Query 033165
Match_columns 126
No_of_seqs 189 out of 1458
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 17:28:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033165.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033165hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m3p_A Glutamine amido transfe 99.9 1.8E-24 6.1E-29 161.6 11.5 111 1-122 1-113 (250)
2 3l7n_A Putative uncharacterize 99.9 1.7E-22 5.8E-27 149.2 10.3 108 4-122 1-115 (236)
3 1o1y_A Conserved hypothetical 99.8 9.4E-21 3.2E-25 140.3 11.3 108 4-122 13-125 (239)
4 3r75_A Anthranilate/para-amino 99.8 2.9E-19 1E-23 148.2 11.8 99 4-117 447-546 (645)
5 2h2w_A Homoserine O-succinyltr 99.8 3.6E-19 1.2E-23 136.6 9.2 113 3-122 47-179 (312)
6 2vdj_A Homoserine O-succinyltr 99.8 3.7E-19 1.3E-23 136.0 8.4 114 3-123 35-168 (301)
7 1qdl_B Protein (anthranilate s 99.8 3.9E-19 1.3E-23 127.6 7.4 95 6-117 4-102 (195)
8 2a9v_A GMP synthase; structura 99.8 4.1E-19 1.4E-23 129.3 6.7 100 3-122 13-116 (212)
9 1wl8_A GMP synthase [glutamine 99.7 2.4E-18 8.3E-23 122.6 7.4 98 6-122 3-103 (189)
10 3uow_A GMP synthetase; structu 99.7 1.2E-17 4.1E-22 136.6 9.9 104 3-122 7-114 (556)
11 2nv0_A Glutamine amidotransfer 99.7 1.2E-18 4.2E-23 124.6 2.7 93 3-113 1-93 (196)
12 1q7r_A Predicted amidotransfer 99.7 8.4E-19 2.9E-23 128.0 1.8 95 1-113 21-115 (219)
13 1i1q_B Anthranilate synthase c 99.7 1.2E-17 4E-22 119.5 7.6 94 4-116 1-100 (192)
14 3tqi_A GMP synthase [glutamine 99.7 1.1E-17 3.7E-22 136.0 8.2 100 3-122 10-113 (527)
15 4gud_A Imidazole glycerol phos 99.7 2.1E-18 7.2E-23 124.6 1.5 96 1-116 1-96 (211)
16 1a9x_B Carbamoyl phosphate syn 99.7 7.8E-17 2.7E-21 126.5 9.4 96 4-117 191-286 (379)
17 2ywj_A Glutamine amidotransfer 99.7 1E-17 3.5E-22 118.9 3.9 90 4-114 1-90 (186)
18 1gpm_A GMP synthetase, XMP ami 99.7 2.3E-17 7.9E-22 134.0 6.1 102 1-122 5-110 (525)
19 2w7t_A CTP synthetase, putativ 99.7 1.7E-17 5.8E-22 125.0 4.8 103 4-114 9-118 (273)
20 2vpi_A GMP synthase; guanine m 99.7 9.1E-18 3.1E-22 122.8 1.5 93 4-116 25-120 (218)
21 2abw_A PDX2 protein, glutamina 99.7 9.6E-18 3.3E-22 122.6 1.4 96 1-114 1-102 (227)
22 3fij_A LIN1909 protein; 11172J 99.6 1E-16 3.4E-21 119.4 5.5 88 28-116 32-132 (254)
23 3d54_D Phosphoribosylformylgly 99.6 2.4E-16 8.2E-21 113.6 7.3 99 3-117 2-106 (213)
24 2ywd_A Glutamine amidotransfer 99.6 6.4E-17 2.2E-21 114.9 2.6 91 3-111 2-93 (191)
25 2ywb_A GMP synthase [glutamine 99.6 3.5E-16 1.2E-20 126.5 5.5 97 6-122 2-102 (503)
26 1ka9_H Imidazole glycerol phos 99.6 3.2E-16 1.1E-20 112.6 4.2 89 4-110 3-96 (200)
27 2iss_D Glutamine amidotransfer 99.6 1.4E-16 4.6E-21 115.3 2.3 92 3-112 20-111 (208)
28 1gpw_B Amidotransferase HISH; 99.6 6.1E-16 2.1E-20 110.9 5.4 88 4-110 1-95 (201)
29 1l9x_A Gamma-glutamyl hydrolas 99.6 9.2E-16 3.1E-20 117.6 4.6 113 1-115 28-147 (315)
30 2vxo_A GMP synthase [glutamine 99.6 5.1E-16 1.7E-20 129.7 2.9 100 3-122 29-132 (697)
31 3nva_A CTP synthase; rossman f 99.5 1.5E-14 5.2E-19 117.1 8.7 103 4-114 294-401 (535)
32 2v4u_A CTP synthase 2; pyrimid 99.5 6.5E-15 2.2E-19 111.7 5.1 54 56-114 88-141 (289)
33 1vco_A CTP synthetase; tetrame 99.5 1E-14 3.6E-19 118.9 6.4 94 17-115 311-407 (550)
34 1s1m_A CTP synthase; CTP synth 99.5 2.6E-14 8.8E-19 116.5 4.8 93 18-115 301-395 (545)
35 1jvn_A Glutamine, bifunctional 99.5 6.3E-15 2.1E-19 120.5 0.4 93 1-109 2-96 (555)
36 1oi4_A Hypothetical protein YH 99.1 4.3E-10 1.5E-14 80.1 8.1 97 3-108 23-134 (193)
37 3l4e_A Uncharacterized peptida 99.0 5.4E-11 1.9E-15 86.2 1.9 100 3-108 27-129 (206)
38 2rk3_A Protein DJ-1; parkinson 99.0 6.3E-10 2.2E-14 79.2 6.4 100 1-108 1-115 (197)
39 2vrn_A Protease I, DR1199; cys 99.0 6.3E-10 2.1E-14 78.6 5.2 100 1-108 7-124 (190)
40 3ugj_A Phosphoribosylformylgly 99.0 1.6E-09 5.6E-14 95.5 8.8 95 3-108 1047-1152(1303)
41 1vhq_A Enhancing lycopene bios 99.0 2.8E-09 9.6E-14 77.9 8.7 104 1-111 4-153 (232)
42 1fy2_A Aspartyl dipeptidase; s 99.0 8.7E-11 3E-15 86.2 0.5 98 3-109 31-130 (229)
43 3efe_A THIJ/PFPI family protei 98.9 7.3E-09 2.5E-13 74.8 9.6 98 1-108 3-121 (212)
44 3f5d_A Protein YDEA; unknow pr 98.9 1.4E-08 4.8E-13 73.2 10.0 97 1-108 1-109 (206)
45 3l18_A Intracellular protease 98.9 3.5E-09 1.2E-13 73.4 6.1 97 3-108 2-111 (168)
46 2ab0_A YAJL; DJ-1/THIJ superfa 98.8 5.3E-09 1.8E-13 75.0 6.3 98 3-108 2-116 (205)
47 3kkl_A Probable chaperone prot 98.8 1.6E-08 5.5E-13 74.8 7.3 105 1-108 1-147 (244)
48 1rw7_A YDR533CP; alpha-beta sa 98.8 7.6E-09 2.6E-13 76.1 4.9 106 1-108 1-147 (243)
49 4e08_A DJ-1 beta; flavodoxin-l 98.7 3.3E-08 1.1E-12 69.9 8.0 97 4-108 6-116 (190)
50 4hcj_A THIJ/PFPI domain protei 98.7 9.8E-09 3.3E-13 72.6 5.1 76 31-108 29-117 (177)
51 3gra_A Transcriptional regulat 98.7 7.8E-08 2.7E-12 68.9 8.5 97 1-108 3-117 (202)
52 3l3b_A ES1 family protein; ssg 98.7 9.6E-08 3.3E-12 70.6 8.6 100 3-109 23-168 (242)
53 3er6_A Putative transcriptiona 98.7 3E-08 1E-12 71.4 5.7 101 1-108 6-124 (209)
54 2fex_A Conserved hypothetical 98.6 5.1E-08 1.7E-12 68.8 6.4 96 3-108 1-110 (188)
55 3cne_A Putative protease I; st 98.6 1.2E-07 4.1E-12 66.0 7.8 97 4-108 3-120 (175)
56 3ej6_A Catalase-3; heme, hydro 98.6 3.4E-07 1.2E-11 76.3 10.6 99 3-108 537-646 (688)
57 1u9c_A APC35852; structural ge 98.6 6.6E-08 2.2E-12 69.8 5.6 98 4-108 6-138 (224)
58 3n7t_A Macrophage binding prot 98.6 9.4E-08 3.2E-12 70.8 5.8 104 3-108 9-154 (247)
59 3uk7_A Class I glutamine amido 98.5 1.6E-07 5.6E-12 73.2 6.6 98 2-108 11-137 (396)
60 2iuf_A Catalase; oxidoreductas 98.4 7.3E-07 2.5E-11 74.4 8.9 101 1-108 527-648 (688)
61 1sy7_A Catalase 1; heme oxidat 98.4 4E-07 1.4E-11 76.3 7.2 102 1-110 532-646 (715)
62 3noq_A THIJ/PFPI family protei 98.4 7.8E-07 2.7E-11 65.0 7.6 97 3-108 5-113 (231)
63 3ttv_A Catalase HPII; heme ori 98.4 6E-07 2E-11 75.4 7.7 96 3-108 600-708 (753)
64 3ot1_A 4-methyl-5(B-hydroxyeth 98.4 1.9E-07 6.4E-12 67.1 4.1 98 3-108 9-121 (208)
65 3uk7_A Class I glutamine amido 98.4 5.9E-07 2E-11 70.1 7.0 98 2-108 204-330 (396)
66 3fse_A Two-domain protein cont 98.4 9.8E-07 3.4E-11 68.8 7.9 97 3-108 10-121 (365)
67 3mgk_A Intracellular protease/ 98.3 7.4E-07 2.5E-11 64.2 5.2 99 1-108 1-113 (211)
68 1n57_A Chaperone HSP31, protei 98.3 2.3E-06 7.8E-11 64.6 8.1 79 30-109 82-195 (291)
69 3ewn_A THIJ/PFPI family protei 98.2 4.9E-06 1.7E-10 61.7 7.9 96 4-108 24-133 (253)
70 4gdh_A DJ-1, uncharacterized p 98.2 2.1E-06 7.2E-11 61.1 5.6 98 2-108 3-122 (194)
71 3bhn_A THIJ/PFPI domain protei 97.7 2.4E-05 8.4E-10 57.3 3.7 96 2-108 19-128 (236)
72 3en0_A Cyanophycinase; serine 97.4 3.5E-05 1.2E-09 58.3 1.2 97 4-108 57-161 (291)
73 2a5l_A Trp repressor binding p 95.6 0.036 1.2E-06 38.2 6.5 42 1-47 3-44 (200)
74 1u0t_A Inorganic polyphosphate 95.5 0.066 2.3E-06 40.2 8.1 86 1-101 1-108 (307)
75 2zki_A 199AA long hypothetical 95.0 0.033 1.1E-06 38.5 4.8 41 1-47 1-42 (199)
76 3rht_A (gatase1)-like protein; 95.0 0.065 2.2E-06 39.7 6.5 81 3-98 4-85 (259)
77 3pzy_A MOG; ssgcid, seattle st 94.3 0.0076 2.6E-07 41.7 0.0 69 1-71 5-79 (164)
78 1di6_A MOGA, molybdenum cofact 93.9 0.034 1.2E-06 39.5 2.7 73 1-74 1-82 (195)
79 2r47_A Uncharacterized protein 93.9 0.019 6.6E-07 39.5 1.3 43 57-100 83-125 (157)
80 4e5v_A Putative THUA-like prot 93.6 1.4 4.9E-05 32.6 11.4 87 3-102 4-96 (281)
81 3f6r_A Flavodoxin; FMN binding 93.5 0.24 8.3E-06 32.4 6.3 57 3-67 1-58 (148)
82 2gk3_A Putative cytoplasmic pr 93.3 0.02 6.8E-07 42.0 0.7 71 28-98 44-124 (256)
83 2i2c_A Probable inorganic poly 93.3 0.69 2.4E-05 34.0 9.1 68 4-101 1-70 (272)
84 2qv7_A Diacylglycerol kinase D 92.6 0.22 7.6E-06 37.5 5.7 96 1-110 22-125 (337)
85 1eiw_A Hypothetical protein MT 92.6 0.44 1.5E-05 30.8 6.3 55 28-98 19-73 (111)
86 3rfq_A Pterin-4-alpha-carbinol 92.5 0.034 1.1E-06 39.2 0.9 67 3-71 30-102 (185)
