..+|...
T Consensus 75 G~~~~~~-~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~~ 115 (196)
T PRK11574 75 GIKGAEC-FRDSPLLVETVRQFHRSGRIVAAICAAPATVLVP 115 (196)
T ss_pred CCchhhh-hhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHHh
Confidence 8633211 1111457889999999999999999999976543
No 117
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=98.40 E-value=1.6e-06 Score=70.51 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=57.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK-- 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~-- 80 (126)
.+|+|+....-. ||.+| +.|+. .+..+.++.+. +++.+.|.+||||+.... .+..|.++
T Consensus 252 i~Iav~~lp~is-----NFtD~-----dpL~~~~~v~v~~v~~~-------~~l~~~dlvIlPGsk~t~-~DL~~lr~~g 313 (486)
T COG1492 252 IRIAVIRLPRIS-----NFTDF-----DPLRAEPDVRVRFVKPG-------SDLRDADLVILPGSKNTI-ADLKILREGG 313 (486)
T ss_pred eEEEEecCCCcc-----ccccc-----hhhhcCCCeEEEEeccC-------CCCCCCCEEEeCCCcccH-HHHHHHHHcC
Confidence 367777665442 33322 23332 35556555521 256679999999996543 44555543
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCC
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFS 111 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg 111 (126)
+.+-+.+..+.+.|++|||-|+|+|.+.+--
T Consensus 314 ~d~~i~~~~~~~~~viGICGG~QmLG~~i~D 344 (486)
T COG1492 314 MDEKILEYARKGGDVIGICGGYQMLGRRLKD 344 (486)
T ss_pred HHHHHHHHHhCCCCEEEEcchHHhhhhhhcC
Confidence 3334555666799999999999999987755
No 118
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=98.28 E-value=1e-06 Score=59.21 Aligned_cols=47 Identities=17% Similarity=0.133 Sum_probs=33.0
Q ss_pred CCcCEEEEcCCCCCCCCCchHHH-HHHHHHHHHHhcCCcEEEEchHHHHH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWIC-KLIALLKQLDSLRKKVLGICFGHQVR 105 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~-~~~~~i~~~~~~~~PvlGIC~G~Q~l 105 (126)
.++|.+|+|||..... ...+. .-.+.|++.++.++|+||||+|.-+.
T Consensus 43 ~~ad~lVlPGGa~~~~--~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLPY--CRALNGKGNRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHHH--HHHHHhhCcHHHHHHHHCCCcEEEEecCccce
Confidence 4899999999743321 11111 11567888888899999999998765
No 119
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=98.28 E-value=1.9e-06 Score=64.53 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=70.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHH-HH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWIC-KL 81 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~-~~ 81 (126)
.+||+++-+-.... .+..|...+.+.|++.|.+++.++..++ + .+.+.+.|+|+++||.....- ..|.+ .+
T Consensus 31 ~~~v~fIPtAs~~~----~~~~y~~~~~~af~~lG~~v~~l~~~~d--~-~~~l~~ad~I~v~GGnt~~l~-~~l~~~gl 102 (233)
T PRK05282 31 RRKAVFIPYAGVTQ----SWDDYTAKVAEALAPLGIEVTGIHRVAD--P-VAAIENAEAIFVGGGNTFQLL-KQLYERGL 102 (233)
T ss_pred CCeEEEECCCCCCC----CHHHHHHHHHHHHHHCCCEEEEeccchh--h-HHHHhcCCEEEECCccHHHHH-HHHHHCCc
Confidence 46899997755431 3445788888999999998877664422 1 134789999999999321100 12222 25
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
.+.|++++++++|+.|.|.|+-+++....
T Consensus 103 ~~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 103 LAPIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred HHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 67788888899999999999999888665
No 120
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=98.27 E-value=6.5e-06 Score=64.72 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=58.0
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCC-CCCCchHHHHHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCND-AHGNDVWICKLIAL 84 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~-~~~~~~~~~~~~~~ 84 (126)
+-+|+.+..+ ++ .+.++++..|+++..+.. |. ++.+.|.+|+||...- +.-+.-....+.+-
T Consensus 4 v~~ld~~agn--~~--------si~nal~hlg~~i~~v~~-----P~--DI~~a~rLIfPGVGnfg~~~D~L~~~Gf~ep 66 (541)
T KOG0623|consen 4 VTLLDYGAGN--VR--------SIRNALRHLGFSIKDVQT-----PG--DILNADRLIFPGVGNFGPAMDVLNRTGFAEP 66 (541)
T ss_pred EEEEecCCcc--HH--------HHHHHHHhcCceeeeccC-----ch--hhccCceEeecCcccchHHHHHHhhhhhHHH
Confidence 4566666653 22 367888899988876541 33 5789999999997421 11111122335566
Q ss_pred HHHHHhcCCcEEEEchHHHHHHH
Q 033165 85 LKQLDSLRKKVLGICFGHQVRAI 107 (126)
Q Consensus 85 i~~~~~~~~PvlGIC~G~Q~la~ 107 (126)
|++..+.++|++|||.|.|+|..
T Consensus 67 lr~YiesgkPfmgicvGlQaLF~ 89 (541)
T KOG0623|consen 67 LRKYIESGKPFMGICVGLQALFD 89 (541)
T ss_pred HHHHHhcCCCeEeehhhHHHHhc
Confidence 88888899999999999999965
No 121
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.26 E-value=8.3e-06 Score=57.66 Aligned_cols=49 Identities=22% Similarity=0.206 Sum_probs=39.6
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.+||.|+|+||+...... .+.+.++|+++.++++++.+||-|.++|+++
T Consensus 59 ~~~D~l~I~Gg~~~~~~~---~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNPE---APDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccCC---cHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 579999999996422211 2457889999988999999999999999995
No 122
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=98.24 E-value=2.3e-05 Score=55.86 Aligned_cols=52 Identities=19% Similarity=0.212 Sum_probs=41.2
Q ss_pred CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+..++|.|+|+||..... ....+.+.++|++..++++++.+||-|.++|+++
T Consensus 61 ~~~~~D~liipGg~~~~~--~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 61 ALAAADTVIVPGGPDVDG--RPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred ccCCCCEEEECCCccccc--ccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 456899999999854321 1123568889999988999999999999999985
No 123
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=98.22 E-value=9.8e-06 Score=56.26 Aligned_cols=79 Identities=29% Similarity=0.303 Sum_probs=54.5
Q ss_pred HHHHHhhCCCeEEEEEccCCCC----------CC--CCC--CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCc
Q 033165 29 FVRMLAEEGETWDVFHVARGEF----------PD--DDD--FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKK 94 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~----------p~--~~~--~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~P 94 (126)
+.+.|+..+.+++++.+..+.. |+ .++ ..+||.++|+||+.... .....+.+.++++++.+++++
T Consensus 17 ~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~~~~~-~~~~~~~l~~~l~~~~~~~~~ 95 (163)
T cd03135 17 PVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGLPGAQ-NLADNEKLIKLLKEFNAKGKL 95 (163)
T ss_pred HHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCCchHH-HHHhCHHHHHHHHHHHHcCCE
Confidence 4567778888888776432110 11 112 26899999999862221 111125578899999999999
Q ss_pred EEEEchHHHHHHHH
Q 033165 95 VLGICFGHQVRAIT 108 (126)
Q Consensus 95 vlGIC~G~Q~la~~ 108 (126)
+.+||-|..+|+++
T Consensus 96 i~~ic~g~~~La~a 109 (163)
T cd03135 96 IAAICAAPAVLAKA 109 (163)
T ss_pred EEEEchhHHHHHHc
Confidence 99999999999996
No 124
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=98.14 E-value=2.5e-05 Score=55.20 Aligned_cols=96 Identities=25% Similarity=0.221 Sum_probs=59.2
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE--EEccCC-CC---------CC--CCC--CCCcCEEEEcCCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV--FHVARG-EF---------PD--DDD--FGSYDGYVITGSC 68 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~-~~---------p~--~~~--~~~~d~iii~G~~ 68 (126)
||+|+-.+.-... ++.. ..+.|+..|.++++ +.+..+ .. +. .++ ..+||.|+|+||.
T Consensus 1 ~v~il~~~gf~~~------e~~~-~~~~l~~a~~~~~~~~~s~~g~~~v~~~~g~~v~~~~~~~~~~~~~~D~l~v~Gg~ 73 (179)
T TIGR01383 1 KVLVPLAPGFEEM------EAVI-TVDVLRRAGIKVTVAIVGLNGKLPVKGSRGVKILADASLEDVDLEEFDAIVLPGGM 73 (179)
T ss_pred CEEEEecCCchHH------HHHH-HHHHHHHCCCEEEEEEeccCCCcceEcCCCCEEeCCCCHHHCCcccCCEEEECCCc
Confidence 6777766554321 1222 34667777766664 433211 10 11 011 4579999999985
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 69 NDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.... ...-.+.+.++|++..++++++.+||-|..+|+++
T Consensus 74 ~~~~-~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 74 PGAE-NLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred hHHH-HHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 3211 11112457889999999999999999999999986
No 125
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=98.13 E-value=5.8e-06 Score=61.80 Aligned_cols=51 Identities=16% Similarity=0.115 Sum_probs=40.6
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
++||+|++|||..... +.+-...+.++++++.++++|+.+||.|.++|..+
T Consensus 95 ~dYDav~iPGG~g~~~-dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALI-GIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChh-hcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 5899999999965432 23333567888999999999999999999988764
No 126
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=98.10 E-value=9e-07 Score=61.27 Aligned_cols=52 Identities=27% Similarity=0.371 Sum_probs=39.3
Q ss_pred CCCcCEEEEcCCCCCCCCCch-HHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 56 FGSYDGYVITGSCNDAHGNDV-WICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~-~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
..+||+|+||||.... +... ..+.+.++++++.+.++|+.+||.|..+|+.+
T Consensus 35 ~~~yDalilpGG~~~~-~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 35 PSDYDALILPGGHGGA-DDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGGESEEEEE-BTHHH-HHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred hhhCCEEEECCCCchh-hhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 4579999999996532 1111 13668899999999999999999999999886
No 127
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=98.09 E-value=4.5e-06 Score=61.78 Aligned_cols=98 Identities=23% Similarity=0.246 Sum_probs=63.7
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHH--HHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCCchH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFG--VFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~--~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~~~~ 77 (126)
|.+++|+-|.- ++-..||+-.. .+++..+.+|+.+++..+...+ +| .+.+|.+++.||.. +.+.--
T Consensus 1 ~~eL~I~~lyp-----dlmntYGD~GNil~Lr~ra~~rgi~v~i~~vsl~d~~~----~~~~Dl~~~GGgqD--~eQ~i~ 69 (250)
T COG3442 1 MYELTIGHLYP-----DLMNTYGDNGNILVLRQRAEKRGIKVEIVEVSLTDTFP----DDSYDLYFLGGGQD--YEQEIA 69 (250)
T ss_pred CceEEeeeech-----hhhhccCCCCceeeehHHHHhcCCceEEEEeecCCCCC----cccccEEEecCchH--HHHHHH
Confidence 45556665532 33445555333 3456677889999998886443 32 26799988888842 222111
Q ss_pred ---HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 78 ---ICKLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 78 ---~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
.....+-+++.++.++|+|.||-|.|+|.+.+
T Consensus 70 t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~yY 104 (250)
T COG3442 70 TRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQYY 104 (250)
T ss_pred hhhhccccHHHHHHHhcCCcEEEEccchhhcccee
Confidence 12233568888889999999999999998754
No 128
>PRK11249 katE hydroperoxidase II; Provisional
Probab=98.05 E-value=2.4e-05 Score=66.95 Aligned_cols=98 Identities=15% Similarity=0.117 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC--------CCCCCC-----CCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE--------FPDDDD-----FGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--------~p~~~~-----~~~~d~iii~G~~~ 69 (126)
.+||+||..+....... . -+.+.|+..|..+.++.+..+. ++.... ...||+|+|+||..
T Consensus 597 gRKIaILVaDG~d~~ev------~-~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~ 669 (752)
T PRK11249 597 GRKVAILLNDGVDAADL------L-AILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKA 669 (752)
T ss_pred ccEEEEEecCCCCHHHH------H-HHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCch
Confidence 47999999887654321 1 3567788889988887653211 111111 12699999999864
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.+ ....-...+.++|+++.+.+++|.+||-|.++|+.+
T Consensus 670 ~~-~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 670 NI-ADLADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred hH-HHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 32 111112457889999999999999999999999974
No 129
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=98.03 E-value=4.8e-05 Score=57.58 Aligned_cols=112 Identities=17% Similarity=0.254 Sum_probs=70.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE--EEccCC---CCCCC-----------CCCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV--FHVARG---EFPDD-----------DDFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~---~~p~~-----------~~~~~~d~iii~G 66 (126)
..||+||...+..-..+ ..+.++|...-.++++ .+...- .-|.. ..-.+|||+||+|
T Consensus 35 PL~IlilNLMP~Ki~TE-------~Q~lRLL~nsPLQV~itll~~~sh~~KnTp~eHl~~FY~tfeeVk~~~FDG~IiTG 107 (307)
T COG1897 35 PLKILILNLMPKKIETE-------TQILRLLGNSPLQVDITLLRIDSHESKNTPAEHLNSFYCTFEEVKDQKFDGLIITG 107 (307)
T ss_pred cceeeeeecCchhHHHH-------HHHHHHhcCCCceEEEEEEEecCcCCCCCcHHHHHHHhhcHHHHhhcccCceEEeC
Confidence 36999999998764332 2466777665555543 333211 01110 0226899999999
Q ss_pred CCCCC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC--ccccCCcccc
Q 033165 67 SCNDA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS--SHINASKIAG 121 (126)
Q Consensus 67 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg--~v~~~~~~~g 121 (126)
.|... +++..+.+++.+++......-.-.|-||||.|.--..+-| +....+|..|
T Consensus 108 APve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~Kl~G 166 (307)
T COG1897 108 APVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPEKLSG 166 (307)
T ss_pred CcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccchhhhc
Confidence 98543 4555566667777666654557899999999987776655 3333455554
No 130
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.00 E-value=1.3e-05 Score=57.28 Aligned_cols=70 Identities=19% Similarity=0.136 Sum_probs=47.5
Q ss_pred CCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcC-CcEEEEchHHHHHHHHhCC
Q 033165 37 GETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLR-KKVLGICFGHQVRAITVFS 111 (126)
Q Consensus 37 g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~-~PvlGIC~G~Q~la~~~Gg 111 (126)
++++++..+.. ++++.+.|++|||||.+....-..-...+.+-+..++... +|++|.|.||-+|...+-+
T Consensus 40 ~Ik~~~~tVKT-----~~D~aq~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~n 110 (226)
T KOG3210|consen 40 EIKLSVMTVKT-----KNDLAQCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQLSN 110 (226)
T ss_pred eEEEEEEeecC-----HHHHhhCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhhcC
Confidence 45556666532 2368899999999997654322222333556666666654 9999999999999876644
No 131
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.97 E-value=2.1e-05 Score=56.49 Aligned_cols=54 Identities=22% Similarity=0.140 Sum_probs=41.4
Q ss_pred CCCCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 55 DFGSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+.++||.|+||||...... .....+.+.++|++..++++++.+||-|..+|+.+
T Consensus 66 ~~~~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 66 DVPAPDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred ccCCCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 4568999999998643210 12223567889999989999999999999999984
No 132
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=97.95 E-value=1.2e-05 Score=59.50 Aligned_cols=52 Identities=21% Similarity=0.190 Sum_probs=40.9
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+++||+|+|+||+....+ ..-.+.+.++++++.++++++.+||.|.++|+.+
T Consensus 88 ~~~~dal~ipGG~~~~~~-l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 88 PSDYDAIFIPGGHGPMFD-LPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred HhHceEEEECCCcccccc-cccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 358999999999643221 1112568889999999999999999999999985
No 133
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=97.94 E-value=0.00028 Score=54.52 Aligned_cols=101 Identities=18% Similarity=0.144 Sum_probs=60.9
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh---CCCeEEEEEccCCC--------C-C--CCCCCCCcCEEEEcCC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE---EGETWDVFHVARGE--------F-P--DDDDFGSYDGYVITGS 67 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~--------~-p--~~~~~~~~d~iii~G~ 67 (126)
.+++|+|+-...-...- .....+.|...-.. ..++++++.+..+. + + ..++.+++|.||||||
T Consensus 8 ~~~~v~ill~~gf~~~~---~~~~~dvl~~a~~~~~~~~~~v~~vs~~~~~v~ss~g~~i~~d~~~~~~~~~D~livpGg 84 (322)
T PRK09393 8 HNHLVVALAYDGLCTFE---FGCAVEIFGLPRPELGVDWYRFAVAAVEPGPLRAAGGITVVADGGLELLDRADTIVIPGW 84 (322)
T ss_pred cccEEEEEEcCCCChhH---HHHHHHHHHHHHhhcCCCceEEEEEECCCCceEeCCCcEEeCCCCccccCCCCEEEECCC
Confidence 34599999888775421 11222333211011 11355555442110 0 0 1124578999999998
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.... . .....+.++|++..++++++.+||-|..+|+++
T Consensus 85 ~~~~-~--~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 85 RGPD-A--PVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred Cccc-c--cCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 5321 1 123568889999988999999999999999984
No 134
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.90 E-value=7.6e-05 Score=52.84 Aligned_cols=51 Identities=18% Similarity=0.188 Sum_probs=39.6
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
...||+|+|+||.... .....+.+.++|++..++++++.++|-|..+|+++
T Consensus 60 ~~~~D~lvipgg~~~~--~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 60 PPDLDVLLVPGGGGTR--ALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCCCEEEECCCcchh--hhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 4589999999995322 11112557888999988999999999999999884
No 135
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=97.83 E-value=6.5e-05 Score=54.92 Aligned_cols=98 Identities=15% Similarity=0.080 Sum_probs=67.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CCCC-CCCCCCcCEEEEcCCCCCCCCCc-hHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EFPD-DDDFGSYDGYVITGSCNDAHGND-VWIC 79 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p~-~~~~~~~d~iii~G~~~~~~~~~-~~~~ 79 (126)
..||+++-+....+ ..|..++.+.+++.|.+...+..... ..+. .+.+...|+|+++||.. ..-. .|..
T Consensus 29 ~~~i~~iptA~~~~------~~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~~l~~ad~I~~~GG~~--~~~~~~l~~ 100 (210)
T cd03129 29 GARVLFIPTASGDR------DEYGEEYRAAFERLGVEVVHLLLIDTANDPDVVARLLEADGIFVGGGNQ--LRLLSVLRE 100 (210)
T ss_pred CCeEEEEeCCCCCh------HHHHHHHHHHHHHcCCceEEEeccCCCCCHHHHHHHhhCCEEEEcCCcH--HHHHHHHHh
Confidence 46899998877642 24667788899999988876664321 0011 12468999999999832 1111 3333
Q ss_pred H-HHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 80 K-LIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 80 ~-~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
. ..+.|++..++++|+.|+|.|+.+++..
T Consensus 101 t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 101 TPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred CChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 3 5555666666899999999999999986
No 136
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=97.63 E-value=0.00021 Score=50.92 Aligned_cols=51 Identities=20% Similarity=0.134 Sum_probs=40.2
Q ss_pred CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+..++|.|+||||...... ..+.+.++|++..++++.+.+||-|..+|+++
T Consensus 61 ~~~~~D~liipgg~~~~~~---~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 61 DAPPLDYLFVVGGLGARRA---VTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred ccCCCCEEEEeCCCCcccc---CCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 3468999999998543211 12457888999888999999999999999984
No 137
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=97.61 E-value=9.3e-05 Score=59.74 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=66.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCC-CchHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHG-NDVWICKL 81 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~-~~~~~~~~ 81 (126)
.||+|.+-..-+ | -|.+++ ++|++.|.++..+.|-.++ +| ++.|+|.|+||--..+- +...-...
T Consensus 246 ~rIAVA~D~AF~------F-yY~~nl-~~Lr~~GAelv~FSPL~D~~lP-----~~~D~vYlgGGYPElfA~~L~~n~~~ 312 (451)
T COG1797 246 VRIAVARDAAFN------F-YYPENL-ELLREAGAELVFFSPLADEELP-----PDVDAVYLGGGYPELFAEELSANESM 312 (451)
T ss_pred ceEEEEecchhc------c-ccHHHH-HHHHHCCCEEEEeCCcCCCCCC-----CCCCEEEeCCCChHHHHHHHhhCHHH
Confidence 478887543321 1 256666 6788999999999876553 33 35999999999422221 11222446
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
++.|+++.+.++|++|=|-|+.-|++.+
T Consensus 313 ~~~i~~~~~~G~piyaECGGlMYL~~~l 340 (451)
T COG1797 313 RRAIKAFAAAGKPIYAECGGLMYLGESL 340 (451)
T ss_pred HHHHHHHHHcCCceEEecccceeehhhe
Confidence 7788999899999999999999999887
No 138
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=97.56 E-value=0.0001 Score=51.64 Aligned_cols=52 Identities=21% Similarity=0.208 Sum_probs=39.3
Q ss_pred CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+..++|.|||+|++.. .....-+.+.+++++..++++++.+||-|..+|+++
T Consensus 58 ~~~~~D~lvvpg~~~~--~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 58 DAPDFDILVVPGGPGF--DAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp CCSCCSEEEEE-STTH--HHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred hcccCCEEEeCCCCCc--hhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 4678999999999761 111112557788888888899999999999999996
No 139
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=97.39 E-value=0.00065 Score=50.72 Aligned_cols=96 Identities=21% Similarity=0.245 Sum_probs=59.2
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC----------CCC----CCCCCCcCEEEEcC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE----------FPD----DDDFGSYDGYVITG 66 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----------~p~----~~~~~~~d~iii~G 66 (126)
|.+++++|+-.+..++. + +.-. .+.|++.|+++++..+...+ +|+ +..-+.||.|||||
T Consensus 3 ~~~~~vlil~~~g~Ee~-E-----~ivp-~dVLrr~Gi~Vt~ag~~~~~~vkcs~~v~~~~d~~l~D~~~~~yDviilPG 75 (247)
T KOG2764|consen 3 ASKKAVLILCADGMEEY-E-----FIVP-IDVLRRGGIDVTVAGPNKKEGVKCSRGVHILPDNALFDVVDSKYDVIILPG 75 (247)
T ss_pred cccccEEEEccCCccee-E-----EEEe-HHHHHhcCceEEEecCCCCcccccccceEecccccchhhccccccEEEecC
Confidence 44566777766444321 0 1111 36778888888877654321 111 11127899999999
Q ss_pred C-CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHH
Q 033165 67 S-CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVR 105 (126)
Q Consensus 67 ~-~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~l 105 (126)
| +... .......+.+++++..+.++++..||.|--++
T Consensus 76 G~~g~e--~L~~~~~v~~lvK~q~~~gkLIaaICaap~~a 113 (247)
T KOG2764|consen 76 GLPGAE--TLSECEKVVDLVKEQAESGKLIAAICAAPLTA 113 (247)
T ss_pred Cchhhh--hhhhcHHHHHHHHHHHhcCCeEEEeecchHHH
Confidence 9 5432 12223456778888888999999999997443
No 140
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00077 Score=49.87 Aligned_cols=96 Identities=14% Similarity=0.118 Sum_probs=65.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCc-hHHH-H
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGND-VWIC-K 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~-~~~~-~ 80 (126)
+||+.+=+-... +.++.|..-.++.|++.|.+++-.++....... ...+.+.|.|.+.|| +.+.-. .|.+ .
T Consensus 33 ~~i~FIPtAs~~----~~~~~Yv~k~~~~l~~lg~~v~~L~l~~~~~~~Ie~~l~~~d~IyVgGG--NTF~LL~~lke~g 106 (224)
T COG3340 33 KTIAFIPTASVD----SEDDFYVEKVRNALAKLGLEVSELHLSKPPLAAIENKLMKADIIYVGGG--NTFNLLQELKETG 106 (224)
T ss_pred ceEEEEecCccc----cchHHHHHHHHHHHHHcCCeeeeeeccCCCHHHHHHhhhhccEEEECCc--hHHHHHHHHHHhC
Confidence 477777444432 345678999999999999998877766432111 113456999999999 333211 3333 2
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHH
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVR 105 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~l 105 (126)
+.++|++.+++++|.+|+-.|.-+-
T Consensus 107 ld~iIr~~vk~G~~YiG~SAGA~ia 131 (224)
T COG3340 107 LDDIIRERVKAGTPYIGWSAGANIA 131 (224)
T ss_pred cHHHHHHHHHcCCceEEeccCceee
Confidence 7788999999999999987776543
No 141
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.0022 Score=55.96 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=59.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC--CCC-chHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA--HGN-DVWIC 79 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~--~~~-~~~~~ 79 (126)
.+|++||.-+..+...+ +...|..+|++..-++.. +-+.....+++|-||+.+||.+-. -+. ..|..
T Consensus 1058 ~PkVAilREeGvNg~rE---------Ma~af~~AgF~~~DVtmt-DlL~G~~~ld~frGlaf~GGFSYaDvLgSakGWAa 1127 (1320)
T KOG1907|consen 1058 APKVAILREEGVNGDRE---------MAAAFYAAGFETVDVTMT-DLLAGRHHLDDFRGLAFCGGFSYADVLGSAKGWAA 1127 (1320)
T ss_pred CCceEEeeccccccHHH---------HHHHHHHcCCceeeeeee-hhhcCceeHhHhcceeeecCcchHhhhccccchhh
Confidence 46999998888764322 445677788765433332 112222367899999999997421 111 14543
Q ss_pred H------HHHHHHHHHh-cCCcEEEEchHHHHHHH
Q 033165 80 K------LIALLKQLDS-LRKKVLGICFGHQVRAI 107 (126)
Q Consensus 80 ~------~~~~i~~~~~-~~~PvlGIC~G~Q~la~ 107 (126)
. ++.-+.++.. .+.--||||.|.|++++
T Consensus 1128 sil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~ 1162 (1320)
T KOG1907|consen 1128 SILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSR 1162 (1320)
T ss_pred heeeChhHHHHHHHHhcCCCceeeecccHhHHHHH
Confidence 2 3333444433 47889999999999998
No 142
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=97.02 E-value=0.0038 Score=49.73 Aligned_cols=51 Identities=16% Similarity=0.101 Sum_probs=37.0
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.+++.+|+|||...++... .-..-.+.||++++.+.-.||||.|...-+..
T Consensus 48 ~~~~LlV~PGG~d~~y~~~-l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~~ 98 (367)
T PF09825_consen 48 SKCALLVMPGGADLPYCRS-LNGEGNRRIRQFVENGGGYLGICAGAYYASSR 98 (367)
T ss_pred cCCcEEEECCCcchHHHHh-hChHHHHHHHHHHHcCCcEEEECcchhhhcce
Confidence 6799999999975443211 11223567889999999999999999876653
No 143
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=96.84 E-value=0.0047 Score=46.68 Aligned_cols=98 Identities=13% Similarity=0.099 Sum_probs=64.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEccCCC-C--CC-CCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVARGE-F--PD-DDDFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~-~--p~-~~~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
.||+++-+-...+ ..|...+.+.|++.|. +++++.+...+ . |. .+.+...|+|+++||... .-..++
T Consensus 29 ~rI~~iptAS~~~------~~~~~~~~~~~~~lG~~~v~~l~i~~r~~a~~~~~~~~l~~ad~I~~~GGnq~--~l~~~l 100 (250)
T TIGR02069 29 AIIVIITSASEEP------REVGERYITIFSRLGVKEVKILDVREREDASDENAIALLSNATGIFFTGGDQL--RITSLL 100 (250)
T ss_pred ceEEEEeCCCCCh------HHHHHHHHHHHHHcCCceeEEEecCChHHccCHHHHHHHhhCCEEEEeCCCHH--HHHHHH
Confidence 5899997765433 2355667888888888 46766664211 0 11 124678999999999321 111111
Q ss_pred H--HHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 79 C--KLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 79 ~--~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
. .+.+.|+++++++.|+.|.-.|+-+++...
T Consensus 101 ~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~~ 133 (250)
T TIGR02069 101 GDTPLLDRLRKRVHEGIILGGTSAGAAVMSDTM 133 (250)
T ss_pred cCCcHHHHHHHHHHcCCeEEEccHHHHhcccce
Confidence 1 255778888888999999999999886544
No 144
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=96.64 E-value=0.0042 Score=45.84 Aligned_cols=98 Identities=17% Similarity=0.170 Sum_probs=64.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe-EEEEEccCCCC---CC-CCCCCCcCEEEEcCCCCCCCCCc-h
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET-WDVFHVARGEF---PD-DDDFGSYDGYVITGSCNDAHGND-V 76 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~---p~-~~~~~~~d~iii~G~~~~~~~~~-~ 76 (126)
..||+++-+....+ ..+...+.+.+++.|.+ ++++.....+- |. .+.+.+.|+|+++||... .-. .
T Consensus 29 ~~~i~~iptA~~~~------~~~~~~~~~~~~~lG~~~v~~~~~~~~~~a~~~~~~~~l~~ad~I~~~GG~~~--~~~~~ 100 (217)
T cd03145 29 GARIVVIPAASEEP------AEVGEEYRDVFERLGAREVEVLVIDSREAANDPEVVARLRDADGIFFTGGDQL--RITSA 100 (217)
T ss_pred CCcEEEEeCCCcCh------hHHHHHHHHHHHHcCCceeEEeccCChHHcCCHHHHHHHHhCCEEEEeCCcHH--HHHHH
Confidence 46899998877643 13455677788888874 45554432110 11 124678999999999321 111 1
Q ss_pred HHH-HHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 77 WIC-KLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 77 ~~~-~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
|.. .+.+.|+++++++.|+.|.-.|.-+++..
T Consensus 101 l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 101 LGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred HcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 222 35677888888999999999999998875
No 145
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.62 E-value=0.018 Score=41.23 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=45.2
Q ss_pred CCCCcCEEEEcCCCCCCCCCch---------HHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165 55 DFGSYDGYVITGSCNDAHGNDV---------WICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~~~~---------~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
+.+++|++|+|||..-...-.. -..++.++.+.+.+.++|+--||..--++...+|..+.
T Consensus 82 ~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~~ 150 (217)
T COG3155 82 DAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPLR 150 (217)
T ss_pred CHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCcee
Confidence 3468999999999754321111 12457778888888999999999999999999987543
No 146
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.50 E-value=0.027 Score=43.92 Aligned_cols=87 Identities=15% Similarity=0.220 Sum_probs=52.9
Q ss_pred CCCCe-EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC----C------------C-CCCCCCcCEE
Q 033165 1 MGGKK-FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF----P------------D-DDDFGSYDGY 62 (126)
Q Consensus 1 M~~~k-i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~----p------------~-~~~~~~~d~i 62 (126)
|+++| |+|+.+....... +....+.++|++.|.++.+.......+ + . .+..++.|.+
T Consensus 2 ~~~~~~I~iv~~~~~~~~~-----~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (306)
T PRK03372 2 MTASRRVLLVAHTGRDEAT-----EAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELV 76 (306)
T ss_pred CCCccEEEEEecCCCHHHH-----HHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEE
Confidence 67655 9999775543321 134457788888888876654221110 0 0 1112458999
Q ss_pred EEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 63 VITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 63 ii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
|..||-. .+....+.+...++|+|||=.|.
T Consensus 77 i~lGGDG----------T~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 77 LVLGGDG----------TILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred EEEcCCH----------HHHHHHHHhccCCCcEEEEecCC
Confidence 9999932 24445555555789999998774
No 147
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=96.37 E-value=0.0011 Score=46.32 Aligned_cols=81 Identities=12% Similarity=0.108 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHH--HHHHHHHHHhcCCcEEEEchH
Q 033165 25 YFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICK--LIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~--~~~~i~~~~~~~~PvlGIC~G 101 (126)
|...+.+.|++.|++++.+++...+.+. .+.+..+|+|+++||- +..-..++++ +.+.|++++++++++.|+-.|
T Consensus 1 y~~~~~~~f~~~g~~v~~l~~~~~~~~~~~~~i~~ad~I~~~GG~--~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAG 78 (154)
T PF03575_consen 1 YVEKFRKAFRKLGFEVDQLDLSDRNDADILEAIREADAIFLGGGD--TFRLLRQLKETGLDEAIREAYRKGGVIIGTSAG 78 (154)
T ss_dssp HHHHHHHHHHHCT-EEEECCCTSCGHHHHHHHHHHSSEEEE--S---HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHH
T ss_pred CHHHHHHHHHHCCCEEEEEeccCCChHHHHHHHHhCCEEEECCCC--HHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChH
Confidence 4456788899999887776654321000 1235789999999992 2111122222 667899988899999999999
Q ss_pred HHHHHH
Q 033165 102 HQVRAI 107 (126)
Q Consensus 102 ~Q~la~ 107 (126)
+-+++.
T Consensus 79 A~i~~~ 84 (154)
T PF03575_consen 79 AMILGP 84 (154)
T ss_dssp HHCTSS
T ss_pred HhhccC
Confidence 977533
No 148
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=96.36 E-value=0.061 Score=41.80 Aligned_cols=85 Identities=15% Similarity=0.076 Sum_probs=52.4
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCCCCCcCEEEEcCCCCCCCCCch
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDDFGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~~~~~d~iii~G~~~~~~~~~~ 76 (126)
|.++|++++.+.... ...+ ....+.++|++.|.++.+........+. ......+|.+|+.||-.
T Consensus 1 ~~~kkv~lI~n~~~~-~~~~----~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG------- 68 (305)
T PRK02645 1 MQLKQVIIAYKAGSS-QAKE----AAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIVLGGDG------- 68 (305)
T ss_pred CCcCEEEEEEeCCCH-HHHH----HHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEEECCcH-------
Confidence 889999999875432 2222 2344667788889887765432111110 11124689999999932
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEch
Q 033165 77 WICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
.+...++.+...++|++||=.
T Consensus 69 ---T~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 69 ---TVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred ---HHHHHHHHhccCCCCEEEEec
Confidence 244455555556899999987
No 149
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=96.27 E-value=0.0027 Score=48.15 Aligned_cols=101 Identities=16% Similarity=0.282 Sum_probs=56.4
Q ss_pred CeEEEEEcCCCch-HHHHh-hCC--HHHHHHHHHhhCCCeEEEEEccCCCCCCC---CCCCCcCEEEEcCCCCCCCCCch
Q 033165 4 KKFAVLLCAEDSE-YVKKK-YGG--YFGVFVRMLAEEGETWDVFHVARGEFPDD---DDFGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 4 ~ki~Il~~~~~~~-~~~~~-~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~p~~---~~~~~~d~iii~G~~~~~~~~~~ 76 (126)
+-|+||.+-.+.. ...+| ++. -..-++.+++..|+.+--+... + |.. ..++-..|||++||...-.+
T Consensus 53 PvIGIL~hpg~g~~~rl~n~t~~~yIAASYVK~aEsgGARViPli~n--e-pEe~lfqklelvNGviftGGwak~~d--- 126 (340)
T KOG1559|consen 53 PVIGILSHPGDGASGRLKNATGRSYIAASYVKLAESGGARVIPLIYN--E-PEEILFQKLELVNGVIFTGGWAKRGD--- 126 (340)
T ss_pred ceeEEeccCCCCccceeccccCcchhHHHHHHHHHcCCceEEEEecC--C-cHHHHHHHHHHhceeEecCccccccc---
Confidence 4467776654431 11122 332 1223456666778766544332 1 321 12467899999999543322
Q ss_pred HHHHHHHHHHHHHhc-----CCcEEEEchHHHHHHHHhC
Q 033165 77 WICKLIALLKQLDSL-----RKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~-----~~PvlGIC~G~Q~la~~~G 110 (126)
+.+-...+....+++ ..||.|||+|+.+|.....
T Consensus 127 Y~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiIS 165 (340)
T KOG1559|consen 127 YFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIIS 165 (340)
T ss_pred HHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHh
Confidence 333333444444442 4899999999999987654
No 150
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=95.61 E-value=0.15 Score=36.36 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=56.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
||+||+....+-. .++ -...+...|.+.|.++++.++..-..| .+++||+|||.-+-. ...|-+.+..
T Consensus 1 Mk~LIlYstr~Gq-T~k----IA~~iA~~L~e~g~qvdi~dl~~~~~~---~l~~ydavVIgAsI~----~~h~~~~~~~ 68 (175)
T COG4635 1 MKTLILYSTRDGQ-TRK----IAEYIASHLRESGIQVDIQDLHAVEEP---ALEDYDAVVIGASIR----YGHFHEAVQS 68 (175)
T ss_pred CceEEEEecCCCc-HHH----HHHHHHHHhhhcCCeeeeeehhhhhcc---ChhhCceEEEecchh----hhhhHHHHHH
Confidence 5888887655432 111 233467788889999999987643222 578999999975522 1234455556
Q ss_pred HHHHHHh--cCCcEEEEchHH
Q 033165 84 LLKQLDS--LRKKVLGICFGH 102 (126)
Q Consensus 84 ~i~~~~~--~~~PvlGIC~G~ 102 (126)
++++..+ ..+|..-+|.+.
T Consensus 69 Fv~k~~e~L~~kP~A~f~vnl 89 (175)
T COG4635 69 FVKKHAEALSTKPSAFFSVNL 89 (175)
T ss_pred HHHHHHHHHhcCCceEEEeeh
Confidence 6655444 478888888764
No 151
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=95.57 E-value=0.22 Score=35.58 Aligned_cols=85 Identities=24% Similarity=0.251 Sum_probs=46.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
||++|+.....- .+++ +...+.+.|+. |.+++++++.+.. . .++.+||.||+.++-.. ... .....+
T Consensus 1 MkilIvY~S~~G-~T~~----iA~~Ia~~l~~-g~~v~~~~~~~~~--~-~~l~~yD~vIlGspi~~--G~~--~~~~~~ 67 (177)
T PRK11104 1 MKTLILYSSRDG-QTRK----IASYIASELKE-GIQCDVVNLHRIE--E-PDLSDYDRVVIGASIRY--GHF--HSALYK 67 (177)
T ss_pred CcEEEEEECCCC-hHHH----HHHHHHHHhCC-CCeEEEEEhhhcC--c-cCHHHCCEEEEECcccc--CCc--CHHHHH
Confidence 478888765432 2221 34455666665 7788888865422 1 25788999777654321 111 123334
Q ss_pred HHHHHHh--cCCcEEEEchH
Q 033165 84 LLKQLDS--LRKKVLGICFG 101 (126)
Q Consensus 84 ~i~~~~~--~~~PvlGIC~G 101 (126)
++++... .++|+.-.|.|
T Consensus 68 fl~~~~~~l~~K~v~~F~v~ 87 (177)
T PRK11104 68 FVKKHATQLNQMPSAFFSVN 87 (177)
T ss_pred HHHHHHHHhCCCeEEEEEec
Confidence 4433221 47787777766
No 152
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.50 E-value=0.18 Score=39.07 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=51.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--C-----CCCCC-CCcCEEEEcCCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--P-----DDDDF-GSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--p-----~~~~~-~~~d~iii~G~~~~~~~~ 74 (126)
++||+|+-+...... . .....+.++|++.|.++.+-......+ + ..+++ +++|.+|+.||-.
T Consensus 5 ~~~i~iv~~~~~~~~-~----~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~lGGDG----- 74 (292)
T PRK03378 5 FKCIGIVGHPRHPTA-L----TTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIVVGGDG----- 74 (292)
T ss_pred CCEEEEEEeCCCHHH-H----HHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEEECCcH-----
Confidence 567999977655432 2 134457778888887765533111100 0 10122 3689999999932
Q ss_pred chHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 75 DVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 75 ~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
.+....+.+...++|++||=.|.
T Consensus 75 -----T~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 75 -----NMLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred -----HHHHHHHHhcCCCCeEEEEECCC
Confidence 24444555555589999999987
No 153
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=95.11 E-value=0.22 Score=38.45 Aligned_cols=86 Identities=16% Similarity=0.187 Sum_probs=51.5
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-----CCCC--CCCC-CCcCEEEEcCCCCCCCC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-----EFPD--DDDF-GSYDGYVITGSCNDAHG 73 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-----~~p~--~~~~-~~~d~iii~G~~~~~~~ 73 (126)
.+++|+|+-+...... .+ ....+.++|++.+.++.+...... .++. .+++ +.+|.+|..||-.
T Consensus 4 ~~~~v~iv~~~~~~~~-~e----~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG---- 74 (291)
T PRK02155 4 QFKTVALIGRYQTPGI-AE----PLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVVLGGDG---- 74 (291)
T ss_pred cCCEEEEEecCCCHHH-HH----HHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEEECCcH----
Confidence 4567999977655332 21 244567788888877655432110 0110 0122 3689999999932
Q ss_pred CchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 74 NDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 74 ~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
.+...++.+...++|+|||=.|+
T Consensus 75 ------t~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 75 ------TMLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred ------HHHHHHHHhcCCCCCEEEEcCCC
Confidence 24455555555689999998886
No 154
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=95.01 E-value=0.27 Score=38.29 Aligned_cols=84 Identities=15% Similarity=0.095 Sum_probs=50.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--CC--------------CCCC-CCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--PD--------------DDDF-GSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--p~--------------~~~~-~~~d~iii~ 65 (126)
|+||+|+.+....... .....+.++|++.|.++.+.......+ +. ...+ ++.|.+|+.
T Consensus 1 m~~igiv~n~~~~~~~-----~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~i 75 (305)
T PRK02649 1 MPKAGIIYNDGKPLAV-----RTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIVL 75 (305)
T ss_pred CCEEEEEEcCCCHHHH-----HHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEEE
Confidence 5679999776554321 134457788888888776543211000 00 0112 358999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 66 GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 66 G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
||-. .+....+.+...++|+|||=.|
T Consensus 76 GGDG----------TlL~aar~~~~~~iPilGIN~G 101 (305)
T PRK02649 76 GGDG----------TVLSAARQLAPCGIPLLTINTG 101 (305)
T ss_pred eCcH----------HHHHHHHHhcCCCCcEEEEeCC
Confidence 9932 3444555555568999999876
No 155
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.99 E-value=0.073 Score=36.67 Aligned_cols=44 Identities=27% Similarity=0.357 Sum_probs=29.8
Q ss_pred CCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 54 DDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 54 ~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
++++..|.+|+.||-+.+.-.. -.++.++++.+. .++|+.|+||
T Consensus 81 e~~n~aDvvVLlGGLaMP~~gv-~~d~~kel~ee~--~~kkliGvCf 124 (154)
T COG4090 81 EELNSADVVVLLGGLAMPKIGV-TPDDAKELLEEL--GNKKLIGVCF 124 (154)
T ss_pred cccccccEEEEEcccccCcCCC-CHHHHHHHHHhc--CCCceEEeeH
Confidence 4677899999999976553211 134455556543 4679999997
No 156
>PRK06756 flavodoxin; Provisional
Probab=94.92 E-value=0.38 Score=32.89 Aligned_cols=57 Identities=12% Similarity=0.310 Sum_probs=35.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
|+|++|+.....- +++. ....+.+.+++.|.+++++++.+. +...++.++|+|++.-
T Consensus 1 mmkv~IiY~S~tG-nTe~----vA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~d~vi~gs 57 (148)
T PRK06756 1 MSKLVMIFASMSG-NTEE----MADHIAGVIRETENEIEVIDIMDS--PEASILEQYDGIILGA 57 (148)
T ss_pred CceEEEEEECCCc-hHHH----HHHHHHHHHhhcCCeEEEeehhcc--CCHHHHhcCCeEEEEe
Confidence 4699999776442 2221 233455666667888888876432 2223577899987754
No 157
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.89 E-value=0.28 Score=38.03 Aligned_cols=87 Identities=17% Similarity=0.185 Sum_probs=50.5
Q ss_pred CCC-CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC-------CCCCC-CCcCEEEEcCCCCCC
Q 033165 1 MGG-KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP-------DDDDF-GSYDGYVITGSCNDA 71 (126)
Q Consensus 1 M~~-~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p-------~~~~~-~~~d~iii~G~~~~~ 71 (126)
|.. +||+|+.+..... ..+ ....+.++|++.+.++.+.......++ ....+ ..+|.+|..||-.
T Consensus 1 ~~~~~~v~iv~~~~k~~-a~e----~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG-- 73 (295)
T PRK01231 1 MPSFRNIGLIGRLGSSS-VVE----TLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIVVGGDG-- 73 (295)
T ss_pred CCCCCEEEEEecCCCHH-HHH----HHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEEEeCcH--
Confidence 544 4699987655533 222 233466778888888766542111111 00112 3588999999933
Q ss_pred CCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 72 HGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 72 ~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
.+....+.+...++|++||=.|+
T Consensus 74 --------t~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 74 --------SLLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred --------HHHHHHHHhcCCCCCEEEEeCCc
Confidence 23344455545689999998875
No 158
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.80 E-value=0.3 Score=37.82 Aligned_cols=84 Identities=18% Similarity=0.208 Sum_probs=50.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC----------CC---CCCCC-CCcCEEEEcCCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE----------FP---DDDDF-GSYDGYVITGSCN 69 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----------~p---~~~~~-~~~d~iii~G~~~ 69 (126)
|||+|+-+...... . .....+.++|++.|.++.+-...... .+ ..+.+ +.+|.+|..||-.
T Consensus 1 m~igii~~~~~~~~-~----~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG 75 (292)
T PRK01911 1 MKIAIFGQTYQESA-S----PYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVISIGGDG 75 (292)
T ss_pred CEEEEEeCCCCHHH-H----HHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEEECCcH
Confidence 57899876554332 1 23455777888888877654321100 00 00122 3589999999932
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
.+....+.+...++|+|||=.|.
T Consensus 76 ----------T~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 76 ----------TFLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred ----------HHHHHHHHhcCCCCCEEEEecCC
Confidence 24444555555689999998885
No 159
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=94.74 E-value=0.13 Score=40.54 Aligned_cols=51 Identities=22% Similarity=0.211 Sum_probs=38.0
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
...+|-+++.||-... ...-...+.++|++..+.+.++.|||-|.-+||++
T Consensus 74 ~~~~~~v~v~~g~~~~--~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 74 APPIDILPVCGGLGPE--RPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred cCcceEEEEecCCCcc--cccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 3458888886663322 11112558899999999999999999999999985
No 160
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.71 E-value=0.38 Score=36.92 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=50.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC---CCCCCC--CCC--CCcCEEEEcCCCCCCCCCch
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR---GEFPDD--DDF--GSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~~~p~~--~~~--~~~d~iii~G~~~~~~~~~~ 76 (126)
|||+|+-+....... .....+.++|++.+.++.+..... +..... ..+ .++|.+|..||-.