87 3kbq_A Protein TA0487; structu 92.5 0.055 1.9E-06 37.7 2.0 72 2-74 2-78 (172)
88 2pjk_A 178AA long hypothetical 92.4 0.11 3.6E-06 36.2 3.3 69 3-71 15-94 (178)
89 1z0s_A Probable inorganic poly 92.2 0.31 1E-05 36.4 5.9 71 4-101 30-100 (278)
90 3ff4_A Uncharacterized protein 92.2 0.7 2.4E-05 30.1 7.0 95 3-104 4-117 (122)
91 2an1_A Putative kinase; struct 92.1 0.072 2.5E-06 39.4 2.3 84 3-101 5-96 (292)
92 1y5e_A Molybdenum cofactor bio 92.0 0.09 3.1E-06 36.2 2.6 69 3-74 13-88 (169)
93 1e2b_A Enzyme IIB-cellobiose; 92.0 0.24 8.2E-06 31.5 4.4 57 1-65 1-57 (106)
94 1t0b_A THUA-like protein; treh 91.9 0.19 6.4E-06 36.9 4.4 106 3-113 7-120 (252)
95 2ark_A Flavodoxin; FMN, struct 91.5 0.5 1.7E-05 32.4 6.1 56 3-66 4-60 (188)
96 1mkz_A Molybdenum cofactor bio 91.5 0.11 3.6E-06 36.0 2.5 70 2-74 9-85 (172)
97 4gi5_A Quinone reductase; prot 90.9 0.48 1.6E-05 35.3 5.7 42 1-49 20-65 (280)
98 1ydg_A Trp repressor binding p 90.8 0.36 1.2E-05 33.5 4.7 40 3-47 6-45 (211)
99 3b6i_A Flavoprotein WRBA; flav 90.6 0.66 2.3E-05 31.6 5.9 57 3-65 1-75 (198)
100 1t5b_A Acyl carrier protein ph 90.6 1.5 5.2E-05 29.7 7.8 43 3-51 1-49 (201)
101 2g2c_A Putative molybdenum cof 90.4 0.099 3.4E-06 35.9 1.5 72 2-74 4-85 (167)
102 2vzf_A NADH-dependent FMN redu 90.4 0.12 4E-06 36.0 1.9 56 3-65 2-76 (197)
103 3iwt_A 178AA long hypothetical 89.9 0.4 1.4E-05 32.9 4.3 72 3-74 15-97 (178)
104 3klb_A Putative flavoprotein; 89.8 1.1 3.8E-05 30.0 6.4 14 1-14 2-15 (162)
105 2is8_A Molybdopterin biosynthe 89.1 0.1 3.5E-06 35.7 0.7 71 3-74 1-78 (164)
106 2q62_A ARSH; alpha/beta, flavo 89.1 0.65 2.2E-05 33.8 5.1 58 1-65 32-105 (247)
107 2zuv_A Lacto-N-biose phosphory 89.1 0.5 1.7E-05 39.7 4.9 108 4-115 439-569 (759)
108 2hna_A Protein MIOC, flavodoxi 88.4 2.7 9.3E-05 27.3 7.5 57 3-69 1-57 (147)
109 1f4p_A Flavodoxin; electron tr 88.1 1.3 4.5E-05 28.7 5.7 55 4-66 1-56 (147)
110 1rtt_A Conserved hypothetical 87.1 0.69 2.3E-05 31.7 4.0 54 3-65 6-79 (193)
111 3h75_A Periplasmic sugar-bindi 87.0 0.78 2.7E-05 33.9 4.5 84 1-99 1-93 (350)
112 4hs4_A Chromate reductase; tri 86.8 1.2 4.2E-05 31.1 5.2 105 1-116 4-145 (199)
113 1rli_A Trp repressor binding p 86.8 1.3 4.4E-05 29.7 5.2 37 3-47 3-39 (184)
114 3rot_A ABC sugar transporter, 86.8 1 3.6E-05 32.3 5.0 85 1-98 1-92 (297)
115 4ici_A Putative flavoprotein; 86.8 3.2 0.00011 28.1 7.2 14 1-14 11-24 (171)
116 1di0_A Lumazine synthase; tran 85.3 1 3.6E-05 30.8 4.1 92 1-96 8-110 (158)
117 3g1w_A Sugar ABC transporter; 84.9 2.1 7.1E-05 30.6 5.8 85 1-98 1-92 (305)
118 3f2v_A General stress protein 84.5 1.2 4.2E-05 31.1 4.3 58 3-65 1-65 (192)
119 1uuy_A CNX1, molybdopterin bio 84.4 0.38 1.3E-05 32.8 1.5 71 3-74 5-87 (167)
120 2hpv_A FMN-dependent NADH-azor 84.1 1.8 6.1E-05 29.8 5.0 44 3-51 1-52 (208)
121 2pbq_A Molybdenum cofactor bio 83.2 1.2 4.1E-05 30.7 3.7 70 3-74 5-84 (178)
122 3qvl_A Putative hydantoin race 83.1 5.7 0.00019 28.7 7.5 91 3-114 1-113 (245)
123 3l6u_A ABC-type sugar transpor 82.8 4 0.00014 28.9 6.5 83 3-98 8-95 (293)
124 3edo_A Flavoprotein, putative 82.8 5.1 0.00017 26.3 6.6 29 3-40 3-33 (151)
125 2i0f_A 6,7-dimethyl-8-ribityll 82.8 3.6 0.00012 28.1 5.9 101 4-108 13-130 (157)
126 1jlj_A Gephyrin; globular alph 81.3 0.43 1.5E-05 33.5 0.8 71 3-74 14-94 (189)
127 2q9u_A A-type flavoprotein; fl 81.0 8 0.00027 29.3 8.0 91 3-99 256-348 (414)
128 3cs3_A Sugar-binding transcrip 80.8 12 0.00042 26.2 10.6 59 3-67 8-66 (277)
129 3s2y_A Chromate reductase; ura 81.8 0.32 1.1E-05 34.1 0.0 57 2-65 5-80 (199)
130 2c92_A 6,7-dimethyl-8-ribityll 80.5 1 3.5E-05 31.0 2.4 102 3-108 17-129 (160)
131 1ehs_A STB, heat-stable entero 80.3 0.22 7.7E-06 26.4 -0.7 17 94-110 31-47 (48)
132 3hly_A Flavodoxin-like domain; 79.8 3.5 0.00012 27.4 5.1 59 4-67 1-60 (161)
133 3nbm_A PTS system, lactose-spe 79.7 6.6 0.00023 24.9 6.1 55 3-65 6-60 (108)
134 3eqz_A Response regulator; str 79.6 1.4 4.9E-05 27.2 2.9 53 1-65 1-53 (135)
135 2bon_A Lipid kinase; DAG kinas 79.6 4.2 0.00014 30.4 5.9 94 1-110 26-129 (332)
136 3m9w_A D-xylose-binding peripl 77.7 3.7 0.00013 29.5 5.0 83 3-98 2-89 (313)
137 3o74_A Fructose transport syst 77.4 10 0.00036 26.2 7.2 80 3-98 2-88 (272)
138 2fzv_A Putative arsenical resi 77.2 3.2 0.00011 30.8 4.5 57 2-65 57-130 (279)
139 1ykg_A SIR-FP, sulfite reducta 76.9 2.3 7.8E-05 28.5 3.4 57 3-67 9-65 (167)
140 3p0r_A Azoreductase; structura 76.8 6.4 0.00022 27.4 5.9 44 3-51 4-53 (211)
141 2b99_A Riboflavin synthase; lu 76.5 9.7 0.00033 25.9 6.4 86 3-96 2-96 (156)
142 3r6w_A FMN-dependent NADH-azor 75.9 4.3 0.00015 28.1 4.7 43 3-51 1-49 (212)
143 3l49_A ABC sugar (ribose) tran 75.5 4 0.00014 28.9 4.5 82 3-98 5-92 (291)
144 4em8_A Ribose 5-phosphate isom 74.9 6.2 0.00021 26.7 5.1 60 1-68 5-74 (148)
145 3tb6_A Arabinose metabolism tr 74.9 9.8 0.00034 26.7 6.5 86 4-99 16-106 (298)
146 1sqs_A Conserved hypothetical 74.9 10 0.00035 26.7 6.6 38 3-47 1-43 (242)
147 3u7r_A NADPH-dependent FMN red 74.2 7.2 0.00025 27.0 5.5 87 3-99 2-111 (190)
148 3qq5_A Small GTP-binding prote 74.0 6.8 0.00023 30.6 5.9 93 5-110 320-414 (423)
149 3i42_A Response regulator rece 73.9 2.6 8.9E-05 25.8 2.9 33 1-43 1-33 (127)
150 1wu2_A MOEA protein, molybdopt 73.4 1.7 5.7E-05 33.9 2.2 67 3-69 182-261 (396)
151 2iuy_A Avigt4, glycosyltransfe 73.3 7.5 0.00026 28.1 5.7 43 1-46 1-56 (342)
152 2fn9_A Ribose ABC transporter, 73.3 11 0.00038 26.5 6.5 58 4-67 3-67 (290)
153 3uug_A Multiple sugar-binding 72.8 5.8 0.0002 28.6 4.9 83 2-98 2-90 (330)
154 3fvw_A Putative NAD(P)H-depend 72.5 3.6 0.00012 28.3 3.6 54 3-65 2-74 (192)
155 3pfn_A NAD kinase; structural 72.1 17 0.0006 27.9 7.6 36 57-102 107-142 (365)
156 3rpe_A MDAB, modulator of drug 71.9 2.9 0.0001 29.8 3.0 60 3-65 25-90 (218)
157 1czn_A Flavodoxin; FMN binding 71.2 5.5 0.00019 26.3 4.2 55 4-67 1-55 (169)
158 1hqk_A 6,7-dimethyl-8-ribityll 70.8 5.4 0.00018 27.1 4.0 102 3-108 12-128 (154)
159 2qr3_A Two-component system re 70.5 4 0.00014 25.2 3.2 33 1-43 1-33 (140)
160 5nul_A Flavodoxin; electron tr 70.2 6.9 0.00024 24.8 4.4 39 26-67 16-54 (138)
161 2fz5_A Flavodoxin; alpha/beta 70.2 9.2 0.00032 23.9 5.0 39 26-67 17-55 (137)
162 3jte_A Response regulator rece 70.0 4.5 0.00015 25.2 3.4 84 1-100 1-85 (143)
163 3u7i_A FMN-dependent NADH-azor 69.5 11 0.00038 26.5 5.7 45 3-51 4-55 (223)
164 1t0i_A YLR011WP; FMN binding p 69.4 4.7 0.00016 27.2 3.6 37 4-47 1-47 (191)
165 2obx_A DMRL synthase 1, 6,7-di 69.2 24 0.00081 23.9 7.2 90 3-96 11-111 (157)
166 3u80_A 3-dehydroquinate dehydr 69.1 24 0.00081 23.9 7.1 92 1-97 2-104 (151)
167 3s40_A Diacylglycerol kinase; 69.0 17 0.00059 26.6 6.9 96 3-112 8-110 (304)
168 1jg7_A BGT, DNA beta-glucosylt 68.8 7.4 0.00025 28.6 4.6 70 4-73 1-73 (351)
169 3jy6_A Transcriptional regulat 68.6 17 0.00059 25.3 6.6 81 3-99 7-92 (276)
170 1rvv_A Riboflavin synthase; tr 67.7 5.1 0.00017 27.2 3.4 102 3-108 12-128 (154)
171 3qk7_A Transcriptional regulat 66.9 31 0.001 24.3 7.8 79 3-98 6-94 (294)
172 3gbv_A Putative LACI-family tr 66.8 20 0.00068 25.1 6.7 83 3-98 8-100 (304)
173 2h3h_A Sugar ABC transporter, 66.5 12 0.0004 26.8 5.4 82 3-98 1-88 (313)
174 2bmv_A Flavodoxin; electron tr 66.2 2.4 8.2E-05 28.1 1.5 52 3-67 1-53 (164)
175 3ksm_A ABC-type sugar transpor 66.1 29 0.001 23.8 8.0 82 4-98 1-90 (276)
176 1uz5_A MOEA protein, 402AA lon 65.8 1.5 5E-05 34.3 0.4 67 3-69 180-257 (402)
177 1g8l_A Molybdopterin biosynthe 65.4 2.1 7E-05 33.6 1.2 68 3-70 177-255 (411)
178 3fni_A Putative diflavin flavo 65.3 12 0.00041 24.8 4.9 60 3-67 4-65 (159)
179 1obo_A Flavodoxin; electron tr 65.2 4.3 0.00015 26.8 2.6 53 4-66 2-54 (169)
180 1tjy_A Sugar transport protein 65.2 12 0.00041 27.0 5.3 83 3-98 3-91 (316)
181 3nq4_A 6,7-dimethyl-8-ribityll 65.0 29 0.001 23.5 7.9 102 3-108 12-129 (156)
182 3clk_A Transcription regulator 64.4 34 0.0012 24.0 8.0 62 3-68 8-75 (290)