T Consensus 1 m~v~iv~~~~k~~~~-----~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG------- 68 (277)
T PRK03708 1 MRFGIVARRDKEEAL-----KLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIAIGGDG------- 68 (277)
T ss_pred CEEEEEecCCCHHHH-----HHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEEEeCcH-------
Confidence 589998665553322 134457788888898887753211 111110 011 3689999999932
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 77 WICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
.+.+.++ ....++|++||=.|.
T Consensus 69 ---TlL~a~~-~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 69 ---TILRIEH-KTKKDIPILGINMGT 90 (277)
T ss_pred ---HHHHHHH-hcCCCCeEEEEeCCC
Confidence 2444555 445689999998886
No 161
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.50 E-value=0.32 Score=37.55 Aligned_cols=84 Identities=20% Similarity=0.163 Sum_probs=51.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--C--CCCCC-CCcCEEEEcCCCCCCCCCchH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--P--DDDDF-GSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--p--~~~~~-~~~d~iii~G~~~~~~~~~~~ 77 (126)
++||+|+-+... . .. .....+.++|++.+.++.+-......+ + ..+++ .++|.+|..||-.
T Consensus 10 ~~~i~ii~~~~~-~-~~----~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG-------- 75 (287)
T PRK14077 10 IKKIGLVTRPNV-S-LD----KEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLISLGGDG-------- 75 (287)
T ss_pred CCEEEEEeCCcH-H-HH----HHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEEECCCH--------
Confidence 567999977553 2 22 234456778888887776543211111 1 00122 3689999999932
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 78 ICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
.+....+.+...++|+|||=.|.
T Consensus 76 --T~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 76 --TLISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred --HHHHHHHHhcCCCCcEEEEeCCC
Confidence 24445555555689999999887
No 162
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=94.45 E-value=0.57 Score=36.35 Aligned_cols=85 Identities=12% Similarity=0.208 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC----------CCC--CCCCC-CCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG----------EFP--DDDDF-GSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----------~~p--~~~~~-~~~d~iii~G~~~ 69 (126)
++||+|+-+..... .. .....+.++|++.|.++.+-..... ..+ ..+++ ...|.+|..||-.
T Consensus 5 ~~~i~ii~~~~~~~-~~----~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~lGGDG 79 (296)
T PRK04539 5 FHNIGIVTRPNTPD-IQ----DTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAVLGGDG 79 (296)
T ss_pred CCEEEEEecCCCHH-HH----HHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEEECCcH
Confidence 56799997755533 22 2345677888888887765421100 000 00122 3589999999932
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
.+....+.+...++|++||=.|.
T Consensus 80 ----------T~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 80 ----------TFLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred ----------HHHHHHHHhcccCCCEEEEecCC
Confidence 24444555545689999999886
No 163
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=94.15 E-value=0.2 Score=35.36 Aligned_cols=65 Identities=14% Similarity=0.095 Sum_probs=45.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC---CCCcCEEEEcCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD---FGSYDGYVITGSCND 70 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~---~~~~d~iii~G~~~~ 70 (126)
+.|++|+-.++... +.+++-..++..++++.|.++..+.+..++... ..+ .+++|.||.+||.+.
T Consensus 4 ~~rv~vit~~d~~~---~~~d~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVIttGGtg~ 75 (163)
T TIGR02667 4 PLRIAILTVSDTRT---EEDDTSGQYLVERLTEAGHRLADRAIVKDDIYQIRAQVSAWIADPDVQVILITGGTGF 75 (163)
T ss_pred ccEEEEEEEeCcCC---ccCCCcHHHHHHHHHHCCCeEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 57999998887642 245677778999999999988777655443210 011 246999999998643
No 164
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=93.96 E-value=0.14 Score=37.30 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=48.9
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHh-hCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLA-EEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
||||+-..... ...+.+-.-...+.++++ ..++++++..-. ..+ ..+.|++||.||+....... +-....+
T Consensus 1 kvLi~~g~~~~-~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~-~~~-~~~~L~~~Dvvv~~~~~~~~-----l~~~~~~ 72 (217)
T PF06283_consen 1 KVLIFSGGWSG-YRHDSIPAAKKALAQLLEESEGFEVTVTEDP-DDL-TPENLKGYDVVVFYNTGGDE-----LTDEQRA 72 (217)
T ss_dssp EEEEEES-SHH-HCSHHHHHHHHHHHHHHHHTTCEEEEECCSG-GCT-SHHCHCT-SEEEEE-SSCCG-----S-HHHHH
T ss_pred CEEEEeCCcCC-ccCccHHHHHHHHHHHhccCCCEEEEEEeCc-ccC-ChhHhcCCCEEEEECCCCCc-----CCHHHHH
Confidence 67777666210 000111123456777777 567777654421 112 22468999999998664211 2244556
Q ss_pred HHHHHHhcCCcEEEEchH
Q 033165 84 LLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G 101 (126)
.|++.++++++++|+..+
T Consensus 73 al~~~v~~Ggglv~lH~~ 90 (217)
T PF06283_consen 73 ALRDYVENGGGLVGLHGA 90 (217)
T ss_dssp HHHHHHHTT-EEEEEGGG
T ss_pred HHHHHHHcCCCEEEEccc
Confidence 677888899999999844
No 165
>PF00885 DMRL_synthase: 6,7-dimethyl-8-ribityllumazine synthase; InterPro: IPR002180 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase) catalyses the biosynthesis of riboflavin according to the reaction: 2 6,7-dimethyl-8-(1-D-ribityl)lumazine = riboflavin + 4-(1-D-ribitylamino)-5-amino-2,6-dihydroxypyrimidine. The biosynthesis of one riboflavin molecule requires one molecule of GTP and two molecules of ribulose 5-phosphate as substrates. The final step in the biosynthesis of the vitamin involves the dismutation of 6,7-dimethyl-8-ribityllumazine catalyzed by riboflavin synthase. The second product, 5-amino-6-ribitylamino-2,4(1H,3H)-pyrimidinedione, is recycled in the biosynthetic pathway by 6,7-dimethyl-8-ribityllumazine synthase []. N-[2,4-dioxo-6-d-ribitylamino-1,2,3,4-tetrahydropyrimidin-5-yl]oxalamic acid derivatives inhibit riboflavin synthase []. This family includes the beta chain of 6,7-dimethyl-8-ribityllumazine synthase 2.5.1.9 from EC. The family also includes a subfamily of distant archaebacterial proteins that may also have the same function for example O28856 from SWISSPROT.; GO: 0009231 riboflavin biosynthetic process, 0009349 riboflavin synthase complex; PDB: 2O6H_D 1C41_C 2OBX_H 1VSX_H 1VSW_3 3JV8_C 3MK3_r 3NQ4_G 2A58_A 2A57_D ....
Probab=93.78 E-value=0.38 Score=33.49 Aligned_cols=103 Identities=17% Similarity=0.250 Sum_probs=57.0
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC---eEEEEEcc-CCCCCCC----CCCCCcCEEEEcCC--CCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE---TWDVFHVA-RGEFPDD----DDFGSYDGYVITGS--CND 70 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~--~~~ 70 (126)
|+..||+|+..+........ ...-..+.|.+.|. +++++++. ..|+|-. ..-.+||++|..|- ...
T Consensus 1 ~~~~ri~IV~s~~n~~i~~~----ll~~a~~~l~~~g~~~~~i~~~~VPGa~ElP~a~~~l~~~~~~Davi~lG~VI~G~ 76 (144)
T PF00885_consen 1 MSGLRIAIVVSRFNEEITDR----LLEGALEELKRHGVAEENIEVIRVPGAFELPLAAKRLAESGRYDAVIALGCVIRGE 76 (144)
T ss_dssp -TTEEEEEEEESTTHHHHHH----HHHHHHHHHHHTTTTGGCEEEEEESSGGGHHHHHHHHHHCSTESEEEEEEEEE--S
T ss_pred CCCCEEEEEEEeccHHHHHH----HHHHHHHHHHHcCCCccceEEEEcCCHHHHHHHHHHHhcccCccEEEEeccccCCC
Confidence 88999999999887543221 12223456666776 77888764 2233321 01257999999983 222
Q ss_pred CCCCchHHHH--HHHHHHHHHhcCCcE-EEEc---hHHHHHHHH
Q 033165 71 AHGNDVWICK--LIALLKQLDSLRKKV-LGIC---FGHQVRAIT 108 (126)
Q Consensus 71 ~~~~~~~~~~--~~~~i~~~~~~~~Pv-lGIC---~G~Q~la~~ 108 (126)
. +...++.+ ...+++-.++.++|| +||- -=-|.+.++
T Consensus 77 T-~H~~~v~~~v~~gl~~lsl~~~~PV~~gvlt~~~~eqa~~R~ 119 (144)
T PF00885_consen 77 T-DHFEYVANAVSRGLMDLSLEYGIPVIFGVLTPDTEEQALERA 119 (144)
T ss_dssp S-THHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSHHHHHHHC
T ss_pred c-hHHHHHHHHHHHHHHHHhccCCccEEEEecCCCCHHHHHHHh
Confidence 1 22233322 344555557778995 3432 334555554
No 166
>PRK01215 competence damage-inducible protein A; Provisional
Probab=93.67 E-value=0.16 Score=38.77 Aligned_cols=72 Identities=14% Similarity=0.044 Sum_probs=46.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHG 73 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~ 73 (126)
|.++|++|+-.+..-- .-+-++....++.+.+.+.|.++..+.+..++.... .-++.+|.||++||-....+
T Consensus 1 ~~~~~v~Ii~~GdEll-~G~i~dtn~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVIttGG~g~t~d 77 (264)
T PRK01215 1 MDKWFAWIITIGNELL-IGRTVNTNASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDRADVVVSTGGLGPTYD 77 (264)
T ss_pred CCCCEEEEEEEChhcc-CCeEEEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEeCCCcCChh
Confidence 8899999999987532 111234566788899999999887665443332110 12346899999999654433
No 167
>PRK09271 flavodoxin; Provisional
Probab=93.54 E-value=1.7 Score=30.20 Aligned_cols=59 Identities=12% Similarity=0.062 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC-CCCCCCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF-PDDDDFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-p~~~~~~~~d~iii~G~ 67 (126)
||++|+.....- ++++ ....+.+.++..|.+++++++...++ +...++.++|.|+|.-.
T Consensus 1 mkv~IvY~S~tG-nTe~----~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~ 60 (160)
T PRK09271 1 MRILLAYASLSG-NTRE----VAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTW 60 (160)
T ss_pred CeEEEEEEcCCc-hHHH----HHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECc
Confidence 478888765432 2221 23446667777788888776543221 11224567898888654
No 168
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=93.34 E-value=0.76 Score=34.42 Aligned_cols=42 Identities=24% Similarity=0.218 Sum_probs=29.5
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHH----HHHHHHHhcCCcEEEEchHHH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLI----ALLKQLDSLRKKVLGICFGHQ 103 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~----~~i~~~~~~~~PvlGIC~G~Q 103 (126)
+.-..+|+|||..-+| .+.+. +.|...++++--.||||.|.-
T Consensus 48 ~~T~lLV~pGGaDlpY-----~~~l~g~g~a~i~~yvk~GG~fLGiCAG~Y 93 (253)
T COG4285 48 ETTLLLVFPGGADLPY-----VQVLQGLGTARIKNYVKEGGNFLGICAGGY 93 (253)
T ss_pred hceEEEEecCCCCchH-----HHHhcchhhhhHHHHHhcCCeEEEEecccc
Confidence 4567888999965443 33332 446677788999999999864
No 169
>PRK06703 flavodoxin; Provisional
Probab=93.01 E-value=1.2 Score=30.51 Aligned_cols=56 Identities=9% Similarity=0.108 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
|+|++|+.....- +.+. ....+.+.++..|.+++++++.+.+ ..++.++|.|++.-
T Consensus 1 mmkv~IiY~S~tG-nT~~----iA~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~d~viigs 56 (151)
T PRK06703 1 MAKILIAYASMSG-NTED----IADLIKVSLDAFDHEVVLQEMDGMD---AEELLAYDGIILGS 56 (151)
T ss_pred CCeEEEEEECCCc-hHHH----HHHHHHHHHHhcCCceEEEehhhCC---HHHHhcCCcEEEEE
Confidence 4588888775442 2111 2334555566678888888764321 12577899888843
No 170
>PLN02929 NADH kinase
Probab=92.99 E-value=0.59 Score=36.42 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 25 YFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
....+.++|++.|.++..+. ..++ .....+.|.+|..||-. .+....+.+ ..++|++||=.|
T Consensus 35 ~~~~~~~~L~~~gi~~~~v~--r~~~--~~~~~~~Dlvi~lGGDG----------T~L~aa~~~-~~~iPvlGIN~G 96 (301)
T PLN02929 35 TVNFCKDILQQKSVDWECVL--RNEL--SQPIRDVDLVVAVGGDG----------TLLQASHFL-DDSIPVLGVNSD 96 (301)
T ss_pred HHHHHHHHHHHcCCEEEEee--cccc--ccccCCCCEEEEECCcH----------HHHHHHHHc-CCCCcEEEEECC
Confidence 34457788889999886543 2222 12457899999999932 233344445 568999999888
No 171
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=92.76 E-value=0.58 Score=32.47 Aligned_cols=66 Identities=15% Similarity=0.103 Sum_probs=42.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-C----CCC--CcCEEEEcCCCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-D----DFG--SYDGYVITGSCND 70 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~----~~~--~~d~iii~G~~~~ 70 (126)
.|++|+..+.+... -+.+++...++.+++++.|.++..+.+..++.... + .++ .+|.||.+||.+.
T Consensus 1 ~~~~ii~~~~e~~~-g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~~~DlVittGG~s~ 73 (152)
T cd00886 1 LRAAVLTVSDTRSA-GEAEDRSGPALVELLEEAGHEVVAYEIVPDDKDEIREALIEWADEDGVDLILTTGGTGL 73 (152)
T ss_pred CEEEEEEEcCcccC-CCCccchHHHHHHHHHHcCCeeeeEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCcCC
Confidence 36788777665432 12346677789999999999887766544431110 0 123 6999999998543
No 172
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=92.48 E-value=0.29 Score=30.83 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=26.2
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA 71 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~ 71 (126)
.+.++|++.|+++.-.. . ..++..+|++|++|-..+.
T Consensus 12 ~v~~~L~~~GyeVv~l~--~-----~~~~~~~daiVvtG~~~n~ 48 (80)
T PF03698_consen 12 NVKEALREKGYEVVDLE--N-----EQDLQNVDAIVVTGQDTNM 48 (80)
T ss_pred HHHHHHHHCCCEEEecC--C-----ccccCCcCEEEEECCCccc
Confidence 37889999998765332 1 1246899999999976443
No 173
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=92.39 E-value=1.3 Score=37.30 Aligned_cols=85 Identities=13% Similarity=0.182 Sum_probs=50.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC--------CCCCCCCcCEEEEcCCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP--------DDDDFGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p--------~~~~~~~~d~iii~G~~~~~~~~ 74 (126)
.+||+|+.+...... . .....+.++|++.+.++.+-......+. ..++..+.|.+|+.||-.
T Consensus 290 ~~~i~iv~~~~~~~~-~----~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~lGGDG----- 359 (569)
T PRK14076 290 PTKFGIVSRIDNEEA-I----NLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIISIGGDG----- 359 (569)
T ss_pred CcEEEEEcCCCCHHH-H----HHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEEECCcH-----
Confidence 368999877554332 2 1344567778778877665432111000 011244689999999932
Q ss_pred chHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 75 DVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 75 ~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
.+....+.+...++|+|||=.|.
T Consensus 360 -----T~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 360 -----TVLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred -----HHHHHHHHhcCCCCCEEEEcCCC
Confidence 24444555555689999998875
No 174
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=91.53 E-value=1.5 Score=33.60 Aligned_cols=62 Identities=15% Similarity=-0.026 Sum_probs=36.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI 64 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii 64 (126)
|+++||+||-.+...+.-.+-. =...+.+.|++.|.++..+.+...++...-.-.++|.++.
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~--s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l~~~~~d~vf~ 62 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLK--SGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFV 62 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHH--HHHHHHHHHHHcCCEEEEEcCCchhHHHHhhccCCCEEEE
Confidence 8899999998888775322111 1235668888889988776654222111001135776655
No 175
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=91.50 E-value=1.5 Score=31.59 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=34.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCC------------------CCCCCCcCEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPD------------------DDDFGSYDGYV 63 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~------------------~~~~~~~d~ii 63 (126)
|+||+|+.....- +.+. -...+.+.+++ .|.+++++++.+. .|. .+++.++|+||
T Consensus 1 M~kilIvy~S~~G-~T~~----lA~~ia~g~~~~~G~ev~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii 74 (200)
T PRK03767 1 MAKVLVLYYSMYG-HIET----MAEAVAEGAREVAGAEVTIKRVPET-VPEEVAKKAGGKTDQAAPVATPDELADYDAII 74 (200)
T ss_pred CCeEEEEEcCCCC-HHHH----HHHHHHHHHhhcCCcEEEEEecccc-CCHHHHHhcCCCcccCCCccCHHHHHhCCEEE
Confidence 3599999987642 2111 12234445555 7889998887521 211 23567899877
Q ss_pred EcC
Q 033165 64 ITG 66 (126)
Q Consensus 64 i~G 66 (126)
+.-
T Consensus 75 ~gs 77 (200)
T PRK03767 75 FGT 77 (200)
T ss_pred EEe
Confidence 653
No 176
>PRK05569 flavodoxin; Provisional
Probab=91.50 E-value=2.3 Score=28.60 Aligned_cols=57 Identities=18% Similarity=0.157 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
|.|++|+.....- +++. -...+.+-+++.|.+++++++.+.+ ..++.++|+|++.-.
T Consensus 1 m~ki~iiY~S~tG-nT~~----iA~~i~~~~~~~g~~v~~~~~~~~~---~~~~~~~d~iilgsP 57 (141)
T PRK05569 1 MKKVSIIYWSCGG-NVEV----LANTIADGAKEAGAEVTIKHVADAK---VEDVLEADAVAFGSP 57 (141)
T ss_pred CCeEEEEEECCCC-HHHH----HHHHHHHHHHhCCCeEEEEECCcCC---HHHHhhCCEEEEECC
Confidence 4588888876542 2111 1122334444568888888765322 125678999887533
No 177
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=91.13 E-value=2.2 Score=31.63 Aligned_cols=83 Identities=17% Similarity=0.127 Sum_probs=50.3
Q ss_pred hHHHHhh-CCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCC
Q 033165 16 EYVKKKY-GGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRK 93 (126)
Q Consensus 16 ~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~ 93 (126)
+.+++-| +.....+..+|++.|+++++....+.+ -..++.|.+||.||.-+-... +. +..+..+-+.+.++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~--~~--l~~eq~~~l~~~V~~Gg 89 (215)
T cd03142 14 EAVAALYPDGMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAH--DE--VKDEIVERVHRRVLDGM 89 (215)
T ss_pred hhhHhhCcchHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCc--Cc--CCHHHHHHHHHHHHcCC
Confidence 3455555 345567888999999998866544322 012345889999998544321 11 11234445666777888
Q ss_pred cEEEEchHH
Q 033165 94 KVLGICFGH 102 (126)
Q Consensus 94 PvlGIC~G~ 102 (126)
=++|+=.|+
T Consensus 90 Glv~lHsg~ 98 (215)
T cd03142 90 GLIVLHSGH 98 (215)
T ss_pred CEEEECCCc
Confidence 888876554
No 178
>PRK07308 flavodoxin; Validated
Probab=90.99 E-value=1.7 Score=29.63 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=32.0
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSC 68 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~ 68 (126)
|+.|+..... -++++ ....+.+.+++.|.+++++++...+ .+++.++|.|++ |++
T Consensus 3 ~~~IvY~S~t-GnTe~----iA~~ia~~l~~~g~~~~~~~~~~~~---~~~l~~~d~vi~-g~~ 57 (146)
T PRK07308 3 LAKIVYASMT-GNTEE----IADIVADKLRELGHDVDVDECTTVD---ASDFEDADIAIV-ATY 57 (146)
T ss_pred eEEEEEECCC-chHHH----HHHHHHHHHHhCCCceEEEecccCC---HhHhccCCEEEE-EeC
Confidence 5666654332 22221 3344566667778888877754321 235678999988 554
No 179
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=90.86 E-value=2.8 Score=26.91 Aligned_cols=80 Identities=15% Similarity=0.103 Sum_probs=44.7
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
|.++||+++-...-.... ....+.+.+++.|.++++......+++. ...++|.|+++.- +..
T Consensus 1 ~~~~~ILl~C~~G~sSS~------l~~k~~~~~~~~gi~~~v~a~~~~~~~~--~~~~~Dvill~pq----------i~~ 62 (95)
T TIGR00853 1 MNETNILLLCAAGMSTSL------LVNKMNKAAEEYGVPVKIAAGSYGAAGE--KLDDADVVLLAPQ----------VAY 62 (95)
T ss_pred CCccEEEEECCCchhHHH------HHHHHHHHHHHCCCcEEEEEecHHHHHh--hcCCCCEEEECch----------HHH
Confidence 567788877554433221 3345677888899988877654333322 3467896665421 122
Q ss_pred HHHHHHHHHh-cCCcEEEE
Q 033165 81 LIALLKQLDS-LRKKVLGI 98 (126)
Q Consensus 81 ~~~~i~~~~~-~~~PvlGI 98 (126)
..+-+++..+ .++|+.-|
T Consensus 63 ~~~~i~~~~~~~~ipv~~I 81 (95)
T TIGR00853 63 MLPDLKKETDKKGIPVEVI 81 (95)
T ss_pred HHHHHHHHhhhcCCCEEEe
Confidence 2333444333 46898654
No 180
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=90.70 E-value=0.98 Score=32.94 Aligned_cols=68 Identities=12% Similarity=-0.009 Sum_probs=40.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe---EEEEEccCCCCCC----CCC-C--CCcCEEEEcCCCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET---WDVFHVARGEFPD----DDD-F--GSYDGYVITGSCND 70 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~~~~~p~----~~~-~--~~~d~iii~G~~~~ 70 (126)
|.++|++||-.+..... -..++.....+..++++.|.+ +.. .+..++... ... + +++|.||.+||..-
T Consensus 1 ~~~~~~aIItvSd~~~~-G~i~D~ng~~L~~~L~~~G~~g~~v~~-~iVpDd~~~I~~aL~~a~~~~~~DlIITTGGtg~ 78 (193)
T PRK09417 1 MDTLKIGLVSISDRASS-GVYEDKGIPALEEWLASALTSPFEIET-RLIPDEQDLIEQTLIELVDEMGCDLVLTTGGTGP 78 (193)
T ss_pred CCCcEEEEEEEcCcCCC-CceeechHHHHHHHHHHcCCCCceEEE-EECCCCHHHHHHHHHHHhhcCCCCEEEECCCCCC
Confidence 78899999988775321 112455667888889888643 322 222222110 001 2 36999999999543
No 181
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=90.56 E-value=0.19 Score=35.18 Aligned_cols=42 Identities=29% Similarity=0.390 Sum_probs=27.4
Q ss_pred CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
+++ .|.+|+.||-+.+.-.. -.++..+++.++. ...+.||||
T Consensus 78 ~~~-~D~vVlmGGLAMP~~~v-~~e~v~~li~ki~--~~~iiGiCF 119 (147)
T PF09897_consen 78 DPH-PDVVVLMGGLAMPKSGV-TPEDVNELIKKIS--PKKIIGICF 119 (147)
T ss_dssp -S--EEEEEEEGGGGSTTTS---HHHHHHHHHHHE--EEEEEEEEE
T ss_pred CCC-CCEEEEEcccccCCCCC-CHHHHHHHHHHhC--cCCEEEEeh
Confidence 344 99999999976653321 2455667777764 344999997
No 182
>PRK09267 flavodoxin FldA; Validated
Probab=90.51 E-value=2.4 Score=29.52 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=30.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-C-CCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-E-GETWDVFHVARGEFPDDDDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~-g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~ 69 (126)
|||++|+.....- .+..+.+.+.+ . ..+++++++.+. ...++.+||.||+..+..
T Consensus 1 mmki~IiY~S~tG---------nT~~vA~~Ia~~l~~~~~~~~~~~~~---~~~~l~~~d~vi~g~pt~ 57 (169)
T PRK09267 1 MAKIGIFFGSDTG---------NTEDIAKMIQKKLGKDVADVVDIAKA---SKEDFEAYDLLILGIPTW 57 (169)
T ss_pred CCeEEEEEECCCC---------hHHHHHHHHHHHhCCCceEEEEhhhC---CHhhHhhCCEEEEEecCc
Confidence 4589999776542 23334444422 1 235566665432 123577899987765543
No 183
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=90.37 E-value=0.16 Score=34.69 Aligned_cols=94 Identities=16% Similarity=0.152 Sum_probs=48.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC------------------CCCCCCcCEEEEc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD------------------DDDFGSYDGYVIT 65 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~------------------~~~~~~~d~iii~ 65 (126)
|||++|........... .....+.+.+++.|.+++++++.+..+|. .+.+..+|++|+.
T Consensus 1 Mkilii~gS~r~~~~t~---~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~ 77 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTR---KLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFA 77 (152)
T ss_dssp -EEEEEESSSSTTSHHH---HHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEECcCCCCCHHH---HHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEe
Confidence 69999988774321111 12334455556678999999986431110 0134578998885
Q ss_pred CCCCCCCCCchHHHHHHHHHH---HHHhcCCcEEEEchH
Q 033165 66 GSCNDAHGNDVWICKLIALLK---QLDSLRKKVLGICFG 101 (126)
Q Consensus 66 G~~~~~~~~~~~~~~~~~~i~---~~~~~~~PvlGIC~G 101 (126)
---. ...-.+-...+.+.+. .-.-.++|++.++.|
T Consensus 78 sP~y-~~~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~ 115 (152)
T PF03358_consen 78 SPVY-NGSVSGQLKNFLDRLSCWFRRALRGKPVAIIAVG 115 (152)
T ss_dssp EEEB-TTBE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEE
T ss_pred ecEE-cCcCChhhhHHHHHhccccccccCCCEEEEEEEe
Confidence 2211 1111122344444442 111148899888654
No 184
>PRK03094 hypothetical protein; Provisional
Probab=89.97 E-value=0.98 Score=28.43 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=25.3
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA 71 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~ 71 (126)
+.+.|++.|.++.-.+ . ..+...+|++|++|-..+.
T Consensus 13 i~~~L~~~GYeVv~l~--~-----~~~~~~~Da~VitG~d~n~ 48 (80)
T PRK03094 13 VQQALKQKGYEVVQLR--S-----EQDAQGCDCCVVTGQDSNV 48 (80)
T ss_pred HHHHHHHCCCEEEecC--c-----ccccCCcCEEEEeCCCcce
Confidence 7889999998765332 1 1135789999999975443
No 185
>PRK03673 hypothetical protein; Provisional
Probab=89.96 E-value=0.92 Score=36.66 Aligned_cols=71 Identities=6% Similarity=0.025 Sum_probs=46.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~~ 74 (126)
|+|+.|+-.++.--. -+-+++-..++.+.|...|.++.......|+.... ..+..+|.||++||-....||
T Consensus 1 ~~~v~Iis~GdEll~-G~i~dtN~~~la~~L~~~G~~v~~~~~v~D~~~~i~~~l~~a~~~~DlVI~tGGlGpt~dD 76 (396)
T PRK03673 1 MLRVEMLSTGDEVLH-GQIVDTNAAWLADFFFHQGLPLSRRNTVGDNLDALVAILRERSQHADVLIVNGGLGPTSDD 76 (396)
T ss_pred CCEEEEEEecccCCC-CeEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhccCCEEEEcCCCCCCCcc
Confidence 578999988865321 12234567788999999999886655443321110 124579999999996655444
No 186
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=89.77 E-value=4.1 Score=26.67 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=47.0
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIAL 84 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~ 84 (126)
||.++-.+...... ..+...|...|..+..+............+.+-|.+|+..-.... .+..+.
T Consensus 2 ~I~i~G~G~S~~~a--------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vi~iS~sG~t-------~~~~~~ 66 (128)
T cd05014 2 KVVVTGVGKSGHIA--------RKIAATLSSTGTPAFFLHPTEALHGDLGMVTPGDVVIAISNSGET-------DELLNL 66 (128)
T ss_pred eEEEEeCcHhHHHH--------HHHHHHhhcCCCceEEcccchhhccccCcCCCCCEEEEEeCCCCC-------HHHHHH
Confidence 55666555443221 235555566677766554321111111234556666665432221 345667
Q ss_pred HHHHHhcCCcEEEEchHH-HHHHH
Q 033165 85 LKQLDSLRKKVLGICFGH-QVRAI 107 (126)
Q Consensus 85 i~~~~~~~~PvlGIC~G~-Q~la~ 107 (126)
++.+.+++.|+++|+-.. --|++
T Consensus 67 ~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 67 LPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred HHHHHHCCCeEEEEeCCCCCchhh
Confidence 777778899999999743 33444
No 187
>PRK06455 riboflavin synthase; Provisional
Probab=89.76 E-value=2.6 Score=29.81 Aligned_cols=88 Identities=11% Similarity=0.052 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh--CCCeEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE--EGETWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~~~~~~ 75 (126)
|+||+|+.+........ .-..+.|++ .+.+++++++. ..++|-. ..-..||++|..|..... +..
T Consensus 1 ~~kigIV~s~fn~~~L~-------~gAi~~L~~~g~~~~I~v~~VPGa~ELP~aakkL~~~~~yDaVIaLG~VG~t-~h~ 72 (155)
T PRK06455 1 MMKIGIADTTFARVDMG-------SAAIDELRKLDPSAKIIRYTVPGIKDLPVAAKKLIEEEGCDIVMALGMPGPT-EKD 72 (155)
T ss_pred CcEEEEEEEecchHHHH-------HHHHHHHHhcCCCCceEEEECCCHHHHHHHHHHHHhcCCCCEEEEecceecc-Ccc
Confidence 67999999877653211 123355566 34667777653 1233321 012579999999986332 222
Q ss_pred hHHHH--HHHHHHHHHhcCCcEEEE
Q 033165 76 VWICK--LIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~--~~~~i~~~~~~~~PvlGI 98 (126)
.++.. ...+++-.++.++||.-+
T Consensus 73 d~Va~~vS~GL~~lsL~t~~PVi~v 97 (155)
T PRK06455 73 KYCAHEASIGLIMAQLMTNKHIIEV 97 (155)
T ss_pred hhHHHHHHHHHHHHHhhhCCCEEEE
Confidence 33332 334556566788998765
No 188
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=89.75 E-value=1.7 Score=33.01 Aligned_cols=62 Identities=15% Similarity=-0.048 Sum_probs=38.5
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
|.++||+|+-.+...+...+-+ -...+.++|++.|.++..+.+........ ...++|.+++.
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~--s~~~i~~al~~~g~~v~~i~~~~~~~~~~-~~~~~D~v~~~ 63 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLN--SGAAVLAALREAGYDAHPIDPGEDIAAQL-KELGFDRVFNA 63 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHH--hHHHHHHHHHHCCCEEEEEecCcchHHHh-ccCCCCEEEEe
Confidence 5567999998766554211110 23567889999999998887543211111 12478988875
No 189
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=89.69 E-value=0.47 Score=32.64 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=43.0
Q ss_pred CeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCC
Q 033165 4 KKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCND 70 (126)
Q Consensus 4 ~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~ 70 (126)
+|++|+-++..--. .-+.+++...++.++|++.|.++..+.+..++.... ..++.+|.||.+||...
T Consensus 1 prv~ii~tGdEl~~~~~~~~~g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~DliIttGG~g~ 78 (144)
T TIGR00177 1 PRVAVISTGDELVEPGQPLEPGQIYDSNGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDEADVVLTTGGTGV 78 (144)
T ss_pred CEEEEEEcCcccccCCCCCCCCeEEeCcHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 47788877664321 112356677789999999999888776554431110 11357999999998544
No 190
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=89.55 E-value=1.6 Score=33.36 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=42.3
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
||++|+.+ .. +...+ ....+..+|++.|.++. .+++|.+|+.||-. .+..
T Consensus 1 M~i~Ii~~-~~-~~~~~----~~~~l~~~l~~~g~~~~--------------~~~~Dlvi~iGGDG----------T~L~ 50 (265)
T PRK04885 1 MKVAIISN-GD-PKSKR----VASKLKKYLKDFGFILD--------------EKNPDIVISVGGDG----------TLLS 50 (265)
T ss_pred CEEEEEeC-CC-HHHHH----HHHHHHHHHHHcCCccC--------------CcCCCEEEEECCcH----------HHHH
Confidence 47899866 33 22221 23446667777676511 13579999999932 2444
Q ss_pred HHHHHHh--cCCcEEEEchHH
Q 033165 84 LLKQLDS--LRKKVLGICFGH 102 (126)
Q Consensus 84 ~i~~~~~--~~~PvlGIC~G~ 102 (126)
..+.+.. .++|++||=.|.
T Consensus 51 a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 51 AFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred HHHHhcccCCCCeEEEEeCCC
Confidence 4555444 589999998875
No 191
>PRK11914 diacylglycerol kinase; Reviewed
Probab=89.52 E-value=1.4 Score=33.77 Aligned_cols=65 Identities=12% Similarity=-0.045 Sum_probs=37.4
Q ss_pred CCCCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCCC---CCCCCCcCEEEEcCCCC
Q 033165 1 MGGKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFPD---DDDFGSYDGYVITGSCN 69 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p~---~~~~~~~d~iii~G~~~ 69 (126)
|+|+|++++.+...-. ...+ ....+.+.|++.+.+++++.... ++... ....+.+|.||+.||-.
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~----~~~~~~~~l~~~g~~~~~~~t~~~~~~~~~a~~~~~~~~d~vvv~GGDG 75 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPH----AAERAIARLHHRGVDVVEIVGTDAHDARHLVAAALAKGTDALVVVGGDG 75 (306)
T ss_pred CCCceEEEEECCCCCCCcHHH----HHHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHhcCCCEEEEECCch
Confidence 7889999998855321 1111 12245677888888887655321 11000 00125689999999944
No 192
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=88.76 E-value=0.89 Score=33.58 Aligned_cols=77 Identities=14% Similarity=0.262 Sum_probs=44.5
Q ss_pred HHHHHHHhhCCCeEEEEEccC--CCCCC-CCCCCCcCEEEEcCCCCCCC--CCchH-----HHHHHHHHHHHHhcCC--c
Q 033165 27 GVFVRMLAEEGETWDVFHVAR--GEFPD-DDDFGSYDGYVITGSCNDAH--GNDVW-----ICKLIALLKQLDSLRK--K 94 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~--~~~p~-~~~~~~~d~iii~G~~~~~~--~~~~~-----~~~~~~~i~~~~~~~~--P 94 (126)
+.+...|+..+.+++...... ..+|. .+.++.||+|||+--.++.. ....| ..+..++|++.++.+- -
T Consensus 35 d~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLL 114 (254)
T COG5426 35 DPLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLL 114 (254)
T ss_pred hHHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEE
Confidence 467778887788887665431 22443 35678999999984322321 11222 2446678888887653 3
Q ss_pred EEEEchHHH
Q 033165 95 VLGICFGHQ 103 (126)
Q Consensus 95 vlGIC~G~Q 103 (126)
++|=-+.+|
T Consensus 115 MiGGY~SF~ 123 (254)
T COG5426 115 MIGGYLSFQ 123 (254)
T ss_pred EEccEEEEe
Confidence 333334444
No 193
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=88.33 E-value=2.1 Score=30.44 Aligned_cols=69 Identities=13% Similarity=0.042 Sum_probs=40.5
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~~ 74 (126)
|++|+-.+..--. -+.+++...++.++|.+.|.++..+.+..++.... .-++.+|.||.+||-....+|
T Consensus 1 ~v~Ii~~GdEl~~-G~i~d~n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~~~dlVIttGG~G~t~~D 74 (170)
T cd00885 1 TAEIIAIGDELLS-GQIVDTNAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASERADLVITTGGLGPTHDD 74 (170)
T ss_pred CEEEEEECccccC-CeEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCEEEECCCCCCCCCC
Confidence 4566666553211 11234566788899999999886655443321100 112578999999996554443
No 194
>PRK09739 hypothetical protein; Provisional
Probab=87.98 E-value=1.5 Score=31.49 Aligned_cols=40 Identities=10% Similarity=0.144 Sum_probs=28.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHH----HHHhhCCCeEEEEEccC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFV----RMLAEEGETWDVFHVAR 47 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~l~~~g~~~~~~~~~~ 47 (126)
|.|+||++|...+.. ++++..+. +.+++.+.+++++++.+
T Consensus 1 ~~mmkiliI~~sp~~-------~s~s~~l~~~~~~~~~~~g~~v~~~dL~~ 44 (199)
T PRK09739 1 MQSMRIYLVWAHPRH-------DSLTAKVAEAIHQRAQERGHQVEELDLYR 44 (199)
T ss_pred CCCceEEEEEcCCCC-------CCcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 889999999998754 24444444 44455688888888764
No 195
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.84 E-value=3.2 Score=31.82 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=41.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC----CCCCCCCcCEEEEcCCCCCCCCCchHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP----DDDDFGSYDGYVITGSCNDAHGNDVWIC 79 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p----~~~~~~~~d~iii~G~~~~~~~~~~~~~ 79 (126)
|||+|+-+...... . +....+.+++ +.+.++.+-......++ ..+.. +.|.+|..||-..
T Consensus 1 m~i~iv~~~~~~~~-~----~~~~~i~~~l-~~g~~~~~~~~~~~~~~~~~~~~~~~-~~D~vi~lGGDGT--------- 64 (271)
T PRK01185 1 MKVAFVIRKDCKRC-I----KIAKSIIELL-PPDWEIIYEMEAAKALGMDGLDIEEI-NADVIITIGGDGT--------- 64 (271)
T ss_pred CEEEEEecCCCHHH-H----HHHHHHHHHH-hcCCEEEEechhhhhcCcccCccccc-CCCEEEEEcCcHH---------
Confidence 57899877554332 2 2344566667 45666544321111111 11122 6899999999322
Q ss_pred HHHHHHHHHHhcCCcEEEEchH
Q 033165 80 KLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC~G 101 (126)
+ ++.+.....|++||=.|
T Consensus 65 -~---L~a~~~~~~PilGIN~G 82 (271)
T PRK01185 65 -I---LRTLQRAKGPILGINMG 82 (271)
T ss_pred -H---HHHHHHcCCCEEEEECC
Confidence 2 22222235699999887
No 196
>PRK05568 flavodoxin; Provisional
Probab=87.62 E-value=6.5 Score=26.31 Aligned_cols=57 Identities=14% Similarity=0.182 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
|+|++|+.....- +.+. ....+.+.+++.|.+++++++.+.+ ..++.++|+|++.-.
T Consensus 1 m~~~~IvY~S~~G-nT~~----~a~~i~~~~~~~g~~v~~~~~~~~~---~~~~~~~d~iilgsp 57 (142)
T PRK05568 1 MKKINIIYWSGTG-NTEA----MANLIAEGAKENGAEVKLLNVSEAS---VDDVKGADVVALGSP 57 (142)
T ss_pred CCeEEEEEECCCc-hHHH----HHHHHHHHHHHCCCeEEEEECCCCC---HHHHHhCCEEEEECC
Confidence 4578888765442 2221 1223444455668888888765322 125788998777544
No 197
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.50 E-value=5.5 Score=30.12 Aligned_cols=72 Identities=13% Similarity=0.171 Sum_probs=42.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
||++|...+... . ....+..++.+.|.++.... ... + ...+.|.+|..||-. .+..
T Consensus 1 m~~~~~~~~~~~-~-------~~~~~~~~l~~~~~~~~~~~--~~~-~---~~~~~d~vi~iGGDG----------T~L~ 56 (256)
T PRK14075 1 MKLGIFYREEKE-K-------EAKFLKEKISKEHEVVEFCE--ASA-S---GKVTADLIIVVGGDG----------TVLK 56 (256)
T ss_pred CEEEEEeCccHH-H-------HHHHHHHHHHHcCCeeEeec--ccc-c---ccCCCCEEEEECCcH----------HHHH
Confidence 578888444422 1 23346677777776544221 111 1 235789999999932 2223
Q ss_pred HHHHHHhcCCcEEEEchHH
Q 033165 84 LLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~ 102 (126)
..+.+ ++|++||=.|.
T Consensus 57 a~~~~---~~Pilgin~G~ 72 (256)
T PRK14075 57 AAKKV---GTPLVGFKAGR 72 (256)
T ss_pred HHHHc---CCCEEEEeCCC
Confidence 33333 89999998775
No 198
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=87.00 E-value=7.3 Score=26.27 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=29.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEE-EEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWD-VFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
||++|+.....- +.++ ....+.+.++..+.+++ ++++.+-. ....++.+||.|++.-+
T Consensus 1 M~i~IiY~S~tG-nTe~----iA~~ia~~l~~~g~~v~~~~~~~~~~-~~~~~~~~~d~iilgs~ 59 (140)
T TIGR01754 1 MRILLAYLSLSG-NTEE----VAFMIQDYLQKDGHEVDILHRIGTLA-DAPLDPENYDLVFLGTW 59 (140)
T ss_pred CeEEEEEECCCC-hHHH----HHHHHHHHHhhCCeeEEecccccccc-cCcCChhhCCEEEEEcC
Confidence 478888765432 1111 23345555666677766 33332101 11125678998877654
No 199
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.78 E-value=3.4 Score=31.52 Aligned_cols=36 Identities=22% Similarity=0.286 Sum_probs=26.0
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
+++|.+|..||-. .+...++.+...++|++||=.|.
T Consensus 32 ~~~D~vi~iGGDG----------T~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 32 DGADYLFVLGGDG----------FFVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCCEEEEECCcH----------HHHHHHHHhcCCCCcEEEEecCC
Confidence 4589999999932 24445555555789999998874
No 200
>PRK13054 lipid kinase; Reviewed
Probab=86.77 E-value=3.3 Score=31.72 Aligned_cols=63 Identities=19% Similarity=0.117 Sum_probs=36.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCCC---CCCCCCcCEEEEcCCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFPD---DDDFGSYDGYVITGSCN 69 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p~---~~~~~~~d~iii~G~~~ 69 (126)
|.|+|++++.+..... .+ .+.. +.+.|++.+.+++++.... ++... ....+.+|.||+.||-.
T Consensus 1 ~~~~~~~~i~N~~~~~--~~---~~~~-~~~~l~~~g~~~~v~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDG 67 (300)
T PRK13054 1 MTFPKSLLILNGKSAG--NE---ELRE-AVGLLREEGHTLHVRVTWEKGDAARYVEEALALGVATVIAGGGDG 67 (300)
T ss_pred CCCceEEEEECCCccc--hH---HHHH-HHHHHHHcCCEEEEEEecCCCcHHHHHHHHHHcCCCEEEEECCcc
Confidence 8899999998844321 11 1233 4556888888877654321 11100 00124689999999954
No 201
>PRK00061 ribH 6,7-dimethyl-8-ribityllumazine synthase; Provisional
Probab=86.63 E-value=2.4 Score=29.87 Aligned_cols=91 Identities=16% Similarity=0.159 Sum_probs=50.1
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC---CeEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCCC-C
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG---ETWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCNDA-H 72 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~~-~ 72 (126)
...||+|+..+....-+..- .+-..+.|.+.| .+++++++. ..|+|.. ..-.+||++|..|.--.- .
T Consensus 11 ~~~riaIV~s~~n~~i~~~l----~~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavIalG~VIrG~T 86 (154)
T PRK00061 11 KGLRIGIVVARFNDFITDAL----LEGALDALKRHGVSEENIDVVRVPGAFEIPLAAKKLAESGKYDAVIALGAVIRGET 86 (154)
T ss_pred CCCEEEEEEecCcHHHHHHH----HHHHHHHHHHcCCCccceEEEECCCHHHHHHHHHHHHHcCCCCEEEEEeeEEcCCC
Confidence 45799999998876532221 122345566667 566777653 1223321 012579999999864211 1
Q ss_pred CCchHHHH--HHHHHHHHHhcCCcEE
Q 033165 73 GNDVWICK--LIALLKQLDSLRKKVL 96 (126)
Q Consensus 73 ~~~~~~~~--~~~~i~~~~~~~~Pvl 96 (126)
+..+++.+ ...+.+-.++.++||.
T Consensus 87 ~H~e~V~~~v~~gl~~v~l~~~~PV~ 112 (154)
T PRK00061 87 PHFDYVANEVAKGLADVSLETGVPVG 112 (154)
T ss_pred chHHHHHHHHHHHHHHHHhccCCCEE
Confidence 22233333 3345555667899953
No 202
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=86.23 E-value=2.6 Score=34.20 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=44.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~~ 74 (126)
||++|+-.++.--. -+-+++...++.+++++.|.++..+.+..++.... .-++.+|.||++||-....+|
T Consensus 1 m~v~Ii~tGdEll~-G~i~dtN~~~l~~~L~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlVIttGGlgpt~dD 75 (413)
T TIGR00200 1 LKAEIISVGDELLL-GQIVNTNAQWLADFLAHQGLPLSRRTTVGDNPERLKTIIRIASERADVLIFNGGLGPTSDD 75 (413)
T ss_pred CEEEEEEECccccC-CcEEEchHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcCCCEEEEcCCCCCCCcc
Confidence 58888888765321 11234566788899999999887665543332110 123679999999996544343
No 203
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=85.25 E-value=5.5 Score=28.24 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=48.7
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC---CeEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCC-CC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG---ETWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCND-AH 72 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~-~~ 72 (126)
...||+|+..+....-...- ..-..+.|.+.| .+++++++. .-|+|.. ..-.+||++|..|.--. ..
T Consensus 9 ~~~riaIV~srfn~~It~~L----l~gA~~~l~~~G~~~~~i~v~~VPGA~EiP~~a~~l~~~~~yDaiIaLG~VIrGeT 84 (158)
T PRK12419 9 TPQRIAFIQARWHADIVDQA----RKGFVAEIAARGGAASQVDIFDVPGAFEIPLHAQTLAKTGRYAAIVAAALVVDGGI 84 (158)
T ss_pred CCCEEEEEEecCCHHHHHHH----HHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEEEEEcCCC
Confidence 45799999988875422211 111234556667 456777653 1233321 11257999999986311 11
Q ss_pred CCchHHHH--HHHHHHHHHhcCCcEE
Q 033165 73 GNDVWICK--LIALLKQLDSLRKKVL 96 (126)
Q Consensus 73 ~~~~~~~~--~~~~i~~~~~~~~Pvl 96 (126)
+..+++.+ ...+.+-.++.++||.
T Consensus 85 ~H~e~V~~~v~~gl~~vsl~~~~PV~ 110 (158)
T PRK12419 85 YRHEFVAQAVIDGLMRVQLDTEVPVF 110 (158)
T ss_pred chhHHHHHHHHHHHHHHHhccCCCEE
Confidence 22244433 2344555567799963
No 204
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=84.94 E-value=12 Score=31.46 Aligned_cols=86 Identities=15% Similarity=0.200 Sum_probs=47.7
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh-hCCCeEEEEEccCCC---------CC----CCCC---C-CCcCEEE
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA-EEGETWDVFHVARGE---------FP----DDDD---F-GSYDGYV 63 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~---------~p----~~~~---~-~~~d~ii 63 (126)
.+++|+|+-...... ..+ ....+..+|+ ..|.++.+-...... .+ .... + .++|.+|
T Consensus 193 ~p~~VgIV~n~~k~~-a~e----l~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~l~~~~DlVI 267 (508)
T PLN02935 193 DPQTVLIITKPNSTS-VRV----LCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILLLHTKVDLVI 267 (508)
T ss_pred CCCEEEEEecCCCHH-HHH----HHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhhcccCCCEEE
Confidence 357899987755433 221 3345667776 466665543211000 00 0011 2 3689999
Q ss_pred EcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 64 ITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 64 i~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
..||-. .++...+.+....+|||||=.|.
T Consensus 268 siGGDG----------TlL~Aar~~~~~~iPILGIN~G~ 296 (508)
T PLN02935 268 TLGGDG----------TVLWAASMFKGPVPPVVPFSMGS 296 (508)
T ss_pred EECCcH----------HHHHHHHHhccCCCcEEEEeCCC
Confidence 999932 23444555545679999998773
No 205
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=84.88 E-value=6.9 Score=29.39 Aligned_cols=82 Identities=18% Similarity=0.166 Sum_probs=45.9
Q ss_pred CCeEEEEEcCCCc--hHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 3 GKKFAVLLCAEDS--EYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 3 ~~ki~Il~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
.++|+++...... ......-+.-...+.+.|++. .++..+++...++| +++|.+||.|.... +. ..
T Consensus 146 ~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~~l~~~~IP-----~~~d~Lvi~~P~~~-ls-----~~ 213 (271)
T PF09822_consen 146 KPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEELNLANEEIP-----DDADVLVIAGPKTD-LS-----EE 213 (271)
T ss_pred CceEEEEccccccccccccccCcchHHHHHHHHHhc-CceeecCCcccccC-----CCCCEEEEECCCCC-CC-----HH
Confidence 4677777765554 000011111223466777776 77777665422232 68999999877432 22 33
Q ss_pred HHHHHHHHHhcCCcEE
Q 033165 81 LIALLKQLDSLRKKVL 96 (126)
Q Consensus 81 ~~~~i~~~~~~~~Pvl 96 (126)
....|.+++++|-++|
T Consensus 214 e~~~l~~yl~~GG~ll 229 (271)
T PF09822_consen 214 ELYALDQYLMNGGKLL 229 (271)
T ss_pred HHHHHHHHHHcCCeEE
Confidence 5556777777766654
No 206
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.81 E-value=9.7 Score=29.09 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=44.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
|.+++|+.+... ... .....+.++|++.|.++.. + ..+.|.+|+.||-. .+.
T Consensus 2 ~~~i~iv~~~~~-~a~-----~~~~~l~~~l~~~g~~~~~-----~-------~~~~D~vi~lGGDG----------T~L 53 (264)
T PRK03501 2 RRNLFFFYKRDK-ELV-----EKVKPLKKIAEEYGFTVVD-----H-------PKNANIIVSIGGDG----------TFL 53 (264)
T ss_pred CcEEEEEECCCH-HHH-----HHHHHHHHHHHHCCCEEEc-----C-------CCCccEEEEECCcH----------HHH
Confidence 347888876555 321 1334577788888876542 0 13579999999932 233
Q ss_pred HHHHHHHhc-CCcEEEEch-H
Q 033165 83 ALLKQLDSL-RKKVLGICF-G 101 (126)
Q Consensus 83 ~~i~~~~~~-~~PvlGIC~-G 101 (126)
...+.+... ++|++||=. |
T Consensus 54 ~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 54 QAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred HHHHHhcccCCCeEEeEecCC
Confidence 444444333 689999988 6
No 207
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=84.69 E-value=2.4 Score=34.51 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=43.8
Q ss_pred CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~ 69 (126)
++|++|+-++.+--. .-+-+++...++..++++.|.++..+....++.... .-++++|.||++||.+
T Consensus 193 ~prV~IisTGdEl~~~g~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIItTGG~S 270 (419)
T PRK14690 193 PLRVAVLSTGDELVEPGALAEVGQIYDANRPMLLALARRWGHAPVDLGRVGDDRAALAARLDRAAAEADVILTSGGAS 270 (419)
T ss_pred CCEEEEEEccccccCCCCCCCCCeEEeCHHHHHHHHHHHCCCEEEEEeeeCCCHHHHHHHHHHhCccCCEEEEcCCcc
Confidence 579999999754210 112356677889999999999887665543332110 1235799999999853
No 208
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=84.68 E-value=1.5 Score=29.57 Aligned_cols=65 Identities=11% Similarity=-0.001 Sum_probs=39.4
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCND 70 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~ 70 (126)
|++|+-.+.+--. -..+++...++.+++++.|.++..+....++.... ..++++|.||.+||...
T Consensus 1 ~v~ii~~G~El~~-g~i~d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG~g~ 70 (133)
T cd00758 1 RVAIVTVSDELSQ-GQIEDTNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGGTGV 70 (133)
T ss_pred CEEEEEeCccccC-CceEEchHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCCCCC
Confidence 5677777654321 11245666788899999998877664433321100 11346999999998543
No 209
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=84.67 E-value=4.8 Score=29.03 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCCC---------------CC--CCCCCCCcCEEEEc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARGE---------------FP--DDDDFGSYDGYVIT 65 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~---------------~p--~~~~~~~~d~iii~ 65 (126)
+||+|+.....- +++. -...+.+-+++. |.+++++++.+.. .| ..+++.++|+|++.
T Consensus 1 ~kilIiY~S~~G-~T~~----lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~G 75 (197)
T TIGR01755 1 VKVLVLYYSMYG-HIET----MARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFG 75 (197)
T ss_pred CeEEEEEeCCCC-HHHH----HHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEE
Confidence 478999887642 2111 112233444444 8889888874311 01 01345689997775
Q ss_pred CC
Q 033165 66 GS 67 (126)
Q Consensus 66 G~ 67 (126)
-.
T Consensus 76 SP 77 (197)
T TIGR01755 76 TP 77 (197)
T ss_pred ec
Confidence 43
No 210
>PRK03670 competence damage-inducible protein A; Provisional
Probab=84.63 E-value=2.6 Score=31.94 Aligned_cols=70 Identities=10% Similarity=0.067 Sum_probs=42.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----C-CCC-CcCEEEEcCCCCCCCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----D-DFG-SYDGYVITGSCNDAHGN 74 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~-~~~-~~d~iii~G~~~~~~~~ 74 (126)
||..||-.++.--. -+..++...++.+.|...|.++..+.+..++.... . .+. .+|.||++||-....||
T Consensus 1 m~a~Ii~iGdEll~-G~i~dtN~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~~DlVIttGGlGpt~dD 76 (252)
T PRK03670 1 MFAEIITVGDELLT-GNTVDSNSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRKPEVLVISGGLGPTHDD 76 (252)
T ss_pred CEEEEEEeCCcCcC-CeEEehhHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCCCCEEEECCCccCCCCC
Confidence 46777777664321 11234556678899999999987665543321100 0 123 48999999996554444
No 211
>PRK00549 competence damage-inducible protein A; Provisional
Probab=84.19 E-value=3.8 Score=33.24 Aligned_cols=70 Identities=13% Similarity=-0.002 Sum_probs=44.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----CCCCCCcCEEEEcCCCCCCCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----DDDFGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----~~~~~~~d~iii~G~~~~~~~~ 74 (126)
||+.||-.+..--. -+-+++...++.+.|.+.|.++..+....++... .....++|.||++||-....+|
T Consensus 1 m~~~ii~~G~Ell~-G~i~DtN~~~L~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~~DlVItTGGlGpt~dD 75 (414)
T PRK00549 1 MKAEIIAVGTELLL-GQIVNTNAQFLSEKLAELGIDVYHQTVVGDNPERLLSALEIAEERSDLIITTGGLGPTKDD 75 (414)
T ss_pred CEEEEEEecccccC-CceeEhhHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHhccCCCEEEECCCCCCCCCc
Confidence 57888877764321 1123556778899999999988766544333110 0123679999999996554444
No 212
>PRK13055 putative lipid kinase; Reviewed
Probab=83.61 E-value=8 Score=30.18 Aligned_cols=64 Identities=13% Similarity=0.183 Sum_probs=36.0
Q ss_pred CCeEEEEEcCCCchH-HHHhhCCHHHHHHHHHhhCCCeEEEEEccC--CCCC---CCCCCCCcCEEEEcCCCCC
Q 033165 3 GKKFAVLLCAEDSEY-VKKKYGGYFGVFVRMLAEEGETWDVFHVAR--GEFP---DDDDFGSYDGYVITGSCND 70 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~p---~~~~~~~~d~iii~G~~~~ 70 (126)
|+|++|+.+...-.. ..+ ....+.+.|++.+.+++++.... ++.. .....+++|.||+.||-.+
T Consensus 2 ~~r~~iI~NP~sG~~~~~~----~~~~i~~~l~~~g~~~~i~~t~~~~~~a~~~~~~~~~~~~d~vvv~GGDGT 71 (334)
T PRK13055 2 QKRARLIYNPTSGQEIMKK----NVADILDILEQAGYETSAFQTTPEPNSAKNEAKRAAEAGFDLIIAAGGDGT 71 (334)
T ss_pred CceEEEEECCCCCchhHHH----HHHHHHHHHHHcCCeEEEEEeecCCccHHHHHHHHhhcCCCEEEEECCCCH
Confidence 578888877553221 111 12335677888898887764331 1110 0011246899999999543
No 213
>cd03522 MoeA_like MoeA_like. This domain is similar to a domain found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. There this domain is presumed to bind molybdopterin. The exact function of this subgroup is unknown.
Probab=83.54 E-value=2.3 Score=33.25 Aligned_cols=66 Identities=9% Similarity=0.028 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCC-CcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFG-SYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~-~~d~iii~G~~~ 69 (126)
++|++|+.++.....- ..++++...+...+++.|.++..+....++.... .-++ .+|.||++||.+
T Consensus 159 ~~rv~II~TG~Ev~~G-~i~D~~~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~ai~~~~~~g~DlIItTGGts 230 (312)
T cd03522 159 PLRVGLIVTGSEVYGG-RIEDKFGPVLRARLAALGVELVEQVIVPHDEAAIAAAIAEALEAGAELLILTGGAS 230 (312)
T ss_pred CCEEEEEEcCCcCCCC-cEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 5799999987643211 1256788889999999999887665443321100 0123 389999999854
No 214
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=82.35 E-value=1.7 Score=33.15 Aligned_cols=72 Identities=11% Similarity=0.016 Sum_probs=44.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~~~ 75 (126)
|++..||-.++.--.- +.-++-..++.+.|.+.|+++....+..|+.... ...+.+|-||++||-...+||.
T Consensus 1 ~~~a~iI~vG~ElL~G-~ivdtNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r~D~vI~tGGLGPT~DDi 77 (255)
T COG1058 1 MMKAEIIAVGDELLSG-RIVDTNAAFLADELTELGVDLARITTVGDNPDRIVEALREASERADVVITTGGLGPTHDDL 77 (255)
T ss_pred CceEEEEEEccceecC-ceecchHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhCCCEEEECCCcCCCccHh
Confidence 4566666655543110 0012345679999999999998777654432111 0125699999999977666653
No 215
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=82.01 E-value=2.1 Score=28.76 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=30.6
Q ss_pred hCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165 22 YGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN 69 (126)
Q Consensus 22 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~ 69 (126)
+++...++..++++.|.++..+.+..++.... ..++.+|.||.+||..
T Consensus 16 ~d~~~~~l~~~l~~~G~~~~~~~~v~Dd~~~I~~~l~~~~~~~dliittGG~g 68 (135)
T smart00852 16 YDSNGPALAELLTELGIEVTRYVIVPDDKEAIKEALREALERADLVITTGGTG 68 (135)
T ss_pred ccCcHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHHhCCCEEEEcCCCC
Confidence 34556678899999998876554433321100 0124699999999865
No 216
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=81.64 E-value=2.2 Score=34.58 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~ 69 (126)
++|++||-++..--+ --+-|++...++..++++.|.++..+.+..++.... ....++|.||.+||.+
T Consensus 177 ~prV~iistGdEl~~~~~~~~~g~i~dsn~~~l~a~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DlvIttGG~S 254 (411)
T PRK10680 177 KVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVS 254 (411)
T ss_pred CCEEEEEccCCeEeCCCCCCCCCEEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhccCCCEEEEcCCCC
Confidence 579999987754311 011245677788899999998877665544432110 1135799999999954
No 217
>COG0054 RibH Riboflavin synthase beta-chain [Coenzyme metabolism]
Probab=81.10 E-value=17 Score=25.67 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=53.8
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeE---EEEEcc-CCCCCC----CCCCCCcCEEEEcCCCCC-CC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETW---DVFHVA-RGEFPD----DDDFGSYDGYVITGSCND-AH 72 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~---~~~~~~-~~~~p~----~~~~~~~d~iii~G~~~~-~~ 72 (126)
.+.||+|+..+....-... ...-..+.+.+.|.+. +++++. .-+.|. ...-.+||+||-.|---. ..
T Consensus 11 ~~~riaIV~arfn~~I~d~----ll~gA~~~l~~~G~~~~~i~vv~VPGa~EiPl~a~~La~~~~yDAvv~lG~VIrG~T 86 (152)
T COG0054 11 KGLRIAIVVARFNDDITDA----LLEGAVDALKRHGADVDNIDVVRVPGAFEIPLAAKKLARTGKYDAVVALGAVIRGET 86 (152)
T ss_pred CCceEEEEEeehhHHHHHH----HHHHHHHHHHHcCCCcccceEEEeCCcchhHHHHHHHHhcCCcceEEEEeeEEeCCC
Confidence 3579999998876542211 1112334555566554 466653 223342 112367999998875211 11
Q ss_pred CCchHHHH--HHHHHHHHHhcCCcEEEEchH----HHHHHHH
Q 033165 73 GNDVWICK--LIALLKQLDSLRKKVLGICFG----HQVRAIT 108 (126)
Q Consensus 73 ~~~~~~~~--~~~~i~~~~~~~~PvlGIC~G----~Q~la~~ 108 (126)
...+++.. ...+.+-.++.++||.--=++ .|.+.++
T Consensus 87 ~Hfd~Va~~~~~gl~~vsl~~~~PV~~GVLt~~~~eqA~~ra 128 (152)
T COG0054 87 YHFDYVANEVARGLMDVSLETGVPVTFGVLTTDNIEQAIERA 128 (152)
T ss_pred ccHHHHHHHHHHHHHHHHHhhCCCeEeeecCCCcHHHHHHHh
Confidence 22234433 345556667789996433233 3666553
No 218
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=81.02 E-value=12 Score=24.50 Aligned_cols=57 Identities=9% Similarity=-0.091 Sum_probs=31.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
|.++||+++-...-.... ....+....++.|.++++-....+... +...++|.++++
T Consensus 1 m~~kkIllvC~~G~sTSl------l~~km~~~~~~~gi~~~V~A~~~~~~~--~~~~~~DviLl~ 57 (106)
T PRK10499 1 MEKKHIYLFCSAGMSTSL------LVSKMRAQAEKYEVPVIIEAFPETLAG--EKGQNADVVLLG 57 (106)
T ss_pred CCCCEEEEECCCCccHHH------HHHHHHHHHHHCCCCEEEEEeecchhh--ccccCCCEEEEC
Confidence 677888888665554321 111244445667888776553322211 235678876664
No 219
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=80.47 E-value=0.33 Score=26.49 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=11.4
Q ss_pred cEEEEchHHHHHHHHhC
Q 033165 94 KVLGICFGHQVRAITVF 110 (126)
Q Consensus 94 PvlGIC~G~Q~la~~~G 110 (126)
-..|-|||.|++..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T PF09075_consen 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SS--TTTTTHHHHTTT-
T ss_pred Cccccccchhhhhhccc
Confidence 46789999999976544
No 220
>PLN02404 6,7-dimethyl-8-ribityllumazine synthase
Probab=80.41 E-value=11 Score=26.09 Aligned_cols=104 Identities=15% Similarity=0.093 Sum_probs=56.2
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe---EEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCCC-C
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET---WDVFHVA-RGEFPDD----DDFGSYDGYVITGSCNDA-H 72 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~~-~ 72 (126)
...||+|+..+....-... -.+-..+.|.+.|.+ ++++++. .-|+|.. ..-.+||++|..|.--.- .
T Consensus 6 ~~~ri~IV~s~fn~~I~~~----Ll~ga~~~l~~~gv~~~~i~v~~VPGa~EiP~a~~~l~~s~~~DavIaLG~VIrGeT 81 (141)
T PLN02404 6 EGLRFGVVVARFNEIITKN----LLEGALETFKRYSVKEENIDVVWVPGSFEIPVVAQRLAKSGKYDAILCIGAVIRGDT 81 (141)
T ss_pred CCCEEEEEEecCcHHHHHH----HHHHHHHHHHHcCCCccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEEEEEEeCCC
Confidence 3579999999887542221 111223455566764 6666653 1223321 112479999998863111 1
Q ss_pred CCchHHHH--HHHHHHHHHhcCCcE-EEE---chHHHHHHHHh
Q 033165 73 GNDVWICK--LIALLKQLDSLRKKV-LGI---CFGHQVRAITV 109 (126)
Q Consensus 73 ~~~~~~~~--~~~~i~~~~~~~~Pv-lGI---C~G~Q~la~~~ 109 (126)
+..+++.+ ...+.+-.++.++|| +|| =.=.|.+.++-
T Consensus 82 ~H~e~V~~~v~~gl~~vsl~~~~PV~~GVLt~~~~eQA~~Rag 124 (141)
T PLN02404 82 THYDAVANSAASGVLSAGLNSGVPCIFGVLTCDDMEQALNRAG 124 (141)
T ss_pred chhHHHHHHHHHHHHHHHhccCCCEEEEEcCCCCHHHHHHHhC
Confidence 22244433 334555567789995 333 34467777764
No 221
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.07 E-value=7.5 Score=29.84 Aligned_cols=63 Identities=16% Similarity=0.212 Sum_probs=37.7
Q ss_pred HHHHHhhCCCeEEEEEccCCCC--C-----CCCCC-CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 29 FVRMLAEEGETWDVFHVARGEF--P-----DDDDF-GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~--p-----~~~~~-~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
+.++|++.|.++.+-......+ + ..+++ +.+|.+|..||-. .+....+.+...++|++||=.
T Consensus 5 l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~iGGDG----------T~L~aa~~~~~~~~PilgIn~ 74 (272)
T PRK02231 5 LFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIVIGGDG----------NMLGRARVLAKYDIPLIGINR 74 (272)
T ss_pred HHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEEECCcH----------HHHHHHHHhccCCCcEEEEeC
Confidence 5677878887776543111100 0 00122 3589999999932 244445555556899999987
Q ss_pred H
Q 033165 101 G 101 (126)
Q Consensus 101 G 101 (126)
|
T Consensus 75 G 75 (272)
T PRK02231 75 G 75 (272)
T ss_pred C
Confidence 7
No 222
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=80.06 E-value=10 Score=28.74 Aligned_cols=95 Identities=14% Similarity=0.057 Sum_probs=49.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CCCC---CCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EFPD---DDDFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p~---~~~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
|+|++|+-+...-... . ......+.+.|++.+.+++++..... +... ......+|.||+.||-.+
T Consensus 1 ~~~~~ii~Np~sg~~~--~-~~~~~~i~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GGDGT-------- 69 (293)
T TIGR00147 1 MAEAPAILNPTAGKSN--D-NKPLREVIMLLREEGMEIHVRVTWEKGDAARYVEEARKFGVDTVIAGGGDGT-------- 69 (293)
T ss_pred CceEEEEECCCccchh--h-HHHHHHHHHHHHHCCCEEEEEEecCcccHHHHHHHHHhcCCCEEEEECCCCh--------
Confidence 4688888776322110 0 11233466778888888877654321 1110 001135899999999443
Q ss_pred HHHHHHHHHHHh-cCCcEEE-EchHH-HHHHHHhC
Q 033165 79 CKLIALLKQLDS-LRKKVLG-ICFGH-QVRAITVF 110 (126)
Q Consensus 79 ~~~~~~i~~~~~-~~~PvlG-IC~G~-Q~la~~~G 110 (126)
+.+.++.+.. .+.|.+| |=.|- =.+++.+|
T Consensus 70 --l~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~ 102 (293)
T TIGR00147 70 --INEVVNALIQLDDIPALGILPLGTANDFARSLG 102 (293)
T ss_pred --HHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcC
Confidence 3334444443 3567777 44442 23455555
No 223
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=79.99 E-value=3 Score=33.81 Aligned_cols=67 Identities=9% Similarity=0.137 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCchHHH------HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----CCCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEYVK------KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----DDDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~------~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----~~~~~~~d~iii~G~~~ 69 (126)
++|++|+.++..--... +-|++-...+..++++.|.+...+-+..++... .+.++++|.||++||.+
T Consensus 176 kprV~IisTGdELv~~~~~l~~gqI~dsN~~~l~a~l~~~G~e~~~~giv~Dd~~~l~~~i~~a~~~~DviItsGG~S 253 (404)
T COG0303 176 KPRVAIISTGDELVEPGQPLEPGQIYDSNSYMLAALLERAGGEVVDLGIVPDDPEALREAIEKALSEADVIITSGGVS 253 (404)
T ss_pred CCEEEEEecCccccCCCCCCCCCeEEecCHHHHHHHHHHcCCceeeccccCCCHHHHHHHHHHhhhcCCEEEEeCCcc
Confidence 57999999887642111 124556668889999999987766655443211 01346799999999954
No 224
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=79.89 E-value=3.3 Score=31.36 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=27.4
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
++++|.+|..||- ..+....+.+...++|+|||=.|.
T Consensus 23 ~~~~Dlvi~iGGD----------GTlL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 23 IEEADVIVALGGD----------GFMLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cccCCEEEEECCC----------HHHHHHHHHhcCCCCeEEEEeCCC
Confidence 4678999999993 234455666556689999998875
No 225
>PLN02727 NAD kinase
Probab=79.56 E-value=12 Score=33.62 Aligned_cols=84 Identities=14% Similarity=0.063 Sum_probs=46.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCCCC---CC-----------CCC-CCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARGEF---PD-----------DDD-FGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~---p~-----------~~~-~~~~d~iii~G 66 (126)
.++|+|+..... + +.+ ....+.++|.+. |+++-+-.-....+ +. .++ .+..|.+|+.|
T Consensus 678 ~rtVgIV~K~~~-e-a~~----~~~eL~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLG 751 (986)
T PLN02727 678 PKTVLLLKKLGQ-E-LME----EAKEVASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLG 751 (986)
T ss_pred CCEEEEEcCCcH-H-HHH----HHHHHHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEEC
Confidence 468899877655 2 222 223456777665 66553321110000 00 011 13589999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 67 SCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
|-. .++...+.+....+|||||=+|.
T Consensus 752 GDG----------TlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 752 GDG----------VILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred CcH----------HHHHHHHHhcCCCCCEEEEeCCC
Confidence 932 24444555555689999998874
No 226
>PRK13555 azoreductase; Provisional
Probab=79.07 E-value=10 Score=27.73 Aligned_cols=44 Identities=7% Similarity=0.035 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHH----hhCC--CeEEEEEccCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRML----AEEG--ETWDVFHVARGEFP 51 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l----~~~g--~~~~~~~~~~~~~p 51 (126)
|+||++|++.+... .+||+..+.+.+ ++.+ .++++.++++..+|
T Consensus 1 M~kiL~I~asp~~~-----~~S~s~~la~~f~~~~~~~~p~~~V~~~DL~~~~~p 50 (208)
T PRK13555 1 MSKVLFVKANDRPA-----EQAVSSKMYETFVSTYKEANPNTEITELDLFALDLP 50 (208)
T ss_pred CCeEEEEeCCCCCC-----CCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCC
Confidence 56999999987421 135555554433 3443 78888888765554
No 227
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=78.64 E-value=9.7 Score=28.96 Aligned_cols=60 Identities=18% Similarity=0.104 Sum_probs=36.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
|||+||--+...+.-.+-. =...+.+.|++.|.++..+....+-......+.++|.++..
T Consensus 1 ~~v~v~~gg~s~e~~~sl~--s~~~i~~al~~~g~~~~~i~~~~~~~~~~~~~~~~D~v~~~ 60 (299)
T PRK14571 1 MRVALLMGGVSREREISLR--SGERVKKALEKLGYEVTVFDVDEDFLKKVDQLKSFDVVFNV 60 (299)
T ss_pred CeEEEEeCCCCCCccchHH--HHHHHHHHHHHcCCeEEEEccCchHHHHhhhccCCCEEEEe
Confidence 4899998887765321110 12356788888999988887543211111234568877664
No 228
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=78.26 E-value=25 Score=26.88 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=25.7
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
+.+|.+++.||-. .+....+...+.++|++||=.|+
T Consensus 54 ~~~d~ivvlGGDG----------tlL~~~~~~~~~~~pilgin~G~ 89 (281)
T COG0061 54 EKADLIVVLGGDG----------TLLRAARLLARLDIPVLGINLGH 89 (281)
T ss_pred cCceEEEEeCCcH----------HHHHHHHHhccCCCCEEEEeCCC
Confidence 6788888888832 24445555656679999999883
No 229
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=76.66 E-value=14 Score=27.45 Aligned_cols=81 Identities=12% Similarity=-0.036 Sum_probs=39.7
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCCCCCCCCCchHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
||+++..+..++.. .....-+.+.+++.|.++.++.....+... ... -..+||||+.+.....
T Consensus 1 ~i~~i~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~dgiii~~~~~~~------- 69 (294)
T cd06316 1 KAAIVMHTSGSDWS----NAQVRGAKDEFAKLGIEVVATTDAQFDPAKQVADIETTISQKPDIIISIPVDPVS------- 69 (294)
T ss_pred CeEEEecCCCChHH----HHHHHHHHHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCchh-------
Confidence 67887765443321 123333456667778877643222111100 001 1478999997542111
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 033165 79 CKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++.+.+.++|++.+
T Consensus 70 --~~~~i~~~~~~~iPvV~~ 87 (294)
T cd06316 70 --TAAAYKKVAEAGIKLVFM 87 (294)
T ss_pred --hhHHHHHHHHcCCcEEEe
Confidence 112344455567787543
No 230
>PRK00170 azoreductase; Reviewed
Probab=76.65 E-value=11 Score=26.69 Aligned_cols=43 Identities=14% Similarity=0.006 Sum_probs=27.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHH----HHHhhC--CCeEEEEEccCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFV----RMLAEE--GETWDVFHVARGEFP 51 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~l~~~--g~~~~~~~~~~~~~p 51 (126)
||||++|...+... ++++..+. +.+++. +.+++++++.+..+|
T Consensus 1 Mmkil~i~gSpr~~------~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p 49 (201)
T PRK00170 1 MSKVLVIKSSILGD------YSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIP 49 (201)
T ss_pred CCeEEEEecCCCCC------CcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCC
Confidence 47999999988642 14444444 344445 788888888654444
No 231
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=76.30 E-value=7.1 Score=25.57 Aligned_cols=80 Identities=19% Similarity=0.172 Sum_probs=40.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
|+||+++-...-.... ....+.+++++.|.++++......+++......++|.|+++ . + ++-..
T Consensus 1 MkkILlvCg~G~STSl------la~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~DvIll~-P------Q---i~~~~ 64 (104)
T PRK09590 1 MKKALIICAAGMSSSM------MAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDLYLVS-P------Q---TKMYF 64 (104)
T ss_pred CcEEEEECCCchHHHH------HHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCEEEEC-h------H---HHHHH
Confidence 3677766444432211 23346677888898887765432222221112468855553 2 1 22223
Q ss_pred HHHHHHH-hcCCcEEEE
Q 033165 83 ALLKQLD-SLRKKVLGI 98 (126)
Q Consensus 83 ~~i~~~~-~~~~PvlGI 98 (126)
+-+++.. +.++|+.-|
T Consensus 65 ~~i~~~~~~~~ipv~~I 81 (104)
T PRK09590 65 KQFEEAGAKVGKPVVQI 81 (104)
T ss_pred HHHHHHhhhcCCCEEEe
Confidence 3344433 357888654
No 232
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=76.14 E-value=28 Score=28.75 Aligned_cols=31 Identities=29% Similarity=0.254 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFH 44 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 44 (126)
++||+|+-.+..-. -..++|.+.|.++.+++
T Consensus 7 ~~kv~V~GLG~sG~-----------a~a~~L~~~G~~v~v~D 37 (448)
T COG0771 7 GKKVLVLGLGKSGL-----------AAARFLLKLGAEVTVSD 37 (448)
T ss_pred CCEEEEEecccccH-----------HHHHHHHHCCCeEEEEc
Confidence 57999998887643 25678888898887775
No 233
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=75.91 E-value=9.4 Score=26.68 Aligned_cols=41 Identities=12% Similarity=0.034 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCcEEEEchH--------HHHHHHHhCCccccCCccccc
Q 033165 82 IALLKQLDSLRKKVLGICFG--------HQVRAITVFSSHINASKIAGT 122 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G--------~Q~la~~~Gg~v~~~~~~~g~ 122 (126)
.++.+++.+.++++..|+.| ++-||.+.||+....+..-..
T Consensus 122 ~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~ 170 (178)
T cd01451 122 LAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSAD 170 (178)
T ss_pred HHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHH
Confidence 45566666779999999987 588999999998876544433
No 234
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=75.34 E-value=18 Score=31.23 Aligned_cols=94 Identities=14% Similarity=-0.005 Sum_probs=53.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCC-------CCCCCCcCEEEEcCCCCCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPD-------DDDFGSYDGYVITGSCNDAH 72 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~-------~~~~~~~d~iii~G~~~~~~ 72 (126)
|..+||+|-...... ..+...|++.|.++..+.+.+-. .+. ...+.+||.||++-.. .
T Consensus 1 ~~~~~VLVTRp~~qa-----------~~la~~L~~~G~~vi~~Pli~i~p~~~~~~l~~~l~~L~~yd~iIFTS~n-A-- 66 (656)
T PRK06975 1 ARAFTVVVTRPDGQS-----------AALAAQLAAAGLDVLDFPLLDIAPVADDAPLRAALARLSDYALVVFVSPN-A-- 66 (656)
T ss_pred CCCCEEEEeCcHhHH-----------HHHHHHHHHcCCCEEEcccEEeeCCCChHHHHHHHHhCCCCCEEEEECHH-H--
Confidence 667888877554432 34677888889887665433211 011 0246799999998441 1
Q ss_pred CCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCcc
Q 033165 73 GNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSH 113 (126)
Q Consensus 73 ~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v 113 (126)
++.+.+.++...-.+.|++.|.-+---..+.+|-.+
T Consensus 67 -----V~~~~~~l~~~~~~~~~i~AVG~~Ta~aL~~~Gi~~ 102 (656)
T PRK06975 67 -----VDRALARLDAIWPHALPVAVVGPGSVAALARHGIAA 102 (656)
T ss_pred -----HHHHHHHHHhhCccCCeEEEECHHHHHHHHHcCCCC
Confidence 111222222221246789888877766666677653
No 235
>COG1182 AcpD Acyl carrier protein phosphodiesterase [Lipid metabolism]
Probab=75.14 E-value=17 Score=26.87 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=43.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC--CCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCC--CCCCCc---
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE--GETWDVFHVARGEFPDDDDFGSYDGYVITGSCN--DAHGND--- 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~--~~~~~~--- 75 (126)
|.|++++...+..+...++ ...+-|.+.+++. +.++...++.+..+| ..|.-.+.|... ...++.
T Consensus 1 MskvL~I~as~~~~~S~S~--~l~~~Fi~~yk~~~P~dev~~~DL~~e~iP------~ld~~~~~a~~~~~~~~~t~~~~ 72 (202)
T COG1182 1 MSKVLVIKASPLGENSVSR--KLADEFIETYKEKHPNDEVIERDLAAEPIP------HLDEELLAAWFKPQAGEGTAEEK 72 (202)
T ss_pred CceEEEEecCCCccccHHH--HHHHHHHHHHHHhCCCCeEEEeecccCCCc------ccCHHHHhcccCCccCCCCHHHH
Confidence 6789999998874432221 1122233333333 555665565544333 455555554321 111111
Q ss_pred hHHHHHHHHHHHHHhcCCcEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlG 97 (126)
.-.....+++.+++.+++=|++
T Consensus 73 ~~~~~sd~l~~ef~aAD~vVi~ 94 (202)
T COG1182 73 EALARSDKLLEEFLAADKVVIA 94 (202)
T ss_pred HHHHHHHHHHHHHHhcCeEEEE
Confidence 2234455677777777766655
No 236
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=75.10 E-value=9 Score=30.52 Aligned_cols=62 Identities=13% Similarity=0.094 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 23 GGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 23 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
-+|...+++-|++.|+++..+. ..++.. .+...|.||--||-...--. --++....+||+||
T Consensus 74 kn~~~~~~~~l~k~giesklv~--R~~lsq--~i~waD~VisvGGDGTfL~A----------asrv~~~~~PViGv 135 (395)
T KOG4180|consen 74 KNAIKFCQEELSKAGIESKLVS--RNDLSQ--PIRWADMVISVGGDGTFLLA----------ASRVIDDSKPVIGV 135 (395)
T ss_pred HHHHHHHHHHHhhCCcceeeee--hhhccC--cCchhhEEEEecCccceeeh----------hhhhhccCCceeee
Confidence 3567778888889999988765 234433 37789999988985432110 01134567999997
No 237
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=75.01 E-value=17 Score=26.39 Aligned_cols=59 Identities=12% Similarity=0.023 Sum_probs=31.1
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc-CCCCCCC----C--CCCCcCEEEEcCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA-RGEFPDD----D--DFGSYDGYVITGS 67 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~p~~----~--~~~~~d~iii~G~ 67 (126)
||+|+..+..++.. .....-+.+.+++.|.++.++... ..+.... + .-.++||+|+.+.
T Consensus 1 ~Igvi~~~~~~~~~----~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 1 KIALVPKGTTSDFW----QAVKAGAEAAAKELGVKVTFQGPASETDVAGQVNLLENAIARGPDAILLAPT 66 (273)
T ss_pred CeEEEecCCCcHHH----HHHHHHHHHHHHHcCCEEEEecCccCCCHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 68888754333221 122333446667788888776532 1111000 0 0147999999754
No 238
>TIGR00114 lumazine-synth 6,7-dimethyl-8-ribityllumazine synthase. Archaeal members of this family are considered putative, although included in the seed and scoring above the trusted cutoff.
Probab=74.61 E-value=17 Score=25.06 Aligned_cols=101 Identities=16% Similarity=0.181 Sum_probs=53.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe---EEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCC-CCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET---WDVFHVA-RGEFPDD----DDFGSYDGYVITGSCND-AHGN 74 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~---~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~-~~~~ 74 (126)
+||+|+..+...+-... -.+-..+.|++.|.+ ++++++. .-|+|.. ..-.+||++|..|.--. ..+.
T Consensus 1 ~ri~IV~s~~n~~i~~~----L~~ga~~~l~~~g~~~~~i~v~~VPGa~EiP~a~~~l~~~~~~DavI~LG~VIrG~T~H 76 (138)
T TIGR00114 1 VRVGIVIARFNRDITDM----LLKGAIDALKRLGAEVDNIDVIWVPGAFELPLAVKKLAETGKYDAVIALGCVIRGGTPH 76 (138)
T ss_pred CEEEEEEecCCHHHHHH----HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEEeeEEeCCCch
Confidence 48999988877543221 111233556666764 4566543 1233321 01257999999986311 1122
Q ss_pred chHHHH--HHHHHHHHHhcCCcEE-EE---chHHHHHHHH
Q 033165 75 DVWICK--LIALLKQLDSLRKKVL-GI---CFGHQVRAIT 108 (126)
Q Consensus 75 ~~~~~~--~~~~i~~~~~~~~Pvl-GI---C~G~Q~la~~ 108 (126)
.+++.+ ...+.+-.++.++||. || =--.|.+.++
T Consensus 77 ~e~v~~~v~~gl~~~sl~~~~PV~~GvLt~~~~eQa~~R~ 116 (138)
T TIGR00114 77 FEYVADEAAKGIADLALDYDKPVIFGILTTGTIEQAIERA 116 (138)
T ss_pred hHHHHHHHHHHHHHHHhhhCCCEEEEecCCCCHHHHHHHc
Confidence 233332 3445555677799953 33 2345666664
No 239
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=74.55 E-value=19 Score=23.62 Aligned_cols=39 Identities=28% Similarity=0.447 Sum_probs=24.5
Q ss_pred HHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCC
Q 033165 27 GVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSC 68 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~ 68 (126)
..+.+.+...|.+++++++.+.+ ..++.++|.||+.-+.
T Consensus 17 ~~i~~~~~~~g~~v~~~~~~~~~---~~~l~~~d~iilgspt 55 (140)
T TIGR01753 17 NIIAEGLKEAGAEVDLLEVADAD---AEDLLSYDAVLLGCST 55 (140)
T ss_pred HHHHHHHHhcCCeEEEEEcccCC---HHHHhcCCEEEEEcCC
Confidence 34555566678888888865321 2256779988776443
No 240
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=74.30 E-value=24 Score=25.58 Aligned_cols=40 Identities=23% Similarity=0.342 Sum_probs=28.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHH---HhhCCCeEEEEEcc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRM---LAEEGETWDVFHVA 46 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~---l~~~g~~~~~~~~~ 46 (126)
|+||+|+-+..-+. +||.|.....++ +.+.|.+++++...
T Consensus 1 mkkIaIiGtrGIPa----~YGGfET~ve~L~~~l~~~g~~v~Vyc~~ 43 (185)
T PF09314_consen 1 MKKIAIIGTRGIPA----RYGGFETFVEELAPRLVSKGIDVTVYCRS 43 (185)
T ss_pred CceEEEEeCCCCCc----ccCcHHHHHHHHHHHHhcCCceEEEEEcc
Confidence 78999999987653 688877655543 34458888888643
No 241
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=74.04 E-value=11 Score=27.42 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=38.7
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC---CCe--EEEEEccCCCCCC----CC--CCCCcCEEEEcCCCCCCCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE---GET--WDVFHVARGEFPD----DD--DFGSYDGYVITGSCNDAHG 73 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~--~~~~~~~~~~~p~----~~--~~~~~d~iii~G~~~~~~~ 73 (126)
||+++..+...+... ....-+.+.+++. |.+ +.++....+ ... .. .-.+.||||+.+...+.
T Consensus 1 ~Ig~i~~~~~~~~~~----~~~~~i~~~~~~~~~~g~~~~l~i~~~~~~-~~~~~~~~~~~~~~~vdgiIi~~~~~~~-- 73 (272)
T cd06300 1 KIGLSNSYAGNTWRA----QMLDEFKAQAKELKKAGLISEFIVTSADGD-VAQQIADIRNLIAQGVDAIIINPASPTA-- 73 (272)
T ss_pred CeEEeccccCChHHH----HHHHHHHHHHHhhhccCCeeEEEEecCCCC-HHHHHHHHHHHHHcCCCEEEEeCCChhh--
Confidence 688887655443211 1223344555666 764 344432211 000 00 11489999997642111
Q ss_pred CchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 74 NDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 74 ~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++.+.+.++|++.+
T Consensus 74 -------~~~~l~~~~~~~iPvv~~ 91 (272)
T cd06300 74 -------LNPVIEEACEAGIPVVSF 91 (272)
T ss_pred -------hHHHHHHHHHCCCeEEEE
Confidence 112344445567787664
No 242
>COG1031 Uncharacterized Fe-S oxidoreductase [Energy production and conversion]
Probab=73.95 E-value=11 Score=31.41 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=52.3
Q ss_pred CeEEEEEcCCCchHH--HHhh-CCHHHHHHHHHhhCC--CeEEEEEccCC--CCCCCCCCCCcCEEEEcCCCCCCCC---
Q 033165 4 KKFAVLLCAEDSEYV--KKKY-GGYFGVFVRMLAEEG--ETWDVFHVARG--EFPDDDDFGSYDGYVITGSCNDAHG--- 73 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~--~~~~-~~~~~~~~~~l~~~g--~~~~~~~~~~~--~~p~~~~~~~~d~iii~G~~~~~~~--- 73 (126)
||++|++--.++|.- .--| +-|+....-++.+.| .+++.++++.- .....+.+.+||.+|+-||-..+-.
T Consensus 1 m~~~IiDGY~DEPAglGVPPYi~~YpRY~aGAl~~~g~~~~v~Y~tID~lR~~~~~~~~l~k~d~~V~I~G~~vPGKYlg 80 (560)
T COG1031 1 MRAAIIDGYTDEPAGLGVPPYIGPYPRYAAGALKKAGKDVEVDYVTIDRLRENFKTLEILNKYDLVVFIAGVTVPGKYLG 80 (560)
T ss_pred CceeeeccccCCcccCCCCCcccccHHHHHHHHHHcCCCceeEEEEHHHhhccchhhhhhhcCCEEEEEeccccCccccC
Confidence 578898877766521 1112 457777777888874 45566665421 1112235789999999887543311
Q ss_pred Cch-HHHHHHHHHHHHHhcCCcEEE
Q 033165 74 NDV-WICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 74 ~~~-~~~~~~~~i~~~~~~~~PvlG 97 (126)
..| ...++..+++.+ .++.++|
T Consensus 81 a~P~tl~E~~~i~~~~--~gvkilG 103 (560)
T COG1031 81 ATPATLEELLRILSIA--DGVKILG 103 (560)
T ss_pred CCCCCHHHHHHHHHHh--cCcEEec
Confidence 112 233444444433 4578877
No 243
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=73.34 E-value=2.8 Score=35.31 Aligned_cols=67 Identities=13% Similarity=0.109 Sum_probs=42.6
Q ss_pred CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~ 69 (126)
++|++|+-++..--. .-+-|++-...+..++++.|.++..+.+..++.... +.++++|.||++||.+
T Consensus 179 rprV~IisTGdELv~pg~~l~~G~I~dsNs~~L~a~l~~~G~~v~~~~iv~Dd~e~i~~~l~~al~~~DlVIttGGtS 256 (546)
T PRK14497 179 KPKIYLIATGDELVEPGNSLSPGKIYESNLHYLYSKLKSEGYKIVGLSLLSDDKESIKNEIKRAISVADVLILTGGTS 256 (546)
T ss_pred CCEEEEEEcCCcccCCCCCCCCCcEEEhHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 469999988853210 012245566788888999998877665544432111 1235799999999854
No 244
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=73.12 E-value=12 Score=24.24 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=24.8
Q ss_pred HHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 27 GVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
..+.+++++.|.++++......+++. ..+++|.++++
T Consensus 18 ~km~~~a~~~gi~~~i~a~~~~e~~~--~~~~~Dvill~ 54 (99)
T cd05565 18 NALNKGAKERGVPLEAAAGAYGSHYD--MIPDYDLVILA 54 (99)
T ss_pred HHHHHHHHHCCCcEEEEEeeHHHHHH--hccCCCEEEEc
Confidence 34778888899998877654444433 46789955554
No 245
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=73.10 E-value=0.97 Score=30.81 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCC
Q 033165 23 GGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHG 73 (126)
Q Consensus 23 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~ 73 (126)
++...++.++|++.|.++..+.+..++.... ..++++|.||.+||-....+
T Consensus 16 d~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~D~VittGG~g~~~~ 71 (144)
T PF00994_consen 16 DSNGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRADLVITTGGTGPGPD 71 (144)
T ss_dssp BHHHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTTSEEEEESSSSSSTT
T ss_pred EhHHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccCCEEEEcCCcCcccC
Confidence 4556778899999999887665543431110 12356799999998654433
No 246
>PRK13556 azoreductase; Provisional
Probab=73.08 E-value=11 Score=27.21 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHH----HHHhhC--CCeEEEEEccCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFV----RMLAEE--GETWDVFHVARGEFP 51 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~l~~~--g~~~~~~~~~~~~~p 51 (126)
|+||++|.+.+... .+|++..+. +.+++. +.+++++++++..+|
T Consensus 1 m~kiL~I~~spr~~-----~~S~s~~l~~~~~~~~~~~~~~~~V~~~DL~~~~~P 50 (208)
T PRK13556 1 MSKVLFVKANNRPA-----EQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELP 50 (208)
T ss_pred CCeEEEEeCCCCCC-----CCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCCC
Confidence 57999999988620 124334343 344443 788988888754444
No 247
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=72.91 E-value=7.7 Score=26.29 Aligned_cols=67 Identities=24% Similarity=0.284 Sum_probs=32.5
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHh--cCCcEEEEc
Q 033165 25 YFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDS--LRKKVLGIC 99 (126)
Q Consensus 25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~--~~~PvlGIC 99 (126)
+..++.+.|+..+..+++..+.. ...++.+||.||+.++-.. . .+...+.+++++..+ .++|+.-++
T Consensus 14 ~A~~ia~~l~~~~~~v~~~~~~~----~~~~~~~yD~vi~gspiy~--g--~~~~~~~~fi~~~~~~l~~k~v~~f~ 82 (143)
T PF12724_consen 14 IAEWIAEKLGEEGELVDLEKVEE----DEPDLSDYDAVIFGSPIYA--G--RIPGEMREFIKKNKDNLKNKKVALFS 82 (143)
T ss_pred HHHHHHHHHhhhccEEEHHhhhh----cccccccCCEEEEEEEEEC--C--cCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 44455555554444444333211 1236789999888765321 1 122334455544321 356654443
No 248
>PRK06242 flavodoxin; Provisional
Probab=72.78 E-value=26 Score=23.52 Aligned_cols=52 Identities=13% Similarity=0.105 Sum_probs=27.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
||++|+....... .+..+.+.+.+ +.+.+++++.... .+++.++|.||+...