183 2ioy_A Periplasmic sugar-bindi 64.4 17 0.00058 25.5 5.9 59 3-67 1-66 (283)
184 3re1_A Uroporphyrinogen-III sy 63.5 1.7 5.9E-05 31.5 0.4 79 28-114 28-116 (269)
185 3egc_A Putative ribose operon 63.3 17 0.0006 25.5 5.8 62 3-68 8-74 (291)
186 2fvy_A D-galactose-binding per 63.1 19 0.00063 25.4 5.9 83 3-99 2-91 (309)
187 3o1i_D Periplasmic protein TOR 62.9 11 0.00038 26.5 4.7 82 3-98 5-93 (304)
188 1d4a_A DT-diaphorase, quinone 62.8 23 0.00079 25.6 6.4 39 3-48 2-44 (273)
189 3snk_A Response regulator CHEY 62.2 12 0.00042 22.9 4.3 51 3-64 14-65 (135)
190 1c2y_A Protein (lumazine synth 61.6 8.9 0.0003 26.1 3.6 102 3-108 13-128 (156)
191 1kz1_A 6,7-dimethyl-8-ribityll 61.5 14 0.00048 25.2 4.7 102 3-108 17-134 (159)
192 3soz_A ORF 245 protein, cytopl 61.4 4.2 0.00015 29.6 2.2 72 27-98 36-117 (248)
193 1tvm_A PTS system, galactitol- 61.3 27 0.00093 21.8 7.4 37 27-65 40-76 (113)
194 2ohh_A Type A flavoprotein FPR 60.8 18 0.00061 27.1 5.7 91 3-99 256-350 (404)
195 3gv0_A Transcriptional regulat 60.2 39 0.0013 23.6 7.2 81 3-98 8-95 (288)
196 1ag9_A Flavodoxin; electron tr 59.9 6.9 0.00023 26.2 2.9 54 4-67 1-54 (175)
197 3lua_A Response regulator rece 59.7 7.8 0.00027 24.0 3.0 85 1-99 1-88 (140)
198 3kto_A Response regulator rece 59.2 7.3 0.00025 24.1 2.8 51 3-64 6-56 (136)
199 3gfs_A FMN-dependent NADPH-azo 59.2 18 0.00063 23.8 5.0 87 4-99 1-103 (174)
200 2vk2_A YTFQ, ABC transporter p 58.9 17 0.00059 25.8 5.1 81 3-98 2-89 (306)
201 2x6q_A Trehalose-synthase TRET 58.1 27 0.00094 25.8 6.3 42 1-46 38-79 (416)
202 2fts_A Gephyrin; gephyrin, neu 57.8 2.6 8.8E-05 33.1 0.4 67 3-69 181-258 (419)
203 3bbl_A Regulatory protein of L 57.6 46 0.0016 23.3 7.4 59 3-67 4-73 (287)
204 1bvy_F Protein (cytochrome P45 57.3 43 0.0015 22.9 8.0 57 3-68 21-77 (191)
205 8abp_A L-arabinose-binding pro 57.1 16 0.00056 25.7 4.7 80 3-98 2-88 (306)
206 3hp4_A GDSL-esterase; psychrot 56.9 14 0.00048 24.0 4.0 96 4-99 3-110 (185)
207 2fep_A Catabolite control prot 56.7 33 0.0011 24.1 6.3 80 3-99 16-102 (289)
208 2rdm_A Response regulator rece 56.6 13 0.00045 22.4 3.7 33 1-43 3-35 (132)
209 3c3m_A Response regulator rece 56.6 12 0.00041 23.1 3.5 32 1-42 1-32 (138)
210 2h0a_A TTHA0807, transcription 56.2 46 0.0016 22.9 8.3 79 6-99 2-85 (276)
211 3tem_A Ribosyldihydronicotinam 55.7 30 0.001 24.4 5.8 39 3-48 1-43 (228)
212 2e11_A Hydrolase; dimethylarse 55.7 6.2 0.00021 28.1 2.2 21 1-21 1-21 (266)
213 2yq5_A D-isomer specific 2-hyd 55.6 13 0.00043 28.3 4.0 53 3-66 1-53 (343)
214 3crn_A Response regulator rece 55.6 12 0.00041 22.9 3.4 32 1-42 1-32 (132)
215 3kke_A LACI family transcripti 55.0 38 0.0013 23.9 6.4 79 4-98 16-100 (303)
216 4b4t_W RPN10, 26S proteasome r 54.5 19 0.00063 26.5 4.6 47 61-112 110-164 (268)
217 2amj_A Modulator of drug activ 54.4 9.8 0.00033 26.3 3.0 60 3-65 12-77 (204)
218 1ejb_A Lumazine synthase; anal 54.3 9.1 0.00031 26.4 2.7 102 3-108 16-137 (168)
219 3lcm_A SMU.1420, putative oxid 54.1 41 0.0014 22.8 6.2 39 4-49 1-42 (196)
220 1ccw_A Protein (glutamate muta 53.3 19 0.00065 23.3 4.1 83 1-95 1-88 (137)
221 3k9c_A Transcriptional regulat 53.1 51 0.0017 23.1 6.8 60 3-68 12-76 (289)
222 3cfy_A Putative LUXO repressor 52.7 23 0.00077 21.8 4.4 31 1-41 1-32 (137)
223 2gkg_A Response regulator homo 52.5 9.7 0.00033 22.7 2.5 33 1-43 3-35 (127)
224 2wc1_A Flavodoxin; electron tr 52.2 1.4 4.7E-05 29.9 -1.8 52 3-66 1-55 (182)
225 2a3n_A Putative glucosamine-fr 52.0 49 0.0017 24.7 6.8 81 4-100 55-137 (355)
226 3brs_A Periplasmic binding pro 51.8 16 0.00053 25.6 3.8 82 3-98 5-96 (289)
227 1e5d_A Rubredoxin\:oxygen oxid 51.5 40 0.0014 25.1 6.3 61 3-68 252-313 (402)
228 2rir_A Dipicolinate synthase, 51.2 14 0.00048 27.0 3.6 53 1-64 5-66 (300)
229 3k4h_A Putative transcriptiona 51.1 58 0.002 22.5 7.5 79 3-98 8-98 (292)
230 3d02_A Putative LACI-type tran 50.0 36 0.0012 23.8 5.6 82 3-98 4-92 (303)
231 3re1_A Uroporphyrinogen-III sy 49.4 38 0.0013 24.2 5.6 54 3-67 141-202 (269)
232 3tty_A Beta-GAL, beta-galactos 49.1 73 0.0025 26.3 7.9 72 29-114 430-515 (675)
233 2x7x_A Sensor protein; transfe 48.7 52 0.0018 23.5 6.3 80 3-98 6-93 (325)
234 3ouz_A Biotin carboxylase; str 48.0 22 0.00077 27.2 4.4 34 1-45 4-37 (446)
235 3lwz_A 3-dehydroquinate dehydr 47.5 49 0.0017 22.4 5.5 69 1-69 4-84 (153)
236 3d4o_A Dipicolinate synthase s 47.2 20 0.00069 26.0 3.9 54 1-65 3-65 (293)
237 1yob_A Flavodoxin 2, flavodoxi 46.9 9.3 0.00032 25.6 1.9 51 4-66 1-54 (179)
238 2rgy_A Transcriptional regulat 46.7 71 0.0024 22.2 8.2 81 3-99 8-97 (290)
239 1yt5_A Inorganic polyphosphate 46.3 10 0.00034 27.4 2.0 34 57-101 40-73 (258)
240 4es6_A Uroporphyrinogen-III sy 46.2 53 0.0018 23.0 6.0 53 3-66 133-193 (254)
241 3etn_A Putative phosphosugar i 46.0 55 0.0019 22.6 5.9 90 3-108 59-152 (220)
242 3ha2_A NADPH-quinone reductase 46.0 19 0.00065 24.5 3.4 56 4-65 1-58 (177)
243 3p9z_A Uroporphyrinogen III co 45.9 39 0.0013 23.5 5.1 52 3-65 110-168 (229)
244 3n53_A Response regulator rece 45.2 20 0.00068 22.0 3.2 26 1-36 1-26 (140)
245 3d8u_A PURR transcriptional re 45.0 34 0.0011 23.6 4.7 59 3-67 3-68 (275)
246 3d7n_A Flavodoxin, WRBA-like p 44.9 15 0.0005 24.9 2.7 52 3-65 6-61 (193)
247 2xhz_A KDSD, YRBH, arabinose 5 44.5 43 0.0015 22.0 5.0 88 5-108 51-140 (183)
248 3e3m_A Transcriptional regulat 44.4 53 0.0018 23.9 5.9 78 4-98 71-155 (355)
249 4dik_A Flavoprotein; TM0755, e 44.3 72 0.0025 24.6 6.8 87 4-96 266-356 (410)
250 3hy3_A 5-formyltetrahydrofolat 44.2 9.4 0.00032 26.6 1.6 49 58-106 128-181 (203)
251 3ia7_A CALG4; glycosysltransfe 44.2 33 0.0011 25.1 4.7 39 1-45 2-40 (402)
252 3hcw_A Maltose operon transcri 44.1 13 0.00046 26.3 2.4 66 3-68 7-78 (295)
253 2iks_A DNA-binding transcripti 43.8 42 0.0014 23.5 5.1 60 4-68 21-86 (293)
254 1dbw_A Transcriptional regulat 43.8 34 0.0011 20.4 4.1 33 1-43 1-33 (126)
255 3grc_A Sensor protein, kinase; 43.6 24 0.00081 21.6 3.4 84 3-102 6-90 (140)
256 3h5o_A Transcriptional regulat 43.6 40 0.0014 24.3 5.0 80 4-98 63-147 (339)
257 3fxa_A SIS domain protein; str 43.4 32 0.0011 23.2 4.2 80 5-100 47-127 (201)
258 3h5i_A Response regulator/sens 43.1 23 0.0008 21.8 3.3 32 2-43 4-35 (140)
259 3g85_A Transcriptional regulat 42.9 81 0.0028 21.8 8.4 61 3-67 11-77 (289)
260 1srr_A SPO0F, sporulation resp 42.5 26 0.0009 20.8 3.4 31 1-41 1-31 (124)
261 3kjx_A Transcriptional regulat 42.5 51 0.0017 23.8 5.5 78 4-98 69-153 (344)
262 4fu0_A D-alanine--D-alanine li 42.3 32 0.0011 25.6 4.4 42 1-44 1-42 (357)
263 3c3k_A Alanine racemase; struc 42.3 70 0.0024 22.2 6.1 61 3-67 8-73 (285)
264 3e61_A Putative transcriptiona 42.0 33 0.0011 23.7 4.2 79 3-98 8-92 (277)
265 3t6k_A Response regulator rece 41.6 29 0.00099 21.3 3.5 33 1-43 2-34 (136)
266 2o20_A Catabolite control prot 41.3 70 0.0024 22.9 6.1 58 4-67 64-128 (332)
267 3rqi_A Response regulator prot 41.1 24 0.00081 23.1 3.2 33 1-43 5-37 (184)
268 1ehi_A LMDDL2, D-alanine:D-lac 41.1 44 0.0015 25.1 5.0 44 1-46 1-45 (377)
269 2l2q_A PTS system, cellobiose- 40.7 28 0.00094 21.6 3.3 36 28-65 23-58 (109)
270 3i12_A D-alanine-D-alanine lig 40.6 38 0.0013 25.3 4.6 44 1-46 1-44 (364)
271 3eag_A UDP-N-acetylmuramate:L- 40.3 1.1E+02 0.0037 22.4 9.0 33 3-45 4-36 (326)
272 2bpo_A CPR, P450R, NADPH-cytoc 40.0 37 0.0012 28.1 4.7 58 2-67 48-107 (682)
273 2rjo_A Twin-arginine transloca 40.0 38 0.0013 24.3 4.4 81 3-98 5-94 (332)
274 1e4e_A Vancomycin/teicoplanin 40.0 40 0.0014 24.8 4.6 43 1-45 1-43 (343)
275 2i87_A D-alanine-D-alanine lig 39.5 27 0.00093 26.0 3.6 44 1-46 1-44 (364)
276 3sho_A Transcriptional regulat 39.5 46 0.0016 21.9 4.5 82 4-100 40-122 (187)
277 1dc7_A NTRC, nitrogen regulati 39.5 24 0.00082 20.8 2.8 32 1-42 1-32 (124)
278 3eod_A Protein HNR; response r 39.2 36 0.0012 20.4 3.6 32 2-43 6-37 (130)