T Consensus 1 mk~~IiY~S~~tG--------nT~~~A~~ia~-~l~~~~~~i~~~~---~~~~~~~d~ii~g~p 52 (150)
T PRK06242 1 MKALIVYASVHHG--------NTEKIAKAIAE-VLDAEVIDPGDVN---PEDLSEYDLIGFGSG 52 (150)
T ss_pred CcEEEEEeCCCCC--------CHHHHHHHHHH-hcCcEEecHHHCC---cccHhHCCEEEEeCc
Confidence 5778887764211 23345555532 1234555554221 235789997777543
No 249
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=71.91 E-value=20 Score=25.94 Aligned_cols=52 Identities=19% Similarity=0.165 Sum_probs=25.7
Q ss_pred HHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEE
Q 033165 31 RMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVL 96 (126)
Q Consensus 31 ~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pvl 96 (126)
+.|.+.|++++++++.. ++++|..||+|.-..-. ++..+.|+++++++-.++
T Consensus 37 ~al~~~gi~vDvv~~~~-------dL~~Ykllv~P~~~~l~-------~~~~~~L~~yV~~GG~li 88 (207)
T PF08532_consen 37 RALRELGIPVDVVSPDD-------DLSGYKLLVLPSLYILS-------PEFAERLRAYVENGGTLI 88 (207)
T ss_dssp HHHHTTT--EEEE-TTS---------TT-SEEEES--SC---------HHH---HHHHHT-SS-EE
T ss_pred HHHHHcCCceEEecCcC-------CcccCcEEEEeeEEEEC-------hHHHHHHHHHHHCCCEEE
Confidence 57788999999998431 57889999999774321 234455667777654443
No 250
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=71.64 E-value=36 Score=24.72 Aligned_cols=81 Identities=12% Similarity=0.178 Sum_probs=40.9
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCCCCCCCCCchH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~~~~~~~~~~~ 77 (126)
||+|+-.+...+.. .....-+.+.+++.|.++.++......-+.. +. -...||+|+.+...+.
T Consensus 1 ~igvi~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~------ 70 (275)
T cd06320 1 KYGVVLKTLSNEFW----RSLKEGYENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINKGYKGLLFSPISDVN------ 70 (275)
T ss_pred CeeEEEecCCCHHH----HHHHHHHHHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHhCCCEEEECCCChHH------
Confidence 57777765443321 1223335566677788887764321110110 01 1478999986542111
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 033165 78 ICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++.+.+.++|++.+
T Consensus 71 ---~~~~~~~~~~~~iPvV~~ 88 (275)
T cd06320 71 ---LVPAVERAKKKGIPVVNV 88 (275)
T ss_pred ---hHHHHHHHHHCCCeEEEE
Confidence 112244445568888665
No 251
>PRK10653 D-ribose transporter subunit RbsB; Provisional
Probab=71.32 E-value=24 Score=26.24 Aligned_cols=61 Identities=11% Similarity=0.125 Sum_probs=34.4
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
|...+|+++......+.. .+....+.+.+++.|.++.++....+ +.. +. -.++||+|+.+.
T Consensus 24 ~~~~~I~vi~~~~~~~f~----~~~~~~i~~~~~~~G~~~~~~~~~~d--~~~~~~~~~~l~~~~~dgiii~~~ 91 (295)
T PRK10653 24 MAKDTIALVVSTLNNPFF----VSLKDGAQKEADKLGYNLVVLDSQNN--PAKELANVQDLTVRGTKILLINPT 91 (295)
T ss_pred ccCCeEEEEecCCCChHH----HHHHHHHHHHHHHcCCeEEEecCCCC--HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 446788888754443321 23344556677778988877643211 110 01 147999998753
No 252
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=71.15 E-value=4.6 Score=32.40 Aligned_cols=67 Identities=10% Similarity=0.111 Sum_probs=43.6
Q ss_pred CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~ 69 (126)
++|++|+-++..--. .-+-+++...++..+|++.|.++..+....++.... +-++++|.||.+||.+
T Consensus 168 ~~rv~ii~tGdEl~~~g~~~~~g~i~dsn~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~~DliittGG~s 245 (394)
T cd00887 168 RPRVAIISTGDELVEPGEPLAPGQIYDSNSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEEADVVITSGGVS 245 (394)
T ss_pred CCEEEEEeCCCcccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 579999988764310 112346777889999999998887665543331100 1234699999999954
No 253
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=71.14 E-value=36 Score=26.99 Aligned_cols=89 Identities=12% Similarity=0.078 Sum_probs=47.7
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHH-HHHHhhCC---CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCC--C
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVF-VRMLAEEG---ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHG--N 74 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~-~~~l~~~g---~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~--~ 74 (126)
|.++||+|+-.+----. +.+. .++-.... ++++++. +...|. ..-....|++-+....+..+ +
T Consensus 1 ~~~~~iaViGaGVIGls--------TA~~i~~~~~~~~ip~~~vtv~~--Drf~e~-T~s~~~AGl~~p~~~~~~~~~~~ 69 (342)
T KOG3923|consen 1 NKTPRIAVIGAGVIGLS--------TALCILELYHSVLIPVAKVTVIS--DRFTED-TTSDVAAGLFRPDLSDGTPQEIN 69 (342)
T ss_pred CCCccEEEEcCCeechh--------HHHHHHHhhhhccCCcceEEEec--CCCccc-cccccccceeecccCCCCcHHHH
Confidence 67899999976654211 1111 12111122 3344433 221221 12245678887764333322 2
Q ss_pred chHHHHHHHHHHHHHh-cCCcEEEEch
Q 033165 75 DVWICKLIALLKQLDS-LRKKVLGICF 100 (126)
Q Consensus 75 ~~~~~~~~~~i~~~~~-~~~PvlGIC~ 100 (126)
..|.....+++..+.+ ...|-.|||+
T Consensus 70 ~~w~k~tf~~l~~l~rs~~a~~aGV~l 96 (342)
T KOG3923|consen 70 RQWGKDTFNYLAHLARSEEAGEAGVCL 96 (342)
T ss_pred HHHHHHHHHHHHHHhccccccccceEE
Confidence 3688777777766655 4789999995
No 254
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=70.23 E-value=19 Score=26.32 Aligned_cols=58 Identities=7% Similarity=-0.026 Sum_probs=29.3
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-C-----CCCCcCEEEEcCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-D-----DFGSYDGYVITGS 67 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~-----~~~~~d~iii~G~ 67 (126)
||+|+..+..++. |.....-+.+.+++.|.++.+.....+ .... + .-...||||+.+.
T Consensus 1 ~igv~~~~~~~~~----~~~~~~~i~~~~~~~g~~v~~~~~~~~-~~~~~~~i~~~~~~~~Dgiii~~~ 64 (282)
T cd06318 1 KIGFSQYTLNSPF----FAALTEAAKAHAKALGYELISTDAQGD-LTKQIADVEDLLTRGVNVLIINPV 64 (282)
T ss_pred CeeEEeccccCHH----HHHHHHHHHHHHHHcCCEEEEEcCCCC-HHHHHHHHHHHHHcCCCEEEEecC
Confidence 5677764433321 112233344566677888776553211 1000 0 1147999999754
No 255
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=70.13 E-value=6.9 Score=28.34 Aligned_cols=92 Identities=17% Similarity=-0.057 Sum_probs=48.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCC------CCCCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDD------DDFGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~------~~~~~~d~iii~G~~~~~~~~~ 75 (126)
||||+|...... .+.+.+.|++.|.++..+.+.+-. .+.. ..+..||.||++-...
T Consensus 1 ~~~ilitr~~~~-----------~~~l~~~l~~~G~~v~~~p~~~~~~~~~~~~~~~~~~~~~~d~iiftS~~a------ 63 (249)
T PRK05928 1 MMKILVTRPSPK-----------AEELVELLRELGFVALHFPLIEIEPGRQLPQLAAQLAALGADWVIFTSKNA------ 63 (249)
T ss_pred CCEEEEeCCHHH-----------HHHHHHHHHHcCCCEEEeccEEEecCCCcChHHHHhhCCCCCEEEEECHHH------
Confidence 477777755332 234678888899887665443211 1111 2457899999984411
Q ss_pred hHHHHHHHHHHH-H--HhcCCcEEEEchHHHHHHHHhCCcc
Q 033165 76 VWICKLIALLKQ-L--DSLRKKVLGICFGHQVRAITVFSSH 113 (126)
Q Consensus 76 ~~~~~~~~~i~~-~--~~~~~PvlGIC~G~Q~la~~~Gg~v 113 (126)
+..+.+.+++ . .-.+.+++.|.-.-.-..+.+|.+.
T Consensus 64 --v~~~~~~~~~~~~~~~~~~~~~avG~~Ta~~l~~~G~~~ 102 (249)
T PRK05928 64 --VEFLLSALKKKKLKWPKNKKYAAIGEKTALALKKLGGKV 102 (249)
T ss_pred --HHHHHHHHHhcCcCCCCCCEEEEECHHHHHHHHHcCCCc
Confidence 1111222210 0 0124566666555555555566654
No 256
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=69.67 E-value=22 Score=22.58 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=23.0
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
.+.+.+++.|.++++....-.+++. .++++|.++.+
T Consensus 22 ki~~~l~~~gi~~~v~~~~~~e~~~--~~~~~D~iv~t 57 (94)
T PRK10310 22 EIKELCQSHNIPVELIQCRVNEIET--YMDGVHLICTT 57 (94)
T ss_pred HHHHHHHHCCCeEEEEEecHHHHhh--hcCCCCEEEEC
Confidence 4668888899988877643333332 34678866444
No 257
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=68.84 E-value=10 Score=27.02 Aligned_cols=39 Identities=18% Similarity=0.246 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCchHHHHhhCCH----HHHHHHHHhhCC-CeEEEEEccCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGY----FGVFVRMLAEEG-ETWDVFHVARG 48 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~----~~~~~~~l~~~g-~~~~~~~~~~~ 48 (126)
|||+||.+.+.... |+ .+.+.+.+++.+ .++++++++..
T Consensus 1 mkiLvI~asp~~~~------S~s~~l~~~~~~~~~~~~~~~v~~~dL~~~ 44 (199)
T PF02525_consen 1 MKILVINASPRPEG------SFSRALADAFLEGLQEAGPHEVEIRDLYEE 44 (199)
T ss_dssp EEEEEEE--SSTTT------SHHHHHHHHHHHHHHHHTTSEEEEEETTTT
T ss_pred CEEEEEEcCCCCcc------CHHHHHHHHHHHHHHHcCCCEEEEEECccc
Confidence 69999999887632 34 344556666778 88999998764
No 258
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=68.74 E-value=8.7 Score=30.34 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=26.5
Q ss_pred CCCCcCEEEEc-CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 55 DFGSYDGYVIT-GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 55 ~~~~~d~iii~-G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
.+.+.|.||+. ||+..+--..--+..+.+.|++ ...|+++||.
T Consensus 186 AI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~---~~ap~i~v~n 229 (323)
T COG0391 186 AIKEADLIVIGPGSLFTSILPILLLPGIAEALRE---TVAPIVYVCN 229 (323)
T ss_pred HHHhCCEEEEcCCccHhhhchhhchhHHHHHHHh---CCCCEEEecc
Confidence 35789999984 5554432222234455555554 5789999993
No 259
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=68.51 E-value=15 Score=28.30 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=58.0
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEccCCCCCC----CCCCCCcCEEEEcCCCCCCCCCchHH-
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVARGEFPD----DDDFGSYDGYVITGSCNDAHGNDVWI- 78 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~p~----~~~~~~~d~iii~G~~~~~~~~~~~~- 78 (126)
.|.|+......+. . +..++.+.++..|. ++.++.....+-.+ ...+++.++|+++||-..-+-. .|-
T Consensus 54 ~i~I~paas~ep~---~---iG~~y~rife~~gv~~v~ildir~R~~a~~s~~~~~v~~a~gIfftGGDQ~ri~~-~lkd 126 (293)
T COG4242 54 YIVIIPAASREPR---A---IGGNYIRIFEMMGVEEVQILDIRNREDASSSDIVAKVENATGIFFTGGDQLRIIG-SLKD 126 (293)
T ss_pred EEEEEecCccChh---h---hccchhhHHHHhccceeEEEeeecccccchHHHHHHHHhCceEEEecCcceeeee-eccC
Confidence 5666666666552 2 33445555666554 45555543211111 1235789999999995432111 111
Q ss_pred HHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 79 CKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
..+.+.|++.++.+.-+-|.-.|.-++...
T Consensus 127 Tpl~~~ir~r~r~G~avgGTSAGAavM~~~ 156 (293)
T COG4242 127 TPLMAAIRQRVRRGIAVGGTSAGAAVMSDH 156 (293)
T ss_pred CHHHHHHHHHHhcCceecccccchhhcCCc
Confidence 236677888888899999999998888753
No 260
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=67.91 E-value=10 Score=32.30 Aligned_cols=67 Identities=12% Similarity=0.010 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~ 69 (126)
++|++|+-++..--. .-+-|++...++..++++.|.++..+....++.... .-++++|.||.+||.+
T Consensus 367 ~prV~IistGdEl~~~g~~~~~g~i~dsn~~~L~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~a~~~~DlIIttGG~s 444 (597)
T PRK14491 367 RPKVAVFSTGDEVQAPGETLKPNCIYDSNRFTIKAMAKKLGCEVIDLGIIEDSEAALEATLEQAAAQADVVISSGGVS 444 (597)
T ss_pred CCEEEEEecCCeeccCCCcCCCCcEEeCCHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhhcCCEEEEcCCcc
Confidence 579999988764211 012245667788899999999877665443332110 1235799999999954
No 261
>cd01544 PBP1_GalR Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand-binding domain of DNA transcription repressor GalR which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalR is a dimeric protein like GalS and is exclusively involved in the regulation of galactose permease, the low-affinity galactose transporter. GalS is involved in regulating expression of the high-affinity galactose transporter encoded by the mgl operon. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are structurally homologous to the periplasmic sugar bindi
Probab=67.79 E-value=25 Score=25.68 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=32.7
Q ss_pred eEEEEEcCCCchHHHHh-hCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 5 KFAVLLCAEDSEYVKKK-YGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
||+|+..........+. +..+..-+.+.+++.|.++.++.... + +. .....+||+|+.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~-~~-~~~~~vdgii~~~ 60 (270)
T cd01544 1 RIAIVQWYSEEEELDDPYYLSIRLGIEKRAQELGIELTKFFRDD-D-LL-EILEDVDGIIAIG 60 (270)
T ss_pred CeEEEEeccccccccCccHHHHHHHHHHHHHHcCCEEEEEeccc-h-hH-HhccCcCEEEEec
Confidence 67888874433222211 11233344566677788887765422 1 11 1346899999975
No 262
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=67.46 E-value=39 Score=23.48 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=16.6
Q ss_pred eEEEEEccCCCCCCCCCCCCcCEEEEcCCCC
Q 033165 39 TWDVFHVARGEFPDDDDFGSYDGYVITGSCN 69 (126)
Q Consensus 39 ~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~ 69 (126)
+++++++.+.+ ..++.+||.|++.-+.+
T Consensus 28 ~~~i~~~~~~~---~~~l~~~d~ii~gspty 55 (167)
T TIGR01752 28 DVDVFNIAKAS---KEDLNAYDKLILGTPTW 55 (167)
T ss_pred ceEEEEcccCC---HhHHhhCCEEEEEecCC
Confidence 46666654321 23577899888765543
No 263
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=67.33 E-value=35 Score=23.08 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHhhCCCeEEEEEccCC-CCC--------CCCCCCCcCEEEEcCCCCCCCCC---chHHHHHHHHHHHHHh
Q 033165 23 GGYFGVFVRMLAEEGETWDVFHVARG-EFP--------DDDDFGSYDGYVITGSCNDAHGN---DVWICKLIALLKQLDS 90 (126)
Q Consensus 23 ~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p--------~~~~~~~~d~iii~G~~~~~~~~---~~~~~~~~~~i~~~~~ 90 (126)
.+|+..+.+.|++.+..+++++..-. .-. ....-.++|.|+|.-|..+.... ..+...+.++++.+.+
T Consensus 20 ~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~~pd~v~i~~G~ND~~~~~~~~~~~~~l~~li~~~~~ 99 (177)
T cd01822 20 EGWPALLQKRLDARGIDVTVINAGVSGDTTAGGLARLPALLAQHKPDLVILELGGNDGLRGIPPDQTRANLRQMIETAQA 99 (177)
T ss_pred CchHHHHHHHHHHhCCCeEEEecCcCCcccHHHHHHHHHHHHhcCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHH
Confidence 46888888888766667777765321 100 00011378999998776554221 1355667777777766
Q ss_pred cCCcEEEE
Q 033165 91 LRKKVLGI 98 (126)
Q Consensus 91 ~~~PvlGI 98 (126)
.+.+++=+
T Consensus 100 ~~~~vil~ 107 (177)
T cd01822 100 RGAPVLLV 107 (177)
T ss_pred CCCeEEEE
Confidence 66665544
No 264
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=66.98 E-value=30 Score=28.62 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=37.3
Q ss_pred CCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CC---CCCCCCCCCcCEEEEcCCCCC
Q 033165 3 GKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GE---FPDDDDFGSYDGYVITGSCND 70 (126)
Q Consensus 3 ~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~---~p~~~~~~~~d~iii~G~~~~ 70 (126)
++|++|+.+-..-. ...+ .|...+...|++.+++++++.... ++ +-.......||+||+.||-..
T Consensus 111 ~kr~lvIvNP~SGkg~a~k---~~~~~v~~~L~~~gi~~~v~~T~~~ghA~~la~~~~~~~~D~VV~vGGDGT 180 (481)
T PLN02958 111 PKRLLVFVNPFGGKKSASK---IFFDVVKPLLEDADIQLTIQETKYQLHAKEVVRTMDLSKYDGIVCVSGDGI 180 (481)
T ss_pred CcEEEEEEcCCCCCcchhH---HHHHHHHHHHHHcCCeEEEEeccCccHHHHHHHHhhhcCCCEEEEEcCCCH
Confidence 57888887643221 1111 133456678888999887664321 11 100112467999999999543
No 265
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=66.93 E-value=37 Score=23.00 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=36.2
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEE
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
+.+.|.+.+.++++++.. .++.+|+.||+|.-.... ....+.|++.++++--++.
T Consensus 31 ~~~~l~~~gi~~d~v~~~-------~~l~~y~~vi~P~~~~~~-------~~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 31 LYRALRELGIPVDVVPPD-------ADLSGYKLVVLPDLYLLS-------DATAAALRAYVENGGTLVA 85 (154)
T ss_pred HHHHHHHCCCCEEEECCC-------CCcccCCEEEECchhcCC-------HHHHHHHHHHHHCCCEEEE
Confidence 446777889999988731 246789999999775432 2345567777776544433
No 266
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=66.70 E-value=25 Score=25.42 Aligned_cols=79 Identities=15% Similarity=0.218 Sum_probs=39.2
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC--C---C--CCCcCEEEEcCCCCCCCCCchH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD--D---D--FGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~--~---~--~~~~d~iii~G~~~~~~~~~~~ 77 (126)
||+++......+... ....-+.+.+++.|.++.++... .+ +.. + . -..+||||+......
T Consensus 1 ~Ig~i~~~~~~~~~~----~~~~gi~~~~~~~g~~~~~~~~~-~~-~~~~~~~l~~~~~~~vdgii~~~~~~~------- 67 (273)
T cd06305 1 RIAVVRYGGSGDFDQ----AYLAGTKAEAEALGGDLRVYDAG-GD-DAKQADQIDQAIAQKVDAIIIQHGRAE------- 67 (273)
T ss_pred CeEEEeecCCCcHHH----HHHHHHHHHHHHcCCEEEEECCC-CC-HHHHHHHHHHHHHcCCCEEEEecCChh-------
Confidence 467776544333211 12233456667788888776432 11 110 0 0 137999999754111
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 033165 78 ICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGI 98 (126)
...+.++++.+.++|+..+
T Consensus 68 --~~~~~i~~~~~~~ipvV~~ 86 (273)
T cd06305 68 --VLKPWVKRALDAGIPVVAF 86 (273)
T ss_pred --hhHHHHHHHHHcCCCEEEe
Confidence 0122344455567776544
No 267
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=66.26 E-value=20 Score=26.93 Aligned_cols=46 Identities=20% Similarity=0.227 Sum_probs=33.2
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
+..|+++|. .|++ | ..+.+|+. ..+|+.|||-..-..|...|=+++
T Consensus 68 ~GvdaiiIa-----Cf~D-P----gl~~~Re~--~~~PviGi~eAsv~~A~~vgrrfs 113 (230)
T COG4126 68 QGVDAIIIA-----CFSD-P----GLAAARER--AAIPVIGICEASVLAALFVGRRFS 113 (230)
T ss_pred cCCcEEEEE-----ecCC-h----HHHHHHHH--hCCCceehhHHHHHHHHHhcceEE
Confidence 458888885 2343 3 34455655 379999999999999988887665
No 268
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=65.65 E-value=29 Score=25.94 Aligned_cols=59 Identities=10% Similarity=-0.034 Sum_probs=29.6
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGS 67 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~ 67 (126)
+|+++......+.. .....-+.+.+++.|.++.++.....+... ... -..+||||+.+.
T Consensus 1 ~I~vi~~~~~~~f~----~~i~~gi~~~a~~~g~~v~~~~~~~~d~~~~~~~i~~~~~~~~DgiIi~~~ 65 (298)
T cd06302 1 TIAFVPKVTGIPYF----NRMEEGAKEAAKELGVDAIYVGPTTADAAGQVQIIEDLIAQGVDAIAVVPN 65 (298)
T ss_pred CEEEEEcCCCChHH----HHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 46777655443321 123334555666778777765322111000 001 147999999753
No 269
>COG0521 MoaB Molybdopterin biosynthesis enzymes [Coenzyme metabolism]
Probab=65.53 E-value=18 Score=25.93 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=38.1
Q ss_pred CeEEEEEcCCCchHHHHhh-CCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCC-CcCEEEEcCCCCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKY-GGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFG-SYDGYVITGSCNDA 71 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~-~~d~iii~G~~~~~ 71 (126)
.|++|+--.+... ...+ +.=...+.++|++.|.++..+.+..++.... +-+. .+|.|+.+||..-.
T Consensus 8 ~~~~VvTVSd~r~--~~~~~D~sG~~l~~~L~~ag~~~~~~~iV~D~~~~I~~~l~~~~~~~~DvvlttGGTG~t 80 (169)
T COG0521 8 LRIAVVTVSDRRS--TGEYEDKSGPLLVELLEEAGHNVAAYTIVPDDKEQIRATLIALIDEDVDVVLTTGGTGIT 80 (169)
T ss_pred eeEEEEEEecccc--cCCccccchhHHHHHHHHcCCccceEEEeCCCHHHHHHHHHHHhcCCCCEEEEcCCccCC
Confidence 4577776665531 0111 2234578899999998885555544432110 0112 28999999996543
No 270
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=65.53 E-value=26 Score=25.35 Aligned_cols=78 Identities=9% Similarity=0.057 Sum_probs=39.2
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCC--C---C--CCCcCEEEEcCCCCCCCCCch
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDD--D---D--FGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~--~---~--~~~~d~iii~G~~~~~~~~~~ 76 (126)
||+|+..+..++.. .....-+.+.+++ .|.++.+.....+ +.. + . -.+.||+|+.+...+.
T Consensus 1 ~igvi~~~~~~~~~----~~~~~gi~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~~~vdgiii~~~~~~~----- 69 (272)
T cd06301 1 KIGVSMANFDDNFL----TLLRNAMKEHAKVLGGVELQFEDAKND--VATQLSQVENFIAQGVDAIIVVPVDTAA----- 69 (272)
T ss_pred CeeEeecccCCHHH----HHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHHHHHcCCCEEEEecCchhh-----
Confidence 57777765443321 1222334556666 6777776543211 110 0 0 1378999997653111
Q ss_pred HHHHHHHHHHHHHhcCCcEEE
Q 033165 77 WICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlG 97 (126)
..+.++.+.+.++|++.
T Consensus 70 ----~~~~~~~l~~~~iPvv~ 86 (272)
T cd06301 70 ----TAPIVKAANAAGIPLVY 86 (272)
T ss_pred ----hHHHHHHHHHCCCeEEE
Confidence 12234455556777654
No 271
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=65.28 E-value=53 Score=24.24 Aligned_cols=66 Identities=17% Similarity=0.195 Sum_probs=36.1
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
+...|...|..+..+............++.-|.+|+.--... .++..+.++.+.+.+.|+++||-.
T Consensus 18 ~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~-------t~~~~~~~~~a~~~g~~ii~iT~~ 83 (268)
T TIGR00393 18 IVATFASTGTPSFFLHPTEAMHGDLGMVEPNDVVLMISYSGE-------SLELLNLIPHLKRLSHKIIAFTGS 83 (268)
T ss_pred HHHHHHhcCCceEEeCHhHHhhcccCCCCCCCEEEEEeCCCC-------CHHHHHHHHHHHHcCCcEEEEECC
Confidence 445555667776655432211111123445565555422111 134666778888889999999964
No 272
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=64.71 E-value=29 Score=27.90 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=36.1
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEE---EEchHHHHH-HHHhCCccc
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVL---GICFGHQVR-AITVFSSHI 114 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pvl---GIC~G~Q~l-a~~~Gg~v~ 114 (126)
...|+|+++|......|..+.......-+++.+..++||+ ||..|..++ |.++|++..
T Consensus 244 ~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV 305 (367)
T PLN02493 244 AGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 305 (367)
T ss_pred cCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEE
Confidence 4789999997654433433222222222333344468887 788999988 778898765
No 273
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=64.69 E-value=20 Score=28.17 Aligned_cols=66 Identities=18% Similarity=0.109 Sum_probs=40.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCCCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGSCND 70 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~~~~ 70 (126)
.+++||-.+..... -+.+++...++..+|++.|.++..+.+..++... ... .+++|.||.+||.+.
T Consensus 156 ~~~aIltvsde~~~-G~i~Dsn~~~L~~~L~~~G~~v~~~~iVpDD~~~I~~al~~a~~~~~DlIITTGGtg~ 227 (312)
T PRK03604 156 TSAAVLVLSDSIAA-GTKEDRSGKLIVEGLEEAGFEVSHYTIIPDEPAEIAAAVAAWIAEGYALIITTGGTGL 227 (312)
T ss_pred cEEEEEEECCcCCC-CcEEEhHHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHhhhCCCCEEEECCCCCC
Confidence 36667766664321 1123456678889999999988777655443110 011 246999999998543
No 274
>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=64.53 E-value=31 Score=25.01 Aligned_cols=59 Identities=7% Similarity=-0.075 Sum_probs=29.6
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC---CCCC--CCCCcCEEEEcCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF---PDDD--DFGSYDGYVITGS 67 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~---p~~~--~~~~~d~iii~G~ 67 (126)
+|+|+-.+..++. |.....-+.+.+++.|.++.++....+.- .... .-..+||+|+.+.
T Consensus 1 ~i~vi~~~~~~~~----~~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (277)
T cd06319 1 QIAYIVSDLRIPF----WQIMGRGVKSKAKALGYDAVELSAENSAKKELENLRTAIDKGVSGIIISPT 64 (277)
T ss_pred CeEEEeCCCCchH----HHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 4677765444332 11233334455666787777654321100 0000 1257999998754
No 275
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=64.28 E-value=27 Score=25.38 Aligned_cols=43 Identities=5% Similarity=-0.127 Sum_probs=24.4
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCCCC---C--CCCCcCEEEEcCC
Q 033165 25 YFGVFVRMLAEEGETWDVFHVARGEFPDD---D--DFGSYDGYVITGS 67 (126)
Q Consensus 25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p~~---~--~~~~~d~iii~G~ 67 (126)
...-+.+.+++.|.++.++....+.-... . .-..+||+|+.+.
T Consensus 17 ~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 17 ETKSIKDAAEKRGFDLKFADAQQKQENQISAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 33445566677888888875432110000 0 0147999999764
No 276
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=63.67 E-value=9.5 Score=28.41 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=32.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC----CCCCC----CCCCCCcCEEEEcC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR----GEFPD----DDDFGSYDGYVITG 66 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~----~~~p~----~~~~~~~d~iii~G 66 (126)
|..+||+|-...+. ...+.+.|++.|.++..+..-+ .+.+. ...+.+||.||++-
T Consensus 1 ~~g~~vlvTRp~~~-----------~~~l~~~l~~~G~~~~~~P~i~i~p~~~~~~~~~~l~~l~~~d~iifTS 63 (255)
T PRK05752 1 MSGWRLLLTRPAEE-----------CAALAASLAEAGIFSSSLPLLAIEPLPETPEQRALLLELDRYCAVIVVS 63 (255)
T ss_pred CCCCEEEECCcHHH-----------HHHHHHHHHHcCCCEEEcCcEEEeeCCCCHHHHHHHhcCCCCCEEEEEC
Confidence 67778777644332 2347788888998766543221 00000 02467999999983
No 277
>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems. Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem
Probab=62.89 E-value=33 Score=24.23 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=31.2
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-----CCCCcCEEEEcCCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-----DFGSYDGYVITGSC 68 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-----~~~~~d~iii~G~~ 68 (126)
||+++-.....+.. .++..-+.+.+++.|.++.++....+.-...+ .-.++|++|+.+..
T Consensus 1 ~ig~v~~~~~~~~~----~~~~~g~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~ 65 (264)
T cd01537 1 TIGVLVPDLDNPFF----AQVLKGIEEAAKAAGYQVLLANSQNDAEKQLSALENLIARGVDGIIIAPSD 65 (264)
T ss_pred CeEEEEcCCCChHH----HHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCC
Confidence 46777655432211 12344455667778888776654321000000 01379999997653
No 278
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=62.84 E-value=40 Score=21.99 Aligned_cols=21 Identities=19% Similarity=0.166 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhcCCcEEEEch
Q 033165 80 KLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC~ 100 (126)
+..+.++.+.+++.|+++|+-
T Consensus 62 ~~~~~~~~a~~~g~~vi~iT~ 82 (120)
T cd05710 62 ETVAAAKFAKEKGATVIGLTD 82 (120)
T ss_pred HHHHHHHHHHHcCCeEEEEEC
Confidence 355667777778999999985
No 279
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=62.71 E-value=26 Score=25.53 Aligned_cols=81 Identities=14% Similarity=-0.010 Sum_probs=42.4
Q ss_pred eEEEEEcCC-CchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----C--CCCCcCEEEEcCCCCCCCCCch
Q 033165 5 KFAVLLCAE-DSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----D--DFGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 5 ki~Il~~~~-~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~--~~~~~d~iii~G~~~~~~~~~~ 76 (126)
||+++..+. .++.. .+...-+.+.+++.|.++.++.....+ +.. + .-...|++|+.+... +
T Consensus 1 ~i~~i~~~~~~~~~~----~~~~~g~~~~~~~~g~~v~~~~~~~~~-~~~~~~~i~~l~~~~vdgiii~~~~~---~--- 69 (271)
T cd06312 1 KIAFVTHGPAGDPFW----TVVKNGAEDAAKDLGVDVEYRGPETFD-VADMARLIEAAIAAKPDGIVVTIPDP---D--- 69 (271)
T ss_pred CEEEecCCCCCCcHH----HHHHHHHHHHHHHhCCEEEEECCCCCC-HHHHHHHHHHHHHhCCCEEEEeCCCh---H---
Confidence 577777554 33221 122334556667778888776543201 110 0 014799999976421 1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEc
Q 033165 77 WICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
...+.++.+.+.++|++-+-
T Consensus 70 ---~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 70 ---ALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred ---HhHHHHHHHHHCCCeEEEeC
Confidence 11223455555678887763
No 280
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=62.16 E-value=43 Score=24.08 Aligned_cols=32 Identities=13% Similarity=0.068 Sum_probs=23.3
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
..+|.||+.... . ....++++.+.++|+.|+|
T Consensus 126 ~~Pdlviv~~~~----~-------~~~ai~Ea~~l~IP~I~i~ 157 (193)
T cd01425 126 RLPDLVIVLDPR----K-------EHQAIREASKLGIPVIAIV 157 (193)
T ss_pred cCCCEEEEeCCc----c-------chHHHHHHHHcCCCEEEEe
Confidence 468899998642 1 1234777778899999998
No 281
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=61.88 E-value=65 Score=24.13 Aligned_cols=78 Identities=14% Similarity=0.077 Sum_probs=42.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC---C-CC---CCC--------CCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR---G-EF---PDD--------DDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~---~-~~---p~~--------~~~~~~d~iii~G~ 67 (126)
.+||+|+- |.... -...+.++|++.|+++..+.-.. + ++ +.. ....+.|+|++++.
T Consensus 120 ~~RIalvT---PY~~~------v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisCT 190 (239)
T TIGR02990 120 VRRISLLT---PYTPE------TSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSCT 190 (239)
T ss_pred CCEEEEEC---CCcHH------HHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeCC
Confidence 47888883 32221 12357888999999886552111 0 01 000 02357999999977
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
..... +.+++ +.+ +-++||+-.
T Consensus 191 nLrt~---~vi~~----lE~--~lGkPVlsS 212 (239)
T TIGR02990 191 ALRAA---TCAQR----IEQ--AIGKPVVTS 212 (239)
T ss_pred CchhH---HHHHH----HHH--HHCCCEEEH
Confidence 54332 12222 211 138999875
No 282
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=61.62 E-value=32 Score=24.78 Aligned_cols=79 Identities=13% Similarity=0.149 Sum_probs=44.8
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE-EccCCCCCC----CC--CCCCcCEEEEcCCCCCCCCCchHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF-HVARGEFPD----DD--DFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~p~----~~--~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
|+|+-.....+... .+..-+.+..++.|.++.++ ... .+... .+ .-.++|+||+.......
T Consensus 1 I~vi~~~~~~~~~~----~~~~g~~~~a~~~g~~~~~~~~~~-~d~~~q~~~i~~~i~~~~d~Iiv~~~~~~~------- 68 (257)
T PF13407_consen 1 IGVIVPSMDNPFWQ----QVIKGAKAAAKELGYEVEIVFDAQ-NDPEEQIEQIEQAISQGVDGIIVSPVDPDS------- 68 (257)
T ss_dssp EEEEESSSSSHHHH----HHHHHHHHHHHHHTCEEEEEEEST-TTHHHHHHHHHHHHHTTESEEEEESSSTTT-------
T ss_pred cEEEeCCCCCHHHH----HHHHHHHHHHHHcCCEEEEeCCCC-CCHHHHHHHHHHHHHhcCCEEEecCCCHHH-------
Confidence 56666666654211 23334556667788888886 322 11000 00 01579999998663221
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 033165 79 CKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGI 98 (126)
....++++.++++|++.+
T Consensus 69 --~~~~l~~~~~~gIpvv~~ 86 (257)
T PF13407_consen 69 --LAPFLEKAKAAGIPVVTV 86 (257)
T ss_dssp --THHHHHHHHHTTSEEEEE
T ss_pred --HHHHHHHHhhcCceEEEE
Confidence 224566677788998875
No 283
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=61.49 E-value=38 Score=25.04 Aligned_cols=79 Identities=19% Similarity=0.077 Sum_probs=41.7
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC--C-----CCCCcCEEEEcCCCCCCCCCchH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD--D-----DFGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~--~-----~~~~~d~iii~G~~~~~~~~~~~ 77 (126)
+|+|+..+..++.. .....-+.+.+++.|.++.++....+ +.. + .-..+||||+.+...+.
T Consensus 1 ~I~vi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~i~~~~~~~vdgiii~~~~~~~------ 68 (288)
T cd01538 1 KIGLSLPTKTEERW----IRDRPNFEAALKELGAEVIVQNANGD--PAKQISQIENMIAKGVDVLVIAPVDGEA------ 68 (288)
T ss_pred CeEEEEeCCCcHHH----HHHHHHHHHHHHHcCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEecCChhh------
Confidence 36677655443321 12333455666778888887764321 110 0 11479999997642111
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 033165 78 ICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++++.+.++|+..+
T Consensus 69 ---~~~~l~~l~~~~ipvV~~ 86 (288)
T cd01538 69 ---LASAVEKAADAGIPVIAY 86 (288)
T ss_pred ---HHHHHHHHHHCCCCEEEE
Confidence 122344555567887655
No 284
>PRK14498 putative molybdopterin biosynthesis protein MoeA/LysR substrate binding-domain-containing protein; Provisional
Probab=60.70 E-value=8.9 Score=32.59 Aligned_cols=67 Identities=9% Similarity=0.088 Sum_probs=43.2
Q ss_pred CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~ 69 (126)
++|++|+-++..--. .-.-+++...++..++++.|.++..+.+..++.... +-++++|.||.+||.+
T Consensus 186 ~prv~vi~tG~El~~~~~~~~~g~i~dsn~~~l~~~l~~~g~~~~~~~~v~Dd~~~i~~~l~~~~~~~D~iIttGG~s 263 (633)
T PRK14498 186 KPRVGIISTGDELVEPGEPLKPGKIYDVNSYTLAAAVEEAGGEPVRYGIVPDDEEELEAALRKALKECDLVLLSGGTS 263 (633)
T ss_pred CcEEEEEecCccccCCCCCCCCCEEEEChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEECCCCc
Confidence 479999988754210 011245677788899999999887665544432110 1124799999999954
No 285
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=59.88 E-value=45 Score=25.77 Aligned_cols=97 Identities=15% Similarity=0.101 Sum_probs=50.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CCC---CCCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EFP---DDDDFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p---~~~~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
|+|+.++-+...-. .+-..+...+...|++.+.+.+.+..... +.. .....+.||.||..||-..
T Consensus 2 ~~~~~~i~Np~sG~---~~~~~~~~~~~~~l~~~g~~~~~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGT-------- 70 (301)
T COG1597 2 MKKALLIYNPTSGK---GKAKKLLREVEELLEEAGHELSVRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGT-------- 70 (301)
T ss_pred CceEEEEEcccccc---cchhhHHHHHHHHHHhcCCeEEEEEeecCccHHHHHHHHHhcCCCEEEEecCcch--------
Confidence 45555555543321 11123556677888889988877665432 110 0012247999999999543
Q ss_pred HHHHHHHHHHHhcCCcEEEE--chHHHHHHHHhCCc
Q 033165 79 CKLIALLKQLDSLRKKVLGI--CFGHQVRAITVFSS 112 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGI--C~G~Q~la~~~Gg~ 112 (126)
+.+.+..+.+.+.|.||| |-=.=.+|+++|-+
T Consensus 71 --v~evingl~~~~~~~LgilP~GT~NdfAr~Lgip 104 (301)
T COG1597 71 --VNEVANGLAGTDDPPLGILPGGTANDFARALGIP 104 (301)
T ss_pred --HHHHHHHHhcCCCCceEEecCCchHHHHHHcCCC
Confidence 233445555555554444 12223344555443
No 286
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=58.72 E-value=41 Score=24.37 Aligned_cols=81 Identities=9% Similarity=-0.002 Sum_probs=38.4
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCCCCCC---CC--CCCCcCEEEEcCCCCCCCCCchHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARGEFPD---DD--DFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~p~---~~--~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
||+++..+-.++.. ..+...+.+.+++. |.++.++....+.-.. .+ .-..+|+||+.+...+.
T Consensus 1 ~ig~~~~~~~~~~~----~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~~~~~------- 69 (270)
T cd06308 1 VIGFSQCNLADPWR----AAMNDEIQREASNYPDVELIIADAADDNSKQVADIENFIRQGVDLLIISPNEAAP------- 69 (270)
T ss_pred CEEEEeeCCCCHHH----HHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHhCCCEEEEecCchhh-------
Confidence 46666644333211 12333455556654 7777765432111000 00 01478999997642211
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 033165 79 CKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++.+.+.++|+.-+
T Consensus 70 --~~~~~~~~~~~~ipvV~~ 87 (270)
T cd06308 70 --LTPVVEEAYRAGIPVILL 87 (270)
T ss_pred --chHHHHHHHHCCCCEEEe
Confidence 112234444567887655
No 287
>PLN02979 glycolate oxidase
Probab=58.03 E-value=44 Score=26.88 Aligned_cols=58 Identities=16% Similarity=0.110 Sum_probs=35.8
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEE---EEchHHHHH-HHHhCCccc
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVL---GICFGHQVR-AITVFSSHI 114 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pvl---GIC~G~Q~l-a~~~Gg~v~ 114 (126)
...|+|+++|......+..+.......-+++.+..++||+ ||-.|..++ |.++|++..
T Consensus 243 ~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV 304 (366)
T PLN02979 243 AGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGI 304 (366)
T ss_pred cCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEE
Confidence 4789999997654443433222222222333333468887 788999887 778898754
No 288
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=57.72 E-value=48 Score=21.31 Aligned_cols=65 Identities=9% Similarity=-0.042 Sum_probs=34.5
Q ss_pred HHHHHhhCC-CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 29 FVRMLAEEG-ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 29 ~~~~l~~~g-~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
+...|.+.+ ..+..+...... .....+.+-|.+|+.--.... .+..+.++.+.+++.|+++|+--
T Consensus 17 ~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~I~iS~sG~t-------~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 17 AKYLLERLAGIPVEVEAASEFR-YRRPLLDEDTLVIAISQSGET-------ADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred HHHHHHHhcCCceEEEehhHhh-hcCCCCCCCcEEEEEeCCcCC-------HHHHHHHHHHHHcCCeEEEEECC
Confidence 445555554 666655522111 111134455555543221111 23566777777789999999964
No 289
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=57.61 E-value=73 Score=23.32 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=23.6
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
...+|.||+..- ..+ ...++++.+.++|+.|+|-
T Consensus 106 ~~~Pdlliv~dp----~~~-------~~Av~EA~~l~IP~Iai~D 139 (196)
T TIGR01012 106 FREPEVVVVTDP----RAD-------HQALKEASEVGIPIVALCD 139 (196)
T ss_pred cCCCCEEEEECC----ccc-------cHHHHHHHHcCCCEEEEee
Confidence 456888998743 121 2346777778999999994
No 290
>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=57.35 E-value=42 Score=24.69 Aligned_cols=60 Identities=13% Similarity=-0.039 Sum_probs=31.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CC--CCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DD--DFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~--~~~~~d~iii~G~ 67 (126)
++|+++..+..++. +..+..-+.+.+++.|.++.+.....+.-.. .+ .-.++||+|+.+.
T Consensus 1 ~~ig~i~~~~~~~~----~~~~~~gi~~~a~~~gy~~~~~~~~~~~~~~~~~i~~l~~~~vdgiil~~~ 65 (280)
T cd06315 1 KNIIFVASDLKNGG----ILGVGEGVREAAKAIGWNLRILDGRGSEAGQAAALNQAIALKPDGIVLGGV 65 (280)
T ss_pred CeEEEEecccCCcH----HHHHHHHHHHHHHHcCcEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 46787776544322 1123334446666778777665432110000 00 1257999999864
No 291
>PRK01355 azoreductase; Reviewed
Probab=57.30 E-value=48 Score=23.74 Aligned_cols=43 Identities=5% Similarity=0.051 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHH----hh--CCCeEEEEEccCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRML----AE--EGETWDVFHVARGEF 50 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l----~~--~g~~~~~~~~~~~~~ 50 (126)
|+||++|...+... .++++..+.+.+ ++ .+.+++++++.+..+
T Consensus 1 M~kIliI~gSpr~~-----~~s~s~~l~~~~~~~~~~~~~~~~v~~~dL~~~~~ 49 (199)
T PRK01355 1 MSKVLVIKGSMVAK-----EKSFSSALTDKFVEEYKKVNPNDEIIILDLNETKV 49 (199)
T ss_pred CCeEEEEECCCCCC-----CCcHHHHHHHHHHHHHHHhCCCCeEEEEeCCCCCC
Confidence 57999998887521 135555555444 44 357888888765444
No 292
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=57.16 E-value=70 Score=22.96 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=46.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHH----HHHhhCCCeEEEEEccCCCCC--------CC------CCCCCcCEEEEc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFV----RMLAEEGETWDVFHVARGEFP--------DD------DDFGSYDGYVIT 65 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~~~p--------~~------~~~~~~d~iii~ 65 (126)
|||+++...+.. +|++..+. +.+.+.|.+++++++.+-... .+ +.+.+.|+||+.
T Consensus 1 mkIl~I~GSpr~-------~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~ 73 (191)
T PRK10569 1 MRVITLAGSPRF-------PSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVA 73 (191)
T ss_pred CEEEEEEcCCCC-------CChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEE
Confidence 488898776653 35555444 344557888988876531110 00 123567888875
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 66 GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 66 G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
---+.. .-...++.+.+++..-.=.++|++=++.
T Consensus 74 tP~Y~~-s~pg~LKn~iD~l~~~~l~~K~v~iiat 107 (191)
T PRK10569 74 TPVYKA-SFSGALKTLLDLLPERALEHKVVLPLAT 107 (191)
T ss_pred CCccCC-CCCHHHHHHHHhCChhhhCCCEEEEEEe
Confidence 322211 1113344455555321124778775654
No 293
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=57.00 E-value=86 Score=23.92 Aligned_cols=90 Identities=17% Similarity=0.056 Sum_probs=48.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEE-cCCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI-TGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii-~G~~~~~~~~~~~~~~~~ 82 (126)
.||.+.-.+.....++ .+...|...|.....++...........+..-|.+|+ +.+..+ ....
T Consensus 43 ~~I~i~G~G~S~~~A~--------~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~t--------~~~~ 106 (321)
T PRK11543 43 GKVVVSGIGKSGHIGK--------KIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGA--------KELD 106 (321)
T ss_pred CcEEEEecChhHHHHH--------HHHHHHHcCCCceeecChHHHhhCCcCccCCCCEEEEEeCCCCc--------HHHH
Confidence 3677777765543222 2455555677776655432110011123445565554 333221 3466
Q ss_pred HHHHHHHhcCCcEEEEch-HHHHHHHHh
Q 033165 83 ALLKQLDSLRKKVLGICF-GHQVRAITV 109 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~-G~Q~la~~~ 109 (126)
+.++.+.+++.|+++|+- +.--|++..
T Consensus 107 ~~~~~ak~~g~~vI~iT~~~~s~la~~a 134 (321)
T PRK11543 107 LIIPRLEDKSIALLAMTGKPTSPLGLAA 134 (321)
T ss_pred HHHHHHHHcCCeEEEEECCCCChhHHhC
Confidence 677778888999999985 444455543
No 294
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=56.84 E-value=30 Score=26.12 Aligned_cols=50 Identities=10% Similarity=-0.067 Sum_probs=33.8
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH--------------------HHHHHHHhCCcccc
Q 033165 61 GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG--------------------HQVRAITVFSSHIN 115 (126)
Q Consensus 61 ~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G--------------------~Q~la~~~Gg~v~~ 115 (126)
.|+++.|..+. . ...+.++++.+.+.++++..|.+| ++-||..-||+...
T Consensus 168 iIllTDG~~~~-~----~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~ 237 (296)
T TIGR03436 168 LIVISDGGDNR-S----RDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFY 237 (296)
T ss_pred EEEEecCCCcc-h----HHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEec
Confidence 56667663321 1 123445566666679999999986 78889999998655
No 295
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=56.68 E-value=53 Score=25.28 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=44.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----CC--CCCcCEEEEcCCCCCCCCCch
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----DD--FGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~~--~~~~d~iii~G~~~~~~~~~~ 76 (126)
..+|+++..+...+.. .....-+.+.+++.|.++.+.....+. ... .. -..+||+|+.+...+.
T Consensus 25 ~~~Ig~i~~~~~~~f~----~~~~~gi~~~a~~~g~~l~i~~~~~~~-~~~~~~i~~l~~~~vDGiIi~~~~~~~----- 94 (330)
T PRK10355 25 EVKIGMAIDDLRLERW----QKDRDIFVKKAESLGAKVFVQSANGNE-ETQMSQIENMINRGVDVLVIIPYNGQV----- 94 (330)
T ss_pred CceEEEEecCCCchHH----HHHHHHHHHHHHHcCCEEEEECCCCCH-HHHHHHHHHHHHcCCCEEEEeCCChhh-----
Confidence 3678888876655421 223334556677788888877543211 000 01 1489999998642110
Q ss_pred HHHHHHHHHHHHHhcCCcEEEE
Q 033165 77 WICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++.+.++++|++-+
T Consensus 95 ----~~~~l~~~~~~~iPvV~i 112 (330)
T PRK10355 95 ----LSNVIKEAKQEGIKVLAY 112 (330)
T ss_pred ----HHHHHHHHHHCCCeEEEE
Confidence 122344555567777655
No 296
>PRK01966 ddl D-alanyl-alanine synthetase A; Reviewed
Probab=56.52 E-value=33 Score=26.62 Aligned_cols=45 Identities=13% Similarity=0.041 Sum_probs=30.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR 47 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 47 (126)
|+++||+||--+...+.-.+- .-...+.+.|.+.+.++..+.+..
T Consensus 1 m~~~~i~vl~GG~S~E~~vSl--~s~~~v~~~l~~~~~~~~~~~~~~ 45 (333)
T PRK01966 1 MMKMRVALLFGGRSAEHEVSL--VSAKSVLKALDKEKYEVVPIGITK 45 (333)
T ss_pred CCCcEEEEEeCCCCCcchhhH--HHHHHHHHHhcccCCEEEEEEECC
Confidence 888999999988877532221 123456678888888887776654
No 297
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=55.64 E-value=40 Score=22.98 Aligned_cols=76 Identities=14% Similarity=0.054 Sum_probs=42.4
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-----CCCCcCEEEEcCCCCCCCCCc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-----DFGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-----~~~~~d~iii~G~~~~~~~~~ 75 (126)
|..+|+++.-...+....- -.++..+|+..|+++...-.. .|..+ .-.+.|.|.++-... ...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG------~~iv~~~lr~~G~eVi~LG~~---vp~e~i~~~a~~~~~d~V~lS~~~~---~~~ 68 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVG------NKILDRALTEAGFEVINLGVM---TSQEEFIDAAIETDADAILVSSLYG---HGE 68 (137)
T ss_pred CCCCEEEEEeCCCChhHHH------HHHHHHHHHHCCCEEEECCCC---CCHHHHHHHHHHcCCCEEEEcCccc---cCH
Confidence 6778887776666543322 235667888888776544321 23211 124788888875422 223
Q ss_pred hHHHHHHHHHHHH
Q 033165 76 VWICKLIALLKQL 88 (126)
Q Consensus 76 ~~~~~~~~~i~~~ 88 (126)
.+..++.+.+++.
T Consensus 69 ~~~~~~~~~L~~~ 81 (137)
T PRK02261 69 IDCRGLREKCIEA 81 (137)
T ss_pred HHHHHHHHHHHhc
Confidence 4555555555544
No 298
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=55.57 E-value=86 Score=25.65 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
.+|++|+-.+..-. -..++|.+.|.++.+...
T Consensus 8 ~~~v~v~G~G~sG~-----------~~~~~l~~~g~~v~~~d~ 39 (468)
T PRK04690 8 GRRVALWGWGREGR-----------AAYRALRAHLPAQALTLF 39 (468)
T ss_pred CCEEEEEccchhhH-----------HHHHHHHHcCCEEEEEcC
Confidence 46888887765321 245677788887766653
No 299
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=55.49 E-value=1.3e+02 Score=25.41 Aligned_cols=82 Identities=21% Similarity=0.107 Sum_probs=44.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCC--CCCCCCCcCEEEEcCCCCCCCCCchHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFP--DDDDFGSYDGYVITGSCNDAHGNDVWIC 79 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p--~~~~~~~~d~iii~G~~~~~~~~~~~~~ 79 (126)
++||+++......... + ...+.+.|+ .+.++.-+++.. +..| .++++.++|.+||.|-..+. . +
T Consensus 183 ~~~V~~l~ghGE~~~~-----~-~~~l~~~L~-~~y~v~~l~l~~~~~~~~~ip~~l~d~d~LvI~~P~~~l-s-----~ 249 (552)
T TIGR03521 183 EKRIAVLKGNGELADL-----Q-IADLVSTLK-EYYFIAPFTLDSVAANPAKTLADLKKFDLIVIAKPTEAF-S-----E 249 (552)
T ss_pred CceEEEEeCCCCCChH-----H-HHHHHHHHH-hcCceeeecchhcccCcccccccccCcCEEEEeCCCccC-C-----H
Confidence 4688888866443211 1 123455565 566666555531 1111 12345689999998763222 2 3
Q ss_pred HHHHHHHHHHhcCCcEEE
Q 033165 80 KLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlG 97 (126)
.....|++++++|-+++-
T Consensus 250 ~e~~~Ldqfl~~GG~ll~ 267 (552)
T TIGR03521 250 REKYILDQYIMNGGKALF 267 (552)
T ss_pred HHHHHHHHHHHcCCeEEE
Confidence 455567777777666543
No 300
>PRK12359 flavodoxin FldB; Provisional
Probab=55.06 E-value=74 Score=22.60 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=28.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCC-eEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGE-TWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~-~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
||++|+....+-. +..+.+.+++ .+. .++++++... . ++++.+||.||+.-+
T Consensus 1 Mki~I~Y~S~TGN---------Te~vAe~I~~~lg~~~v~v~~i~~~--~-~~~l~~yD~iIlG~p 54 (172)
T PRK12359 1 MKIGLFYGSSTCY---------TEMAAEKIRDIIGEELVDLHNLKDD--P-PKLMEQYDVLILGIP 54 (172)
T ss_pred CeEEEEEECCCCH---------HHHHHHHHHHHhCCCeEEEEEcccC--C-hhHHccCCEEEEEec
Confidence 5888887766531 2334444432 343 3566665432 1 235788997777543
No 301
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=54.59 E-value=32 Score=22.10 Aligned_cols=90 Identities=16% Similarity=0.060 Sum_probs=45.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
..||.|+-.+......+ .+...|.+.+............... ...+++-|.+|+..-... . .+.
T Consensus 5 ~~~i~i~G~G~s~~~A~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~is~sg~----~---~~~ 69 (131)
T PF01380_consen 5 AKRIYIYGSGSSYGVAQ--------YAALKLQKLGRIVVISYEAGEFFHGPLENLDPDDLVIIISYSGE----T---REL 69 (131)
T ss_dssp SSEEEEEESTHHHHHHH--------HHHHHHHHHHSSEEEEEEHHHHHTTGGGGCSTTEEEEEEESSST----T---HHH
T ss_pred CCEEEEEEcchHHHHHH--------HHHHHHHHhcCcceeccchHHHhhhhcccccccceeEeeecccc----c---hhh
Confidence 46788887766544322 2344444444444333222110111 123455565655432111 1 345
Q ss_pred HHHHHHHHhcCCcEEEEc-hHHHHHHH
Q 033165 82 IALLKQLDSLRKKVLGIC-FGHQVRAI 107 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC-~G~Q~la~ 107 (126)
.+.++.+.+.+.|++.|| ...--+++
T Consensus 70 ~~~~~~ak~~g~~vi~iT~~~~~~l~~ 96 (131)
T PF01380_consen 70 IELLRFAKERGAPVILITSNSESPLAR 96 (131)
T ss_dssp HHHHHHHHHTTSEEEEEESSTTSHHHH
T ss_pred hhhhHHHHhcCCeEEEEeCCCCCchhh
Confidence 666777777899999998 33334444
No 302
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=53.73 E-value=69 Score=24.90 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=42.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCCCCCCCCCch
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~~~~~~~~~~ 76 (126)
..||+++-.....+... ....-+.+..++.|.++.+..+...+... .+. -.++|+|++.+. ++
T Consensus 23 ~~~i~~v~k~~~~pf~~----~~~~Gi~~aa~~~G~~v~~~~~~~~d~~~q~~~i~~li~~~vdgIiv~~~--d~----- 91 (336)
T PRK15408 23 AERIAFIPKLVGVGFFT----SGGNGAKEAGKELGVDVTYDGPTEPSVSGQVQLINNFVNQGYNAIIVSAV--SP----- 91 (336)
T ss_pred CcEEEEEECCCCCHHHH----HHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEecC--CH-----
Confidence 36888887666655322 12223455666778877653322211000 011 157999999632 11
Q ss_pred HHHHHHHHHHHHHhcCCcEEE
Q 033165 77 WICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlG 97 (126)
..+...++++.++++|++-
T Consensus 92 --~al~~~l~~a~~~gIpVV~ 110 (336)
T PRK15408 92 --DGLCPALKRAMQRGVKVLT 110 (336)
T ss_pred --HHHHHHHHHHHHCCCeEEE
Confidence 1233455566666777644
No 303
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=53.72 E-value=15 Score=31.68 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=43.3
Q ss_pred CCeEEEEEcCCCchH-------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----CC-C-CCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEY-------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----DD-F-GSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~-------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~~-~-~~~d~iii~G~~~ 69 (126)
++|++|+-++..--. .-+-+++...++..++++.|.++..+.+..++.... .. + .++|.||++||..
T Consensus 181 kprV~visTGdELv~~g~~~~~~g~i~dsN~~~L~a~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~DlvItTGGts 260 (659)
T PLN02699 181 RPTVAILSTGDELVEPTTGTLGRGQIRDSNRAMLLAAAIQQQCKVVDLGIARDDEEELERILDEAISSGVDILLTSGGVS 260 (659)
T ss_pred CCeEEEEeCCcccccCCCCCCCCCcEEeChHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 578999988765310 112245677789999999999887765543332110 11 2 3689999999854
No 304
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=53.70 E-value=27 Score=28.22 Aligned_cols=62 Identities=13% Similarity=0.048 Sum_probs=41.9
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCcccccccc
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAGTAFC 125 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~~~g~~~~ 125 (126)
..+.|+|-++=+|.-+-. ....+.....-+.+..+|+++| |.+.|++|-.+.+.. .++|||-
T Consensus 101 p~dldaIAVT~gPGl~ls---L~vGl~fA~glA~~l~kPlipV---HHMeAHAL~~rl~~~--~v~FPFl 162 (405)
T KOG2707|consen 101 PKDLDAIAVTRGPGLPLS---LKVGLSFAKGLAVKLQKPLIPV---HHMEAHALSIRLVDD--SVRFPFL 162 (405)
T ss_pred cccceeEEEecCCCceee---hhhhHHHHHHHHHhccCCccch---hHHHHhHHHHHhccC--CcCCcee
Confidence 457999999877765422 1122222233344568999999 899999998888765 4777773
No 305
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=53.37 E-value=65 Score=23.17 Aligned_cols=41 Identities=7% Similarity=-0.116 Sum_probs=22.4
Q ss_pred HHHHHHHhhCCCeEEEEEccCCCCCCCC-----CCCCcCEEEEcCC
Q 033165 27 GVFVRMLAEEGETWDVFHVARGEFPDDD-----DFGSYDGYVITGS 67 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~~~~p~~~-----~~~~~d~iii~G~ 67 (126)
.-+.+.+++.|.++.+.....+.-...+ .-...||+|+.+.
T Consensus 19 ~~i~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 19 NAMKEEAKKQKVNLIVSIANQDLNKQLSDVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHHhcCCEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 3455666677888876653211000000 0247999999754
No 306
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=52.95 E-value=69 Score=22.55 Aligned_cols=77 Identities=16% Similarity=0.193 Sum_probs=39.9
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----C--CCCCcCEEEEcCCCCCCCCCchH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----D--DFGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~--~~~~~d~iii~G~~~~~~~~~~~ 77 (126)
+|+++......+... .+..-+...+++.|.++.++....+ +.. . .-.++|++|+.+...+.
T Consensus 1 ~i~~v~~~~~~~~~~----~~~~g~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~iii~~~~~~~------ 68 (264)
T cd06267 1 TIGVIVPDISNPFFA----ELLRGIEEAAREAGYSVLLCNSDED--PEKEREALELLLSRRVDGIILAPSRLDD------ 68 (264)
T ss_pred CEEEEECCCCCHHHH----HHHHHHHHHHHHcCCEEEEEcCCCC--HHHHHHHHHHHHHcCcCEEEEecCCcch------
Confidence 366666655433221 2233445556667877776543211 100 0 01479999998663221
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 033165 78 ICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGI 98 (126)
.. ++.+.+.++|++.+
T Consensus 69 ---~~--~~~~~~~~ipvv~~ 84 (264)
T cd06267 69 ---EL--LEELAALGIPVVLV 84 (264)
T ss_pred ---HH--HHHHHHcCCCEEEe
Confidence 11 44455568887665
No 307
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=52.89 E-value=44 Score=24.42 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=29.7
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-CC-----CCCcCEEEEcCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-DD-----FGSYDGYVITGS 67 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~~-----~~~~d~iii~G~ 67 (126)
||+++..+..++... ....-+.+.+++.|.++.++... +. ... +. -.+.||||+.+.
T Consensus 1 ~Ig~v~~~~~~~~~~----~~~~gi~~~~~~~g~~~~~~~~~-~~-~~~~~~i~~~~~~~~dgiii~~~ 63 (289)
T cd01540 1 KIGFIVKQPEEPWFQ----TEWKFAKKAAKEKGFTVVKIDVP-DG-EKVLSAIDNLGAQGAKGFVICVP 63 (289)
T ss_pred CeeeecCCCCCcHHH----HHHHHHHHHHHHcCCEEEEccCC-CH-HHHHHHHHHHHHcCCCEEEEccC
Confidence 466666544333211 22233456667778887766543 11 100 00 146899999864
No 308
>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2
Probab=52.65 E-value=60 Score=23.03 Aligned_cols=57 Identities=12% Similarity=0.077 Sum_probs=29.3
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----C--CCCCcCEEEEcCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----D--DFGSYDGYVITGS 67 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~--~~~~~d~iii~G~ 67 (126)
||+++..+...+.. .....-+...+++.|.++.++....+ +.. . .-.++|++|+.+.
T Consensus 1 ~ig~i~p~~~~~~~----~~~~~~~~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgvi~~~~ 64 (267)
T cd01536 1 KIGLVVPSLNNPFW----QAMNKGAEAAAKELGVELIVLDAQND--VSKQIQQIEDLIAQGVDGIIISPV 64 (267)
T ss_pred CEEEEeccccCHHH----HHHHHHHHHHHHhcCceEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 57777755432211 11222334555667888777654321 110 0 1137999999765
No 309
>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=51.97 E-value=59 Score=24.37 Aligned_cols=79 Identities=10% Similarity=0.021 Sum_probs=38.9
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhh--CCCeEEEEEccCCCCCC-----CC--CCCCcCEEEEcCCCCCCCCCc
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE--EGETWDVFHVARGEFPD-----DD--DFGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~~p~-----~~--~~~~~d~iii~G~~~~~~~~~ 75 (126)
||+|+.....++. |.....-+.+.++. .|.++.++....+ +. .+ .-..+||+|+.+... +
T Consensus 1 ~Igviv~~~~~~~----~~~~~~gi~~~a~~~~~g~~~~~~~~~~~--~~~q~~~i~~l~~~~vdgiii~~~~~---~-- 69 (303)
T cd01539 1 KIGVFLYKFDDTF----ISLVRKNLEDIQKENGGKVEFTFYDAKNN--QSTQNEQIDTALAKGVDLLAVNLVDP---T-- 69 (303)
T ss_pred CeEEEeeCCCChH----HHHHHHHHHHHHHhhCCCeeEEEecCCCC--HHHHHHHHHHHHHcCCCEEEEecCch---h--
Confidence 5777765443321 11222334455566 5656555543211 11 00 125899999975421 1
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
...+.++.+.+.++|+.-+
T Consensus 70 ----~~~~~~~~~~~~giPvV~~ 88 (303)
T cd01539 70 ----AAQTVINKAKQKNIPVIFF 88 (303)
T ss_pred ----hHHHHHHHHHHCCCCEEEe
Confidence 1223455555568887654
No 310
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=51.89 E-value=59 Score=20.57 Aligned_cols=38 Identities=11% Similarity=0.122 Sum_probs=23.9
Q ss_pred HHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 26 FGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 26 ~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
...+.+.+++.|.++++......+.. +...++|.|+++
T Consensus 16 ~~ki~~~~~~~~~~~~v~~~~~~~~~--~~~~~~Diil~~ 53 (96)
T cd05564 16 VKKMKKAAEKRGIDAEIEAVPESELE--EYIDDADVVLLG 53 (96)
T ss_pred HHHHHHHHHHCCCceEEEEecHHHHH--HhcCCCCEEEEC
Confidence 34567788888988877665432222 135689966665
No 311
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=51.73 E-value=52 Score=24.37 Aligned_cols=53 Identities=32% Similarity=0.359 Sum_probs=37.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC--------CCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD--------DFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~--------~~~~~d~iii~G~ 67 (126)
+||+++......+ .+.+.|...|.+++.+.++....+..+ ....+|+|+++-+
T Consensus 124 ~~vl~~~~~~~r~-----------~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~~~~~~~d~v~ftS~ 184 (248)
T COG1587 124 KRVLILRGNGGRE-----------VLEEKLEERGAEVREVEVYRTEPPPLDEATLIELLKLGEVDAVVFTSS 184 (248)
T ss_pred CeEEEEcCCCchH-----------HHHHHHHhCCCEEEEEeeeeecCCCccHHHHHHHHHhCCCCEEEEeCH
Confidence 5888888877653 366778889999988877754322211 2368999999855
No 312
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.31 E-value=90 Score=22.49 Aligned_cols=82 Identities=16% Similarity=0.142 Sum_probs=40.3
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----CC--CCCcCEEEEcCCCCCCCCCchHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----DD--FGSYDGYVITGSCNDAHGNDVWIC 79 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~~--~~~~d~iii~G~~~~~~~~~~~~~ 79 (126)
|+|+..+..++. |..+..-+.+.+++.|.++.++....+. ... +. -..+||+|+.+...+ +. .
T Consensus 2 Igvi~~~~~~~~----~~~~~~gi~~~~~~~g~~~~~~~~~~~~-~~~~~~i~~l~~~~vdgiIi~~~~~~--~~----~ 70 (273)
T cd06292 2 VGLLVPELSNPI----FPAFAEAIEAALAQYGYTVLLCNTYRGG-VSEADYVEDLLARGVRGVVFISSLHA--DT----H 70 (273)
T ss_pred EEEEeCCCcCch----HHHHHHHHHHHHHHCCCEEEEEeCCCCh-HHHHHHHHHHHHcCCCEEEEeCCCCC--cc----c
Confidence 566655444332 1223344556677788887665532211 000 00 147899999764221 11 0
Q ss_pred HHHHHHHHHHhcCCcEEEE
Q 033165 80 KLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGI 98 (126)
...+.++.+.+.++|+.-+
T Consensus 71 ~~~~~i~~~~~~~ipvV~i 89 (273)
T cd06292 71 ADHSHYERLAERGLPVVLV 89 (273)
T ss_pred chhHHHHHHHhCCCCEEEE
Confidence 1122334444567787555
No 313
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=51.11 E-value=17 Score=27.65 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=25.6
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
+++|.+|+.||- ..++...+.+...++|++||=.|.
T Consensus 75 ~~~D~ii~lGGD----------GT~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 75 EGVDLIIVLGGD----------GTFLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp CCSSEEEEEESH----------HHHHHHHHHCTTST-EEEEEESSS
T ss_pred cCCCEEEEECCC----------HHHHHHHHHhccCCCcEEeecCCC
Confidence 689999999992 334555666555589999997763
No 314
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=51.08 E-value=27 Score=25.13 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=21.8
Q ss_pred CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
++...|.|++-.... ++ .+..++.+++.+.++|+.+||
T Consensus 78 ~lt~~DRVllfs~~~---~~----~e~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 78 ELTETDRVLLFSPFS---TD----EEAVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp ---TT-EEEEEES-S---------HHHHHHHHHHHHHT--EEEEE
T ss_pred cccccceEEEEeCCC---CC----HHHHHHHHHHHHCCCCEEEEE
Confidence 467788888864322 11 345667788888999999999
No 315
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=51.07 E-value=55 Score=21.49 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCCeEEEEEccCCCCC-CC---CCCCCc-CEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcC
Q 033165 27 GVFVRMLAEEGETWDVFHVARGEFP-DD---DDFGSY-DGYVITGSCNDAHGNDVWICKLIALLKQLDSLR 92 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~~~~p-~~---~~~~~~-d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~ 92 (126)
..+.+.++..+.+++++.....+.. .. .....+ |.||+.||- ..+.+.+..+.+..
T Consensus 18 ~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv~GGD----------GTl~~vv~~l~~~~ 78 (130)
T PF00781_consen 18 KKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVVVGGD----------GTLNEVVNGLMGSD 78 (130)
T ss_dssp HHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEEEESH----------HHHHHHHHHHCTST
T ss_pred HHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEEEcCc----------cHHHHHHHHHhhcC
Confidence 4567788888888887765431100 00 123555 999999992 23445566555544
No 316
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=50.80 E-value=83 Score=22.50 Aligned_cols=56 Identities=9% Similarity=0.090 Sum_probs=30.1
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
|+|+-.+..++.. ..+..-+.+.+++.|.++.++....+ +.. .. -..+||+|+.++
T Consensus 2 i~vi~~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 2 VGVIIPDITNSYF----AELARGIDDIATMYKYNIILSNSDND--KEKELKVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred EEEEECCCcchHH----HHHHHHHHHHHHHcCCeEEEEeCCCC--HHHHHHHHHHHHHhcCCEEEEeCC
Confidence 5666554443321 12333455667777888877654221 110 01 147999999865
No 317
>PLN02699 Bifunctional molybdopterin adenylyltransferase/molybdopterin molybdenumtransferase
Probab=50.61 E-value=52 Score=28.51 Aligned_cols=68 Identities=12% Similarity=-0.015 Sum_probs=35.0
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh----C-CCeEEEEEccCCCCCC----CCC---CCCcCEEEEcCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE----E-GETWDVFHVARGEFPD----DDD---FGSYDGYVITGSC 68 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~----~-g~~~~~~~~~~~~~p~----~~~---~~~~d~iii~G~~ 68 (126)
|.++|++||-.+.....-. .-+.....+.++++. . |.++..+.+..++... ... .+.+|.||.+||.
T Consensus 456 ~~~~rvaIIt~sde~~~~~-~~D~sg~~~~~il~~n~~~l~G~~v~~~~iv~Dd~~~I~~~l~~~~~~~~~DlVItTGGt 534 (659)
T PLN02699 456 NPEVKVAILTVSDTVSSGA-GPDRSGPRAVSVVNSSSEKLGGAKVVATAVVPDDVEKIKDVLQKWSDIDRMDLILTLGGT 534 (659)
T ss_pred cCCcEEEEEEECCcccCCC-cccccchHHHHHHHhhhhhcCCcEEEEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCc
Confidence 3468999998877532100 001112233444433 3 7776655544332110 011 2579999999985
Q ss_pred C
Q 033165 69 N 69 (126)
Q Consensus 69 ~ 69 (126)
.
T Consensus 535 s 535 (659)
T PLN02699 535 G 535 (659)
T ss_pred c
Confidence 4
No 318
>PRK04930 glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional
Probab=50.44 E-value=79 Score=22.76 Aligned_cols=56 Identities=18% Similarity=0.119 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC--------CCCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD--------DDFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~--------~~~~~~d~iii~ 65 (126)
|+|++||...+....... ...+.+.++ ...++++.++++. +|.. +.+...|.||+-
T Consensus 5 ~~kiLiI~aHP~~~~S~~-----n~~l~~~~~-~~~~v~~~DL~~~-~p~~~~d~~~eq~~l~~aD~iV~~ 68 (184)
T PRK04930 5 PPKVLLLYAHPESQDSVA-----NRVLLKPAQ-QLEHVTVHDLYAH-YPDFFIDIPHEQALLREHDVIVFQ 68 (184)
T ss_pred CCEEEEEECCCCcccCHH-----HHHHHHHHH-cCCceEEEECccc-CCCCCCCHHHHHHHHHhCCEEEEE
Confidence 589999999887542211 222333333 3457777777643 2321 134678888874
No 319
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=49.92 E-value=67 Score=20.56 Aligned_cols=83 Identities=7% Similarity=0.027 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
..||.++-++...... ..+...|...+.....+.-..........+..-|.+|+..-.... ....
T Consensus 13 ~~~i~i~g~g~s~~~a--------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~g~~-------~~~~ 77 (139)
T cd05013 13 ARRIYIFGVGSSGLVA--------EYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFSGET-------KETV 77 (139)
T ss_pred CCEEEEEEcCchHHHH--------HHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCCCCC-------HHHH
Confidence 3577777777643322 235566666777666553211100000112333444443221111 2355
Q ss_pred HHHHHHHhcCCcEEEEch
Q 033165 83 ALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~ 100 (126)
+.++.+.+++.++++|+-
T Consensus 78 ~~~~~a~~~g~~iv~iT~ 95 (139)
T cd05013 78 EAAEIAKERGAKVIAITD 95 (139)
T ss_pred HHHHHHHHcCCeEEEEcC
Confidence 566677778899999875
No 320
>PRK10438 C-N hydrolase family amidase; Provisional
Probab=49.62 E-value=24 Score=26.25 Aligned_cols=21 Identities=19% Similarity=-0.016 Sum_probs=15.2
Q ss_pred CCCCeEEEEEcCCCchHHHHh
Q 033165 1 MGGKKFAVLLCAEDSEYVKKK 21 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~ 21 (126)
|+++||+++|......+...|
T Consensus 1 m~~mkia~~Q~~~~~~d~~~N 21 (256)
T PRK10438 1 MSGLKITLLQQPLVWMDGPAN 21 (256)
T ss_pred CCCCEEEEEEecCccCCHHHH
Confidence 889999999998654333333
No 321
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=49.53 E-value=84 Score=22.46 Aligned_cols=58 Identities=10% Similarity=0.034 Sum_probs=31.1
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----CC--CCCcCEEEEcCC
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----DD--FGSYDGYVITGS 67 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~~--~~~~d~iii~G~ 67 (126)
|+|+-....++. |..+..-+.+.+++.|.++.++.....+.... +. -...||+|+.+.
T Consensus 2 i~vi~~~~~~~~----~~~~~~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 2 IGVVTTDLALHG----PSSTLAAIESAAREAGYAVTLSMLAEADEEALRAAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred EEEEeCCCCccc----HHHHHHHHHHHHHHCCCeEEEEeCCCCchHHHHHHHHHHHhcCCCEEEEeCC
Confidence 566665444321 12334445667777888887775432110000 01 147999999765
No 322
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=49.45 E-value=58 Score=28.48 Aligned_cols=106 Identities=20% Similarity=0.222 Sum_probs=61.6
Q ss_pred eEEEEEcCCCch-----------HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCC
Q 033165 5 KFAVLLCAEDSE-----------YVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHG 73 (126)
Q Consensus 5 ki~Il~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~ 73 (126)
|++||.|=..-. .-+.+| ||.+.+ ..| .|..+++.-++-++.-....+++.|.||-.|...+++.
T Consensus 440 kvavLn~WG~~RsW~~~~v~ha~~ykq~y-sy~Gvl-E~L--SG~p~dV~FisFdDi~~~gi~~didViIN~G~a~ta~S 515 (719)
T TIGR02336 440 KVAVLNSWGKMRSWMAFQVAHALPYKQTY-SYYGIL-ECL--SGMPVEVEFISFDDILEHGIDSDIDVIINGGDADTAWS 515 (719)
T ss_pred eEEEEecccccchHhhhhhhhhhhhhhhh-hHHHHH-HHh--cCCCeeEEEecHHHHhhcCCCcCCcEEEecCccccccc
Confidence 999998654421 111122 344433 222 35555544433222211124578999999988776654
Q ss_pred C-chHH-HHHHHHHHHHHhcCCcEEEEchH--HH------HHHHHhCCccc
Q 033165 74 N-DVWI-CKLIALLKQLDSLRKKVLGICFG--HQ------VRAITVFSSHI 114 (126)
Q Consensus 74 ~-~~~~-~~~~~~i~~~~~~~~PvlGIC~G--~Q------~la~~~Gg~v~ 114 (126)
- ..|. +.+.+.|++.++.|--++|++-- +| .|+..+|.+..
T Consensus 516 GG~~W~d~~~~~aLr~fV~~GGglIGVgDpsa~v~~G~~PqLadvLGV~~E 566 (719)
T TIGR02336 516 GGDVWTNPKLVETVRAWVRGGGGFVGVGEPSAAPQNGRFFQLADVIGVDKE 566 (719)
T ss_pred CccccCCHHHHHHHHHHHHcCCeEEEEECCccCCcCCCCcchhhhcceeee
Confidence 3 3464 34667889999988888899832 21 37777887655
No 323
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis]
Probab=49.41 E-value=50 Score=27.78 Aligned_cols=87 Identities=13% Similarity=0.116 Sum_probs=47.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHH-H
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWIC-K 80 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~-~ 80 (126)
..|+.|++.++.-+. ..+.+.|...|++++++.+..-.+ -..+.+.|++.++..-+.... .... .
T Consensus 385 ~frVvVVDSRP~~EG---------~~~lr~Lv~~GinctYv~I~a~sy----im~evtkvfLGahailsNG~vysR~GTa 451 (556)
T KOG1467|consen 385 KFRVVVVDSRPNLEG---------RKLLRRLVDRGINCTYVLINAASY----IMLEVTKVFLGAHAILSNGAVYSRVGTA 451 (556)
T ss_pred ceEEEEEeCCCCcch---------HHHHHHHHHcCCCeEEEEehhHHH----HHHhcceeeechhhhhcCcchhhhcchH
Confidence 468899988887542 234566778899998887643222 123455565554432111111 0011 1
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHH
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQV 104 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~ 104 (126)
...++.. +.++|||-.|=-+-.
T Consensus 452 ~valvAn--a~nVPVlVCCE~yKF 473 (556)
T KOG1467|consen 452 CVALVAN--AFNVPVLVCCEAYKF 473 (556)
T ss_pred HHHHHhc--ccCCCEEEEechhhh
Confidence 2233322 358999999965543
No 324
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=48.70 E-value=1.5e+02 Score=24.31 Aligned_cols=101 Identities=19% Similarity=0.248 Sum_probs=55.5
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCC--CchHHHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHG--NDVWICKLI 82 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~--~~~~~~~~~ 82 (126)
.++|+-.+-+.. ...+|..-+....++.|.++.+++.- + +.|++..... ...|..++.
T Consensus 126 P~vvilpGltg~----S~~~YVr~lv~~a~~~G~r~VVfN~R-G---------------~~g~~LtTpr~f~ag~t~Dl~ 185 (409)
T KOG1838|consen 126 PIVVILPGLTGG----SHESYVRHLVHEAQRKGYRVVVFNHR-G---------------LGGSKLTTPRLFTAGWTEDLR 185 (409)
T ss_pred cEEEEecCCCCC----ChhHHHHHHHHHHHhCCcEEEEECCC-C---------------CCCCccCCCceeecCCHHHHH
Confidence 455665555432 12256666777777888777766631 1 1223222111 123555566
Q ss_pred HHHHHHHhc--CCc--EEEEchHHHHHHHHhCCccccCCcccccccc
Q 033165 83 ALLKQLDSL--RKK--VLGICFGHQVRAITVFSSHINASKIAGTAFC 125 (126)
Q Consensus 83 ~~i~~~~~~--~~P--vlGIC~G~Q~la~~~Gg~v~~~~~~~g~~~~ 125 (126)
+.++.+.++ ..| ..|.-+|.-+|...||-+=..++-+.+-++|
T Consensus 186 ~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~ 232 (409)
T KOG1838|consen 186 EVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVC 232 (409)
T ss_pred HHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEe
Confidence 665555432 344 4566689999999998766555444444444
No 325
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=47.84 E-value=50 Score=26.13 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=25.6
Q ss_pred CcCEEEEcCCCCCCCCCc-hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 58 SYDGYVITGSCNDAHGND-VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~-~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
+.|.||+.|=-.+..... .-+..+.+.++++.+.++|++.|
T Consensus 40 ~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I 81 (390)
T COG0420 40 KVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVI 81 (390)
T ss_pred cCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEe
Confidence 458899888543332222 23344566677776678999887
No 326
>PRK13337 putative lipid kinase; Reviewed
Probab=47.64 E-value=1.2e+02 Score=23.03 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=34.8
Q ss_pred CCeEEEEEcCCCchH-HHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCCC---CCCCCCcCEEEEcCCCCC
Q 033165 3 GKKFAVLLCAEDSEY-VKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFPD---DDDFGSYDGYVITGSCND 70 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p~---~~~~~~~d~iii~G~~~~ 70 (126)
|+|++++.+...-.. ... .+ ..+.+.+++.+.+++++.... ++... ....+.+|.||+.||-.+
T Consensus 1 ~~r~~~I~Np~aG~~~~~~---~~-~~~~~~l~~~~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vvv~GGDGT 69 (304)
T PRK13337 1 MKRARIIYNPTSGRELFKK---NL-PDVLQKLEQAGYETSAHATTGPGDATLAAERAVERKFDLVIAAGGDGT 69 (304)
T ss_pred CceEEEEECCcccchhHHH---HH-HHHHHHHHHcCCEEEEEEecCCCCHHHHHHHHHhcCCCEEEEEcCCCH
Confidence 368888877553211 111 11 224567788898887765431 21110 001246899999999543
No 327
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=47.57 E-value=1e+02 Score=21.99 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=30.3
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
|+++..+...+.. ..+..-+.+.+++.|.++.++....+ +.. +. -.++||+|+.+.
T Consensus 2 Ig~i~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~ 64 (268)
T cd01575 2 VAVLVPSLSNSVF----ADVLQGISDVLEAAGYQLLLGNTGYS--PEREEELLRTLLSRRPAGLILTGL 64 (268)
T ss_pred EEEEeCCCcchhH----HHHHHHHHHHHHHcCCEEEEecCCCC--chhHHHHHHHHHHcCCCEEEEeCC
Confidence 4566554433221 12334455667778888777654321 110 01 147999999875
No 328
>PRK09004 FMN-binding protein MioC; Provisional
Probab=47.44 E-value=89 Score=21.30 Aligned_cols=55 Identities=15% Similarity=0.076 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
|.||.|+.....- ..+ .+...+.+.+.+.|.++++++.. + .+++.++|.+|+.=+
T Consensus 1 M~~i~I~ygS~tG-nae----~~A~~l~~~~~~~g~~~~~~~~~--~---~~~l~~~~~li~~~s 55 (146)
T PRK09004 1 MADITLISGSTLG-GAE----YVADHLAEKLEEAGFSTETLHGP--L---LDDLSASGLWLIVTS 55 (146)
T ss_pred CCeEEEEEEcCch-HHH----HHHHHHHHHHHHcCCceEEeccC--C---HHHhccCCeEEEEEC
Confidence 4478888554442 222 25566777777889888876642 1 235677887777533
No 329
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=47.38 E-value=13 Score=29.12 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=22.2
Q ss_pred CCCcCEEEEc-CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 56 FGSYDGYVIT-GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 56 ~~~~d~iii~-G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
+++.|.|||. |++..+-...- +..-|++++++ .|+.+||-
T Consensus 180 I~~AD~IIlGPgsp~TSI~P~L----lVpgIreAL~~-a~vV~Vsp 220 (297)
T TIGR01819 180 IRKEDNILIGPSNPITSIGPIL----SLPGIREALRD-KKVVAVSP 220 (297)
T ss_pred HHhCCEEEECCCccHHHhhhhc----CchhHHHHHHc-CCEEEEcc
Confidence 5678988885 44433211111 12334555554 89999983
No 330
>PRK00861 putative lipid kinase; Reviewed
Probab=47.37 E-value=90 Score=23.70 Aligned_cols=61 Identities=5% Similarity=0.024 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCCC---CCCCCCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFPD---DDDFGSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p~---~~~~~~~d~iii~G~~ 68 (126)
|+|++|+.+...-. .... -...+...+++ +.+++++.... ++... ....+.+|.||+.||-
T Consensus 2 ~~~~~iI~NP~sG~~~~~~----~~~~i~~~l~~-~~~~~~~~t~~~~~a~~~a~~~~~~~~d~vv~~GGD 67 (300)
T PRK00861 2 TRSACLIFNPVAGQGNPEV----DLALIRAILEP-EMDLDIYLTTPEIGADQLAQEAIERGAELIIASGGD 67 (300)
T ss_pred CceEEEEECCCCCCCchhh----hHHHHHHHHHh-cCceEEEEccCCCCHHHHHHHHHhcCCCEEEEECCh
Confidence 56888887744321 1111 11234556655 35666554321 11000 0012568999999994
No 331
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=47.03 E-value=19 Score=23.99 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=22.1
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
...+.+|+.-|+... ...|+..+ |..+++.++|++||.+.-
T Consensus 69 ~~s~~~IVLig~~T~--~s~wV~~E---I~~A~~~~~~Ii~V~~~~ 109 (130)
T PF08937_consen 69 KNSSVTIVLIGPNTA--KSKWVNWE---IEYALKKGKPIIGVYLPG 109 (130)
T ss_dssp HTEEEEEEE--TT------HHHHHH---HHHHTTT---EEEEETT-
T ss_pred hcCCEEEEEeCCCcc--cCcHHHHH---HHHHHHCCCCEEEEECCC
Confidence 466788888776542 34677665 445667899999998643
No 332
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=46.82 E-value=66 Score=23.24 Aligned_cols=33 Identities=9% Similarity=0.123 Sum_probs=18.2
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+||+|+.+.... ...+.++.+.+.++|+.-+
T Consensus 56 ~~~dgiIi~~~~~~---------~~~~~i~~~~~~~ipvv~~ 88 (271)
T cd06321 56 AKVDLILLNAVDSK---------GIAPAVKRAQAAGIVVVAV 88 (271)
T ss_pred hCCCEEEEeCCChh---------HhHHHHHHHHHCCCeEEEe
Confidence 47999999753211 1122344444557776655
No 333
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=46.78 E-value=68 Score=23.06 Aligned_cols=57 Identities=9% Similarity=0.132 Sum_probs=30.5
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-C-----CCCCcCEEEEcCC
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-D-----DFGSYDGYVITGS 67 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~-----~~~~~d~iii~G~ 67 (126)
|+|+..+..++. |..+...+.+.+++.|.++.+.....+. ... + .-..+||+++.+.
T Consensus 2 igvi~~~~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~i~~l~~~~vdgiii~~~ 64 (264)
T cd06274 2 IGLIIPDLENRS----FARIAKRLEALARERGYQLLIACSDDDP-ETERETVETLIARQVDALIVAGS 64 (264)
T ss_pred EEEEeccccCch----HHHHHHHHHHHHHHCCCEEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEEcCC
Confidence 566665443321 1223344556667788888776543221 100 0 1147999999875
No 334
>PRK04342 DNA topoisomerase VI subunit A; Provisional
Probab=46.51 E-value=85 Score=25.15 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=33.9
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHh-cCCcEEEEc----hHHHHHHHHhCCcc
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDS-LRKKVLGIC----FGHQVRAITVFSSH 113 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~-~~~PvlGIC----~G~Q~la~~~Gg~v 113 (126)
..++.|+|+|...+. ...+.+++.+.+ .++|+++.+ +|..+++..--|..
T Consensus 212 ~~~~~IlItgkG~Pd-------~~TR~fl~~L~~~~~lpv~~l~D~DP~G~~I~~tyk~GS~ 266 (367)
T PRK04342 212 KKYNAILVHLKGQPA-------RATRRFIKRLNEELGLPVYVFTDGDPWGYYIYSVVKYGSI 266 (367)
T ss_pred cccCEEEEECCCCCC-------HHHHHHHHHHHHhcCCCEEEEECCCccHHHHHHHHHhCch
Confidence 356789999876543 123445555443 379999998 99999988665543
No 335
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=45.77 E-value=55 Score=23.72 Aligned_cols=58 Identities=21% Similarity=0.203 Sum_probs=31.2
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCCC-CCC--CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEE
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPDD-DDF--GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~~-~~~--~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
+.+.+++.|.++.++....++.... +.+ .++||||+.+...+ . ..++++.+.++|+..
T Consensus 32 i~~~~~~~g~~~~v~~~~~~~~~~~~~~l~~~~~dgiii~~~~~~----~-------~~~~~~~~~~ipvV~ 92 (275)
T cd06295 32 IADALAERGYDLLLSFVSSPDRDWLARYLASGRADGVILIGQHDQ----D-------PLPERLAETGLPFVV 92 (275)
T ss_pred HHHHHHHcCCEEEEEeCCchhHHHHHHHHHhCCCCEEEEeCCCCC----h-------HHHHHHHhCCCCEEE
Confidence 4566677788887765432210000 111 57999999765321 1 123445556788754
No 336
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=45.57 E-value=73 Score=22.81 Aligned_cols=39 Identities=13% Similarity=0.183 Sum_probs=22.9
Q ss_pred HHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 27 GVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
.-+.+.+++.|.++.++....+ +.. +. -..+||||+.+.
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiIi~~~ 64 (265)
T cd06299 19 TAIQDAASAAGYSTIIGNSDEN--PETENRYLDNLLSQRVDGIIVVPH 64 (265)
T ss_pred HHHHHHHHHcCCEEEEEeCCCC--HHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455666777888777654321 110 01 147899999875
No 337
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=44.96 E-value=92 Score=23.04 Aligned_cols=51 Identities=20% Similarity=0.364 Sum_probs=33.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC--------CCCCcCEEEEc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD--------DFGSYDGYVIT 65 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~--------~~~~~d~iii~ 65 (126)
.||+++......+ .+.+.|++.|.+++.+.+++...+... .-..+|+++++
T Consensus 131 ~~vLi~rg~~~r~-----------~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~~~~~~~d~v~ft 189 (255)
T PRK05752 131 PRVLIMRGEGGRE-----------LLAERLREQGASVDYLELYRRCLPDYPAGTLLQRVEAERLNGLVVS 189 (255)
T ss_pred CEEEEEccCccHH-----------HHHHHHHHCCCEEeEEEEEeecCCCCCHHHHHHHHHhCCCCEEEEC
Confidence 5788887766533 477888899998877766643222111 11468999998
No 338
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=44.89 E-value=1.1e+02 Score=21.93 Aligned_cols=59 Identities=24% Similarity=0.183 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 27 GVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
.-+.+.+++.|..+.++....+ +.. .. -...||+|+.+... . . ..++.+.+.++|++.+
T Consensus 19 ~~i~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiii~~~~~---~-~-------~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 19 QAFQETLAAHGYTLLVASSGYD--LDREYAQARKLLERGVDGLALIGLDH---S-P-------ALLDLLARRGVPYVAT 84 (268)
T ss_pred HHHHHHHHHCCCEEEEecCCCC--HHHHHHHHHHHHhcCCCEEEEeCCCC---C-H-------HHHHHHHhCCCCEEEE
Confidence 3455667778888776543211 110 00 13689999986532 1 1 1123344467887664
No 339
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=43.69 E-value=1.1e+02 Score=21.72 Aligned_cols=61 Identities=13% Similarity=0.031 Sum_probs=31.6
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCC---CCC--CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPD---DDD--FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~---~~~--~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
-+.+..++.|..+.++....+.-.. ... -..+||+|+..... +.. +.++.+.+.++|++.+
T Consensus 20 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~---~~~-------~~~~~~~~~~ipvV~~ 85 (266)
T cd06282 20 GIQEEARAAGYSLLLATTDYDAEREADAVETLLRQRVDGLILTVADA---ATS-------PALDLLDAERVPYVLA 85 (266)
T ss_pred HHHHHHHHCCCEEEEeeCCCCHHHHHHHHHHHHhcCCCEEEEecCCC---Cch-------HHHHHHhhCCCCEEEE
Confidence 3445667778888876543211000 001 14799999965421 111 1234444567887665
No 340
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=43.66 E-value=1e+02 Score=23.03 Aligned_cols=81 Identities=11% Similarity=-0.029 Sum_probs=43.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-C-CCCCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-F-PDDDDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~-p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
.||.|+-.+...... ..+...|...|..+.... +.. . .....+..-|.+|+..-... . ...
T Consensus 129 ~~I~i~G~G~s~~~A--------~~~~~~l~~~g~~~~~~~--d~~~~~~~~~~~~~~Dv~I~iS~sg~----~---~~~ 191 (278)
T PRK11557 129 RRIILTGIGASGLVA--------QNFAWKLMKIGINAVAER--DMHALLATVQALSPDDLLLAISYSGE----R---REL 191 (278)
T ss_pred CeEEEEecChhHHHH--------HHHHHHHhhCCCeEEEcC--ChHHHHHHHHhCCCCCEEEEEcCCCC----C---HHH
Confidence 577777776543322 124555566676654321 110 0 01113455665555422111 1 345
Q ss_pred HHHHHHHHhcCCcEEEEchH
Q 033165 82 IALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G 101 (126)
.+.++.+.+.+.|++.|+-.