279 3kht_A Response regulator; PSI 39.0 32 0.0011 21.1 3.5 34 2-45 4-37 (144)
280 2rjn_A Response regulator rece 38.8 35 0.0012 21.3 3.6 83 1-100 5-87 (154)
281 3lk7_A UDP-N-acetylmuramoylala 38.7 1.3E+02 0.0044 23.1 7.5 32 3-45 9-40 (451)
282 3hdv_A Response regulator; PSI 38.5 31 0.0011 20.9 3.3 31 3-43 7-37 (136)
283 3cg4_A Response regulator rece 38.2 35 0.0012 20.7 3.5 32 2-43 6-37 (142)
284 1j5x_A Glucosamine-6-phosphate 37.8 94 0.0032 23.0 6.4 80 4-100 53-135 (342)
285 3eua_A Putative fructose-amino 37.8 43 0.0015 24.8 4.5 90 4-109 26-119 (329)
286 2dri_A D-ribose-binding protei 37.7 98 0.0033 21.3 9.3 60 4-67 2-66 (271)
287 3e5n_A D-alanine-D-alanine lig 37.6 44 0.0015 25.3 4.6 44 1-46 20-63 (386)
288 3svl_A Protein YIEF; E. coli C 37.5 33 0.0011 23.4 3.5 106 1-116 1-144 (193)
289 3mw8_A Uroporphyrinogen-III sy 37.4 35 0.0012 23.7 3.8 54 3-67 120-181 (240)
290 1gud_A ALBP, D-allose-binding 37.1 65 0.0022 22.5 5.2 60 4-67 2-68 (288)
291 3k3p_A D-alanine--D-alanine li 37.0 43 0.0015 25.5 4.4 44 1-46 35-78 (383)
292 1jr2_A Uroporphyrinogen-III sy 36.9 30 0.001 24.9 3.4 57 3-67 21-85 (286)
293 1xhf_A DYE resistance, aerobic 36.4 40 0.0014 19.8 3.5 32 1-42 1-32 (123)
294 3hba_A Putative phosphosugar i 36.0 90 0.0031 23.2 6.0 80 4-100 43-125 (334)
295 3brq_A HTH-type transcriptiona 35.9 61 0.0021 22.4 4.9 78 4-98 20-107 (296)
296 3h5t_A Transcriptional regulat 35.5 1.2E+02 0.004 22.0 6.6 61 4-67 69-137 (366)
297 3fkj_A Putative phosphosugar i 35.3 56 0.0019 24.4 4.8 89 4-108 41-133 (347)
298 1ycg_A Nitric oxide reductase; 35.1 74 0.0025 23.5 5.5 89 4-98 252-341 (398)
299 1iow_A DD-ligase, DDLB, D-ALA\ 34.8 1.2E+02 0.004 21.3 6.5 59 2-65 1-61 (306)
300 3c48_A Predicted glycosyltrans 34.8 89 0.003 23.0 5.9 45 2-46 19-68 (438)
301 4hv4_A UDP-N-acetylmuramate--L 34.4 1.3E+02 0.0044 23.6 6.9 54 4-67 23-90 (494)
302 1d3y_A DNA topoisomerase VI A 34.3 1E+02 0.0036 22.7 6.1 48 58-112 145-198 (301)
303 2qsj_A DNA-binding response re 34.1 27 0.00093 21.7 2.5 28 1-38 1-29 (154)
304 1id1_A Putative potassium chan 34.0 54 0.0019 20.8 4.0 34 1-45 1-34 (153)
305 1qkk_A DCTD, C4-dicarboxylate 33.5 85 0.0029 19.3 5.1 80 3-99 3-82 (155)
306 3hs3_A Ribose operon repressor 33.4 15 0.0005 25.8 1.2 59 3-66 10-75 (277)
307 3qy9_A DHPR, dihydrodipicolina 33.3 1.3E+02 0.0044 21.4 7.6 11 1-11 1-11 (243)
308 2m1z_A LMO0427 protein; homolo 33.2 55 0.0019 20.6 3.8 58 1-67 1-66 (106)
309 4a3s_A 6-phosphofructokinase; 33.0 45 0.0015 25.0 3.9 42 61-107 5-46 (319)
310 2qxy_A Response regulator; reg 32.2 45 0.0015 20.3 3.3 81 1-99 1-82 (142)
311 2vvp_A Ribose-5-phosphate isom 31.9 30 0.001 23.6 2.5 35 1-43 1-35 (162)
312 2iya_A OLEI, oleandomycin glyc 31.8 65 0.0022 24.0 4.7 40 1-46 10-49 (424)
313 3r5x_A D-alanine--D-alanine li 31.6 24 0.00083 25.3 2.1 60 3-65 3-62 (307)
314 3ghy_A Ketopantoate reductase 31.5 46 0.0016 24.5 3.7 33 1-44 1-33 (335)
315 3hr4_A Nitric oxide synthase, 30.7 1.4E+02 0.0048 21.0 7.0 57 3-68 40-96 (219)
316 2jba_A Phosphate regulon trans 30.3 40 0.0014 19.9 2.8 51 3-64 2-52 (127)
317 3l9w_A Glutathione-regulated p 30.3 63 0.0022 24.9 4.4 56 3-65 236-299 (413)
318 3afo_A NADH kinase POS5; alpha 30.0 29 0.00098 26.9 2.4 34 58-101 114-148 (388)
319 1dbq_A Purine repressor; trans 29.9 1.2E+02 0.004 20.9 5.5 60 3-67 7-72 (289)
320 1wcw_A Uroporphyrinogen III sy 29.8 29 0.00099 24.4 2.3 53 3-67 8-68 (261)
321 2zay_A Response regulator rece 29.4 34 0.0012 21.0 2.4 31 2-42 7-37 (147)
322 3dbi_A Sugar-binding transcrip 29.2 1.6E+02 0.0053 21.0 6.9 59 3-67 61-128 (338)
323 2iyf_A OLED, oleandomycin glyc 28.9 56 0.0019 24.3 3.8 40 1-46 5-44 (430)
324 3cnb_A DNA-binding response re 28.4 49 0.0017 19.9 3.0 32 3-44 8-41 (143)
325 2zbk_A Type II DNA topoisomera 28.3 1.5E+02 0.0053 22.7 6.3 47 59-112 226-277 (389)
326 2gek_A Phosphatidylinositol ma 28.3 1.3E+02 0.0044 21.7 5.7 41 3-46 20-61 (406)
327 2r60_A Glycosyl transferase, g 28.0 1.1E+02 0.0038 23.2 5.5 46 1-46 4-59 (499)
328 4ds3_A Phosphoribosylglycinami 27.9 78 0.0027 22.2 4.2 15 1-15 5-19 (209)
329 3g68_A Putative phosphosugar i 27.9 1.8E+02 0.0063 21.5 6.6 80 4-100 35-117 (352)
330 1k66_A Phytochrome response re 27.9 53 0.0018 19.9 3.1 33 1-43 4-38 (149)
331 3bil_A Probable LACI-family tr 27.8 86 0.003 22.7 4.7 58 4-67 67-131 (348)
332 3k1y_A Oxidoreductase; structu 27.4 1.2E+02 0.0042 20.5 5.1 38 3-47 11-58 (191)
333 2b4a_A BH3024; flavodoxin-like 27.0 70 0.0024 19.2 3.5 33 1-43 13-45 (138)
334 3vot_A L-amino acid ligase, BL 26.8 2E+02 0.0069 21.5 8.9 53 1-66 1-55 (425)
335 3dqz_A Alpha-hydroxynitrIle ly 26.7 1.4E+02 0.0047 19.5 5.9 35 76-110 57-92 (258)
336 3fj1_A Putative phosphosugar i 26.7 1.2E+02 0.0041 22.5 5.3 89 4-109 44-136 (344)
337 3l5o_A Uncharacterized protein 26.7 30 0.001 25.5 1.9 50 4-68 142-196 (270)
338 3kcn_A Adenylate cyclase homol 26.6 64 0.0022 19.9 3.3 31 2-43 3-33 (151)
339 3bio_A Oxidoreductase, GFO/IDH 26.5 1.8E+02 0.0063 21.0 7.0 12 1-12 7-18 (304)
340 3i33_A Heat shock-related 70 k 26.2 23 0.00077 26.6 1.2 48 57-111 350-403 (404)
341 3cpr_A Dihydrodipicolinate syn 26.1 1.5E+02 0.005 21.7 5.7 41 57-97 49-90 (304)
342 1zxx_A 6-phosphofructokinase; 26.0 1E+02 0.0035 23.1 4.7 42 61-107 5-46 (319)
343 3hv2_A Response regulator/HD d 26.0 72 0.0025 19.7 3.5 81 3-100 14-94 (153)
344 3tqt_A D-alanine--D-alanine li 25.9 99 0.0034 23.3 4.7 44 1-46 2-45 (372)
345 2a6a_A Hypothetical protein TM 25.7 64 0.0022 22.7 3.4 48 56-108 64-112 (218)
346 2w1v_A Nitrilase-2, nitrilase 25.7 51 0.0017 23.4 3.0 14 1-14 1-14 (276)
347 3n8k_A 3-dehydroquinate dehydr 25.6 54 0.0019 22.6 2.9 69 1-69 26-105 (172)
348 2ioj_A Hypothetical protein AF 25.6 80 0.0027 20.0 3.7 41 58-108 74-114 (139)
349 1gsa_A Glutathione synthetase; 25.5 56 0.0019 23.0 3.2 40 4-46 2-41 (316)
350 2q2e_A Type II DNA topoisomera 25.4 90 0.0031 23.8 4.4 48 58-112 218-270 (369)
351 2fcr_A Flavodoxin; electron tr 25.4 79 0.0027 20.6 3.7 53 5-66 1-53 (173)
352 3fro_A GLGA glycogen synthase; 25.1 63 0.0022 23.6 3.5 41 3-47 2-45 (439)
353 2ixd_A LMBE-related protein; h 25.1 1.3E+02 0.0044 21.3 5.0 43 1-49 1-43 (242)
354 1pfk_A Phosphofructokinase; tr 24.9 1E+02 0.0034 23.1 4.6 42 61-107 6-47 (320)
355 1ivn_A Thioesterase I; hydrola 24.9 1.4E+02 0.0049 19.1 6.0 72 24-98 22-105 (190)
356 3lte_A Response regulator; str 24.7 73 0.0025 18.9 3.3 31 3-43 6-36 (132)
357 1ii7_A MRE11 nuclease; RAD50, 24.3 1.8E+02 0.0062 21.0 5.9 41 58-98 40-81 (333)
358 3a10_A Response regulator; pho 24.2 83 0.0028 18.1 3.4 31 3-43 1-31 (116)
359 2l69_A Rossmann 2X3 fold prote 23.8 1.4E+02 0.0048 18.6 4.4 72 4-88 1-74 (134)
360 3npg_A Uncharacterized DUF364 23.6 29 0.00098 25.1 1.2 39 29-68 128-174 (249)
361 2o2g_A Dienelactone hydrolase; 23.5 1.1E+02 0.0037 19.6 4.2 34 76-109 93-132 (223)
362 3av0_A DNA double-strand break 23.5 1.5E+02 0.0053 22.1 5.5 41 58-98 60-101 (386)
363 3nhm_A Response regulator; pro 23.4 75 0.0026 18.8 3.1 31 2-43 3-33 (133)
364 3ivz_A Nitrilase; alpha-beta s 23.4 75 0.0026 22.3 3.5 20 3-22 1-20 (262)
365 1dcf_A ETR1 protein; beta-alph 23.3 97 0.0033 18.5 3.7 30 3-42 7-36 (136)
366 3cg0_A Response regulator rece 23.2 54 0.0018 19.7 2.4 81 2-99 8-89 (140)
367 1sou_A 5,10-methenyltetrahydro 23.1 23 0.00078 24.5 0.6 44 57-106 110-158 (194)
368 3ibs_A Conserved hypothetical 23.1 67 0.0023 21.4 3.1 19 83-101 130-148 (218)
369 3flu_A DHDPS, dihydrodipicolin 22.8 1.5E+02 0.005 21.6 5.0 41 57-97 40-81 (297)
370 1uf3_A Hypothetical protein TT 22.7 1.5E+02 0.0052 19.5 4.9 39 58-99 32-70 (228)
371 3cz5_A Two-component response 22.7 65 0.0022 19.9 2.8 31 1-41 3-34 (153)
372 3q9s_A DNA-binding response re 22.6 77 0.0026 21.9 3.4 32 1-42 35-66 (249)
373 1xky_A Dihydrodipicolinate syn 22.5 1.5E+02 0.0051 21.7 5.0 41 57-97 45-86 (301)
374 2wkj_A N-acetylneuraminate lya 22.1 1.4E+02 0.0048 21.8 4.9 41 57-97 44-85 (303)
375 4fxs_A Inosine-5'-monophosphat 21.9 1.9E+02 0.0066 22.7 5.9 56 58-113 293-359 (496)
376 4eg0_A D-alanine--D-alanine li 21.9 93 0.0032 22.4 3.8 60 3-65 13-72 (317)
377 2p10_A MLL9387 protein; putati 21.9 77 0.0026 23.6 3.3 30 79-108 14-43 (286)
378 1f0k_A MURG, UDP-N-acetylgluco 21.7 95 0.0033 22.2 3.8 40 1-46 2-43 (364)
379 3zqu_A Probable aromatic acid 21.7 2.1E+02 0.0072 19.9 5.8 36 1-43 1-37 (209)
380 3l21_A DHDPS, dihydrodipicolin 21.7 1.5E+02 0.005 21.8 4.9 41 57-97 48-89 (304)
381 2ehh_A DHDPS, dihydrodipicolin 21.6 1.4E+02 0.0049 21.6 4.8 41 57-97 33-74 (294)
382 3hbl_A Pyruvate carboxylase; T 21.4 1.7E+02 0.0058 25.9 5.8 55 1-68 1-56 (1150)
383 2dzd_A Pyruvate carboxylase; b 21.4 80 0.0027 24.1 3.5 35 1-46 4-38 (461)
384 3jvd_A Transcriptional regulat 21.3 41 0.0014 24.3 1.7 57 4-67 65-128 (333)
385 3gt7_A Sensor protein; structu 21.2 95 0.0033 19.2 3.4 81 3-99 7-88 (154)
386 2yxg_A DHDPS, dihydrodipicolin 21.2 1.5E+02 0.0052 21.4 4.8 41 57-97 33-74 (289)
387 3qjg_A Epidermin biosynthesis 21.1 1.7E+02 0.0059 19.7 4.8 35 3-44 5-39 (175)
388 3ca8_A Protein YDCF; two domai 21.1 2E+02 0.0067 20.8 5.4 13 57-69 35-47 (266)
389 2pn1_A Carbamoylphosphate synt 21.0 2.3E+02 0.0078 20.1 6.1 14 1-14 2-15 (331)
390 1vi6_A 30S ribosomal protein S 21.0 72 0.0024 22.5 2.9 34 55-99 112-145 (208)
391 2fb9_A D-alanine:D-alanine lig 21.0 1.1E+02 0.0036 22.3 4.0 16 1-16 1-16 (322)
392 2a9o_A Response regulator; ess 20.7 1E+02 0.0034 17.7 3.3 30 3-42 1-30 (120)
393 1qo0_D AMIR; binding protein, 20.7 1.7E+02 0.0057 18.9 4.7 30 3-42 12-41 (196)
394 3d8t_A Uroporphyrinogen-III sy 20.7 67 0.0023 23.0 2.8 51 5-67 158-217 (286)
395 2p0y_A Hypothetical protein LP 20.6 32 0.0011 26.2 1.1 44 56-102 186-230 (341)
396 2him_A L-asparaginase 1; hydro 20.6 1.6E+02 0.0056 22.3 5.0 37 57-97 252-289 (358)
397 4dad_A Putative pilus assembly 20.5 25 0.00087 21.6 0.4 53 3-65 20-74 (146)
398 3m6m_D Sensory/regulatory prot 20.5 83 0.0028 19.3 2.9 31 3-43 14-44 (143)
399 2r85_A PURP protein PF1517; AT 20.4 1.1E+02 0.0038 21.8 4.0 33 2-46 1-33 (334)
400 3hdg_A Uncharacterized protein 20.4 86 0.0029 18.7 3.0 31 4-44 8-38 (137)
401 1jeo_A MJ1247, hypothetical pr 20.4 1.8E+02 0.0062 18.7 6.3 59 29-100 58-117 (180)
402 3rof_A Low molecular weight pr 20.4 1.9E+02 0.0066 19.0 5.9 39 1-44 4-43 (158)
403 3hzh_A Chemotaxis response reg 20.3 77 0.0026 19.8 2.8 29 3-41 36-64 (157)
404 2qvg_A Two component response 20.3 63 0.0022 19.5 2.3 30 4-43 8-39 (143)
405 1ys7_A Transcriptional regulat 20.3 95 0.0032 20.7 3.4 31 1-41 5-35 (233)
406 2q7x_A UPF0052 protein SP_1565 20.2 36 0.0012 25.7 1.2 43 56-101 182-225 (326)
407 4huj_A Uncharacterized protein 20.2 69 0.0024 21.9 2.7 31 1-42 21-51 (220)
408 2ojp_A DHDPS, dihydrodipicolin 20.0 1.7E+02 0.0059 21.1 4.9 40 58-97 35-75 (292)
No 1
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=99.91 E-value=1.8e-24 Score=161.63 Aligned_cols=111 Identities=23% Similarity=0.367 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCCchHHH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGNDVWIC 79 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~~~~~~ 79 (126)
|+++||+||++..... ...+.++|++.|.+++++++..++ +| ++++++|+|||+|||.+++++.+|+.
T Consensus 1 m~~~~vliiqh~~~e~---------~~~i~~~l~~~G~~v~v~~~~~~~~~p--~~~~~~d~lIl~GGp~~~~d~~~~~~ 69 (250)
T 3m3p_A 1 MSLKPVMIIQFSASEG---------PGHFGDFLAGEHIPFQVLRMDRSDPLP--AEIRDCSGLAMMGGPMSANDDLPWMP 69 (250)
T ss_dssp -CCCCEEEEESSSSCC---------CHHHHHHHHHTTCCEEEEEGGGTCCCC--SCGGGSSEEEECCCSSCTTSCCTTHH
T ss_pred CCCCeEEEEECCCCCC---------HHHHHHHHHHCCCeEEEEeccCCCcCc--CccccCCEEEECCCCCcccccchHHH
Confidence 8899999999976532 345778889999999999987654 33 35789999999999999888789999
Q ss_pred HHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165 80 KLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT 122 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~ 122 (126)
.+.++|+++++.++|+||||+|+|+|+.++||+|.+.+ +.+||
T Consensus 70 ~~~~~i~~~~~~~~PvlGIC~G~Qll~~~lGG~V~~~~~~e~G~ 113 (250)
T 3m3p_A 70 TLLALIRDAVAQRVPVIGHCLGGQLLAKAMGGEVTDSPHAEIGW 113 (250)
T ss_dssp HHHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCEEEeCCCCceee
Confidence 99999999999999999999999999999999999764 56666
No 2
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=99.88 E-value=1.7e-22 Score=149.18 Aligned_cols=108 Identities=18% Similarity=0.312 Sum_probs=87.3
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCC---CCchHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAH---GNDVWIC 79 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~---~~~~~~~ 79 (126)
|||+||++...+. ...+.+++++.|.+++++++..++ +| ++++++|+|||+|||.++. ++.+|+.
T Consensus 1 m~i~vi~h~~~e~---------~g~~~~~l~~~g~~~~~~~~~~~~~~p--~~~~~~d~lii~GGp~~~~~~~~~~~~~~ 69 (236)
T 3l7n_A 1 MRIHFILHETFEA---------PGAYLAWAALRGHDVSMTKVYRYEKLP--KDIDDFDMLILMGGPQSPSSTKKEFPYYD 69 (236)
T ss_dssp CEEEEEECCTTSC---------CHHHHHHHHHTTCEEEEEEGGGTCCCC--SCGGGCSEEEECCCSSCTTCCTTTCTTCC
T ss_pred CeEEEEeCCCCCC---------chHHHHHHHHCCCeEEEEeeeCCCCCC--CCccccCEEEECCCCCCcccccccCcccc
Confidence 5999999876642 234677888899999999987654 33 3578999999999999863 3458985
Q ss_pred H--HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165 80 K--LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT 122 (126)
Q Consensus 80 ~--~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~ 122 (126)
. +.++|+++++.++|+||||+|||+|++++||++.+.+ +.+|+
T Consensus 70 ~~~~~~~i~~~~~~~~PvLGIClG~QlL~~~~Gg~v~~~~~~~~G~ 115 (236)
T 3l7n_A 70 AQAEVKLIQKAAKSEKIIVGVCLGAQLMGVAYGADYLHSPKKEIGN 115 (236)
T ss_dssp HHHHHHHHHHHHHTTCEEEEETHHHHHHHHHTTCCCEEEEEEEEEE
T ss_pred hHHHHHHHHHHHHcCCCEEEEchHHHHHHHHhCCEEecCCCceeee
Confidence 5 8899999999999999999999999999999988753 45554
No 3
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=99.84 E-value=9.4e-21 Score=140.26 Aligned_cols=108 Identities=19% Similarity=0.280 Sum_probs=87.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCC--chHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGN--DVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~--~~~~~~ 80 (126)
.||+||++.+... ...+.++++..|.++.++.....+ +| +.+.++|+|||+||+.+++++ .+|+..
T Consensus 13 ~~~~~i~~~~~~~---------~~~i~~~l~~~G~~v~v~~~~~~~~~~--~~l~~~Dglil~GG~~~~~~~~~~~~l~~ 81 (239)
T 1o1y_A 13 VRVLAIRHVEIED---------LGMMEDIFREKNWSFDYLDTPKGEKLE--RPLEEYSLVVLLGGYMGAYEEEKYPFLKY 81 (239)
T ss_dssp CEEEEECSSTTSS---------CTHHHHHHHHTTCEEEEECGGGTCCCS--SCGGGCSEEEECCCSCCTTCTTTCTHHHH
T ss_pred eEEEEEECCCCCC---------chHHHHHHHhCCCcEEEeCCcCccccc--cchhcCCEEEECCCCccccCCccChhHHH
Confidence 6899999977642 234778888899999877765422 23 357889999999999888765 589888
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC--ccccc
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS--KIAGT 122 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~--~~~g~ 122 (126)
+.++|+++.+.++|+||||+|||+|+.++||++.+.+ +.+|+
T Consensus 82 ~~~~i~~~~~~~~PiLGIC~G~QlL~~alGG~v~~~~~g~~~G~ 125 (239)
T 1o1y_A 82 EFQLIEEILKKEIPFLGICLGSQMLAKVLGASVYRGKNGEEIGW 125 (239)
T ss_dssp HHHHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEECTTCCEEEE
T ss_pred HHHHHHHHHHCCCCEEEEchhHHHHHHHcCCeEecCCCCCcccc
Confidence 9999999988899999999999999999999998754 34443
No 4
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=99.80 E-value=2.9e-19 Score=148.18 Aligned_cols=99 Identities=18% Similarity=0.234 Sum_probs=85.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc-hHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND-VWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~-~~~~~~~ 82 (126)
++|+|+++ |++|++++.+++++.|.++++++... + ..+.++|+|||+|||.++++.. +|+..+.