T Consensus 192 ~~~~~~ak~~ga~iI~IT~~ 211 (278)
T PRK11557 192 NLAADEALRVGAKVLAITGF 211 (278)
T ss_pred HHHHHHHHHcCCCEEEEcCC
Confidence 56677777889999999864
No 341
>cd00223 TOPRIM_TopoIIB_SPO TOPRIM_TopoIIB_SPO: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in the type IIB family of DNA topoisomerases and Spo11. This subgroup contains proteins similar to Sulfolobus shibatae topoisomerase VI (TopoVI) and Saccharomyces cerevisiae meiotic recombination factor: Spo11. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. TopoVI enzymes are heterotetramers found in archaea and plants. Spo11 plays a role in generating the double strand breaks that initiate homologous recombination during meiosis. S. shibatae TopoVI relaxes both positive and negative supercoils, and in addition has a strong decatenase activity. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspart
Probab=43.66 E-value=1.1e+02 Score=21.17 Aligned_cols=48 Identities=17% Similarity=0.177 Sum_probs=31.1
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhc-CCcEEEEc----hHHHHHHHHhCCc
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSL-RKKVLGIC----FGHQVRAITVFSS 112 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~-~~PvlGIC----~G~Q~la~~~Gg~ 112 (126)
..+.++|+|..... ...+.+++.+.+. +.|+++.+ .|.+++...-.|.
T Consensus 23 ~~~~ilit~kG~P~-------~~tr~~l~~L~~~~~~~~~~l~D~DP~Gi~I~~~y~~gs 75 (160)
T cd00223 23 RNNCILITGKGYPD-------RATRRFLRRLHEELDLPVYILVDGDPYGISILLTYKYGS 75 (160)
T ss_pred cCCEEEEEcCCcCC-------HHHHHHHHHHHHhhCCCEEEEECCCcchhhhhHHHHhCc
Confidence 34678888775432 1233444444332 89999998 8999998876653
No 342
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=43.63 E-value=68 Score=18.90 Aligned_cols=64 Identities=20% Similarity=0.062 Sum_probs=32.9
Q ss_pred HHHHHHhhC-CCeEEEEEccCCCCCC-CCCCCCcCEEEEc-CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 28 VFVRMLAEE-GETWDVFHVARGEFPD-DDDFGSYDGYVIT-GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 28 ~~~~~l~~~-g~~~~~~~~~~~~~p~-~~~~~~~d~iii~-G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
.+...|.+. +.++..+......... ....++=|.+++. -++.+ .+..+.++.+.+.+.|+++|+
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sg~t--------~~~~~~~~~a~~~g~~ii~it 81 (87)
T cd04795 15 YFALELLELTGIEVVALIATELEHASLLSLLRKGDVVIALSYSGRT--------EELLAALEIAKELGIPVIAIT 81 (87)
T ss_pred HHHHHHhcccCCceEEeCCcHHHHHHHHhcCCCCCEEEEEECCCCC--------HHHHHHHHHHHHcCCeEEEEe
Confidence 355556566 7666654422111000 1123444544443 23221 234556677777899999998
No 343
>PRK14568 vanB D-alanine--D-lactate ligase; Provisional
Probab=43.63 E-value=83 Score=24.48 Aligned_cols=45 Identities=16% Similarity=-0.012 Sum_probs=29.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR 47 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 47 (126)
|+++||+||--+...+.-.+-. | ...+.+.|.+.+.++..+.+..
T Consensus 1 m~~~~i~vl~GG~S~E~evSl~-s-~~~v~~~l~~~~~~v~~i~i~~ 45 (343)
T PRK14568 1 MNRIKVGILFGGCSEEHPVSVK-S-AIEVARNLDTEKYEPFYIGITK 45 (343)
T ss_pred CCCcEEEEEECCCCCchHHHHH-h-HHHHHHhhcccCCeEEEEEECC
Confidence 7789999999888876322221 1 2345677777788777665543
No 344
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=43.60 E-value=93 Score=20.45 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
|+||+++-...-+... ....+..+.+..|.++++--+...++. +.++++|.+++.
T Consensus 1 Mk~IlLvC~aGmSTSl------LV~Km~~aA~~kg~~~~I~A~s~~e~~--~~~~~~DvvLlG 55 (102)
T COG1440 1 MKKILLVCAAGMSTSL------LVTKMKKAAESKGKDVTIEAYSETELS--EYIDNADVVLLG 55 (102)
T ss_pred CceEEEEecCCCcHHH------HHHHHHHHHHhCCCceEEEEechhHHH--HhhhcCCEEEEC
Confidence 5678777665554321 122345566667888887766544432 356789988874
No 345
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=43.53 E-value=84 Score=25.41 Aligned_cols=58 Identities=16% Similarity=0.134 Sum_probs=34.4
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEE---EEchHHHHH-HHHhCCccc
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVL---GICFGHQVR-AITVFSSHI 114 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pvl---GIC~G~Q~l-a~~~Gg~v~ 114 (126)
...|+|+++|......+..+........+.+.+..++||+ ||-.|..++ +.++|++..
T Consensus 265 ~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V 326 (381)
T PRK11197 265 FGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTV 326 (381)
T ss_pred CCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCce
Confidence 4689999997655444433221222222333444568988 566787776 667887643
No 346
>PF08901 DUF1847: Protein of unknown function (DUF1847); InterPro: IPR014997 This group of proteins are functionally uncharacterised. They contain 4 N-terminal cysteines that may form a zinc-binding domain.
Probab=42.88 E-value=1.2e+02 Score=21.52 Aligned_cols=95 Identities=20% Similarity=0.294 Sum_probs=48.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-CCCCCcCEEEEcCCCCCCCCCchHHH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-DDFGSYDGYVITGSCNDAHGNDVWIC 79 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~~~~~~d~iii~G~~~~~~~~~~~~~ 79 (126)
|.-+||+|.-|-.-...+ ..+.+.|+..|+++.-+---.+..+.. -.+.+-+.+ -+|.. .+. -.|-.+
T Consensus 53 mgykkiGiAfCiGL~~EA--------~~~~~iL~~~gFev~sV~CKvg~i~K~~igi~~~~k~-~~~~~-e~m-CNPi~Q 121 (157)
T PF08901_consen 53 MGYKKIGIAFCIGLRKEA--------RILAKILEANGFEVYSVCCKVGGIDKEEIGIPEEDKI-KPGTF-EAM-CNPILQ 121 (157)
T ss_pred cCCCeeeehhhHhHHHHH--------HHHHHHHHHCCCEEEEEEecCCCccHHHcCCchhhcc-CCCCC-CcC-cCHHHH
Confidence 455788888776654432 357888888998876553322322211 012222222 23321 111 112111
Q ss_pred HHHHHHHHHHhcCC-cEEEEchHHHHHHHHh
Q 033165 80 KLIALLKQLDSLRK-KVLGICFGHQVRAITV 109 (126)
Q Consensus 80 ~~~~~i~~~~~~~~-PvlGIC~G~Q~la~~~ 109 (126)
.+++++. +.+. =++|.|.||=.|..-+
T Consensus 122 --A~~LN~~-~TdlNI~lGLCVGHDsLF~Ky 149 (157)
T PF08901_consen 122 --AKLLNEA-GTDLNIILGLCVGHDSLFIKY 149 (157)
T ss_pred --HHHHhhc-CCceeEEeeehhchHHHHHHh
Confidence 1233332 1232 4899999999997644
No 347
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=42.56 E-value=20 Score=28.12 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=22.1
Q ss_pred CCCcCEEEEc-CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 56 FGSYDGYVIT-GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 56 ~~~~d~iii~-G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
+.+.|.|||. |++..+-...--++.+.+.|+ +.+-|+.+||-
T Consensus 181 I~~AD~IVlGPgsp~TSI~P~LlVpgI~eAL~---~s~A~vV~Vsp 223 (303)
T cd07186 181 IEDADLVIIGPSNPVTSIGPILALPGIREALR---DKKAPVVAVSP 223 (303)
T ss_pred HHhCCEEEECCCccHHHhhhhccchhHHHHHH---hCCCCEEEEcC
Confidence 4678988885 444332221112233333333 24679999983
No 348
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=42.56 E-value=90 Score=25.23 Aligned_cols=58 Identities=16% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEE---EEchHHHHH-HHHhCCccc
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVL---GICFGHQVR-AITVFSSHI 114 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pvl---GIC~G~Q~l-a~~~Gg~v~ 114 (126)
...|+|+++|......+..+..-....-+++.+..++|++ ||-.|..++ +.++|++..
T Consensus 273 ~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v 334 (383)
T cd03332 273 AGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAV 334 (383)
T ss_pred CCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEE
Confidence 4799999996654443333211222222333344468887 566888877 568888654
No 349
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=42.52 E-value=1e+02 Score=22.12 Aligned_cols=61 Identities=16% Similarity=0.134 Sum_probs=31.5
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCC----C--CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDD----D--DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~----~--~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
-+...+++.|.++.++....+ .... . .-...||+|+.+...+. ..+.++.+.+.++|++.+
T Consensus 21 g~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiii~~~~~~~---------~~~~l~~~~~~~iPvV~~ 87 (275)
T cd06317 21 AFQAAAEEDGVEVIVLDANGD-VARQAAQVEDLIAQKVDGIILWPTDGQA---------YIPGLRKAKQAGIPVVIT 87 (275)
T ss_pred HHHHHHHhcCCEEEEEcCCcC-HHHHHHHHHHHHHcCCCEEEEecCCccc---------cHHHHHHHHHCCCcEEEe
Confidence 344556677888777643211 0000 0 01479999997642111 112344455567887654
No 350
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=42.38 E-value=1.5e+02 Score=22.62 Aligned_cols=82 Identities=16% Similarity=0.137 Sum_probs=43.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEE-cCCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI-TGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii-~G~~~~~~~~~~~~~~~~ 82 (126)
.||.+.-++......+ .+...|...|..+..+............+..-|.+|+ +-++.+ ..+.
T Consensus 48 ~~I~i~G~G~S~~~a~--------~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~~I~iS~sG~t--------~~~~ 111 (326)
T PRK10892 48 GKVVVMGMGKSGHIGR--------KMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGES--------SEIL 111 (326)
T ss_pred CeEEEEeCcHhHHHHH--------HHHHHHhcCCceeEEeChHHhhccccccCCCCCEEEEEeCCCCC--------HHHH
Confidence 4777776665433221 2445556677776654322110001112344454444 333211 3466
Q ss_pred HHHHHHHhcCCcEEEEchH
Q 033165 83 ALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G 101 (126)
+.++.+.+.+.|+++|+-.
T Consensus 112 ~~~~~ak~~g~~vi~iT~~ 130 (326)
T PRK10892 112 ALIPVLKRLHVPLICITGR 130 (326)
T ss_pred HHHHHHHHCCCcEEEEECC
Confidence 7778887889999999853
No 351
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.22 E-value=1e+02 Score=21.23 Aligned_cols=77 Identities=21% Similarity=0.141 Sum_probs=45.1
Q ss_pred CCHHHHHHHHHhhC-CCeEEEEEccCCCCCC------CC--CCCCcCEEEEcCCCCCCCCC---chHHHHHHHHHHHHHh
Q 033165 23 GGYFGVFVRMLAEE-GETWDVFHVARGEFPD------DD--DFGSYDGYVITGSCNDAHGN---DVWICKLIALLKQLDS 90 (126)
Q Consensus 23 ~~~~~~~~~~l~~~-g~~~~~~~~~~~~~p~------~~--~~~~~d~iii~G~~~~~~~~---~~~~~~~~~~i~~~~~ 90 (126)
.+|..++.+.|.+. ...+++++........ .+ ....+|.|+|..|..+.... ..+.+.+.++++.+.+
T Consensus 23 ~~~~~~l~~~l~~~~~~~~~~~n~g~~G~t~~~~~~~l~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~ 102 (191)
T cd01836 23 QALAGQLARGLAAITGRGVRWRLFAKTGATSADLLRQLAPLPETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRA 102 (191)
T ss_pred ccHHHHHHHHHHHhhCCceEEEEEecCCcCHHHHHHHHHhcccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHh
Confidence 35888888888643 2245555543211010 01 12578999998776655322 2455667777777765
Q ss_pred --cCCcEEEEc
Q 033165 91 --LRKKVLGIC 99 (126)
Q Consensus 91 --~~~PvlGIC 99 (126)
.+.+++-++
T Consensus 103 ~~~~~~iiv~~ 113 (191)
T cd01836 103 KFPGARVVVTA 113 (191)
T ss_pred hCCCCEEEEEC
Confidence 567887665
No 352
>PF09198 T4-Gluco-transf: Bacteriophage T4 beta-glucosyltransferase; InterPro: IPR015281 Members of this family are DNA-modifying enzymes encoded by bacteriophage T4 that transfer glucose from uridine diphosphoglucose to 5-hydroxymethyl cytosine bases of phage T4 DNA []. ; PDB: 1J39_A 1SXQ_B 1NZF_A 1M5R_B 1JEJ_A 1JIV_A 1NZD_A 1NVK_A 2BGU_A 1JIU_A ....
Probab=42.13 E-value=22 Score=18.63 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=16.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeE
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETW 40 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 40 (126)
|||+|+..+.....+.....+-+-.+...+.+.|.++
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~v 37 (38)
T PF09198_consen 1 MKIAIINMGNNIQNFKTTPSSETIYLFKCISDMGLNV 37 (38)
T ss_dssp -EEEEEESSS--SSSSSHHHHHHHHHHHHHHTTT-EE
T ss_pred CeEEEEecCCceeceeecCccceEeHHHHHHHhCCCC
Confidence 5899998776532111111111223445566666554
No 353
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.86 E-value=1.2e+02 Score=21.89 Aligned_cols=56 Identities=16% Similarity=0.247 Sum_probs=29.9
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCC--CCcCEEEEcCC
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDF--GSYDGYVITGS 67 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~--~~~d~iii~G~ 67 (126)
|+|+..+..++.. ..+..-+.+.+++.|.++.++....+ +.. +.+ ...||+|+.++
T Consensus 2 Igvv~~~~~~~~~----~~~~~~i~~~a~~~g~~~~~~~~~~~--~~~~~~~i~~l~~~~vdgii~~~~ 64 (269)
T cd06281 2 IGCLVSDITNPLL----AQLFSGAEDRLRAAGYSLLIANSLND--PERELEILRSFEQRRMDGIIIAPG 64 (269)
T ss_pred EEEEecCCccccH----HHHHHHHHHHHHHcCCEEEEEeCCCC--hHHHHHHHHHHHHcCCCEEEEecC
Confidence 5666654443321 12333455667777888776643221 110 011 47999999865
No 354
>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6.3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....
Probab=41.82 E-value=10 Score=26.75 Aligned_cols=48 Identities=21% Similarity=0.338 Sum_probs=27.0
Q ss_pred CcCEEEEcCCCCCCCCC-----chHHHHHHHHHHHHHhcCCcEEEEchHHHHHH
Q 033165 58 SYDGYVITGSCNDAHGN-----DVWICKLIALLKQLDSLRKKVLGICFGHQVRA 106 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~-----~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la 106 (126)
..|.+|+||-..+.... ..|.++..+.++. .....+.+|+|+-.|++.
T Consensus 117 ~idlvlVP~lafd~~G~RLG~GgGyYDR~L~~~~~-~~~~~~~igl~~~~q~~~ 169 (186)
T PF01812_consen 117 EIDLVLVPGLAFDRNGNRLGYGGGYYDRFLARLPP-GRKKPLKIGLAFDFQIVD 169 (186)
T ss_dssp G-SEEEEE-SEEETTSBEE-SSSTHHHHHHHHHTS--SS--EEEEEE-GGGEES
T ss_pred cCCEEEeCcEEECCCCCeEecCCCHHHhHHHhhhc-ccCCCeEEEEeehhheeC
Confidence 78999999976543221 1466665444433 123578999999999765
No 355
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=41.54 E-value=44 Score=25.11 Aligned_cols=42 Identities=17% Similarity=0.050 Sum_probs=24.4
Q ss_pred CHHHHHHHHHhhCCCeEEEEEccCCCCCCC--C---C--CCCcCEEEEcCC
Q 033165 24 GYFGVFVRMLAEEGETWDVFHVARGEFPDD--D---D--FGSYDGYVITGS 67 (126)
Q Consensus 24 ~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~--~---~--~~~~d~iii~G~ 67 (126)
....-+.+.+++.|.++.+.....+ +.. + . -...||||+.+.
T Consensus 15 ~~~~~i~~~a~~~g~~v~~~~~~~~--~~~q~~~i~~l~~~~vDgIIi~~~ 63 (302)
T TIGR02634 15 KDRDIFVAAAESLGAKVFVQSANGN--EAKQISQIENLIARGVDVLVIIPQ 63 (302)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCCC--HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3444566777778888776654321 110 0 0 146899999754
No 356
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=41.22 E-value=1.4e+02 Score=22.89 Aligned_cols=65 Identities=11% Similarity=0.044 Sum_probs=34.5
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcE
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKV 95 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pv 95 (126)
+...++..|.++..+.....+ +..+.+ .+.+.++++ .|.++....--.+++.++++.+.+.+..+
T Consensus 92 y~~~~~~~G~~v~~vp~~~~~-~~~~~l~~~~~k~v~l~-nP~NPTG~~~s~~~~~~l~~~a~~~~~~i 158 (332)
T PRK06425 92 YKGYAFTHGIRISALPFNLIN-NNPEILNNYNFDLIFIV-SPDNPLGNLISRDSLLTISEICRKKGALL 158 (332)
T ss_pred HHHHHHHcCCeEEEEeCCccc-CcHHHHhhcCCCEEEEe-CCCCCcCCccCHHHHHHHHHHHHHcCCEE
Confidence 344566778888777653211 111112 256788888 88888664311233445555444444444
No 357
>PRK15482 transcriptional regulator MurR; Provisional
Probab=41.16 E-value=1.5e+02 Score=22.22 Aligned_cols=82 Identities=6% Similarity=-0.111 Sum_probs=42.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
.||.|+-.+...... ..+...|...|..+....-..........+..-|.+|+-.-+... ....+
T Consensus 136 ~~I~i~G~G~S~~~A--------~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dv~i~iS~sg~t-------~~~~~ 200 (285)
T PRK15482 136 PFIQITGLGGSALVG--------RDLSFKLMKIGYRVACEADTHVQATVSQALKKGDVQIAISYSGSK-------KEIVL 200 (285)
T ss_pred CeeEEEEeChhHHHH--------HHHHHHHHhCCCeeEEeccHhHHHHHHhcCCCCCEEEEEeCCCCC-------HHHHH
Confidence 577777776543222 224455556677665532110000001123444655554322111 33556
Q ss_pred HHHHHHhcCCcEEEEch
Q 033165 84 LLKQLDSLRKKVLGICF 100 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~ 100 (126)
.++.+.+.+.|+++|+-
T Consensus 201 ~~~~a~~~g~~iI~IT~ 217 (285)
T PRK15482 201 CAEAARKQGATVIAITS 217 (285)
T ss_pred HHHHHHHCCCEEEEEeC
Confidence 67777778999999995
No 358
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=41.13 E-value=87 Score=22.56 Aligned_cols=58 Identities=7% Similarity=0.087 Sum_probs=30.5
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC---C--CCCCcCEEEEcCC
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD---D--DFGSYDGYVITGS 67 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~---~--~~~~~d~iii~G~ 67 (126)
|+|+..+..++. |..+..-+.+.+++.|.++.++....+.-... + .-..+||+|+.+.
T Consensus 2 Ig~i~~~~~~~~----~~~~~~gi~~~~~~~gy~v~~~~~~~~~~~~~~~i~~~~~~~~dgiii~~~ 64 (269)
T cd06293 2 IGLVVPDIANPF----FAELADAVEEEADARGLSLVLCATRNRPERELTYLRWLDTNHVDGLIFVTN 64 (269)
T ss_pred EEEEeCCCCCCc----HHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 566665433321 11233345567777888887775432110000 0 1147999999864
No 359
>PRK09701 D-allose transporter subunit; Provisional
Probab=40.79 E-value=1.6e+02 Score=22.21 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=32.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc-cCCCCCC----CCC--CCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV-ARGEFPD----DDD--FGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~p~----~~~--~~~~d~iii~G~ 67 (126)
.+|+++-.+..++... ....-+.+.+++.|.++.++.. ..++... .+. -..+||+|+.+.
T Consensus 25 ~~Igvi~~~~~~~f~~----~~~~gi~~~a~~~g~~v~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 91 (311)
T PRK09701 25 AEYAVVLKTLSNPFWV----DMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 91 (311)
T ss_pred CeEEEEeCCCCCHHHH----HHHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4788887665543221 1223344566677888776632 1111100 001 146999999865
No 360
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=40.68 E-value=57 Score=23.21 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=26.8
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 65 TGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 65 ~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
.|-|.+..|..||+..+.+.+....+.+.-++=+|-.
T Consensus 40 ~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSA 76 (161)
T COG3265 40 AGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSA 76 (161)
T ss_pred CCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHH
Confidence 4556655555699999999988877666657777864
No 361
>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=39.39 E-value=91 Score=22.76 Aligned_cols=37 Identities=8% Similarity=-0.137 Sum_probs=21.5
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCCC-C-----CCCCcCEEEEcC
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPDD-D-----DFGSYDGYVITG 66 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~~-~-----~~~~~d~iii~G 66 (126)
+.+.+++.|.++.++....+. ... + .-.+.||||+.+
T Consensus 21 i~~~~~~~G~~~~~~~~~~d~-~~~~~~i~~~~~~~vdgiii~~ 63 (272)
T cd06313 21 ADEAGKLLGVDVTWYGGALDA-VKQVAAIENMASQGWDFIAVDP 63 (272)
T ss_pred HHHHHHHcCCEEEEecCCCCH-HHHHHHHHHHHHcCCCEEEEcC
Confidence 445666788888877653210 000 0 115689999964
No 362
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=39.35 E-value=62 Score=20.99 Aligned_cols=51 Identities=12% Similarity=0.106 Sum_probs=28.1
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
||+|++.+... + ..+.-.|+-.|.+++.+...+.. ....-...++++|.-|
T Consensus 1 kILvIddd~~R---~-------~~L~~ILeFlGe~~~~~~~~~~~--~~~~~~~~~~~~v~~g 51 (109)
T PF06490_consen 1 KILVIDDDAER---R-------QRLSTILEFLGEQCEAVSSSDWS--QADWSSPWEACAVILG 51 (109)
T ss_pred CEEEECCcHHH---H-------HhhhhhhhhcCCCeEEecHHHHH--HhhhhcCCcEEEEEec
Confidence 68888655432 1 23556667778888877643221 1111245666666544
No 363
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=39.30 E-value=14 Score=26.63 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=37.0
Q ss_pred HHHHHHHHhhCCCeEEEEEcc--CCCCCCC----CCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcE
Q 033165 26 FGVFVRMLAEEGETWDVFHVA--RGEFPDD----DDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKV 95 (126)
Q Consensus 26 ~~~~~~~l~~~g~~~~~~~~~--~~~~p~~----~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pv 95 (126)
.+++...+.+.+.+++..... ...+|.. +.+.+||.||+..-+.+..-.........+.|++.++.+.=+
T Consensus 29 v~~l~~~l~~~~~~~~~~p~~~~~~~fP~~~lf~~~L~~yD~vIl~dv~~~~ll~~~~~~~~~~~l~~yV~~GGgL 104 (177)
T PF07090_consen 29 VDLLHFALLRPGIEVDYIPAHEALIAFPTTLLFDEELNRYDVVILSDVPANSLLKSRRSPNQLELLADYVRDGGGL 104 (177)
T ss_dssp SHHHHHHHHHTT-EEEEEEHHHHHHH--SSC--SHHHCT-SEEEEES--HHHHHT----HHHHHHHHHHHHTT-EE
T ss_pred hHHHHHHHhcCCccccccccchhhhhCCCchhhhhHHhcCCEEEEeCCCchhcccccCCHHHHHHHHHHHHhCCEE
Confidence 556777888889888877654 1234542 357899999998654332100000234556677777665433
No 364
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=39.05 E-value=79 Score=25.14 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=33.2
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEE---EEchHHHHH-HHHhCCcccc
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVL---GICFGHQVR-AITVFSSHIN 115 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pvl---GIC~G~Q~l-a~~~Gg~v~~ 115 (126)
...|+|+++|-.....|..+.......-+++.+..+.||+ ||..|.-++ +.+||++...
T Consensus 245 ~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~ 307 (356)
T PF01070_consen 245 AGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVG 307 (356)
T ss_dssp TT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEE
T ss_pred cCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEE
Confidence 4799999995433333322212222233444455578988 688999777 7899998654
No 365
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=39.00 E-value=27 Score=22.94 Aligned_cols=50 Identities=16% Similarity=0.030 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
+||+|+..+. ..-.+.+.+++.|+++-.++...+... ......|.++..+
T Consensus 3 kkvLIanrGe-----------ia~r~~ra~r~~Gi~tv~v~s~~d~~s--~~~~~ad~~~~~~ 52 (110)
T PF00289_consen 3 KKVLIANRGE-----------IAVRIIRALRELGIETVAVNSNPDTVS--THVDMADEAYFEP 52 (110)
T ss_dssp SEEEESS-HH-----------HHHHHHHHHHHTTSEEEEEEEGGGTTG--HHHHHSSEEEEEE
T ss_pred CEEEEECCCH-----------HHHHHHHHHHHhCCcceeccCchhccc--ccccccccceecC
Confidence 4788874433 334567888999998877764432211 1234566666654
No 366
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=38.92 E-value=1.4e+02 Score=23.73 Aligned_cols=61 Identities=8% Similarity=0.089 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh--hCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA--EEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~--~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~ 68 (126)
++|++|+.....- +++. -...+.+-++ ..|.+++++++.+.+... ..++.++|+|++.-..
T Consensus 247 ~~kv~IvY~S~~G-nTe~----mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~GspT 310 (394)
T PRK11921 247 ENQVTILYDTMWN-STRR----MAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGSST 310 (394)
T ss_pred cCcEEEEEECCch-HHHH----HHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEECCC
Confidence 4678888765542 1111 1122334444 456788888765321100 0123468998876443
No 367
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=38.89 E-value=1.5e+02 Score=21.38 Aligned_cols=58 Identities=12% Similarity=0.088 Sum_probs=30.2
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-C-----CCCCcCEEEEcCCC
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-D-----DFGSYDGYVITGSC 68 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~-----~~~~~d~iii~G~~ 68 (126)
|+|+..+..++. |.++..-+.+.+++.|.++.+.....+ .... + .-..+||+|+.++.
T Consensus 2 igvv~~~~~~~~----~~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~l~~~~vdgii~~~~~ 65 (273)
T cd01541 2 IGVITTYISDYI----FPSIIRGIESVLSEKGYSLLLASTNND-PERERKCLENMLSQGIDGLIIEPTK 65 (273)
T ss_pred eEEEeCCccchh----HHHHHHHHHHHHHHcCCEEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEeccc
Confidence 455554433321 123344455667777888876653211 1100 0 01479999997653
No 368
>PRK10264 hydrogenase 1 maturation protease; Provisional
Probab=38.73 E-value=43 Score=24.36 Aligned_cols=60 Identities=12% Similarity=-0.026 Sum_probs=34.5
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC---CCeEEEEEccCCCCCCCCCCCCcCEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE---GETWDVFHVARGEFPDDDDFGSYDGYVI 64 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~~~~~~p~~~~~~~~d~iii 64 (126)
|.++|++|+-++..-- .| +.+.-.+.+.|++. ..+++++..........+.+.++|.+|+
T Consensus 1 ~~~~rilVlGiGN~L~--gD--DGvG~~va~~L~~~~~~~~~V~vid~Gt~g~~ll~~i~~~d~vIi 63 (195)
T PRK10264 1 MSEQRVVVMGLGNLLW--AD--EGFGVRVAERLYAHYHWPEYVEIVDGGTQGLNLLGYVESASHLLI 63 (195)
T ss_pred CCCCCEEEEEeCcccc--cc--CcHHHHHHHHHHhhcCCCCCeEEEECCCCHHHHHHHHcCCCEEEE
Confidence 7889999998887631 11 23555566777543 2346666543211101123567888877
No 369
>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]
Probab=38.62 E-value=25 Score=25.31 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=32.1
Q ss_pred CCcCEEEEcCCCCCCCCCc-----hHHHHHHHHHHHHHhcCCcEEEEchHHHHHHH
Q 033165 57 GSYDGYVITGSCNDAHGND-----VWICKLIALLKQLDSLRKKVLGICFGHQVRAI 107 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~-----~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~ 107 (126)
...|.|++||-..+....- .+.++..+..+ ....+++|+|+=.|++.+
T Consensus 116 ~~iDlvlvP~Vafd~~G~RLG~GgGyYDR~la~~~---~~~~~~ig~~~~~Q~v~~ 168 (191)
T COG0212 116 PEIDLVLVPLVAFDKQGYRLGYGGGYYDRYLANLR---GRKTPTVGIAYDCQLVDH 168 (191)
T ss_pred CcCCEEEeCceeECCCCccccCCCchHHHHHHhhc---cCCCCEEEEEEeeeeecc
Confidence 4568999998765432211 35555444333 457999999999998875
No 370
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=38.58 E-value=1.5e+02 Score=22.05 Aligned_cols=58 Identities=12% Similarity=-0.056 Sum_probs=34.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
|||+++.+........ .+...+.+.|.+.|.+++++......+.......++|.|.+.
T Consensus 1 MkIl~~~~~~~~gG~~----~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~~~~diih~~ 58 (365)
T cd03825 1 MKVLHLNTSDISGGAA----RAAYRLHRALQAAGVDSTMLVQEKKALISKIEIINADIVHLH 58 (365)
T ss_pred CeEEEEecCCCCCcHH----HHHHHHHHHHHhcCCceeEEEeecchhhhChhcccCCEEEEE
Confidence 5899997654322111 245567788888999998887543222111123567877764
No 371
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=38.38 E-value=29 Score=25.13 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=13.8
Q ss_pred CCcEEEEchHHHHHHHHh
Q 033165 92 RKKVLGICFGHQVRAITV 109 (126)
Q Consensus 92 ~~PvlGIC~G~Q~la~~~ 109 (126)
+.+++|+|.|.|-+.+.+
T Consensus 160 ~~k~vGlCh~~~~~~~~l 177 (183)
T PF02056_consen 160 KIKVVGLCHGPQGTRRQL 177 (183)
T ss_dssp TSEEEEE-SHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHH
Confidence 489999999999876644
No 372
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=38.18 E-value=1.5e+02 Score=21.12 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=23.9
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCCCC-----C--CCCCcCEEEEcCC
Q 033165 25 YFGVFVRMLAEEGETWDVFHVARGEFPDD-----D--DFGSYDGYVITGS 67 (126)
Q Consensus 25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~--~~~~~d~iii~G~ 67 (126)
+..-+.+.+++.|.++.+.....+ +.. + .-..+|++|+.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~i~~l~~~~~dgii~~~~ 64 (259)
T cd01542 17 TVKGILAALYENGYQMLLMNTNFS--IEKEIEALELLARQKVDGIILLAT 64 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC--HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 334455666777888876653221 110 0 1257999999865
No 373
>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional
Probab=37.75 E-value=25 Score=25.02 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=29.7
Q ss_pred CCCcCEEEEcCCCCCCCCCc-----hHHHHHHHHHHHHHhcCCcEEEEchHHHHHHH
Q 033165 56 FGSYDGYVITGSCNDAHGND-----VWICKLIALLKQLDSLRKKVLGICFGHQVRAI 107 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~-----~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~ 107 (126)
..+.|.+|+||-..+....- .|..+..+ .....+.+.+|+|+-.|++..
T Consensus 107 ~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~---~~~~~~~~~igla~~~Q~~~~ 160 (182)
T PRK10333 107 LSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQ---NWQHYKTQPVGYAHDCQLVEK 160 (182)
T ss_pred cccCCEEEeCceEECCCCCcccCCcchHHHHHH---HhcccCCcEEEEeeeeEEeCC
Confidence 34579999998765442211 35555433 221123458999999998743
No 374
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=37.74 E-value=1.9e+02 Score=23.28 Aligned_cols=32 Identities=19% Similarity=-0.035 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
|+||+|+..+.. .-.+.+.+++.|.++..+..
T Consensus 2 ~k~iLi~g~g~~-----------a~~i~~aa~~~G~~vv~~~~ 33 (451)
T PRK08591 2 FDKILIANRGEI-----------ALRIIRACKELGIKTVAVHS 33 (451)
T ss_pred cceEEEECCCHH-----------HHHHHHHHHHcCCeEEEEcC
Confidence 689999955332 33567788888988766643
No 375
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=37.67 E-value=63 Score=23.11 Aligned_cols=40 Identities=28% Similarity=0.280 Sum_probs=22.3
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCC--CCCC---CCCcCEEEEcCC
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFP--DDDD---FGSYDGYVITGS 67 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p--~~~~---~~~~d~iii~G~ 67 (126)
-+.+.+++.|.++.++....+.-. .... -..+||+|+.+.
T Consensus 24 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~ 68 (268)
T cd06271 24 GLSEALAEHGYDLVLLPVDPDEDPLEVYRRLVESGLVDGVIISRT 68 (268)
T ss_pred HHHHHHHHCCceEEEecCCCcHHHHHHHHHHHHcCCCCEEEEecC
Confidence 345566777888877654321000 0001 146999999765
No 376
>CHL00067 rps2 ribosomal protein S2
Probab=37.61 E-value=48 Score=24.73 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=22.6
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
.+|.||+..... + ...++++...++|+.|+|
T Consensus 161 ~P~~iiv~d~~~----~-------~~ai~Ea~~l~IPvIaiv 191 (230)
T CHL00067 161 LPDIVIIIDQQE----E-------YTALRECRKLGIPTISIL 191 (230)
T ss_pred CCCEEEEeCCcc----c-------HHHHHHHHHcCCCEEEEE
Confidence 478888886532 1 235777878899999998
No 377
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=37.40 E-value=1.5e+02 Score=21.12 Aligned_cols=42 Identities=14% Similarity=0.081 Sum_probs=24.2
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCC-C----CC--CCCCcCEEEEcCC
Q 033165 25 YFGVFVRMLAEEGETWDVFHVARGEFP-D----DD--DFGSYDGYVITGS 67 (126)
Q Consensus 25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p-~----~~--~~~~~d~iii~G~ 67 (126)
+..-+.+.+++.|.++.++....+. + . .+ .-..+||+|+.+.
T Consensus 17 ~~~gi~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiii~~~ 65 (270)
T cd01545 17 IQLGALDACRDTGYQLVIEPCDSGS-PDLAERVRALLQRSRVDGVILTPP 65 (270)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCCc-hHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3344556677788888777544221 1 0 00 1246899999755
No 378
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=37.34 E-value=1.5e+02 Score=21.15 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=22.7
Q ss_pred HHHHHHHhhCCCeEEEEEccCCCCCCCC---C--CCCcCEEEEcCC
Q 033165 27 GVFVRMLAEEGETWDVFHVARGEFPDDD---D--FGSYDGYVITGS 67 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~~~~p~~~---~--~~~~d~iii~G~ 67 (126)
.-+.+.+++.|.++.++....+.-...+ . -..+||+|+...
T Consensus 19 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~~dgiii~~~ 64 (270)
T cd06296 19 RGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSARRTDGVILVTP 64 (270)
T ss_pred HHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHcCCCEEEEecC
Confidence 3455666777888877654322100000 0 146999999754
No 379
>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.
Probab=37.22 E-value=1.1e+02 Score=21.89 Aligned_cols=60 Identities=13% Similarity=0.124 Sum_probs=30.7
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCC-----C--CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDD-----D--DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~-----~--~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
-+.+.+++.|.++.++....+ +.. . .-.++||+|+.+. . . ....+.++.+.+.++|++-+
T Consensus 20 ~i~~~~~~~g~~v~~~~~~~~--~~~~~~~~~~~~~~~~dgii~~~~-~---~-----~~~~~~l~~l~~~~ipvv~~ 86 (268)
T cd06323 20 GAQKEAKELGYELTVLDAQND--AAKQLNDIEDLITRGVDAIIINPT-D---S-----DAVVPAVKAANEAGIPVFTI 86 (268)
T ss_pred HHHHHHHHcCceEEecCCCCC--HHHHHHHHHHHHHcCCCEEEEcCC-C---h-----HHHHHHHHHHHHCCCcEEEE
Confidence 445666667877766543211 110 0 0147999999632 1 1 11223344555567887655
No 380
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=36.47 E-value=1.1e+02 Score=22.91 Aligned_cols=58 Identities=12% Similarity=0.192 Sum_probs=36.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-C---C--CCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-D---F--GSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-~---~--~~~d~iii~G~ 67 (126)
..|+|+-.+..++.. .+...-+.+.+++.|..+-+++...+ +..+ . + ...||+|+.+.
T Consensus 2 ~~IGvivp~~~npff----~~ii~gIe~~a~~~Gy~l~l~~t~~~--~~~e~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 2 KTIGVIVPDISNPFF----AEIIRGIEQEAREHGYQLLLCNTGDD--EEKEEYIELLLQRRVDGIILASS 65 (279)
T ss_dssp CEEEEEESSSTSHHH----HHHHHHHHHHHHHTTCEEEEEEETTT--HHHHHHHHHHHHTTSSEEEEESS
T ss_pred CEEEEEECCCCCcHH----HHHHHHHHHHHHHcCCEEEEecCCCc--hHHHHHHHHHHhcCCCEEEEecc
Confidence 578888888876642 22344455677788988877664322 1100 0 1 57999999954
No 381
>PLN00060 meiotic recombination protein SPO11-2; Provisional
Probab=36.32 E-value=1.4e+02 Score=24.30 Aligned_cols=50 Identities=16% Similarity=0.134 Sum_probs=34.7
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhc--CCcEEEEc----hHHHHHHHHhCCcc
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSL--RKKVLGIC----FGHQVRAITVFSSH 113 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~--~~PvlGIC----~G~Q~la~~~Gg~v 113 (126)
..+..|+|+|-..+. ...+.+++.+.+. +.|+++.+ +|..+++..--|..
T Consensus 233 ~~~~cILITgKGyPD-------~aTR~fL~~L~~~~p~lPv~~LvD~DP~Gi~I~~tYkyGS~ 288 (384)
T PLN00060 233 NHIPCILITAKGYPD-------LATRFILHRLSQTFPNLPILALVDWNPAGLAILCTYKFGSI 288 (384)
T ss_pred hhCCEEEEecCCCCC-------HHHHHHHHHHHHhcCCCCEEEEECCCcchHHHHHHhhcCch
Confidence 345689999865432 2245566666553 79999998 99999988665544
No 382
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=36.26 E-value=65 Score=23.27 Aligned_cols=45 Identities=24% Similarity=0.133 Sum_probs=31.2
Q ss_pred CEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH--------HHHHHHHh
Q 033165 60 DGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG--------HQVRAITV 109 (126)
Q Consensus 60 d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G--------~Q~la~~~ 109 (126)
..|++.|++....+ ..+.+.++++.+.++.+.-|++| .|.+.++.
T Consensus 109 rivi~v~S~~~~d~-----~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~ 161 (187)
T cd01452 109 RIVAFVGSPIEEDE-----KDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAV 161 (187)
T ss_pred eEEEEEecCCcCCH-----HHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHh
Confidence 34888888754321 23556777888889999999999 45555555
No 383
>PRK11303 DNA-binding transcriptional regulator FruR; Provisional
Probab=36.21 E-value=1.8e+02 Score=21.68 Aligned_cols=59 Identities=7% Similarity=0.079 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----CC--CCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----DD--FGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~~--~~~~d~iii~G~ 67 (126)
..|+++..+..++.. .....-+.+.+++.|.++.++....+ .... +. -..+||+|+.+.
T Consensus 62 ~~Igvv~~~~~~~~~----~~l~~gi~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiIi~~~ 126 (328)
T PRK11303 62 RSIGLIIPDLENTSY----ARIAKYLERQARQRGYQLLIACSDDQ-PDNEMRCAEHLLQRQVDALIVSTS 126 (328)
T ss_pred ceEEEEeCCCCCchH----HHHHHHHHHHHHHcCCEEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEcCC
Confidence 467777654333211 11223344556677888877654321 1000 00 147999999764
No 384
>PRK13059 putative lipid kinase; Reviewed
Probab=35.86 E-value=1.9e+02 Score=21.90 Aligned_cols=63 Identities=17% Similarity=0.114 Sum_probs=34.3
Q ss_pred CCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~~~~~d~iii~G~~~ 69 (126)
|+|++++.+...-. ...+ ....+.+.+++.+.++.++......-.. ....+.+|.||+.||-.
T Consensus 1 ~~~~~~I~NP~aG~g~~~~----~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDG 67 (295)
T PRK13059 1 MKKVKFIYNPYSGENAIIS----ELDKVIRIHQEKGYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDG 67 (295)
T ss_pred CcEEEEEECCcccchhHHH----HHHHHHHHHHHCCcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCcc
Confidence 45777776644321 1111 1223567778888887766543211000 01124689999999954
No 385
>PF01866 Diphthamide_syn: Putative diphthamide synthesis protein; InterPro: IPR002728 Members of this family include Q16439 from SWISSPROT, a candidate tumour suppressor gene [], and DPH2 from yeast P32461 from SWISSPROT [], which confers resistance to diphtheria toxin and has been found to be involved in diphthamide synthesis. Diphtheria toxin inhibits eukaryotic protein synthesis by ADP-ribosylating diphthamide, a posttranslationally modified histidine residue present in EF2. The exact function of the members of this family is unknown.; GO: 0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine, 0005737 cytoplasm; PDB: 3LZD_B 3LZC_A.
Probab=35.49 E-value=1.8e+02 Score=22.48 Aligned_cols=65 Identities=14% Similarity=0.178 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDA 71 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~ 71 (126)
.++++||..--.... |-.-...+.+.+++.|.+.-++.+.+-..+....+.+.|+.|+.+-|..+
T Consensus 209 a~~~GIiv~tl~~q~----~~~~~~~l~~~l~~~gkk~y~~~~~~i~~~kL~nf~eid~fV~~aCPr~~ 273 (307)
T PF01866_consen 209 AKTFGIIVGTLGGQG----YLELIKRLKKLLKKAGKKSYTLSVGEINPAKLANFPEIDAFVQIACPRLS 273 (307)
T ss_dssp --EEEEEEE-STTT------HHHHHHHHHHHHHTT-EEEEEEESS--GGGGTTS---SEEEE-S-THHH
T ss_pred CCEEEEEEecCCCCC----CHHHHHHHHHHHHHcCCEEEEEEECCCCHHHHhcCcccCEEEEecCCCcc
Confidence 468888876433211 11122357778888898887776643221223345678999999987433
No 386
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=35.47 E-value=1.7e+02 Score=24.99 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.4
Q ss_pred cCCcEEEEchHHHHHHH
Q 033165 91 LRKKVLGICFGHQVRAI 107 (126)
Q Consensus 91 ~~~PvlGIC~G~Q~la~ 107 (126)
..+-++|.|.|-.+++.
T Consensus 288 ~~vnl~GyC~GGtl~a~ 304 (560)
T TIGR01839 288 RDLNLLGACAGGLTCAA 304 (560)
T ss_pred CCeeEEEECcchHHHHH
Confidence 35789999999998885
No 387
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=35.39 E-value=83 Score=24.16 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=29.5
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 61 GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 61 ~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+|+.+||+.+... ..+..+++.+.+.+..++|+..|..=|...
T Consensus 4 ~Il~sGG~apG~N-----a~i~~~v~~a~~~g~~v~g~~~G~~GL~~~ 46 (282)
T PF00365_consen 4 AILTSGGDAPGMN-----AAIRGVVRYAIRRGWEVYGIRNGFEGLLNG 46 (282)
T ss_dssp EEEEESS--TTHH-----HHHHHHHHHHHHTTSEEEEETTHHHHHHHC
T ss_pred EEEecCCCchhhh-----HHHHHHHHHHHhcCCEEEEEEccCccceee
Confidence 5777888754321 224556666667889999999999988763
No 388
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=35.21 E-value=1.1e+02 Score=23.59 Aligned_cols=43 Identities=9% Similarity=0.042 Sum_probs=23.5
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEE-EEc
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVL-GIC 99 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~Pvl-GIC 99 (126)
...|||++.|+...... +.....++.+...+....++|++ |++
T Consensus 40 ~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~ 84 (303)
T PRK03620 40 YGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAG 84 (303)
T ss_pred cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecC
Confidence 46899999998654322 11112223333333344568876 665
No 389
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=34.90 E-value=2.1e+02 Score=21.87 Aligned_cols=56 Identities=16% Similarity=0.089 Sum_probs=25.2
Q ss_pred EcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEc
Q 033165 10 LCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVIT 65 (126)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~ 65 (126)
+-+...+.-+++|-.|..-+...|+..+..+.+.-+.... +.-..-....|-++++
T Consensus 111 D~E~~~~~d~~~~~~fl~eL~~~l~~~~~~lsv~v~~~~~~~d~~~l~~~~D~v~lM 167 (298)
T cd06549 111 DFEELPADDLPKYVAFLSELRRRLPAQGKQLTVTVPADEADWNLKALARNADKLILM 167 (298)
T ss_pred ecCCCChhHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCCCCCHHHHHHhCCEEEEE
Confidence 3333333334444444445555666656666654332211 1000112456777774
No 390
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=34.82 E-value=2.1e+02 Score=23.47 Aligned_cols=33 Identities=24% Similarity=0.007 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
.+||+|+..+. ..-.+.+.+++.|.++..+...
T Consensus 2 ~~kvLi~~~ge-----------ia~~ii~a~~~~Gi~~v~v~~~ 34 (472)
T PRK07178 2 IKKILIANRGE-----------IAVRIVRACAEMGIRSVAIYSE 34 (472)
T ss_pred CcEEEEECCcH-----------HHHHHHHHHHHcCCeEEEEeCC
Confidence 46999994433 2345778888999888776543
No 391
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=34.74 E-value=2e+02 Score=23.29 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
.+||+|+-.+..-. -+.++|...|.++..++.
T Consensus 14 ~~~i~v~G~G~sG~-----------a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 14 NKKVAVVGIGVSNI-----------PLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred CCeEEEEcccHHHH-----------HHHHHHHHCCCEEEEECC
Confidence 35788886665421 245677777877766653
No 392
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=34.74 E-value=1.6e+02 Score=20.60 Aligned_cols=67 Identities=21% Similarity=0.177 Sum_probs=37.6
Q ss_pred CHHHHHHHHHhhCCCeEEEEEccC-CCCC--------------CC-C---CCCCcCEEEEcCCCCCCCCC-----chHHH
Q 033165 24 GYFGVFVRMLAEEGETWDVFHVAR-GEFP--------------DD-D---DFGSYDGYVITGSCNDAHGN-----DVWIC 79 (126)
Q Consensus 24 ~~~~~~~~~l~~~g~~~~~~~~~~-~~~p--------------~~-~---~~~~~d~iii~G~~~~~~~~-----~~~~~ 79 (126)
.|+..+.+.|++.+.++++++-.- ++-. .. + ....+|.|+|..|..+.... ..+..
T Consensus 26 ~w~~~L~~~l~~~~~~~~viN~Gv~G~tt~~~~~~~~~~~~l~~l~~~l~~~~~pd~vii~lGtND~~~~~~~~~~~~~~ 105 (208)
T cd01839 26 RWPGVLEKALGANGENVRVIEDGLPGRTTVLDDPFFPGRNGLTYLPQALESHSPLDLVIIMLGTNDLKSYFNLSAAEIAQ 105 (208)
T ss_pred CCHHHHHHHHccCCCCeEEEecCcCCcceeccCccccCcchHHHHHHHHHhCCCCCEEEEeccccccccccCCCHHHHHH
Confidence 588888888876666677775321 1100 00 0 01478999999887654321 13444
Q ss_pred HHHHHHHHHHh
Q 033165 80 KLIALLKQLDS 90 (126)
Q Consensus 80 ~~~~~i~~~~~ 90 (126)
.+.++++.+.+
T Consensus 106 ~l~~lv~~i~~ 116 (208)
T cd01839 106 GLGALVDIIRT 116 (208)
T ss_pred HHHHHHHHHHh
Confidence 55555655543
No 393
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=34.69 E-value=2.1e+02 Score=23.10 Aligned_cols=54 Identities=11% Similarity=0.075 Sum_probs=31.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC----C----------CCCCCCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE----F----------PDDDDFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----~----------p~~~~~~~~d~iii~G~ 67 (126)
+||+|+-.+..-- ..+.++|.+.|.++...+....+ + -.++.++++|.||++.|
T Consensus 8 ~~v~viG~G~sG~----------s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spg 75 (461)
T PRK00421 8 KRIHFVGIGGIGM----------SGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSA 75 (461)
T ss_pred CEEEEEEEchhhH----------HHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCC
Confidence 5788887765422 12456777888877666532110 0 00123457898888766
No 394
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=34.46 E-value=37 Score=27.45 Aligned_cols=50 Identities=20% Similarity=0.236 Sum_probs=35.4
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-------CCCCcCEEEEc
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-------DFGSYDGYVIT 65 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-------~~~~~d~iii~ 65 (126)
|++|+.+ |.|.+++.+.++..|.+++++....++..+++ .-.+++.|.+.
T Consensus 82 kVLv~~n-----------G~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~v 138 (383)
T COG0075 82 KVLVVVN-----------GKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVV 138 (383)
T ss_pred eEEEEeC-----------ChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEE
Confidence 7777755 56889999999999999999987654432221 12367788775
No 395
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=34.41 E-value=31 Score=27.01 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=21.7
Q ss_pred CCCcCEEEEc-CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 56 FGSYDGYVIT-GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 56 ~~~~d~iii~-G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
+.+.|.|||. |++..+-...--++ -|++++ .+.|+.+||
T Consensus 183 I~~AD~IiiGPgnp~TSI~P~L~v~----gi~eAL-~~a~vV~Vs 222 (303)
T PRK13606 183 IEEADAVIIGPSNPVTSIGPILAVP----GIREAL-TEAPVVAVS 222 (303)
T ss_pred HHhCCEEEECCCccHHhhchhccch----hHHHHH-hCCCEEEEc
Confidence 4678988885 44433222111122 244444 678999888
No 396
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=34.24 E-value=3e+02 Score=25.27 Aligned_cols=43 Identities=19% Similarity=-0.010 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
++||+||-.++..-..-.+++-..-.+.+.+++.|.++-+++.
T Consensus 554 ~kkvlilG~G~~~ig~~~efdy~~v~~i~alk~~G~~vi~v~~ 596 (1066)
T PRK05294 554 RKKVLVLGSGPNRIGQGIEFDYCCVHAVLALREAGYETIMVNC 596 (1066)
T ss_pred CceEEEECccccccccccccchhHHHHHHHHHHCCCEEEEEeC
Confidence 5799999776642111111111222455778888998877764
No 397
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=34.21 E-value=1.6e+02 Score=22.11 Aligned_cols=81 Identities=9% Similarity=0.014 Sum_probs=40.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEE-cCCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI-TGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii-~G~~~~~~~~~~~~~~~~ 82 (126)
.||.|+-.+...... ..+...|.+.|..+..+.-..........+..-|.+|+ +-++.+ ..+.
T Consensus 141 ~~I~i~G~G~S~~~A--------~~l~~~l~~~g~~~~~~~d~~~~~~~~~~~~~~Dl~I~iS~sG~t--------~~~~ 204 (292)
T PRK11337 141 RQRDLYGAGGSAAIA--------RDVQHKFLRIGVRCQAYDDAHIMLMSAALLQEGDVVLVVSHSGRT--------SDVI 204 (292)
T ss_pred CeEEEEEecHHHHHH--------HHHHHHHhhCCCeEEEcCCHHHHHHHHhcCCCCCEEEEEeCCCCC--------HHHH
Confidence 567777665432211 12444455667766554211000001112344554444 433221 2355
Q ss_pred HHHHHHHhcCCcEEEEch
Q 033165 83 ALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~ 100 (126)
+.++.+.+.+.|+++|+-
T Consensus 205 ~~~~~ak~~g~~ii~IT~ 222 (292)
T PRK11337 205 EAVELAKKNGAKIICITN 222 (292)
T ss_pred HHHHHHHHCCCeEEEEeC
Confidence 667777778999999984
No 398
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=34.19 E-value=27 Score=27.97 Aligned_cols=34 Identities=26% Similarity=0.196 Sum_probs=20.1
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
..|-|++-||-..+ ++.. ..+..++|+|||=.|-
T Consensus 100 gVdlIvfaGGDGTa----------rDVa-~av~~~vPvLGipaGv 133 (355)
T COG3199 100 GVDLIVFAGGDGTA----------RDVA-EAVGADVPVLGIPAGV 133 (355)
T ss_pred CceEEEEeCCCccH----------HHHH-hhccCCCceEeecccc
Confidence 36666666664332 1222 2235689999998774
No 399
>PF07598 DUF1561: Protein of unknown function (DUF1561); InterPro: IPR011455 This is a family of paralogous proteins in Leptospira interrogans.
Probab=34.13 E-value=60 Score=27.80 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHHhcCCcE---EEEc--hHHHHHHHHh
Q 033165 76 VWICKLIALLKQLDSLRKKV---LGIC--FGHQVRAITV 109 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~Pv---lGIC--~G~Q~la~~~ 109 (126)
+|++++-++-+......... .||| ..+||||+..
T Consensus 370 eW~rRL~~IA~St~~~~~~~iG~CGvClLqt~QMlAELq 408 (632)
T PF07598_consen 370 EWIRRLWQIARSTTPGGQERIGICGVCLLQTFQMLAELQ 408 (632)
T ss_pred HHHHHHHHHHhhcCCCCceeeeechhHHHHHHHHHHHHH
Confidence 68888877766655344444 4555 5889999954
No 400
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.81 E-value=1.7e+02 Score=20.73 Aligned_cols=38 Identities=13% Similarity=0.107 Sum_probs=20.5
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
-+.+..++.|.++.++....+ +.. +. -..+||+|+.+.
T Consensus 20 g~~~~a~~~g~~~~~~~~~~~--~~~~~~~i~~~~~~~vdgiii~~~ 64 (268)
T cd06289 20 GLEEVLEEAGYTVFLANSGED--VERQEQLLSTMLEHGVAGIILCPA 64 (268)
T ss_pred HHHHHHHHcCCeEEEecCCCC--hHHHHHHHHHHHHcCCCEEEEeCC
Confidence 344566667877655432211 110 00 147899999865
No 401
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=33.76 E-value=1.5e+02 Score=19.91 Aligned_cols=43 Identities=14% Similarity=0.080 Sum_probs=27.2
Q ss_pred CCcCEEEEcCCCCCCCCC---chHHHHHHHHHHHHHh--cCCcEEEEc
Q 033165 57 GSYDGYVITGSCNDAHGN---DVWICKLIALLKQLDS--LRKKVLGIC 99 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~---~~~~~~~~~~i~~~~~--~~~PvlGIC 99 (126)
.++|.|++..|..+.... ..+...+.++++.+.+ .+.+++-+.
T Consensus 47 ~~pd~vvl~~G~ND~~~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~ 94 (169)
T cd01828 47 LQPKAIFIMIGINDLAQGTSDEDIVANYRTILEKLRKHFPNIKIVVQS 94 (169)
T ss_pred cCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 367888887775554322 2466667777777766 566766654
No 402
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=33.71 E-value=1.8e+02 Score=20.98 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=24.2
Q ss_pred HHHHHHHHhhCCCeEEEEEccCCC-CCC-CCC-C--CCcCEEEEcCC
Q 033165 26 FGVFVRMLAEEGETWDVFHVARGE-FPD-DDD-F--GSYDGYVITGS 67 (126)
Q Consensus 26 ~~~~~~~l~~~g~~~~~~~~~~~~-~p~-~~~-~--~~~d~iii~G~ 67 (126)
..-+.+.+++.|.++.++.....+ ... ... + ...||||+.+.
T Consensus 18 ~~~i~~~~~~~gy~~~~~~~~~~~~~~~~~~~~l~~~~vdgvi~~~~ 64 (269)
T cd06297 18 LEGIEGALLEQRYDLALFPLLSLARLKRYLESTTLAYLTDGLLLASY 64 (269)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 344556677788888887643211 000 001 1 36999999865
No 403
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=33.63 E-value=1.6e+02 Score=21.41 Aligned_cols=54 Identities=15% Similarity=0.069 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC--------CCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD--------DFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~--------~~~~~d~iii~G~ 67 (126)
..||+++......+ .+.+.|++.|.+++.+.+++...+... .-.++|.|+++-+
T Consensus 118 ~~~vL~~rg~~~r~-----------~l~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~i~f~S~ 179 (240)
T PRK09189 118 TARLLYLAGRPRAP-----------VFEDRLAAAGIPFRVAECYDMLPVMYSPATLSAILGGAPFDAVLLYSR 179 (240)
T ss_pred CCcEEEeccCcccc-----------hhHHHHHhCCCeeEEEEEEEeecCCCChHHHHHHHhcCCCCEEEEeCH
Confidence 35778887655432 367788889998876665532211110 1135888888744
No 404
>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=33.52 E-value=44 Score=24.52 Aligned_cols=49 Identities=14% Similarity=0.318 Sum_probs=28.6
Q ss_pred CcCEEEEcCCCCCCCCCc-----hHHHHHHH-HHHHHHhcCCcEEEEchHHHHHH
Q 033165 58 SYDGYVITGSCNDAHGND-----VWICKLIA-LLKQLDSLRKKVLGICFGHQVRA 106 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~-----~~~~~~~~-~i~~~~~~~~PvlGIC~G~Q~la 106 (126)
..|.+++||-..+....- .+..++.. .-..+-+...-.+|+|+=-|++.
T Consensus 128 ~lDLiivPGvAFd~~g~RlGhGkGYYD~flkry~~~~~~~kp~~vgL~l~EQI~~ 182 (200)
T KOG3093|consen 128 PLDLIIVPGVAFDRKGARLGHGKGYYDDFLKRYQIHAPEQKPLLVGLCLKEQILS 182 (200)
T ss_pred cceEEEecccccchhhhhccCCcchHHHHHHHHHHhccccCchhhhhhhhHhhcc
Confidence 489999999876543311 23333221 11122122344789999999986
No 405
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=33.27 E-value=1.1e+02 Score=21.29 Aligned_cols=46 Identities=13% Similarity=-0.025 Sum_probs=24.3
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEE----EchHHHHH
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLG----ICFGHQVR 105 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG----IC~G~Q~l 105 (126)
+..+|||.+.. +..+......+.+.++++.+.++|+++ .|.|.-..
T Consensus 39 ~v~~vvl~~~~--~gg~~~~~~~~~~~i~~~~~~~kpVia~v~G~a~g~g~~ 88 (177)
T cd07014 39 KVKAIVLRVNS--PGGSVTASEVIRAELAAARAAGKPVVASGGGNAASGGYW 88 (177)
T ss_pred CceEEEEEeeC--CCcCHHHHHHHHHHHHHHHhCCCCEEEEECCchhHHHHH
Confidence 45667765531 111222233445566666667899985 55544443
No 406
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=33.13 E-value=1.6e+02 Score=21.04 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=29.4
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-C-----CCCCcCEEEEcCC
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-D-----DFGSYDGYVITGS 67 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~-----~~~~~d~iii~G~ 67 (126)
|+|+-.+..++.. ..+..-+.+.+++.|..+.++....+ .... + .-..+||+|+.+.
T Consensus 2 igvi~p~~~~~~~----~~~~~gi~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06285 2 IGVLVPRLTDTVM----ATMYEGIEEAAAERGYSTFVANTGDN-PDAQRRAIEMLLDRRVDGLILGDA 64 (265)
T ss_pred EEEEeCCCCCccH----HHHHHHHHHHHHHCCCEEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEecC
Confidence 4566554433221 12334456677778888765543221 1100 0 1247999999754
No 407
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=32.80 E-value=1.7e+02 Score=20.36 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=42.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----CCCCCcCEEEEcCCCCCCCCCch
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----DDFGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~~~~~~d~iii~G~~~~~~~~~~ 76 (126)
|.++||+|...+-+.. +.=...+.++|+..|+++...-... -|.. .--++.|.|.+++=.. ....
T Consensus 10 g~rprvlvak~GlDgH------d~gakvia~~l~d~GfeVi~~g~~~--tp~e~v~aA~~~dv~vIgvSsl~g---~h~~ 78 (143)
T COG2185 10 GARPRVLVAKLGLDGH------DRGAKVIARALADAGFEVINLGLFQ--TPEEAVRAAVEEDVDVIGVSSLDG---GHLT 78 (143)
T ss_pred CCCceEEEeccCcccc------ccchHHHHHHHHhCCceEEecCCcC--CHHHHHHHHHhcCCCEEEEEeccc---hHHH
Confidence 3567888887764432 2234567889999998876543221 1210 0116789999986421 1112
Q ss_pred HHHHHHHHHHHH
Q 033165 77 WICKLIALLKQL 88 (126)
Q Consensus 77 ~~~~~~~~i~~~ 88 (126)
....+.+.+++.
T Consensus 79 l~~~lve~lre~ 90 (143)
T COG2185 79 LVPGLVEALREA 90 (143)
T ss_pred HHHHHHHHHHHh
Confidence 344455555543
No 408
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.70 E-value=1.3e+02 Score=21.37 Aligned_cols=39 Identities=10% Similarity=0.074 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCC----CC--CCCcCEEEEcCC
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDD----DD--FGSYDGYVITGS 67 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~----~~--~~~~d~iii~G~ 67 (126)
-+.+.+++.|..+.++....+ .+.. +. -.++||||+.+.
T Consensus 20 ~i~~~a~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 20 GIEDVCRAHGYQVLVCNSDND-PEKEKEYLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHHcCCEEEEEcCCCC-HHHHHHHHHHHHHcCcCEEEEeCC
Confidence 344566677877765543211 1100 01 147899999765
No 409
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=32.38 E-value=1.9e+02 Score=21.77 Aligned_cols=34 Identities=9% Similarity=0.075 Sum_probs=25.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR 47 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 47 (126)
..||+++......+ .+.+.|++.|.+++.+.+|+
T Consensus 138 g~~vLi~rg~~gr~-----------~L~~~L~~~G~~V~~~~vY~ 171 (266)
T PRK08811 138 LQAVGLITAPGGRG-----------LLAPTLQQRGARILRADVYQ 171 (266)
T ss_pred CCEEEEEeCCCcHH-----------HHHHHHHHCCCEEeEEEEEe
Confidence 35788887776543 47788899999988776664
No 410
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=32.36 E-value=1.7e+02 Score=21.05 Aligned_cols=41 Identities=5% Similarity=0.045 Sum_probs=23.5
Q ss_pred HHHHHHHHhhCCCeEEEEEccCCCCCCC----C--CCCCcCEEEEcCC
Q 033165 26 FGVFVRMLAEEGETWDVFHVARGEFPDD----D--DFGSYDGYVITGS 67 (126)
Q Consensus 26 ~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~--~~~~~d~iii~G~ 67 (126)
..-+.+.+++.|.++.++....+. ... + .-..+||+|+.+.
T Consensus 18 ~~g~~~~a~~~g~~~~~~~~~~~~-~~~~~~i~~~~~~~vdgii~~~~ 64 (268)
T cd06270 18 LSGVESVARKAGKHLIITAGHHSA-EKEREAIEFLLERRCDALILHSK 64 (268)
T ss_pred HHHHHHHHHHCCCEEEEEeCCCch-HHHHHHHHHHHHcCCCEEEEecC
Confidence 334556667788888776532211 100 0 1157999999875
No 411
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=32.22 E-value=2.6e+02 Score=22.22 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=47.3
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc-CCCCCCC--CCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA-RGEFPDD--DDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~p~~--~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
+||+|+......- ... -...+....+..|.++....+. .++.+.. .-..+.|.|++|=.... ...
T Consensus 160 k~Igv~Y~p~E~n-s~~----l~eelk~~A~~~Gl~vve~~v~~~ndi~~a~~~l~g~~d~i~~p~dn~i-------~s~ 227 (322)
T COG2984 160 KSIGVLYNPGEAN-SVS----LVEELKKEARKAGLEVVEAAVTSVNDIPRAVQALLGKVDVIYIPTDNLI-------VSA 227 (322)
T ss_pred eeEEEEeCCCCcc-cHH----HHHHHHHHHHHCCCEEEEEecCcccccHHHHHHhcCCCcEEEEecchHH-------HHH
Confidence 6888887765521 111 1234667777889888766553 2333321 11367888888733211 123
Q ss_pred HHHHHHHHHhcCCcEEE
Q 033165 81 LIALLKQLDSLRKKVLG 97 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlG 97 (126)
...+++.+.++++|+++
T Consensus 228 ~~~l~~~a~~~kiPli~ 244 (322)
T COG2984 228 IESLLQVANKAKIPLIA 244 (322)
T ss_pred HHHHHHHHHHhCCCeec
Confidence 44567777778999875
No 412
>PLN02812 5-formyltetrahydrofolate cyclo-ligase
Probab=32.19 E-value=43 Score=24.41 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=29.9
Q ss_pred CCcCEEEEcCCCCCCCCCc-----hHHHHHHHHHHHHH-hc---CCcEEEEchHHHHHH
Q 033165 57 GSYDGYVITGSCNDAHGND-----VWICKLIALLKQLD-SL---RKKVLGICFGHQVRA 106 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~-----~~~~~~~~~i~~~~-~~---~~PvlGIC~G~Q~la 106 (126)
.+.|.+|+||-..+....- .|..++.+-+++.- +. ..+.+|+|+-.|++.
T Consensus 130 ~~iDliiVP~lafD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~ 188 (211)
T PLN02812 130 EPLDLLLLPGLAFDRSGRRLGRGGGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILD 188 (211)
T ss_pred CCCCEEEeCceEECCCCCcCcCCCchHHHHHHHhhhhhccccCCCceEEEEeeheeeEC
Confidence 4568999998765543211 45666544332110 11 234999999999885
No 413
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=32.18 E-value=1e+02 Score=24.62 Aligned_cols=51 Identities=10% Similarity=0.016 Sum_probs=35.9
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
+.|+.|+|.|-|.-...+.....++..+|..+.+++++++-. ...-+.+.+
T Consensus 284 ~~F~ti~I~~VP~l~~~~~n~arRFI~LID~LYd~~v~L~~s--a~~~~~~L~ 334 (362)
T PF03969_consen 284 ERFHTIFISDVPVLSESDRNEARRFITLIDVLYDRKVKLIIS--AAAPPDELF 334 (362)
T ss_pred HhCCEEEEcCCCCcccCChhHHHHHHHHHHHHhhCCCcEEEE--cCCCHHHHH
Confidence 589999999998654334456678888999999988888543 333344433
No 414
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=32.08 E-value=51 Score=24.48 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=22.3
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
.+|.||+.... . ....++++.+.++|+.|+|
T Consensus 155 ~Pd~vii~d~~----~-------~~~ai~Ea~~l~IP~I~iv 185 (225)
T TIGR01011 155 LPDLLFVIDPV----K-------EKIAVAEARKLGIPVVAIV 185 (225)
T ss_pred CCCEEEEeCCC----c-------cHHHHHHHHHcCCCEEEEe
Confidence 57888888652 1 1234677777899999998
No 415
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=31.56 E-value=1.6e+02 Score=23.12 Aligned_cols=84 Identities=15% Similarity=0.020 Sum_probs=43.7
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHHHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWICKLIA 83 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~~~~~ 83 (126)
|+.|.+.++..+ ...+.+.|++.|++++++.-.... --+++.|.+++..=..-..... ..+.. ..
T Consensus 147 ~V~VtESRP~~e---------G~~~ak~L~~~gI~~~~I~Dsa~~----~~~~~vd~VivGad~I~~nG~lvnkiGT-~~ 212 (301)
T COG1184 147 KVIVTESRPRGE---------GRIMAKELRQSGIPVTVIVDSAVG----AFMSRVDKVLVGADAILANGALVNKIGT-SP 212 (301)
T ss_pred EEEEEcCCCcch---------HHHHHHHHHHcCCceEEEechHHH----HHHHhCCEEEECccceecCCcEEeccch-HH
Confidence 666666666543 234678888999888877521110 1235778777753211110011 11111 11
Q ss_pred HHHHHHhcCCcEEEEchHH
Q 033165 84 LLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~ 102 (126)
+...+.+.++|+..+|--+
T Consensus 213 lA~~A~e~~~Pf~v~aesy 231 (301)
T COG1184 213 LALAARELRVPFYVVAESY 231 (301)
T ss_pred HHHHHHHhCCCEEEEeeee
Confidence 2223445799999887544
No 416
>PRK10222 PTS system L-ascorbate-specific transporter subunit IIB; Provisional
Probab=31.48 E-value=1.3e+02 Score=18.63 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=22.2
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
+.++|++.|++.++.+..-.+.+. .++.+|.+|.+
T Consensus 7 Ik~~L~e~Gi~~~ve~~diss~~~--~~~~aDiiVtt 41 (85)
T PRK10222 7 VDQFLTQSNIDHTVNSCAVGEYKS--ELSGADIIIAS 41 (85)
T ss_pred HHHHHHHcCCCeEEEEeehhhccc--CCCCCCEEEEC
Confidence 567889999977766544333332 34467777765
No 417
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=31.27 E-value=1.8e+02 Score=20.08 Aligned_cols=76 Identities=17% Similarity=0.084 Sum_probs=41.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc-CCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT-GSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~-G~~~~~~~~~~~~~~~~ 82 (126)
.||.++-.+...... ..+...|...|..+.... +... ..+.+-|.+|+. -++.+ ....
T Consensus 31 ~~I~i~G~G~S~~~A--------~~~~~~l~~~g~~~~~~~---~~~~--~~~~~~Dv~I~iS~sG~t--------~~~i 89 (179)
T TIGR03127 31 KRIFVAGAGRSGLVG--------KAFAMRLMHLGFNVYVVG---ETTT--PSIKKGDLLIAISGSGET--------ESLV 89 (179)
T ss_pred CEEEEEecCHHHHHH--------HHHHHHHHhCCCeEEEeC---Cccc--CCCCCCCEEEEEeCCCCc--------HHHH
Confidence 466666665442211 123444555676655443 1111 134455655554 33221 3456
Q ss_pred HHHHHHHhcCCcEEEEch
Q 033165 83 ALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~ 100 (126)
+.++.+.+.+.|+++|+-
T Consensus 90 ~~~~~ak~~g~~ii~IT~ 107 (179)
T TIGR03127 90 TVAKKAKEIGATVAAITT 107 (179)
T ss_pred HHHHHHHHCCCeEEEEEC
Confidence 677777778999999984
No 418
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase subunit. This model represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase is designated EC 6.4.1.2 and this component, biotin carboxylase, has its own designation, EC 6.3.4.14. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase), but seed members and trusted cutoff are selected so as to exclude these. In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.
Probab=31.25 E-value=2.8e+02 Score=22.36 Aligned_cols=32 Identities=19% Similarity=-0.008 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
++||+|+..+. ..-.+.+.+++.|.++-.+..
T Consensus 2 ~kkili~g~g~-----------~~~~~~~aa~~lG~~vv~~~~ 33 (449)
T TIGR00514 2 LDKILIANRGE-----------IALRILRACKELGIKTVAVHS 33 (449)
T ss_pred cceEEEeCCCH-----------HHHHHHHHHHHcCCeEEEEEC
Confidence 67999994332 233567788889998877754
No 419
>PRK10446 ribosomal protein S6 modification protein; Provisional
Probab=31.12 E-value=1.7e+02 Score=22.14 Aligned_cols=54 Identities=9% Similarity=0.042 Sum_probs=33.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----------CCCCCCcCEEEEc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----------DDDFGSYDGYVIT 65 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----------~~~~~~~d~iii~ 65 (126)
||++||-.+..... ...+.+.+++.|.++..+.+.+..+.. ...+.++|++++.
T Consensus 1 m~~~i~~~~~s~~s--------~~~~~~a~~~~g~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~ 64 (300)
T PRK10446 1 MKIAILSRDGTLYS--------CKRLREAAIQRGHLVEILDPLSCYMNINPAASSIHYKGRKLPHFDAVIPR 64 (300)
T ss_pred CeEEEEecCCcchh--------HHHHHHHHHHcCCeEEEEehHHceEecCCCcccEEECCcccCCCCEEEEc
Confidence 47888865544221 235778889999999988865321110 0123478998874
No 420
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=30.97 E-value=1.7e+02 Score=19.72 Aligned_cols=57 Identities=16% Similarity=0.078 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----CCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----DDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~~~~~~d~iii~G~ 67 (126)
+.||++...+.+......+ .+..+|+..|+++...... ..|.. ..-.+.|.|.+++-
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~------iv~~~l~~~GfeVi~lg~~--~s~e~~v~aa~e~~adii~iSsl 62 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAK------VIATAYADLGFDVDVGPLF--QTPEEIARQAVEADVHVVGVSSL 62 (132)
T ss_pred CCEEEEEeeCCCccHHHHH------HHHHHHHhCCcEEEECCCC--CCHHHHHHHHHHcCCCEEEEcCc
Confidence 4688888888766555443 4667888888776543322 11110 01257899999866
No 421
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=30.54 E-value=1.9e+02 Score=22.80 Aligned_cols=68 Identities=21% Similarity=0.144 Sum_probs=41.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~ 74 (126)
..+++||..--.... +-.-...+.+.+++.|.+..++.+.+-.......+.+.|..|+.+-|-.+.|+
T Consensus 232 A~~vGIlvgTl~~q~----~~~~~~~l~~ll~~~gkk~y~i~~~~in~~kL~nf~eiD~fV~~aCPr~sidd 299 (332)
T TIGR00322 232 GKKFGVVLSSKGGQG----RLRLAKNLKKNLEEAGKTVLIILLSNVSPAKLLMFDQIDVFVQVACPRIAIDD 299 (332)
T ss_pred CCEEEEEEecCccCC----CHHHHHHHHHHHHHcCCcEEEEEeCCCCHHHHhCCCCcCEEEEecCCCceecc
Confidence 467888876544321 11122346677888898887776643211122345578999999998666553
No 422
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=30.48 E-value=1.6e+02 Score=19.21 Aligned_cols=55 Identities=22% Similarity=0.208 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC------CCCCCC-CCCcCEEEEc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE------FPDDDD-FGSYDGYVIT 65 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------~p~~~~-~~~~d~iii~ 65 (126)
++|+|+-.... .+.|.+.+.+.|.+.|.++.-+++..++ +++.++ ....|.+++.
T Consensus 1 ksiAVvGaS~~-------~~~~g~~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e~p~~iDlavv~ 62 (116)
T PF13380_consen 1 KSIAVVGASDN-------PGKFGYRVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAEIPEPIDLAVVC 62 (116)
T ss_dssp -EEEEET--SS-------TTSHHHHHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGGCSST-SEEEE-
T ss_pred CEEEEEcccCC-------CCChHHHHHHHHHhCCCEEEEECCCceEECcEEeeccccCCCCCCCEEEEE
Confidence 46788855443 3568888888888888766666554321 222221 2567766665
No 423
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.32 E-value=1.9e+02 Score=20.52 Aligned_cols=39 Identities=21% Similarity=0.110 Sum_probs=22.1
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCC--CC--CCCCcCEEEEcCC
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPD--DD--DFGSYDGYVITGS 67 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~--~~--~~~~~d~iii~G~ 67 (126)
+.+.+++.|.++.++....+.-.. .+ .-...||+|+.+.
T Consensus 21 i~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~vdgiii~~~ 63 (266)
T cd06278 21 LSRALQARGYQPLLINTDDDEDLDAALRQLLQYRVDGVIVTSG 63 (266)
T ss_pred HHHHHHHCCCeEEEEcCCCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 456667788888776543211000 00 1157999999754
No 424
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=30.20 E-value=96 Score=24.77 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=25.2
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
..++||||-|..... . -..+.+.++++.++++||.=.
T Consensus 253 ~g~~GiVie~~G~G~-~----~~~~~~~i~~~~~~gi~VV~s 289 (351)
T COG0252 253 SGAKGLVLEGTGSGN-V----TPALIESIERASKRGIPVVYS 289 (351)
T ss_pred cCCCEEEEEEECCCC-C----ChHHHHHHHHHHHCCCeEEEE
Confidence 579999997643331 1 134666788888889998743
No 425
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.08 E-value=2e+02 Score=20.60 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=22.4
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCC---CCC--CCCcCEEEEcCC
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPD---DDD--FGSYDGYVITGS 67 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~---~~~--~~~~d~iii~G~ 67 (126)
-+.+.+++.|.++.+.....++-.. .+. -..+||||+.+.
T Consensus 23 ~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~ 67 (268)
T cd06277 23 AIEEEAKKYGYNLILKFVSDEDEEEFELPSFLEDGKVDGIILLGG 67 (268)
T ss_pred HHHHHHHHcCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEeCC
Confidence 3455666778888776643221000 001 147999999764
No 426
>PRK14099 glycogen synthase; Provisional
Probab=30.05 E-value=68 Score=26.41 Aligned_cols=46 Identities=9% Similarity=-0.042 Sum_probs=29.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|+.|||+.+-.+-.+=...---++...-+-+.|++.|.+++++-|.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~ 46 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPG 46 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 8889999987766431111111234445667888899999988763
No 427
>TIGR03566 FMN_reduc_MsuE FMN reductase, MsuE subfamily. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the NADH-dependent enzyme MsuE from Pseudomonas aeruginosa, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. The NADP-dependent enzyme from E. coli is outside the scope of this model.
Probab=29.73 E-value=1.9e+02 Score=19.96 Aligned_cols=88 Identities=18% Similarity=0.065 Sum_probs=42.3
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHH----h-hCCCeEEEEEccCCC-----------CCC-----CCCCCCcCEEE
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRML----A-EEGETWDVFHVARGE-----------FPD-----DDDFGSYDGYV 63 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l----~-~~g~~~~~~~~~~~~-----------~p~-----~~~~~~~d~ii 63 (126)
||++|...... ++++..+.+.+ . +.+.+++++++.+-. .|+ .+.+...|+||
T Consensus 1 kIl~i~GS~r~-------~s~t~~l~~~~~~~l~~~~g~ev~~idL~~~~~~~~~~~~~~~~~~~~~~~~~~i~~AD~iI 73 (174)
T TIGR03566 1 KVVGVSGSLTR-------PSRTLALVEALVAELAARLGISPRTIDLADLAPSLGGALWRSQLPPDAERILQAIESADLLV 73 (174)
T ss_pred CEEEEECCCCC-------CChHHHHHHHHHHHHHHhcCCeEEEEEhhhcChhhccccccCCCCHHHHHHHHHHHHCCEEE
Confidence 67777776643 24455444433 2 347788888764311 010 01235788888
Q ss_pred EcCCCCCCCCCchHHHHHHHHHHH-HHhcCCcEEEEchH
Q 033165 64 ITGSCNDAHGNDVWICKLIALLKQ-LDSLRKKVLGICFG 101 (126)
Q Consensus 64 i~G~~~~~~~~~~~~~~~~~~i~~-~~~~~~PvlGIC~G 101 (126)
+.=--++ +.-...+..+.+++.. .+ .++|++-++-|
T Consensus 74 i~tP~Y~-~s~~~~LKn~lD~~~~~~l-~~K~~~~v~~~ 110 (174)
T TIGR03566 74 VGSPVYR-GSYTGLFKHLFDLVDPNAL-IGKPVLLAATG 110 (174)
T ss_pred EECCcCc-CcCcHHHHHHHHhcCHhHh-CCCEEEEEEec
Confidence 7522111 1111223334444321 12 47887666653
No 428
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=29.69 E-value=3e+02 Score=22.18 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC-----------C-CCCCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF-----------P-DDDDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-----------p-~~~~~~~~d~iii~G~ 67 (126)
.+||+|+-.+..-- ...++|.+.|.++...+...... + ..+.+.++|.||.+.|
T Consensus 9 ~~~i~viG~G~~G~-----------~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~ 74 (460)
T PRK01390 9 GKTVAVFGLGGSGL-----------ATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPG 74 (460)
T ss_pred CCEEEEEeecHhHH-----------HHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCC
Confidence 36889998776522 13567788888877765321100 0 0012357898888655
No 429
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=29.47 E-value=2.2e+02 Score=20.52 Aligned_cols=43 Identities=14% Similarity=-0.051 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhCCCeEEEEEccCCCCCC-CC-----CCCCcCEEEEcCC
Q 033165 25 YFGVFVRMLAEEGETWDVFHVARGEFPD-DD-----DFGSYDGYVITGS 67 (126)
Q Consensus 25 ~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~-----~~~~~d~iii~G~ 67 (126)
+..-+.+.+++.|.++.++.....+... .+ .-...||+|+.+.
T Consensus 16 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 16 AEAGVKAAGKELGVDVEFVVPQQGTVNAQLRMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 3334556667788887776322111000 00 1147999999864
No 430
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=29.37 E-value=1.7e+02 Score=19.36 Aligned_cols=11 Identities=27% Similarity=0.447 Sum_probs=5.9
Q ss_pred CEEEEcCCCCC
Q 033165 60 DGYVITGSCND 70 (126)
Q Consensus 60 d~iii~G~~~~ 70 (126)
|+||++|+...
T Consensus 1 d~IvVLG~~~~ 11 (150)
T cd06259 1 DAIVVLGGGVN 11 (150)
T ss_pred CEEEEeCCccC
Confidence 45666665443
No 431
>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase. This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.
Probab=29.31 E-value=45 Score=23.54 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=29.5
Q ss_pred CCCcCEEEEcCCCCCCCCCc-----hHHHHHHHHHHHHHhcCCcEEEEchHHHHHHH
Q 033165 56 FGSYDGYVITGSCNDAHGND-----VWICKLIALLKQLDSLRKKVLGICFGHQVRAI 107 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~-----~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~ 107 (126)
.++.|.+|+||-..+....- .|.++..+. . ....+++|+|+-.|++..
T Consensus 113 ~~~idlvivP~lafD~~G~RLG~GgGyYDR~L~~---~-~~~~~~igv~~~~q~~~~ 165 (181)
T TIGR02727 113 PDEIDLIIVPGVAFDRRGYRLGYGGGYYDRFLAN---L-KGKTVVVGLAFDFQLVDE 165 (181)
T ss_pred cccCCEEEeCceEEcCCCccccCCcchHHHHHHh---c-ccCCCEEEEEecceeeCc
Confidence 35679999998755432211 355554332 2 223459999999998754
No 432
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=29.31 E-value=2.1e+02 Score=20.18 Aligned_cols=43 Identities=19% Similarity=0.051 Sum_probs=20.7
Q ss_pred cCEEEEcCCCCC---CCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 59 YDGYVITGSCND---AHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 59 ~d~iii~G~~~~---~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
.|.+|+.||... ..+...+. ........+...++|+.-+..|.
T Consensus 64 ~~~vii~GGg~~~~~~~~~~~~~-~~~~~~~~~~~~~~pv~~~g~g~ 109 (286)
T PF04230_consen 64 ADDVIIGGGGGSDNNFIDLWSLP-IFLRWLFLAKKLGKPVIILGQGI 109 (286)
T ss_pred CCeEEEECCcccccCCCcchhhH-HHHHHHHHHHhcCCCeEEECceE
Confidence 466777777411 11111222 22333444445688876555554
No 433
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.12 E-value=2.4e+02 Score=20.95 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=22.9
Q ss_pred HHHHHHHHhhCCCeEEEEEccCCCCCCC-C---C--CC--CcCEEEEcCC
Q 033165 26 FGVFVRMLAEEGETWDVFHVARGEFPDD-D---D--FG--SYDGYVITGS 67 (126)
Q Consensus 26 ~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~---~--~~--~~d~iii~G~ 67 (126)
..-+.+.+++.|.++.++....+. ... + . -. ..||||+.+.
T Consensus 19 ~~gi~~~~~~~g~~v~~~~~~~~~-~~~~~~i~~~~~~~~~vdgiIi~~~ 67 (305)
T cd06324 19 ARFMQAAADDLGIELEVLYAERDR-FLMLQQARTILQRPDKPDALIFTNE 67 (305)
T ss_pred HHHHHHHHHhcCCeEEEEeCCCCH-HHHHHHHHHHHHhccCCCEEEEcCC
Confidence 334556667778887776543211 000 0 0 14 7999999754
No 434
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=28.81 E-value=51 Score=22.20 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=14.0
Q ss_pred cCCcEEEEchHHHHHHHHhCCc
Q 033165 91 LRKKVLGICFGHQVRAITVFSS 112 (126)
Q Consensus 91 ~~~PvlGIC~G~Q~la~~~Gg~ 112 (126)
.+..+.|||-| ||+.+|-+
T Consensus 14 ~~~~i~GVCaG---iA~y~gi~ 32 (118)
T PRK10697 14 QQGMVKGVCAG---IAHYFDVP 32 (118)
T ss_pred CCCEEeeeHHH---HHHHHCCC
Confidence 46889999998 56666654
No 435
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=28.51 E-value=1.1e+02 Score=20.46 Aligned_cols=34 Identities=18% Similarity=0.199 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 76 VWICKLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
.+...+.++++.+....+-++|-|+|..+...++
T Consensus 51 ~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a 84 (228)
T PF12697_consen 51 DYAEDLAELLDALGIKKVILVGHSMGGMIALRLA 84 (228)
T ss_dssp HHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHH
T ss_pred hhhhhhhhcccccccccccccccccccccccccc
Confidence 4556667777766545677999999999877654
No 436
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=28.46 E-value=63 Score=25.31 Aligned_cols=52 Identities=10% Similarity=0.015 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC--CCCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD--DDDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~--~~~~~~~d~iii~G~ 67 (126)
||||++......+.. .+.+++++.+.++..... .++. .+.+.++|++++.+.
T Consensus 1 ~~~i~~~~~~~~e~~----------~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~d~ii~~~~ 54 (330)
T PRK12480 1 MTKIMFFGTRDYEKE----------MALNWGKKNNVEVTTSKE---LLSSATVDQLKDYDGVTTMQF 54 (330)
T ss_pred CcEEEEEeCcHHHHH----------HHHHHHHhcCeEEEEcCC---CCCHHHHHHhCCCCEEEEecC
Confidence 489999988776432 234566666655544321 1111 124567888877653
No 437
>PTZ00249 variable surface protein Vir28; Provisional
Probab=28.37 E-value=61 Score=27.25 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=28.7
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHHh--cCCcEEEEchHHHHHHHHh
Q 033165 65 TGSCNDAHGNDVWICKLIALLKQLDS--LRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 65 ~G~~~~~~~~~~~~~~~~~~i~~~~~--~~~PvlGIC~G~Q~la~~~ 109 (126)
.||-.+.+|....+......+-.+++ .-+|||||--||-+|...|
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~l~~v~p~p~~gvsg~~g~l~ll~ 456 (516)
T PTZ00249 410 AGSMQSTFDTGTIMGTIKGAVSNVLEAVEPVPVLGVSGGMGALYLLL 456 (516)
T ss_pred cccccccccchhhHHhhhHHHHHhhhccCCcceeeecccccchheee
Confidence 35666667655444444444444444 3599999999998776543
No 438
>PRK07116 flavodoxin; Provisional
Probab=28.21 E-value=2e+02 Score=19.65 Aligned_cols=41 Identities=15% Similarity=0.041 Sum_probs=20.3
Q ss_pred CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
++.+||.|++.-.-. . ...+ ..+.+++++..-.++|+.-+|
T Consensus 73 ~l~~~D~Iiig~Pv~-~-~~~p--~~v~~fl~~~~l~~k~v~~f~ 113 (160)
T PRK07116 73 NIAEYDVIFLGFPIW-W-YVAP--RIINTFLESYDFSGKTVIPFA 113 (160)
T ss_pred hHHhCCEEEEECChh-c-cccH--HHHHHHHHhcCCCCCEEEEEE
Confidence 456789877653322 1 1111 234455555322467765553
No 439
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=28.19 E-value=2.3e+02 Score=20.45 Aligned_cols=59 Identities=14% Similarity=0.022 Sum_probs=30.2
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
||+|+-.+..++.. .....-+.+.+++.|.++.+......+-+.. +. -..+||||+.+.
T Consensus 1 ~Igvi~~~~~~~f~----~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~vdgiI~~~~ 66 (268)
T cd06306 1 KLCVLYPHLKDAYW----LSVNYGMVEEAKRLGVSLKLLEAGGYPNLAKQIAQLEDCAAWGADAILLGAV 66 (268)
T ss_pred CeEEEcCCCCCHHH----HHHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 57777655443321 1222334466677788877764321100000 00 147999999754
No 440
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.16 E-value=1.8e+02 Score=19.88 Aligned_cols=41 Identities=22% Similarity=0.166 Sum_probs=26.1
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhc--CCcEEEE
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSL--RKKVLGI 98 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~--~~PvlGI 98 (126)
++|.|+|..|..+......+.+++.++++.+.+. +.|++-+
T Consensus 57 ~pd~vii~~G~ND~~~~~~~~~~~~~~i~~i~~~~p~~~iil~ 99 (177)
T cd01844 57 PADLYIIDCGPNIVGAEAMVRERLGPLVKGLRETHPDTPILLV 99 (177)
T ss_pred CCCEEEEEeccCCCccHHHHHHHHHHHHHHHHHHCcCCCEEEE
Confidence 6899999777655432224667777777776553 4566543
No 441
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=28.10 E-value=60 Score=22.73 Aligned_cols=41 Identities=24% Similarity=0.375 Sum_probs=22.5
Q ss_pred HHHHHHhhCCCeEEEEEcc-CCCCCC--CCCCCCcCEEEEcCCC
Q 033165 28 VFVRMLAEEGETWDVFHVA-RGEFPD--DDDFGSYDGYVITGSC 68 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~-~~~~p~--~~~~~~~d~iii~G~~ 68 (126)
.+.+..+..|.+++++.-. ++++-+ .+..+++|+|||=.|.
T Consensus 34 ~~~~~a~~~g~~v~~~QSN~EGelId~I~~a~~~~dgiiINpga 77 (146)
T PRK05395 34 LLEEEAAELGVELEFFQSNHEGELIDRIHEARDGADGIIINPGA 77 (146)
T ss_pred HHHHHHHHcCCEEEEEeeCcHHHHHHHHHhcccCCcEEEECchH
Confidence 4444445668888887642 121100 0123579999995553
No 442
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=28.03 E-value=2.5e+02 Score=22.13 Aligned_cols=58 Identities=22% Similarity=0.295 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC---------CCCCcCEEEEcCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD---------DFGSYDGYVITGSC 68 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~---------~~~~~d~iii~G~~ 68 (126)
+|++|+- +... .+ - .+.+.+...|++.+.++.++.-...+ |..+ .-.++|.||=.||.
T Consensus 24 ~r~livt-~~~~---~~-~-g~~~~v~~~L~~~gi~~~~~~~v~~~-p~~~~v~~~~~~~~~~~~D~IIaiGGG 90 (375)
T cd08194 24 KRPLIVT-DKVM---VK-L-GLVDKLTDSLKKEGIESAIFDDVVSE-PTDESVEEGVKLAKEGGCDVIIALGGG 90 (375)
T ss_pred CeEEEEc-Ccch---hh-c-chHHHHHHHHHHCCCeEEEECCCCCC-cCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5777664 3321 11 1 24456778888889888777533222 2211 12478999966663
No 443
>TIGR01506 ribC_arch riboflavin synthase. This archaeal protein catalyzes the same reaction, the final step in riboflavin biosynthesis, as bacterial riboflavin biosynthesis alpha chain. However, it is more similar in sequence to 6,7-dimethyl-8-ribityllumazine synthase, which catalyzes the previous reaction and which (in bacteria) is called the riboflavin synthase beta chain.
Probab=27.85 E-value=1.6e+02 Score=20.75 Aligned_cols=78 Identities=10% Similarity=-0.031 Sum_probs=45.1
Q ss_pred HHHhh--CCCeEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCCC-CCCchHHHHHHHHHHHHHhcCCcEEEE--c-
Q 033165 31 RMLAE--EGETWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCNDA-HGNDVWICKLIALLKQLDSLRKKVLGI--C- 99 (126)
Q Consensus 31 ~~l~~--~g~~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~~-~~~~~~~~~~~~~i~~~~~~~~PvlGI--C- 99 (126)
+.|++ .+.+++++++. ..|+|.. ..-.+||++|..|..-.- .+...++.....+.+-.++.++||.-| |
T Consensus 20 ~~L~~~g~g~~i~v~~VPGa~EiP~aak~l~~~~~~DaVIaLG~VIrGeT~Hfd~V~vs~GL~~lsl~~~~PVi~VlT~e 99 (151)
T TIGR01506 20 DELRKHTAGIKIIRRTVPGIKDLPVAAKKLLEEEGCEMVITLGWVGPEEKDKLSYHEASTGLIQVQLMTNKHVIDVTVHE 99 (151)
T ss_pred HHHHhcCCCCeEEEEECCcHhHHHHHHHHHHhcCCCCEEEEeceEEcCCCCcEeHHHHHHHHHHHHhhhCCCEEEEEeeC
Confidence 45556 67778877764 2233421 012479999999864221 233355644555666667789998653 1
Q ss_pred hHHHHHHHH
Q 033165 100 FGHQVRAIT 108 (126)
Q Consensus 100 ~G~Q~la~~ 108 (126)
-=.|.+.++
T Consensus 100 ~eeQA~~Ra 108 (151)
T TIGR01506 100 DEAEDPEEL 108 (151)
T ss_pred CHHHHHHHh
Confidence 344666664
No 444
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=27.69 E-value=2e+02 Score=20.43 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=29.0
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCC--CCcCEEEEcCC
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDF--GSYDGYVITGS 67 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~--~~~d~iii~G~ 67 (126)
|+++..+..++. |..+..-+.+.+++.|.++.++....+ +.. +.+ ...||+|+.+.