T Consensus 447 k~IlviD~----------gdsf~~~l~~~l~~~G~~v~Vv~~d~---~--~~~~~~DgIIlsGGPg~p~d~~~p~i~~~~ 511 (645)
T 3r75_A 447 CRALIVDA----------EDHFTAMIAQQLSSLGLATEVCGVHD---A--VDLARYDVVVMGPGPGDPSDAGDPRIARLY 511 (645)
T ss_dssp CEEEEEES----------SCTHHHHHHHHHHHTTCEEEEEETTC---C--CCGGGCSEEEECCCSSCTTCTTSHHHHHHH
T ss_pred CEEEEEEC----------CccHHHHHHHHHHHCCCEEEEEECCC---c--ccccCCCEEEECCCCCChhhhhhhhHHHHH
Confidence 58888865 45789999999999999999888542 2 2457899999999999987765 8999999
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
++|+.+++.++|+||||+|||+|+.++||++.+.+
T Consensus 512 ~lI~~a~~~~iPiLGIClG~QlLa~alGG~V~~~~ 546 (645)
T 3r75_A 512 AWLRHLIDEGKPFMAVCLSHQILNAILGIPLVRRE 546 (645)
T ss_dssp HHHHHHHHHTCCEEEETHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHCCCCEEEECHHHHHHHHHhCCEEEcCC
Confidence 99999988999999999999999999999998754
No 5
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=99.79 E-value=3.6e-19 Score=136.59 Aligned_cols=113 Identities=14% Similarity=0.115 Sum_probs=85.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE--EEccCCCCCC------------C--CCCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV--FHVARGEFPD------------D--DDFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~p~------------~--~~~~~~d~iii~G 66 (126)
.+||+||++.+.. +.|..+|.++|.....++++ +++...+.+. . .+.++|||+||+|
T Consensus 47 plkI~ILnlmp~k-------~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITG 119 (312)
T 2h2w_A 47 PLEILILNLMPDK-------IKTEIQLLRLLGNTPLQVNVTLLYTETHKPKHTPIEHILKFYTTFSAVKDRKFDGFIITG 119 (312)
T ss_dssp CEEEEEECCCSSH-------HHHHHHHHHHHHSSSSCEEEEEECCSCCCCCSSCHHHHHHHCBCGGGTTTCCEEEEEECC
T ss_pred CceEEEEeCCCCc-------CchHHHHHHHhcCCCCcEEEEEEEccCCCCCCccHHHHhhccCCcccccccCcCEEEECC
Confidence 5799999997664 34778899999877666655 4443333221 1 1247899999999
Q ss_pred CCCCC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC--ccccCCccccc
Q 033165 67 SCNDA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS--SHINASKIAGT 122 (126)
Q Consensus 67 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg--~v~~~~~~~g~ 122 (126)
||... +++.+|+.++.++++.+.+.++|+||||||+|+++.++|| ++...+|++|+
T Consensus 120 sP~~~~~~ed~~yw~el~~li~~~~~~~~p~LGIC~GaQ~~l~~~~G~~k~~~~~K~~Gv 179 (312)
T 2h2w_A 120 APVELLPFEEVDYWEELTEIMEWSRHNVYSTMFICWAAQAGLYYFYGIPKYELPQKLSGV 179 (312)
T ss_dssp CSCTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEE
T ss_pred CCCCCCCCccCchHHHHHHHHHHHHHcCCcEEEECHHHHHHHHHhCCCccccCCCCEEEE
Confidence 99754 4556899999999999988999999999999998887877 55556788775
No 6
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=99.78 E-value=3.7e-19 Score=135.98 Aligned_cols=114 Identities=18% Similarity=0.203 Sum_probs=84.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE--EEccCCCCCC------------C--CCCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV--FHVARGEFPD------------D--DDFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~p~------------~--~~~~~~d~iii~G 66 (126)
.+||+||++.+.. +.|..+|.++|.....++++ +++...+.+. . ...++|||+||+|
T Consensus 35 plkI~ILnlmp~k-------~~te~qf~rlL~~~~~qv~v~~~~~~~~~~~~~~~~hl~~~y~~f~~~~~~~~DglIITG 107 (301)
T 2vdj_A 35 ALKIAILNLMPTK-------QETEAQLLRLIGNTPLQLDVHLLHMESHLSRNVAQEHLTSFYKTFRDIENEKFDGLIITG 107 (301)
T ss_dssp CEEEEEECCCSSH-------HHHHHHHHHHHTCSSSCEEEEEECCCC------------CCEECHHHHTTSCEEEEEECC
T ss_pred CceEEEEeCCCCc-------CchHHHHHHHhcCCCCcEEEEEEeccCCCCCCccHHHHhhcccCcccccccccCEEEECC
Confidence 4799999997764 34778899999877666655 4443222111 0 0246899999999
Q ss_pred CCCCC--CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCC--ccccCCcccccc
Q 033165 67 SCNDA--HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFS--SHINASKIAGTA 123 (126)
Q Consensus 67 ~~~~~--~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg--~v~~~~~~~g~~ 123 (126)
||.+. +++.+|+.++.++++.+.++++|+||||||+|+++.++|| ++...+|++|+.
T Consensus 108 ap~~~~~~ed~~yw~el~~li~~~~~~~~~~lgIC~GaQ~~l~~~~G~~k~~~~~K~~Gv~ 168 (301)
T 2vdj_A 108 APVETLSFEEVDYWEELKRIMEYSKTNVTSTLHICWGAQAGLYHHYGVQKYPLKEKMFGVF 168 (301)
T ss_dssp CTTTTSCGGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHHCCCCEEEEEEEEEEE
T ss_pred CCCcCCCcccCchHHHHHHHHHHHHHcCCcEEEEcHHHHHHHHHhCCCccccCCCCEEEEE
Confidence 99754 4556899999999999988999999999999997777777 444567887753
No 7
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=99.78 E-value=3.9e-19 Score=127.56 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=72.3
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCCc--hHHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGND--VWICKL 81 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~~--~~~~~~ 81 (126)
|+||++ +++|+.++.++|++.|.++.+++....++ +++. ++|+||++||+.++.+.. +| +
T Consensus 4 i~iid~----------~~s~~~~~~~~l~~~G~~~~v~~~~~~~~---~~~~~~~~dglil~gG~~~~~~~~~~~~---~ 67 (195)
T 1qdl_B 4 TLIIDN----------YDSFVYNIAQIVGELGSYPIVIRNDEISI---KGIERIDPDRLIISPGPGTPEKREDIGV---S 67 (195)
T ss_dssp EEEEEC----------SCSSHHHHHHHHHHTTCEEEEEETTTSCH---HHHHHHCCSEEEECCCSSCTTSHHHHTT---H
T ss_pred EEEEEC----------CCchHHHHHHHHHhCCCEEEEEeCCCCCH---HHHhhCCCCEEEECCCCCChhhhhhhhH---H
Confidence 999984 45677888999999999999888542111 1233 599999999988765421 23 3
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
.++++++ +.++|+||||+|||+|+.++||++.+.+
T Consensus 68 ~~~i~~~-~~~~PvLGIC~G~QlL~~~~gg~v~~~~ 102 (195)
T 1qdl_B 68 LDVIKYL-GKRTPILGVCLGHQAIGYAFGAKIRRAR 102 (195)
T ss_dssp HHHHHHH-TTTSCEEEETHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHh-cCCCcEEEEehHHHHHHHHhCCEEeccC
Confidence 4667764 6799999999999999999999998654
No 8
>2a9v_A GMP synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, ligase; 2.24A {Thermoplasma acidophilum} SCOP: c.23.16.1
Probab=99.77 E-value=4.1e-19 Score=129.27 Aligned_cols=100 Identities=24% Similarity=0.221 Sum_probs=76.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC-CCCCCCC--chHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS-CNDAHGN--DVWIC 79 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~-~~~~~~~--~~~~~ 79 (126)
|+||+++++.. +|+.++.++|++.|.++.+++... .++++.++|+|||+|| +.++++. .+|+.
T Consensus 13 ~~~i~~id~~~----------~~~~~~~~~l~~~G~~~~vv~~~~----~~~~l~~~DglIl~GG~p~~~~~~~~~~~l~ 78 (212)
T 2a9v_A 13 MLKIYVVDNGG----------QWTHREWRVLRELGVDTKIVPNDI----DSSELDGLDGLVLSGGAPNIDEELDKLGSVG 78 (212)
T ss_dssp CCBEEEEEESC----------CTTCHHHHHHHHTTCBCCEEETTS----CGGGGTTCSEEEEEEECSCGGGTGGGHHHHH
T ss_pred cceEEEEeCCC----------ccHHHHHHHHHHCCCEEEEEeCCC----CHHHHhCCCEEEECCCCCCCCcccccchhHH
Confidence 68999997654 577788999999999998887542 1235667999999999 8887764 24442
Q ss_pred HHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165 80 KLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT 122 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~ 122 (126)
+.+.+.++|+||||+|||+|+.++||++.+.+ ..+|+
T Consensus 79 ------~~~~~~~~PiLGIC~G~Qll~~~lGg~v~~~~~~~~G~ 116 (212)
T 2a9v_A 79 ------KYIDDHNYPILGICVGAQFIALHFGASVVKAKHPEFGK 116 (212)
T ss_dssp ------HHHHHCCSCEEEETHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred ------HHHHhCCCCEEEEChHHHHHHHHhCCEEEcCCCcccCc
Confidence 22346799999999999999999999998643 33443
No 9
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=99.75 E-value=2.4e-18 Score=122.58 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=73.8
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
|+|+++... |+.++.++|++.|.++.+++... . + +++ .++|+||++||+ ++.+ . ..+.+
T Consensus 3 i~iid~~~~----------~~~~~~~~l~~~G~~~~~~~~~~-~-~--~~~~~~~~dglil~Gg~-~~~~-~---~~~~~ 63 (189)
T 1wl8_A 3 IVIMDNGGQ----------YVHRIWRTLRYLGVETKIIPNTT-P-L--EEIKAMNPKGIIFSGGP-SLEN-T---GNCEK 63 (189)
T ss_dssp EEEEECSCT----------THHHHHHHHHHTTCEEEEEETTC-C-H--HHHHHTCCSEEEECCCS-CTTC-C---TTHHH
T ss_pred EEEEECCCc----------hHHHHHHHHHHCCCeEEEEECCC-C-h--HHhcccCCCEEEECCCC-Chhh-h---hhHHH
Confidence 999987654 56678899999999999887532 1 1 123 359999999998 5533 2 22456
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHhCCccccC-Cccccc
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINA-SKIAGT 122 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~-~~~~g~ 122 (126)
+++++.+.++|+||||+|||+|+.++||++.+. ...+|+
T Consensus 64 ~i~~~~~~~~PilGIC~G~Q~l~~~~gg~v~~~~~~~~G~ 103 (189)
T 1wl8_A 64 VLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGEKAEYSL 103 (189)
T ss_dssp HHHTGGGTCSCEEEETHHHHHHHHHHTCEEEECSCCSCEE
T ss_pred HHHHHhhCCCeEEEEcHHHHHHHHHhCCceecCCCcccCc
Confidence 777776789999999999999999999999873 344554
No 10
>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}
Probab=99.73 E-value=1.2e-17 Score=136.55 Aligned_cols=104 Identities=18% Similarity=0.238 Sum_probs=78.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCCc-hHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGND-VWIC 79 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~~-~~~~ 79 (126)
..||+||+++. +|++.+.+.+++.|..++++.... + + +++ .++||||+||||.+++++. +|+.
T Consensus 7 ~~~IlilD~Gs----------~~~~~I~r~lre~Gv~~eiv~~~~-~-~--~~i~~~~~dgIIlsGGp~s~~~~~~~~~~ 72 (556)
T 3uow_A 7 YDKILVLNFGS----------QYFHLIVKRLNNIKIFSETKDYGV-E-L--KDIKDMNIKGVILSGGPYSVTEAGSPHLK 72 (556)
T ss_dssp CCEEEEEESSC----------TTHHHHHHHHHHTTCCEEEEETTC-C-G--GGTTTSCEEEEEECCCSCCTTSTTCCCCC
T ss_pred CCEEEEEECCC----------ccHHHHHHHHHHCCCeEEEEECCC-C-H--HHHhhcCCCEEEECCCCCcccccCCcchh
Confidence 46899998865 477889999999999999887532 1 1 123 3799999999999887643 4433
Q ss_pred HHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC-Cccccc
Q 033165 80 KLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA-SKIAGT 122 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~-~~~~g~ 122 (126)
. ++++.+.+.++|+||||+|||+|++++||++.++ +.+.|.
T Consensus 73 ~--~l~~~a~~~g~PvLGIC~G~QlLa~~lGG~V~~~~~~E~G~ 114 (556)
T 3uow_A 73 K--EVFEYFLEKKIPIFGICYGMQEIAVQMNGEVKKSKTSEYGC 114 (556)
T ss_dssp H--HHHHHHHHTTCCEEEETHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred H--HHHHHhhhcCCCEEEECHHHHHHHHHhCCcEecCCCcccCC
Confidence 2 3455566679999999999999999999999875 344443
No 11
>2nv0_A Glutamine amidotransferase subunit PDXT; 3-layer(ABA) sandwich, rossmann fold, glutaminase; 1.73A {Bacillus subtilis} SCOP: c.23.16.1 PDB: 1r9g_A 2nv2_B*
Probab=99.72 E-value=1.2e-18 Score=124.63 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=69.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
|+||+|+++. ++|++++ ++|++.|.++.+++. + +++.++|+||++||+.+.+++..|...+.
T Consensus 1 ~m~I~il~~~----------~~~~~~~-~~l~~~g~~~~~~~~-----~--~~l~~~d~iil~GG~~~~~~~~~~~~~~~ 62 (196)
T 2nv0_A 1 MLTIGVLGLQ----------GAVREHI-HAIEACGAAGLVVKR-----P--EQLNEVDGLILPGGESTTMRRLIDTYQFM 62 (196)
T ss_dssp CCEEEEECSS----------SCCHHHH-HHHHHTTCEEEEECS-----G--GGGGGCSEEEECCSCHHHHHHHHHHTTCH
T ss_pred CcEEEEEEcc----------CCcHHHH-HHHHHCCCEEEEeCC-----h--HHHhhCCEEEECCCChhhHHHHhhhHHHH
Confidence 4799999852 3455655 778888988776652 1 24678999999999755544334444457
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCcc
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSH 113 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v 113 (126)
++++++.++++|+||||+|+|+|++++|+++
T Consensus 63 ~~i~~~~~~~~pilgIC~G~q~l~~~~gg~~ 93 (196)
T 2nv0_A 63 EPLREFAAQGKPMFGTCAGLIILAKEIAGSD 93 (196)
T ss_dssp HHHHHHHHTTCCEEEETHHHHHHSBCCC---
T ss_pred HHHHHHHHCCCcEEEECHHHHHHHHHhcCCC
Confidence 8899988899999999999999999999964
No 12
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=99.72 E-value=8.4e-19 Score=127.95 Aligned_cols=95 Identities=20% Similarity=0.242 Sum_probs=71.7
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
|.++||+|+++. ++|.+++ +.|++.|.++.++... ++++++|+|||+||+.+.+++..|...
T Consensus 21 ~~~~~I~il~~~----------~~~~~~~-~~l~~~G~~~~~~~~~-------~~l~~~Dglil~GG~~~~~~~~~~~~~ 82 (219)
T 1q7r_A 21 QSNMKIGVLGLQ----------GAVREHV-RAIEACGAEAVIVKKS-------EQLEGLDGLVLPGGESTTMRRLIDRYG 82 (219)
T ss_dssp CCCCEEEEESCG----------GGCHHHH-HHHHHTTCEEEEECSG-------GGGTTCSEEEECCCCHHHHHHHHHHTT
T ss_pred CCCCEEEEEeCC----------CCcHHHH-HHHHHCCCEEEEECCH-------HHHhhCCEEEECCCChHHHHHHhhhhH
Confidence 556899999652 2345544 6778889888776531 245689999999997654433334445
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCcc
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSH 113 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v 113 (126)
+.++|+++.+.++|+||||+|+|+|+.++|+++
T Consensus 83 ~~~~i~~~~~~~~PilGIC~G~QlL~~~~gg~~ 115 (219)
T 1q7r_A 83 LMEPLKQFAAAGKPMFGTCAGLILLAKRIVGYD 115 (219)
T ss_dssp CHHHHHHHHHTTCCEEEETTHHHHHEEEEESSC
T ss_pred HHHHHHHHHHcCCeEEEECHHHHHHHHHhCCCC
Confidence 678899998899999999999999999999976
No 13
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=99.72 E-value=1.2e-17 Score=119.47 Aligned_cols=94 Identities=14% Similarity=0.125 Sum_probs=69.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC------CCcCEEEEcCCCCCCCCCchH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF------GSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~------~~~d~iii~G~~~~~~~~~~~ 77 (126)
+||+||+ ++++|++++.++|++.|.++.+++... +. +++ .+.+++|++||+.++.+. .+
T Consensus 1 ~~i~iiD----------n~~s~~~~i~~~l~~~G~~~~v~~~~~---~~-~~i~~~l~~~~~~~iil~gGpg~~~~~-~~ 65 (192)
T 1i1q_B 1 ADILLLD----------NIDSFTWNLADQLRTNGHNVVIYRNHI---PA-QTLIDRLATMKNPVLMLSPGPGVPSEA-GC 65 (192)
T ss_dssp CEEEEEE----------CSCSSHHHHHHHHHHTTCEEEEEETTS---CS-HHHHHHHTTCSSEEEEECCCSSCGGGS-TT
T ss_pred CcEEEEE----------CCccHHHHHHHHHHHCCCeEEEEECCC---CH-HHHHHHhhhccCCeEEECCCCcCchhC-ch
Confidence 4899997 467889999999999999998887532 11 112 135579999999887542 23
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165 78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA 116 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~ 116 (126)
.. ++++. ++.++|+||||+|||+|++++||++.+.
T Consensus 66 ~~---~l~~~-~~~~~PilGIC~G~Qll~~~~Gg~v~~~ 100 (192)
T 1i1q_B 66 MP---ELLTR-LRGKLPIIGICLGHQAIVEAYGGYVGQA 100 (192)
T ss_dssp HH---HHHHH-HBTTBCEEEETHHHHHHHHHTSCCCCC-
T ss_pred HH---HHHHH-HhcCCCEEEECcChHHHHHHhCCEEEeC
Confidence 22 34443 4678999999999999999999998865
No 14
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=99.72 E-value=1.1e-17 Score=136.04 Aligned_cols=100 Identities=16% Similarity=0.216 Sum_probs=69.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCCc-hHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGND-VWIC 79 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~~-~~~~ 79 (126)
..||+||+++. +|+..+.+.+++.|..++++..... + +++. ++|||||||||.+++++. ++
T Consensus 10 ~~~I~IlD~g~----------~~~~~i~r~lr~~Gv~~~i~p~~~~--~--~~i~~~~~dgIILsGGp~sv~~~~~~~-- 73 (527)
T 3tqi_A 10 QHRILILDFGS----------QYAQLIARRVREIGVYCELMPCDID--E--ETIRDFNPHGIILSGGPETVTLSHTLR-- 73 (527)
T ss_dssp CSEEEEEECSC----------TTHHHHHHHHHHHTCEEEEEETTCC--S--SSSTTTCCSEEEECCCCC-----------
T ss_pred CCeEEEEECCC----------ccHHHHHHHHHHCCCeEEEEECCCC--H--HHHHhcCCCEEEECCcCcccccCCChh--
Confidence 46999998865 3677889999999999988864321 1 2333 469999999999887642 22
Q ss_pred HHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165 80 KLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT 122 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~ 122 (126)
..+.+++.++|+||||+|||+|++++||++.+.+ ..+|+
T Consensus 74 ----~~~~~~~~~~PvLGIC~G~Qlla~~lGG~V~~~~~~e~G~ 113 (527)
T 3tqi_A 74 ----APAFIFEIGCPVLGICYGMQTMAYQLGGKVNRTAKAEFGH 113 (527)
T ss_dssp ----CCCSTTTSSSCEEEETHHHHHHHHHSSSCBC-----CEEE
T ss_pred ----hHHHHHhcCCCEEEEChHHHHHHHHcCCeEEeCCCccccc
Confidence 2334567799999999999999999999998753 44554
No 15
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=99.70 E-value=2.1e-18 Score=124.59 Aligned_cols=96 Identities=15% Similarity=0.163 Sum_probs=66.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
|+ +||+|++++..+ ...+.++|++.|.++++++ + | +++.++|+||+||+.... +...+. +
T Consensus 1 M~-~~I~iiD~g~~n----------~~si~~al~~~G~~~~v~~---~--~--~~l~~~D~lilPG~g~~~-~~~~~~-~ 60 (211)
T 4gud_A 1 MT-QNVVIIDTGCAN----------ISSVKFAIERLGYAVTISR---D--P--QVVLAADKLFLPGVGTAS-EAMKNL-T 60 (211)
T ss_dssp ---CCEEEECCCCTT----------HHHHHHHHHHTTCCEEEEC---C--H--HHHHHCSEEEECCCSCHH-HHHHHH-H
T ss_pred CC-CEEEEEECCCCh----------HHHHHHHHHHCCCEEEEEC---C--H--HHHhCCCEEEECCCCCHH-HHHHHH-H
Confidence 55 489999987763 3457889999999998764 1 2 356789999999864321 111111 2
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA 116 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~ 116 (126)
..++++.+.+.++|+||||+|||+|++++|+++.+.
T Consensus 61 ~~~~i~~~~~~~~PvlGIClG~QlL~~~~g~~~~~~ 96 (211)
T 4gud_A 61 ERDLIELVKRVEKPLLGICLGMQLLGKLSEEKGQKA 96 (211)
T ss_dssp HTTCHHHHHHCCSCEEEETHHHHTTSSEECCC----
T ss_pred hcChHHHHHHcCCCEEEEchhHhHHHHHhCCccccc
Confidence 234567777789999999999999999999987653
No 16
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase, thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP: c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B* 1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Probab=99.69 E-value=7.8e-17 Score=126.48 Aligned_cols=96 Identities=18% Similarity=0.207 Sum_probs=73.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
+||+|++++.. .++.++|.+.|.++.++..... .... ...++|||||+|||.++.+. ....+
T Consensus 191 ~~V~viD~G~k------------~ni~r~L~~~G~~v~vvp~~~~-~e~i-~~~~~DGliLsGGPgdp~~~----~~~~~ 252 (379)
T 1a9x_B 191 FHVVAYDFGAK------------RNILRMLVDRGCRLTIVPAQTS-AEDV-LKMNPDGIFLSNGPGDPAPC----DYAIT 252 (379)
T ss_dssp EEEEEEESSCC------------HHHHHHHHHTTEEEEEEETTCC-HHHH-HTTCCSEEEECCCSBCSTTC----HHHHH
T ss_pred CEEEEEECCCh------------HHHHHHHHHCCCEEEEEeccCC-HHHH-hhcCCCEEEEeCCCCChHHH----HHHHH
Confidence 58999999664 2367888889999988875321 0000 11369999999999887643 34667
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS 117 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~ 117 (126)
+++++++.++|+||||+|||+|+.++||++.+.+
T Consensus 253 ~Ir~~~~~~~PILGIClG~QLLa~A~GG~v~k~~ 286 (379)
T 1a9x_B 253 AIQKFLETDIPVFGICLGHQLLALASGAKTVKMK 286 (379)
T ss_dssp HHHHHTTSCCCEEEETHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHcCCCEEEECchHHHHHHHhCcEEEecc
Confidence 8888888899999999999999999999998753
No 17
>2ywj_A Glutamine amidotransferase subunit PDXT; uncharacterized conserved protein, structural genomics; 1.90A {Methanocaldococcus jannaschii}
Probab=99.69 E-value=1e-17 Score=118.94 Aligned_cols=90 Identities=19% Similarity=0.189 Sum_probs=64.3
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
|||+||++. |+|.+++ ++|++.|.++.+++. + +.+.++|+||++||+.+++++..+...+.+
T Consensus 1 m~i~vl~~~----------g~~~~~~-~~l~~~G~~~~~~~~-----~--~~~~~~dglil~GG~~~~~~~~~~~~~~~~ 62 (186)
T 2ywj_A 1 MIIGVLAIQ----------GDVEEHE-EAIKKAGYEAKKVKR-----V--EDLEGIDALIIPGGESTAIGKLMKKYGLLE 62 (186)
T ss_dssp CEEEEECSS----------SCCHHHH-HHHHHTTSEEEEECS-----G--GGGTTCSEEEECCSCHHHHHHHHHHTTHHH
T ss_pred CEEEEEecC----------cchHHHH-HHHHHCCCEEEEECC-----h--HHhccCCEEEECCCCchhhhhhhhccCHHH
Confidence 589999763 3455544 788888988877652 1 246789999999998655432222222444
Q ss_pred HHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165 84 LLKQLDSLRKKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
.++ +.++|+||||+|||+|+.++||++.