T Consensus 2 i~~v~~~~~~~~----~~~~~~~i~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~vdgiii~~~ 64 (267)
T cd06284 2 ILVLVPDIANPF----FSEILKGIEDEAREAGYGVLLGDTRSD--PEREQEYLDLLRRKQADGIILLDG 64 (267)
T ss_pred EEEEECCCCCcc----HHHHHHHHHHHHHHcCCeEEEecCCCC--hHHHHHHHHHHHHcCCCEEEEecC
Confidence 455555444322 122334455666777887766553211 110 011 47899999654
No 445
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=27.67 E-value=1.2e+02 Score=20.85 Aligned_cols=31 Identities=19% Similarity=0.135 Sum_probs=19.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWD 41 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 41 (126)
|.++||+|++.+... ...+...|...+.++.
T Consensus 1 m~~~~ilivdd~~~~----------~~~l~~~l~~~~~~v~ 31 (228)
T PRK11083 1 MQQPTILLVEDEQAI----------ADTLVYALQSEGFTVE 31 (228)
T ss_pred CCCCEEEEEeCCHHH----------HHHHHHHHHHCCCEEE
Confidence 788899999665432 2235566666666544
No 446
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=27.66 E-value=1e+02 Score=25.35 Aligned_cols=61 Identities=23% Similarity=0.255 Sum_probs=37.6
Q ss_pred CCCeEEEEEcCCCc--hHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC------------CCCCCCcCEEEEc
Q 033165 2 GGKKFAVLLCAEDS--EYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD------------DDDFGSYDGYVIT 65 (126)
Q Consensus 2 ~~~ki~Il~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~------------~~~~~~~d~iii~ 65 (126)
+..||+||-.--.. ++++++ =.--+.+.+++.|.++.+++++-.++|. .+.+.++|+||+.
T Consensus 321 ~~skIlvlGlayK~dvdD~ReS---Pa~~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~ 395 (436)
T COG0677 321 SGSKILVLGLAYKGDVDDLRES---PALDIIELLEEWGGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADAVVIA 395 (436)
T ss_pred cCceEEEEEeeecCCCcccccC---chHHHHHHHHHhCCeEEEECCCCCcchhhhhccccchhhHHHHhccCCEEEEE
Confidence 44578887543222 223322 2223668888899999999887554341 1235689999997
No 447
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=27.62 E-value=2e+02 Score=19.38 Aligned_cols=42 Identities=12% Similarity=0.083 Sum_probs=25.9
Q ss_pred CcCEEEEcCCCCCCCCCc---hHHHHHHHHHHHHHhc--CCcEEEEc
Q 033165 58 SYDGYVITGSCNDAHGND---VWICKLIALLKQLDSL--RKKVLGIC 99 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~---~~~~~~~~~i~~~~~~--~~PvlGIC 99 (126)
.+|.++|..|..+..... .+...+.++++.+.+. +.+++-++
T Consensus 50 ~p~~vvi~~G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~ 96 (171)
T cd04502 50 QPRRVVLYAGDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAIIS 96 (171)
T ss_pred CCCEEEEEEecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEE
Confidence 688888888766653221 3555566666666543 56666665
No 448
>KOG0876 consensus Manganese superoxide dismutase [Inorganic ion transport and metabolism]
Probab=27.57 E-value=1.7e+02 Score=22.08 Aligned_cols=17 Identities=6% Similarity=0.153 Sum_probs=12.1
Q ss_pred HHHHhhCCHHHHHHHHH
Q 033165 17 YVKKKYGGYFGVFVRML 33 (126)
Q Consensus 17 ~~~~~~~~~~~~~~~~l 33 (126)
.+.+++||+.....++-
T Consensus 127 aI~~~FGS~ee~~k~~~ 143 (234)
T KOG0876|consen 127 AIDSSFGSLEEFVKELN 143 (234)
T ss_pred HHHHhhcCHHHHHHHHH
Confidence 46678899888766544
No 449
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.37 E-value=3.2e+02 Score=21.78 Aligned_cols=34 Identities=24% Similarity=0.178 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
|...||+|+-.+..- .-+.++|.+.|.++..++.
T Consensus 1 ~~~~~i~iiGlG~~G-----------~slA~~l~~~G~~V~g~D~ 34 (418)
T PRK00683 1 MGLQRVVVLGLGVTG-----------KSIARFLAQKGVYVIGVDK 34 (418)
T ss_pred CCCCeEEEEEECHHH-----------HHHHHHHHHCCCEEEEEeC
Confidence 777899999877642 2366778888887766553
No 450
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.23 E-value=2.4e+02 Score=21.01 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=20.4
Q ss_pred CcCEEEEcCCCCCCCCCchHH-HHHHHHHHHHHhcC-CcEEEE
Q 033165 58 SYDGYVITGSCNDAHGNDVWI-CKLIALLKQLDSLR-KKVLGI 98 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~-~~~~~~i~~~~~~~-~PvlGI 98 (126)
++|.|+++|=-.+......+. ..+.++++++.+.+ +|++-|
T Consensus 39 ~~D~lli~GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i 81 (253)
T TIGR00619 39 QIDALLVAGDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVI 81 (253)
T ss_pred CCCEEEECCccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 467777777543322211222 22345555554444 677665
No 451
>PRK13435 response regulator; Provisional
Probab=27.19 E-value=58 Score=21.19 Aligned_cols=30 Identities=10% Similarity=0.009 Sum_probs=18.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETW 40 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ 40 (126)
|.+++|+|+..+... ...+.+.++..+..+
T Consensus 3 ~~~~~iliid~~~~~----------~~~l~~~l~~~~~~~ 32 (145)
T PRK13435 3 LRQLKVLIVEDEALI----------ALELEKLVEEAGHEV 32 (145)
T ss_pred cccceEEEEcCcHHH----------HHHHHHHHHhcCCeE
Confidence 667888888665542 223566666656543
No 452
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=27.05 E-value=86 Score=23.39 Aligned_cols=20 Identities=15% Similarity=-0.056 Sum_probs=15.8
Q ss_pred cCCcEEEEchHHHHHHHHhCC
Q 033165 91 LRKKVLGICFGHQVRAITVFS 111 (126)
Q Consensus 91 ~~~PvlGIC~G~Q~la~~~Gg 111 (126)
.++|+.++|.|- .+.+.+|.
T Consensus 175 ~~~p~i~isMG~-~iSRi~~~ 194 (229)
T PRK01261 175 KYKPIVFIPMGR-EFLRIFSG 194 (229)
T ss_pred CCCCEEEEECCc-HHHHHHHH
Confidence 478999999998 77776543
No 453
>PF14511 RE_EcoO109I: Type II restriction endonuclease EcoO109I; PDB: 1WTD_A 1WTE_A.
Probab=26.96 E-value=50 Score=24.35 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=9.1
Q ss_pred cCCcEEEEchH
Q 033165 91 LRKKVLGICFG 101 (126)
Q Consensus 91 ~~~PvlGIC~G 101 (126)
...++.|+|+|
T Consensus 144 ~~~~v~G~~YG 154 (200)
T PF14511_consen 144 NIDAVNGCCYG 154 (200)
T ss_dssp -SEEEEEESSS
T ss_pred ccceeeEEEec
Confidence 36899999998
No 454
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=26.95 E-value=2.3e+02 Score=23.55 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=21.9
Q ss_pred HHHHHHHHh-cCCcEEEEchHHHHHHHHhCC
Q 033165 82 IALLKQLDS-LRKKVLGICFGHQVRAITVFS 111 (126)
Q Consensus 82 ~~~i~~~~~-~~~PvlGIC~G~Q~la~~~Gg 111 (126)
.+.++++.. +++-++|-|-|--+++.+++-
T Consensus 171 id~v~~itg~~~InliGyCvGGtl~~~ala~ 201 (445)
T COG3243 171 IDTVKDITGQKDINLIGYCVGGTLLAAALAL 201 (445)
T ss_pred HHHHHHHhCccccceeeEecchHHHHHHHHh
Confidence 344444443 679999999999988887754
No 455
>TIGR00070 hisG ATP phosphoribosyltransferase. Members of this family from B. subtilis, Aquifex aeolicus, and Synechocystis PCC6803 (and related taxa) lack the C-terminal third of the sequence. The sole homolog from Archaeoglobus fulgidus lacks the N-terminal 50 residues (as reported) and is otherwise atypical of the rest of the family. This model excludes the C-terminal extension.
Probab=26.90 E-value=1.4e+02 Score=21.47 Aligned_cols=38 Identities=18% Similarity=0.283 Sum_probs=26.7
Q ss_pred CHHHHHHHHHhhCCCeEEEEEccCC-CCCCCCCCCCcCEEE
Q 033165 24 GYFGVFVRMLAEEGETWDVFHVARG-EFPDDDDFGSYDGYV 63 (126)
Q Consensus 24 ~~~~~~~~~l~~~g~~~~~~~~~~~-~~p~~~~~~~~d~ii 63 (126)
.|+....++|.+.|.+++++.+.-. |+ .+ .+.-.|+|+
T Consensus 115 kyp~i~~~~f~~~Gi~v~ii~l~GsvE~-aP-~~GlaD~Iv 153 (182)
T TIGR00070 115 KYPNLARRYFEKKGIDVEIIKLNGSVEL-AP-LLGLADAIV 153 (182)
T ss_pred CCHHHHHHHHHHcCCeEEEEECcceeec-cc-CCCceeEEE
Confidence 4899899999999999999987622 22 11 245566664
No 456
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=26.79 E-value=32 Score=26.52 Aligned_cols=22 Identities=18% Similarity=-0.041 Sum_probs=19.5
Q ss_pred CcEEEEchHHHHHHHHhCCccc
Q 033165 93 KKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 93 ~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
+|+.|.|+|.-+++..||..+.
T Consensus 70 ~P~v~~~~G~~~v~liLgl~ig 91 (279)
T PF07271_consen 70 IPVVGGSAGLLAVALILGLAIG 91 (279)
T ss_pred eeeccchhhHHHHHHHHHHhhc
Confidence 7999999999999998887665
No 457
>COG0131 HisB Imidazoleglycerol-phosphate dehydratase [Amino acid transport and metabolism]
Probab=26.66 E-value=27 Score=25.53 Aligned_cols=17 Identities=24% Similarity=0.219 Sum_probs=12.9
Q ss_pred EEchHHHHHHHHhCCccc
Q 033165 97 GICFGHQVRAITVFSSHI 114 (126)
Q Consensus 97 GIC~G~Q~la~~~Gg~v~ 114 (126)
|||+| |.|.+++|.+-.
T Consensus 73 gIaLG-qAl~~AlGdk~G 89 (195)
T COG0131 73 GIALG-QALKEALGDKRG 89 (195)
T ss_pred HHHHH-HHHHHHhccccc
Confidence 68888 678899987643
No 458
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=26.46 E-value=2.1e+02 Score=22.66 Aligned_cols=101 Identities=20% Similarity=0.127 Sum_probs=52.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~~~~ 82 (126)
|||.|=-..++.-. |-..+...|++.|.++.+..-..+.....-+.-+++.+.+.+-..+..+.. .+..+..
T Consensus 1 MkIwiDi~~p~hvh-------fFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~~~~~Kl~~~~~R~~ 73 (335)
T PF04007_consen 1 MKIWIDITHPAHVH-------FFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGDSLYGKLLESIERQY 73 (335)
T ss_pred CeEEEECCCchHHH-------HHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 46666555444322 333466777888998876643322222111345788888876433322211 3344444
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHH---HHhCCc
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRA---ITVFSS 112 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la---~~~Gg~ 112 (126)
++++.+ ++..|=+.||.|---.+ ..+|-+
T Consensus 74 ~l~~~~-~~~~pDv~is~~s~~a~~va~~lgiP 105 (335)
T PF04007_consen 74 KLLKLI-KKFKPDVAISFGSPEAARVAFGLGIP 105 (335)
T ss_pred HHHHHH-HhhCCCEEEecCcHHHHHHHHHhCCC
Confidence 444443 34578777777654444 444544
No 459
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=26.40 E-value=2.3e+02 Score=23.41 Aligned_cols=59 Identities=12% Similarity=0.170 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC--CCeEEEEEccCCCCCC-CCCCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE--GETWDVFHVARGEFPD-DDDFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G 66 (126)
+.|++|+.....- +.+. -...+.+-+++. |.+++++++...+... ..++.++|+|++.-
T Consensus 251 ~~kv~IvY~S~~G-nTe~----mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGs 312 (479)
T PRK05452 251 EDRITIFYDTMSN-NTRM----MADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGS 312 (479)
T ss_pred cCcEEEEEECCcc-HHHH----HHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEEC
Confidence 4578887654331 1111 122344555544 5677888765322110 01234689776643
No 460
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=26.03 E-value=1.1e+02 Score=24.67 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=21.1
Q ss_pred chHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 75 DVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 75 ~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
..++++..+.|+.+.+.++++ ||+=+
T Consensus 79 d~~Ieny~~tirnLa~~GI~v--vCYNf 104 (362)
T COG1312 79 DRYIENYKQTIRNLARAGIKV--VCYNF 104 (362)
T ss_pred HHHHHHHHHHHHHHHhcCCcE--EEecc
Confidence 367888999999999899888 67644
No 461
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=25.79 E-value=1.6e+02 Score=21.64 Aligned_cols=33 Identities=18% Similarity=0.263 Sum_probs=18.1
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHh-cCCcEE
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDS-LRKKVL 96 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~-~~~Pvl 96 (126)
..|+++|.|+- +.. . .++.++++.+.+ .++|++
T Consensus 24 gtDaI~VGGS~-gvt--~---~~~~~~v~~ik~~~~lPvi 57 (205)
T TIGR01769 24 GTDAIMVGGSL-GIV--E---SNLDQTVKKIKKITNLPVI 57 (205)
T ss_pred CCCEEEEcCcC-CCC--H---HHHHHHHHHHHhhcCCCEE
Confidence 46999999883 221 1 233334444333 468876
No 462
>KOG3325 consensus Membrane coat complex Retromer, subunit VPS29/PEP11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.76 E-value=15 Score=26.15 Aligned_cols=13 Identities=46% Similarity=0.968 Sum_probs=10.3
Q ss_pred CCcEEEEchHHHH
Q 033165 92 RKKVLGICFGHQV 104 (126)
Q Consensus 92 ~~PvlGIC~G~Q~ 104 (126)
+.--+|.|.|||+
T Consensus 78 GqfkIG~chGhqV 90 (183)
T KOG3325|consen 78 GQFKIGLCHGHQV 90 (183)
T ss_pred ccEEEEeecCcEe
Confidence 4456899999995
No 463
>PLN02417 dihydrodipicolinate synthase
Probab=25.24 E-value=2.1e+02 Score=21.67 Aligned_cols=45 Identities=16% Similarity=0.059 Sum_probs=25.0
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
...+||++.|+...... +.....++.+...+....++|++.-+-.
T Consensus 34 ~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~ 79 (280)
T PLN02417 34 NGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGS 79 (280)
T ss_pred cCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCC
Confidence 46899999998654321 1112223334333444456898866654
No 464
>PRK10307 putative glycosyl transferase; Provisional
Probab=25.19 E-value=1.5e+02 Score=23.19 Aligned_cols=41 Identities=24% Similarity=0.251 Sum_probs=28.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|||+++-....++. ..-+.+...+.+.|.+.|.+++++...
T Consensus 1 mkIlii~~~~~P~~--~g~~~~~~~l~~~L~~~G~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPEL--TGIGKYTGEMAEWLAARGHEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCCc--cchhhhHHHHHHHHHHCCCeEEEEecC
Confidence 68999875433221 122356778889999999999999753
No 465
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=25.05 E-value=3.6e+02 Score=21.59 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=19.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
.+||+|+-.+..- .-..++|.+.|.++..+..
T Consensus 5 ~~~~~v~G~g~~G-----------~~~a~~l~~~g~~v~~~d~ 36 (445)
T PRK04308 5 NKKILVAGLGGTG-----------ISMIAYLRKNGAEVAAYDA 36 (445)
T ss_pred CCEEEEECCCHHH-----------HHHHHHHHHCCCEEEEEeC
Confidence 4678888665321 1135667777877766653
No 466
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=25.03 E-value=2e+02 Score=22.19 Aligned_cols=43 Identities=16% Similarity=0.170 Sum_probs=24.1
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcE-EEEc
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKV-LGIC 99 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~Pv-lGIC 99 (126)
...|||++.|+....+. ..+...++.+...+....++|+ .|++
T Consensus 37 ~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g 81 (299)
T COG0329 37 AGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVG 81 (299)
T ss_pred cCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecC
Confidence 36899999998654422 1122233445555555455764 4454
No 467
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=24.76 E-value=2.3e+02 Score=19.17 Aligned_cols=101 Identities=14% Similarity=0.031 Sum_probs=57.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHH-HHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVR-MLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~-~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
.|++|+++..+...- .. |.-.+.. .....|.++++|-.-++. ....-...+.+-.++. +.+.
T Consensus 3 ~~v~i~~t~G~~~~~-r~---ya~f~~A~~a~smg~dV~iF~t~dG~--~l~~K~~~ekik~~~~-----------~~l~ 65 (120)
T COG2044 3 DKVLIVVTSGPNNPE-RA---YAPFVMATAAASMGYDVTIFFTMDGV--TLVKKKVAEKIKHPNF-----------PPLE 65 (120)
T ss_pred ceEEEEEecCCCCHH-HH---HhHHHHHHHHHhCCCceEEEEEeccc--eeeeecchhhhcCCCC-----------CCHH
Confidence 478888887776432 22 3333332 334568898888654331 1001123444444444 2366
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCCccccc
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINASKIAGT 122 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~~~~g~ 122 (126)
++++++.+.|+.+.--=.+.+ +...-...+...-|+.|.
T Consensus 66 ~~~~~a~e~GVk~yvCe~s~~-~~~~~ed~l~egvkI~G~ 104 (120)
T COG2044 66 ELIKQAIEAGVKIYVCEQSLK-LRGIKEDDLVEGVKIVGA 104 (120)
T ss_pred HHHHHHHHcCCEEEEEcchhh-hcCcchhhhhhccEeccH
Confidence 788888888988775447777 444445555555566654
No 468
>cd06287 PBP1_LacI_like_8 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.76 E-value=2.8e+02 Score=20.23 Aligned_cols=39 Identities=13% Similarity=0.083 Sum_probs=23.5
Q ss_pred HHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 27 GVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
..+.+.+++.|..+.++...... ... .-...||+|+.+.
T Consensus 27 ~~i~~~~~~~gy~~~~~~~~~~~-~~l-~~~~vdgiIi~~~ 65 (269)
T cd06287 27 AAAAESALERGLALCLVPPHEAD-SPL-DALDIDGAILVEP 65 (269)
T ss_pred HHHHHHHHHCCCEEEEEeCCCch-hhh-hccCcCeEEEecC
Confidence 34556667788888776543111 111 1257999999754
No 469
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=24.74 E-value=2.5e+02 Score=22.88 Aligned_cols=68 Identities=15% Similarity=0.183 Sum_probs=37.8
Q ss_pred HHHHHHH----HhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCc
Q 033165 26 FGVFVRM----LAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKK 94 (126)
Q Consensus 26 ~~~~~~~----l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~P 94 (126)
+..+++. +.+.|..+++++....+... .+.+.+++++++.-.+.+. +..+-+..+...+..+.-.+++
T Consensus 260 T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~~~-~~~p~i~~~l~~v~~~~~~~k~ 332 (388)
T COG0426 260 TEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTING-GAHPPIQTALGYVLALAPKNKL 332 (388)
T ss_pred HHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcccC-CCCchHHHHHHHHHhccCcCce
Confidence 4444444 45578899999876543211 1346789999885443221 2234455555555555434455
No 470
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=24.71 E-value=1.6e+02 Score=20.13 Aligned_cols=34 Identities=21% Similarity=0.217 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 76 VWICKLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
.+...+.++++..-...+-++|.++|..+.....
T Consensus 64 ~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a 97 (251)
T TIGR02427 64 DLADDVLALLDHLGIERAVFCGLSLGGLIAQGLA 97 (251)
T ss_pred HHHHHHHHHHHHhCCCceEEEEeCchHHHHHHHH
Confidence 4455566666554323567889999988765543
No 471
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=24.44 E-value=1.9e+02 Score=22.77 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=24.2
Q ss_pred CCcCEEEEcCC-CCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 57 GSYDGYVITGS-CNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 57 ~~~d~iii~G~-~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
..++||||-|- ..+...+ ..+.+.|+++.++++||.-+
T Consensus 232 ~~~~GiVl~~~G~Gn~p~~----~~~~~~l~~~~~~Gi~VV~~ 270 (335)
T PRK09461 232 QPVKALILRSYGVGNAPQN----PALLQELKEASERGIVVVNL 270 (335)
T ss_pred CCCCEEEEccCCCCCCCCC----HHHHHHHHHHHHCCCEEEEe
Confidence 35899999752 2233221 23556677777889998765
No 472
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=24.43 E-value=2.2e+02 Score=20.71 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=32.2
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCCCCCcCEEEEcC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDDFGSYDGYVITG 66 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~~~~~d~iii~G 66 (126)
||+||-.....+ ...+.+.+++.|.++.++.+.+..+.. ......+|.++.--
T Consensus 1 ~~~~~~~~~~~~---------~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~ 56 (277)
T TIGR00768 1 KLAILYDRIRLD---------EKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRI 56 (277)
T ss_pred CEEEEEcCCCHH---------HHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEec
Confidence 577776654421 235778899999999888765321110 01245688877644
No 473
>COG1736 DPH2 Diphthamide synthase subunit DPH2 [Translation, ribosomal structure and biogenesis]
Probab=24.33 E-value=2.6e+02 Score=22.37 Aligned_cols=68 Identities=19% Similarity=0.283 Sum_probs=39.8
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~ 74 (126)
..++++|+..--.-....+ -...+.+.+.+.|.++-.+.+..-. |. ...++.+|..+++|-|--+.|+
T Consensus 236 ~a~~~giiv~tk~gQ~r~~----~~~~l~k~~~~~g~~~~li~~~~i~-p~~L~~f~~iD~~v~taCPRi~iDd 304 (347)
T COG1736 236 DAKSFGIIVSTKGGQRRLE----VARELVKLLKEAGKEVYLIVVDEIS-PDKLANFDDIDAFVNTACPRIPIDD 304 (347)
T ss_pred cCCeEEEEEecccccCcHH----HHHHHHHHHHHcCCceEEEEecCCC-HHHHhcccceeEEEEecCCCcccch
Confidence 3468888876554321111 1234666777788777665543211 21 2345678999999998755554
No 474
>PRK13584 hisG ATP phosphoribosyltransferase catalytic subunit; Provisional
Probab=24.28 E-value=1.7e+02 Score=21.63 Aligned_cols=23 Identities=9% Similarity=0.208 Sum_probs=20.7
Q ss_pred CHHHHHHHHHhhCCCeEEEEEcc
Q 033165 24 GYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 24 ~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
.|+..-.++|.+.|.+++++.++
T Consensus 111 kyp~it~~yf~~~Gi~~~ii~l~ 133 (204)
T PRK13584 111 SYVHTAETYFKSKGIDVELIKLN 133 (204)
T ss_pred CcHHHHHHHHHHcCCeEEEEECC
Confidence 68888999999999999999876
No 475
>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=24.22 E-value=1.6e+02 Score=21.27 Aligned_cols=33 Identities=15% Similarity=0.032 Sum_probs=18.6
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
...|+||+.+...+ ...+.++.+.++++|+.-+
T Consensus 59 ~~vDgiii~~~~~~---------~~~~~i~~~~~~gIpvV~~ 91 (274)
T cd06311 59 RKIDALVILPFESA---------PLTQPVAKAKKAGIFVVVV 91 (274)
T ss_pred cCCCEEEEeCCCch---------hhHHHHHHHHHCCCeEEEE
Confidence 46999999754211 1223344555567776543
No 476
>PRK01686 hisG ATP phosphoribosyltransferase catalytic subunit; Reviewed
Probab=24.12 E-value=1.7e+02 Score=21.70 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.5
Q ss_pred CHHHHHHHHHhhCCCeEEEEEcc
Q 033165 24 GYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 24 ~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
+|+..-.++|++.|.+++++.+.
T Consensus 121 kYp~it~~yf~~~gv~~~iv~l~ 143 (215)
T PRK01686 121 KYPNIARRYFAEKGEQVEIIKLY 143 (215)
T ss_pred CCHHHHHHHHHHcCCeEEEEECc
Confidence 68999999999999999998875
No 477
>PLN02535 glycolate oxidase
Probab=23.94 E-value=3.6e+02 Score=21.66 Aligned_cols=57 Identities=19% Similarity=0.145 Sum_probs=32.1
Q ss_pred CCcCEEEEcCCCCCCCCCchH-HHHHHHHHHHHHhcCCcEE---EEchHHHHH-HHHhCCccc
Q 033165 57 GSYDGYVITGSCNDAHGNDVW-ICKLIALLKQLDSLRKKVL---GICFGHQVR-AITVFSSHI 114 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~-~~~~~~~i~~~~~~~~Pvl---GIC~G~Q~l-a~~~Gg~v~ 114 (126)
...|+|+++|......+..+. +..+.+ +++.+..++|++ ||-.|..++ +.++|++..
T Consensus 243 ~GvD~I~vsn~GGr~~d~~~~t~~~L~e-v~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV 304 (364)
T PLN02535 243 VGVAGIIVSNHGARQLDYSPATISVLEE-VVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAV 304 (364)
T ss_pred cCCCEEEEeCCCcCCCCCChHHHHHHHH-HHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEE
Confidence 478999998654333232221 222222 222333468887 566788866 678888744
No 478
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=23.83 E-value=2.4e+02 Score=21.43 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=22.3
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEE-EEc
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVL-GIC 99 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~Pvl-GIC 99 (126)
...|||++.|+....+. +.+...++.+...+....++||+ |++
T Consensus 33 ~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~ 77 (289)
T cd00951 33 YGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG 77 (289)
T ss_pred cCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC
Confidence 36899999998654322 11112223333333334467865 454
No 479
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=23.79 E-value=66 Score=23.78 Aligned_cols=80 Identities=11% Similarity=0.001 Sum_probs=41.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc-CCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT-GSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~-G~~~~~~~~~~~~~~~~ 82 (126)
+||+|++-++. ....+...|+..|+++..+.-....+... .-. ||.|++= +-|. .+-.. +.
T Consensus 1 ~~ILiveDd~~----------i~~~l~~~L~~~g~~v~~~~~~~~a~~~~-~~~-~dlviLD~~lP~--~dG~~----~~ 62 (229)
T COG0745 1 MRILLVEDDPE----------LAELLKEYLEEEGYEVDVAADGEEALEAA-REQ-PDLVLLDLMLPD--LDGLE----LC 62 (229)
T ss_pred CeEEEEcCCHH----------HHHHHHHHHHHCCCEEEEECCHHHHHHHH-hcC-CCEEEEECCCCC--CCHHH----HH
Confidence 47888865443 23467788999998887765211101111 113 8888873 2221 11111 22
Q ss_pred HHHHHHHhcCCcEEEEchH
Q 033165 83 ALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G 101 (126)
..+++......||+-+..-
T Consensus 63 ~~iR~~~~~~~PIi~Lta~ 81 (229)
T COG0745 63 RRLRAKKGSGPPIIVLTAR 81 (229)
T ss_pred HHHHhhcCCCCcEEEEECC
Confidence 3344322245777777644
No 480
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=23.75 E-value=2.5e+02 Score=19.36 Aligned_cols=77 Identities=14% Similarity=0.088 Sum_probs=42.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
.||.++-.+...... ..+...|...|..+..+. +.. ...+..-|.+|+..-.... ....+
T Consensus 34 ~~I~i~G~G~S~~~A--------~~~~~~l~~~g~~~~~~~---~~~--~~~~~~~D~vI~iS~sG~t-------~~~i~ 93 (179)
T cd05005 34 KRIFVYGAGRSGLVA--------KAFAMRLMHLGLNVYVVG---ETT--TPAIGPGDLLIAISGSGET-------SSVVN 93 (179)
T ss_pred CeEEEEecChhHHHH--------HHHHHHHHhCCCeEEEeC---CCC--CCCCCCCCEEEEEcCCCCc-------HHHHH
Confidence 577777776653221 124444555676666543 111 1134555655554322111 34556
Q ss_pred HHHHHHhcCCcEEEEch
Q 033165 84 LLKQLDSLRKKVLGICF 100 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~ 100 (126)
.++.+.+.+.|+++|+-
T Consensus 94 ~~~~ak~~g~~iI~IT~ 110 (179)
T cd05005 94 AAEKAKKAGAKVVLITS 110 (179)
T ss_pred HHHHHHHCCCeEEEEEC
Confidence 67777778999999984
No 481
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=23.74 E-value=2.1e+02 Score=23.53 Aligned_cols=18 Identities=17% Similarity=0.204 Sum_probs=13.5
Q ss_pred CCcEEEEchHHHHHHHHh
Q 033165 92 RKKVLGICFGHQVRAITV 109 (126)
Q Consensus 92 ~~PvlGIC~G~Q~la~~~ 109 (126)
...++|+|.|.+.+.+.+
T Consensus 159 ~~kviGlC~~~~~~~~~l 176 (437)
T cd05298 159 NARILNICDMPIAIMDSM 176 (437)
T ss_pred CCCEEEECCcHHHHHHHH
Confidence 578999999888765433
No 482
>PRK05839 hypothetical protein; Provisional
Probab=23.69 E-value=3.5e+02 Score=21.00 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=32.6
Q ss_pred HHHhhCCCeEEEEEccC-CCC-CCC--CCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcE
Q 033165 31 RMLAEEGETWDVFHVAR-GEF-PDD--DDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKV 95 (126)
Q Consensus 31 ~~l~~~g~~~~~~~~~~-~~~-p~~--~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pv 95 (126)
..++..|.++..+.... +.+ ++. ..+.+.+.++++ .|.++....--..++.++++.+.+.++++
T Consensus 124 ~~~~~~g~~v~~v~~~~~~~~~~d~~~~~~~~~k~v~i~-nP~NPTG~~~s~~~l~~i~~~~~~~~~~i 191 (374)
T PRK05839 124 GAAIASRAKVLLMPLTKENDFTPSLNEKELQEVDLVILN-SPNNPTGRTLSLEELIEWVKLALKHDFIL 191 (374)
T ss_pred HHHHhcCCEEEEeecccccCCcCCcchhhhccccEEEEe-CCCCCcCcccCHHHHHHHHHHHHHcCCEE
Confidence 34456677777666532 112 111 123467788887 78777654311233444555444445544
No 483
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=23.67 E-value=74 Score=23.24 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=20.9
Q ss_pred cCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 59 YDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 59 ~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
+|.||+..... + ...++++...++|+.|+|
T Consensus 144 P~~vii~~~~~----~-------~~~i~Ea~~l~IP~i~i~ 173 (211)
T PF00318_consen 144 PDLVIILDPNK----N-------KNAIREANKLNIPTIAIV 173 (211)
T ss_dssp BSEEEESSTTT----T-------HHHHHHHHHTTS-EEEEE
T ss_pred CcEEEEecccc----c-------chhHHHHHhcCceEEEee
Confidence 78888885522 1 234777878899999998
No 484
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=23.66 E-value=2.2e+02 Score=24.66 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCC---------C-CCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDD---------F-GSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~---------~-~~~d~iii~G~ 67 (126)
.||+|+......+ .+.+.|++.|.+++.+.+|....|.+.. + .++|+++++-+
T Consensus 140 ~rVLi~rG~~gr~-----------~L~~~L~~~Ga~V~~v~vY~~~~~~~~~~~~~~~~~~l~~~idav~fTS~ 202 (656)
T PRK06975 140 KRVLIVRGDGGRE-----------WLAERLREAGAEVELVEAYRRVVPEPSIGAWERVHALLSGAPHAWLLTSS 202 (656)
T ss_pred CEEEEEcCCCCcH-----------HHHHHHHHCCCEEEEEeEEEeeCCCcchhHHHHHHHHHhCCCcEEEECCH
Confidence 5788876655433 4677888999998877766422221100 0 24788887754
No 485
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=23.65 E-value=1.2e+02 Score=22.77 Aligned_cols=36 Identities=17% Similarity=0.120 Sum_probs=24.1
Q ss_pred CEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 60 DGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 60 d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
--++|||-|+-+ .|.....+.+.+.+..+.+|+||-
T Consensus 4 li~~IPGNPGlv----~fY~~Fl~~L~~~l~~~~~i~~is 39 (266)
T PF10230_consen 4 LIVFIPGNPGLV----EFYEEFLSALYEKLNPQFEILGIS 39 (266)
T ss_pred EEEEECCCCChH----HHHHHHHHHHHHhCCCCCeeEEec
Confidence 357889887643 355555555655555678999986
No 486
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=23.35 E-value=3.3e+02 Score=20.47 Aligned_cols=59 Identities=14% Similarity=0.193 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----C--CCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----D--DFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~--~~~~~d~iii~G~ 67 (126)
..|+++......+.. .....-+.+.+++.|.++.++....+ .... + .-...||||+.+.
T Consensus 60 ~~i~vi~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~~~~~i~~l~~~~vdgiii~~~ 124 (341)
T PRK10703 60 KSIGLLATSSEAPYF----AEIIEAVEKNCYQKGYTLILCNAWNN-LEKQRAYLSMLAQKRVDGLLVMCS 124 (341)
T ss_pred CeEEEEeCCCCCchH----HHHHHHHHHHHHHCCCEEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEEecC
Confidence 467888765443221 11222344566677877766643211 1000 0 1147899999875
No 487
>PRK09548 PTS system ascorbate-specific transporter subunits IICB; Provisional
Probab=23.31 E-value=3.6e+02 Score=23.39 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=23.1
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
.+.+.+++.|.+.++.+..-.+.+. ..+++|.++.+
T Consensus 526 kIkk~Lke~GI~veV~~~~Vsev~s--~~~~aDIIVtt 561 (602)
T PRK09548 526 KIKKYLDKRGIPIIMDSCAVNDYKG--KLETIDIIVCS 561 (602)
T ss_pred HHHHHHHHcCCCeEEEEechHhCcc--cCCCCCEEEEc
Confidence 4778899999987766544334443 34568855554
No 488
>PRK13598 hisB imidazoleglycerol-phosphate dehydratase; Provisional
Probab=23.29 E-value=45 Score=24.45 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=12.6
Q ss_pred EEEchHHHHHHHHhCCcc
Q 033165 96 LGICFGHQVRAITVFSSH 113 (126)
Q Consensus 96 lGIC~G~Q~la~~~Gg~v 113 (126)
.|||+| |.|.+++|.+-
T Consensus 71 vgI~LG-~al~~Algdk~ 87 (193)
T PRK13598 71 VAITLG-LAIKEALGDKR 87 (193)
T ss_pred hhhhHH-HHHHHHhcCcc
Confidence 578888 56788888763
No 489
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=23.28 E-value=2.7e+02 Score=19.53 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=21.5
Q ss_pred HHHHHHHhcCCcE--EEEchH---HHHHHHHhCCccccC
Q 033165 83 ALLKQLDSLRKKV--LGICFG---HQVRAITVFSSHINA 116 (126)
Q Consensus 83 ~~i~~~~~~~~Pv--lGIC~G---~Q~la~~~Gg~v~~~ 116 (126)
++.+.+.+.++++ +|+|-+ .|-||++-||+....
T Consensus 127 ~~~~~l~~~~I~v~~IgiG~~~~~L~~ia~~tgG~~~~~ 165 (183)
T cd01453 127 ETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKVI 165 (183)
T ss_pred HHHHHHHHcCcEEEEEEechHHHHHHHHHHHhCCeeEee
Confidence 3455555567666 566544 556788889987653
No 490
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=23.27 E-value=3.5e+02 Score=20.73 Aligned_cols=82 Identities=13% Similarity=0.050 Sum_probs=41.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCCC----CCC--CCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFPD----DDD--FGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p~----~~~--~~~~d~iii~G~~~~~~~~~ 75 (126)
..+|+++..+..++.. .....-+.+.+++.|.++.+..... .+... .+. -.++||||+.+... +
T Consensus 46 t~~Igvv~p~~~~~f~----~~~~~gi~~aa~~~G~~l~i~~~~~~~~~~~q~~~i~~l~~~~vdgIIl~~~~~---~-- 116 (343)
T PRK10936 46 AWKLCALYPHLKDSYW----LSVNYGMVEEAKRLGVDLKVLEAGGYYNLAKQQQQLEQCVAWGADAILLGAVTP---D-- 116 (343)
T ss_pred CeEEEEEecCCCchHH----HHHHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh---H--
Confidence 3578888765443321 1233345566677788887775421 11000 000 14689999975321 1
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
.+.+.+ ++.+.++|++-+
T Consensus 117 ----~~~~~l-~~~~~giPvV~~ 134 (343)
T PRK10936 117 ----GLNPDL-ELQAANIPVIAL 134 (343)
T ss_pred ----HhHHHH-HHHHCCCCEEEe
Confidence 112223 444568887643
No 491
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=23.26 E-value=2.4e+02 Score=19.36 Aligned_cols=43 Identities=19% Similarity=0.140 Sum_probs=24.4
Q ss_pred CCcCEEEEcCCCCCCCC---C--------chHHHH----HHHHHHHHHhcCCcEEEEc
Q 033165 57 GSYDGYVITGSCNDAHG---N--------DVWICK----LIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~---~--------~~~~~~----~~~~i~~~~~~~~PvlGIC 99 (126)
.++|.++|..|..+... . ..|... +..+++.+.+.+.+++-++
T Consensus 58 ~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~ 115 (200)
T cd01829 58 EKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVG 115 (200)
T ss_pred CCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 47899999976654321 1 223433 3445555444567776654
No 492
>TIGR02826 RNR_activ_nrdG3 anaerobic ribonucleoside-triphosphate reductase activating protein. Members of this family represent a set of proteins related to, yet architecturally different from, the activating protein for the glycine radical-containing, oxygen-sensitive ribonucleoside-triphosphate reductase (RNR) as described in model TIGR02491. Members of this family are found paired with members of a similarly divergent set of anaerobic ribonucleoside-triphosphate reductases. Identification of this protein as an RNR activitating protein is partly from pairing with a candidate RNR. It is further supported by our finding that upstream of these operons are examples of a conserved regulatory element (described Rodionov and Gelfand) that is found in nearly all bacteria and that occurs specifically upstream of operons for all three classes of RNR genes.
Probab=23.08 E-value=1.9e+02 Score=19.85 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=19.5
Q ss_pred cCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcE
Q 033165 59 YDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKV 95 (126)
Q Consensus 59 ~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pv 95 (126)
.++|.++||. . .. +.+.++++.+.+.+.++
T Consensus 62 ~~gVt~SGGE--l--~~---~~l~~ll~~lk~~Gl~i 91 (147)
T TIGR02826 62 ISCVLFLGGE--W--NR---EALLSLLKIFKEKGLKT 91 (147)
T ss_pred CCEEEEechh--c--CH---HHHHHHHHHHHHCCCCE
Confidence 4799999996 1 11 34556666666667665
No 493
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=23.07 E-value=20 Score=24.80 Aligned_cols=41 Identities=32% Similarity=0.413 Sum_probs=25.5
Q ss_pred HHHHHhhCCCeEEEEEccCC-----C--CCC---CCCCCCcCEEEEcCCCC
Q 033165 29 FVRMLAEEGETWDVFHVARG-----E--FPD---DDDFGSYDGYVITGSCN 69 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~-----~--~p~---~~~~~~~d~iii~G~~~ 69 (126)
+.+.+++.+.++.++....+ . ++. .+.++..|.++++|+..
T Consensus 23 ~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTl 73 (147)
T PF04016_consen 23 LVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTL 73 (147)
T ss_dssp CHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHC
T ss_pred HHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeee
Confidence 34566677889998876531 1 111 11357899999999964
No 494
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=22.99 E-value=95 Score=23.97 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=20.4
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
+.+-+++-++.++|++|.+.|.-+-|+..
T Consensus 3 il~~l~~~i~~~~pIig~gaGtGlsAk~a 31 (268)
T PF09370_consen 3 ILDRLRAQIKAGKPIIGAGAGTGLSAKCA 31 (268)
T ss_dssp HHHHHHHHHHTT--EEEEEESSHHHHHHH
T ss_pred HHHHHHHHHhCCCceEEEeeccchhhHHH
Confidence 44556777778999999999988877643
No 495
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=22.98 E-value=1.3e+02 Score=23.81 Aligned_cols=31 Identities=13% Similarity=0.026 Sum_probs=22.4
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
.+|.|||..-.. ....|+++.+.++|+.|+|
T Consensus 152 ~Pd~viv~d~~~-----------e~~AI~EA~kl~IPvIaiv 182 (326)
T PRK12311 152 LPDLLFVIDTNK-----------EDIAIQEAQRLGIPVAAIV 182 (326)
T ss_pred CCCEEEEeCCcc-----------chHHHHHHHHcCCCEEEEe
Confidence 578888885421 1234777878899999998
No 496
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=22.92 E-value=1.2e+02 Score=19.01 Aligned_cols=18 Identities=17% Similarity=0.381 Sum_probs=11.4
Q ss_pred HHHHHHHHHhcCCcEEEE
Q 033165 81 LIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGI 98 (126)
.++.+.-+.+.++|++||
T Consensus 42 v~r~~~~~~~~~vpilGv 59 (81)
T PF10609_consen 42 VRRAIDMFRKLNVPILGV 59 (81)
T ss_dssp HHHHHHHHHCTT-EEEEE
T ss_pred HHHHHHHHHhcCCCcEEE
Confidence 444455555679999997
No 497
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=22.87 E-value=1.1e+02 Score=20.53 Aligned_cols=9 Identities=44% Similarity=0.604 Sum_probs=5.4
Q ss_pred cCEEEEcCC
Q 033165 59 YDGYVITGS 67 (126)
Q Consensus 59 ~d~iii~G~ 67 (126)
+|.||+.|+
T Consensus 2 aD~ivVlG~ 10 (155)
T PF02698_consen 2 ADAIVVLGS 10 (155)
T ss_dssp -SEEEEES-
T ss_pred CcEEEECCc
Confidence 577777774
No 498
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=22.80 E-value=3.8e+02 Score=21.09 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=19.2
Q ss_pred cCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 65 TGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 65 ~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
.|++.++.+ .|....++..++..-..+|..++=.|
T Consensus 135 ~Gs~h~Vt~--~~lAa~~e~~~~~~p~~rq~vAVlVG 169 (329)
T COG3660 135 NGSPHNVTS--QRLAALREAFKHLLPLPRQRVAVLVG 169 (329)
T ss_pred cCCCCcccH--HHhhhhHHHHHhhCCCCCceEEEEec
Confidence 455555432 45555666666655445666665443
No 499
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=22.77 E-value=2.3e+02 Score=24.37 Aligned_cols=32 Identities=19% Similarity=0.115 Sum_probs=23.7
Q ss_pred HHHHHhcCCcEEEEchH------HHHHHHHhCCccccC
Q 033165 85 LKQLDSLRKKVLGICFG------HQVRAITVFSSHINA 116 (126)
Q Consensus 85 i~~~~~~~~PvlGIC~G------~Q~la~~~Gg~v~~~ 116 (126)
+.++.+.--|--|.|-| ||.|++++|-.+-.+
T Consensus 188 ~~~~E~~acps~GsC~~mgTAnTm~~l~EaLGlsLPgs 225 (575)
T COG0129 188 LLEIERSACPSPGSCSGMGTANTMNCLAEALGLSLPGS 225 (575)
T ss_pred HHHHHHhcCCCCCcccccccHhHHHHHHHHHcCCCCCC
Confidence 33444456899999976 699999999876543
No 500
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=22.68 E-value=3.2e+02 Score=20.19 Aligned_cols=89 Identities=12% Similarity=0.015 Sum_probs=45.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHH----hhCCCeEEEEEccCCCCCCCC------------CCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRML----AEEGETWDVFHVARGEFPDDD------------DFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~~~~~~~~~~~~p~~~------------~~~~~d~iii~G 66 (126)
++||++|-..... +||+..+.+++ ...+.+++++.+..-.++..+ .+...|++|+.=
T Consensus 26 ~~kI~~I~GSlR~-------~S~n~~la~~~~~~~~~~g~~v~~idl~~lPl~~~d~~~~p~v~~l~~~v~~ADgvii~T 98 (219)
T TIGR02690 26 IPRILLLYGSLRE-------RSYSRLLAEEAARLLGCEGRETRIFDPPGLPLPDAAHADHPKVRELRQLSEWSEGQVWCS 98 (219)
T ss_pred CCEEEEEECCCCC-------cchHHHHHHHHHHHHhhcCCEEEEeCcccCCCCCcCcccCHHHHHHHHHHHhCCEEEEeC
Confidence 4688888665543 46666565554 335788888876421111110 123688988863
Q ss_pred CCCCCCCCchHHHHHHHHHHHHH-----hcCCcEEEEc
Q 033165 67 SCNDAHGNDVWICKLIALLKQLD-----SLRKKVLGIC 99 (126)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~~~~-----~~~~PvlGIC 99 (126)
-.++- .-..-+.+..+|+-.-. -.+||+.=++
T Consensus 99 PEYn~-sipg~LKNaiDwls~~~~~~~~~~~Kpvaivg 135 (219)
T TIGR02690 99 PERHG-AITGSQKDQIDWIPLSVGPVRPTQGKTLAVMQ 135 (219)
T ss_pred Ccccc-CcCHHHHHHHHhcccCcccccccCCCcEEEEE
Confidence 32221 11123444555554321 1467765443
Done!