T Consensus 63 ~i~---~~~~PilGIC~G~Qll~~~~gg~~~ 90 (186)
T 2ywj_A 63 KIK---NSNLPILGTCAGMVLLSKGTGINQI 90 (186)
T ss_dssp HHH---TCCCCEEEETHHHHHHSSCCSSCCC
T ss_pred HHH---hcCCcEEEECHHHHHHHHHhCCCcC
Confidence 444 6789999999999999999999853
No 18
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=99.68 E-value=2.3e-17 Score=134.02 Aligned_cols=102 Identities=14% Similarity=0.228 Sum_probs=76.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCCc-hH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGND-VW 77 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~~-~~ 77 (126)
|..+||+||+++.. |+..+.+.+++.|..++++..... .+++. ++|||||||||.+++++. +|
T Consensus 5 ~~~~~IlIlD~g~~----------~~~~i~r~lr~~G~~~~i~p~~~~----~~~i~~~~~dgiILsGGp~s~~~~~~~~ 70 (525)
T 1gpm_A 5 IHKHRILILDFGSQ----------YTQLVARRVRELGVYCELWAWDVT----EAQIRDFNPSGIILSGGPESTTEENSPR 70 (525)
T ss_dssp TTSSEEEEEECSCT----------THHHHHHHHHHTTCEEEEEESCCC----HHHHHHHCCSEEEECCCSSCTTSTTCCC
T ss_pred CCCCEEEEEECCCc----------cHHHHHHHHHHCCCEEEEEECCCC----HHHHhccCCCEEEECCcCccccccCCcc
Confidence 45678999988654 667788999999999888764321 11233 359999999999887653 44
Q ss_pred HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165 78 ICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT 122 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~ 122 (126)
+. +.+.+.++|+||||+|||+|+.++||++.+.+ ...|+
T Consensus 71 ~~------~~~~~~g~PvLGIC~G~Qlla~~~GG~V~~~~~~e~G~ 110 (525)
T 1gpm_A 71 AP------QYVFEAGVPVFGVCYGMQTMAMQLGGHVEASNEREFGY 110 (525)
T ss_dssp CC------GGGGTSSSCEEEETHHHHHHHHHHTCEEECCSSCEEEE
T ss_pred hH------HHHHHCCCCEEEEChHHHHHHHHcCCEEEeCCCcccce
Confidence 32 34456799999999999999999999998753 45554
No 19
>2w7t_A CTP synthetase, putative cytidine triphosphate synthase; glutaminase domain, trypsanosoma brucei, ligase, acivicin; HET: 5CS; 2.10A {Trypanosoma brucei}
Probab=99.68 E-value=1.7e-17 Score=125.03 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=77.7
Q ss_pred CeEEEE-EcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC------CCCCCcCEEEEcCCCCCCCCCch
Q 033165 4 KKFAVL-LCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD------DDFGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 4 ~ki~Il-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~------~~~~~~d~iii~G~~~~~~~~~~ 76 (126)
.||+|+ +.+ ..+.++|.++...+.++..+.+.+++++.+...++... +.+.++|+|||+||+.+.
T Consensus 9 ~~Iaivg~y~---~~~~dny~S~~~aL~~~g~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~dgiil~GG~~~~----- 80 (273)
T 2w7t_A 9 VRIAFVGKYL---QDAGDTYFSVLQCFEHCQIALQVRLDILYVDSEELEGPNADEARKALLGCDGIFVPGGFGNR----- 80 (273)
T ss_dssp EEEEEEECCH---HHHTTTTHHHHHHHHHHHHHHTCCEEEEEEEGGGGSSTTTHHHHHHHHTCSEEEECCCCTTT-----
T ss_pred CEEEEEeCCC---cCCchHHHHHHHHHHHHHHhcCCceEEeccChhhcccccchhHHHHHhhCCEEEecCCCCCc-----
Confidence 688888 332 24556788899999888878888888887654322211 235689999999997542
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165 77 WICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
......++++.+.+.++|+||||+|||+|+.++||++.
T Consensus 81 ~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~a~Gg~v~ 118 (273)
T 2w7t_A 81 GVDGKCAAAQVARMNNIPYFGVXLGMQVAVIELSRNVV 118 (273)
T ss_dssp THHHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHCCCcEEEECcCHHHHHHHHhCccc
Confidence 12346678888888899999999999999999999984
No 20
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=99.67 E-value=9.1e-18 Score=122.78 Aligned_cols=93 Identities=19% Similarity=0.271 Sum_probs=64.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCC-chHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGN-DVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~-~~~~~~ 80 (126)
+||+||+++.. |...+.+.|++.|.++.++.+... + +++ .++|+||||||+.++++. .+|+
T Consensus 25 ~~I~iiD~g~~----------~~~~i~~~l~~~G~~~~vv~~~~~--~--~~l~~~~~dglil~Gg~~~~~~~~~~~~-- 88 (218)
T 2vpi_A 25 GAVVILDAGAQ----------YGKVIDRRVRELFVQSEIFPLETP--A--FAIKEQGFRAIIISGGPNSVYAEDAPWF-- 88 (218)
T ss_dssp TCEEEEECSTT----------TTHHHHHHHHHTTCCEEEECTTCC--H--HHHHHHTCSEEEEEC---------CCCC--
T ss_pred CeEEEEECCCc----------hHHHHHHHHHHCCCEEEEEECCCC--h--HHHhhcCCCEEEECCCCcccccccchhH--
Confidence 68999998765 455678889999999888875421 1 122 459999999999876542 2332
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccC
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINA 116 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~ 116 (126)
.+.+.+.++|+||||+|||+|+.++||++.+.
T Consensus 89 ----~~~~~~~~~PilGIC~G~Qll~~~~GG~v~~~ 120 (218)
T 2vpi_A 89 ----DPAIFTIGKPVLGICYGMQMMNKVFGGTVHKK 120 (218)
T ss_dssp ----CGGGGTSSCCEEEETHHHHHHHHHTTCCEEEE
T ss_pred ----HHHHHHcCCCEEEEcHHHHHHHHHhCCceEeC
Confidence 22345678999999999999999999999864
No 21
>2abw_A PDX2 protein, glutaminase; PLP-synthase, vitamin B6, malaria, transferase; HET: PG4; 1.62A {Plasmodium falciparum} SCOP: c.23.16.1 PDB: 4ads_G
Probab=99.66 E-value=9.6e-18 Score=122.63 Aligned_cols=96 Identities=19% Similarity=0.191 Sum_probs=67.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC---CCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE---GETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~ 77 (126)
|+++||+|+..... |.+ ..++|++. |.++..++. + +.+.++|+|||+||+.+.++...+
T Consensus 1 ~~~~~I~Il~~~~~----------~~~-~~~~l~~~~~~G~~~~~~~~-----~--~~l~~~dglil~GG~~~~~~~~~~ 62 (227)
T 2abw_A 1 MSEITIGVLSLQGD----------FEP-HINHFIKLQIPSLNIIQVRN-----V--HDLGLCDGLVIPGGESTTVRRCCA 62 (227)
T ss_dssp -CCEEEEEECTTSC----------CHH-HHHHHHTTCCTTEEEEEECS-----H--HHHHTCSEEEECCSCHHHHHHHTT
T ss_pred CCCcEEEEEeCCCC----------cHH-HHHHHHHhccCCeEEEEEcC-----c--cccccCCEEEECCCcHHHHHHHHH
Confidence 77889999977532 222 24566666 766555441 1 245679999999997544332223
Q ss_pred H--HHHHHHHHHHHhc-CCcEEEEchHHHHHHHHhCCccc
Q 033165 78 I--CKLIALLKQLDSL-RKKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 78 ~--~~~~~~i~~~~~~-~~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
. ..+.++|+++.+. ++|+||||+|+|+|++++|+++.
T Consensus 63 ~d~~~~~~~i~~~~~~~g~PilGIC~G~QlL~~~~gg~~~ 102 (227)
T 2abw_A 63 YENDTLYNALVHFIHVLKKPIWGTCAGCILLSKNVENIKL 102 (227)
T ss_dssp HHHHHHHHHHHHHHHTSCCCEEEETHHHHHTEEEEECCCS
T ss_pred HhHHHHHHHHHHHHHhcCCEEEEECHHHHHHHHHhcCCcc
Confidence 2 3467889998899 99999999999999999999763
No 22
>3fij_A LIN1909 protein; 11172J, uncharacterized protein, nysgrc, PSI-II, structural genomics, protein structure initiative; 2.30A {Listeria innocua}
Probab=99.65 E-value=1e-16 Score=119.45 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=62.3
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCC---CCCCCc--hH-------H-HHHHHHHHHHHhcCCc
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCN---DAHGND--VW-------I-CKLIALLKQLDSLRKK 94 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~---~~~~~~--~~-------~-~~~~~~i~~~~~~~~P 94 (126)
.+.+.+.++|....++.+..+. ...+.++++|||||+||+. +.|++. +| . ....++++++++.++|
T Consensus 32 ~~~~~l~~aG~~pv~lp~~~~~-~~~~~l~~~DGlil~GG~~v~P~~yg~~~~~~~~~~~~~rd~~~~~lir~a~~~~~P 110 (254)
T 3fij_A 32 RYVDAIQKVGGFPIALPIDDPS-TAVQAISLVDGLLLTGGQDITPQLYLEEPSQEIGAYFPPRDSYEIALVRAALDAGKP 110 (254)
T ss_dssp HHHHHHHHHTCEEEEECCCCGG-GHHHHHHTCSEEEECCCSCCCGGGGTCCCCTTCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEEEeCCCch-HHHHHHhhCCEEEECCCCCCChhhcCCccCcccCCcChhhhHHHHHHHHHHHHcCCC
Confidence 3556777788887777643221 0011256899999999975 223322 22 1 2366889999999999
Q ss_pred EEEEchHHHHHHHHhCCccccC
Q 033165 95 VLGICFGHQVRAITVFSSHINA 116 (126)
Q Consensus 95 vlGIC~G~Q~la~~~Gg~v~~~ 116 (126)
+||||+|||+|+.++||++.+.
T Consensus 111 iLGIC~G~Qll~~a~Gg~v~~~ 132 (254)
T 3fij_A 111 IFAICRGMQLVNVALGGTLYQD 132 (254)
T ss_dssp EEEETHHHHHHHHHTTCCEESS
T ss_pred EEEECHHHHHHHHHhCCceecc
Confidence 9999999999999999998753
No 23
>3d54_D Phosphoribosylformylglycinamidine synthase 1; alpha-beta structure, ATP-binding, cytoplasm, ligase, nucleotide-binding, purine biosynthesis; HET: CYG ADP; 3.50A {Thermotoga maritima}
Probab=99.65 E-value=2.4e-16 Score=113.55 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=73.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCC----chHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGN----DVWI 78 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~----~~~~ 78 (126)
|+||+|++++..... ..+.++|++.|.++.++... +++.++|+|||+||+....+. ..+.
T Consensus 2 ~~~i~il~~~~~~~~---------~~~~~~l~~~g~~~~~~~~~-------~~~~~~d~lil~Gg~~~~~~~~~~~~~~~ 65 (213)
T 3d54_D 2 KPRACVVVYPGSNCD---------RDAYHALEINGFEPSYVGLD-------DKLDDYELIILPGGFSYGDYLRPGAVAAR 65 (213)
T ss_dssp CCEEEEECCTTEEEH---------HHHHHHHHTTTCEEEEECTT-------CCCSSCSEEEECEECGGGGCSSTTHHHHT
T ss_pred CcEEEEEEcCCCCcc---------HHHHHHHHHCCCEEEEEecC-------CCcccCCEEEECCCCchhhhhcccccccc
Confidence 579999998776421 12467888889888877632 146789999999996432211 1122
Q ss_pred HHHHHHHHHHHhcCCcEEEEchHHHHHHHH--hCCccccCC
Q 033165 79 CKLIALLKQLDSLRKKVLGICFGHQVRAIT--VFSSHINAS 117 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~--~Gg~v~~~~ 117 (126)
..+.++|+++.+.++|++|||+|+|+|+.+ +++++.+.+
T Consensus 66 ~~~~~~l~~~~~~~~pilgIC~G~qlLa~aGll~g~v~~~~ 106 (213)
T 3d54_D 66 EKIAFEIAKAAERGKLIMGICNGFQILIEMGLLKGALLQNS 106 (213)
T ss_dssp STTHHHHHHHHHHTCEEEECHHHHHHHHHHTSSCSEEECCS
T ss_pred HHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCCeecCC
Confidence 446788898888899999999999999999 999988653
No 24
>2ywd_A Glutamine amidotransferase subunit PDXT; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=99.63 E-value=6.4e-17 Score=114.91 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=65.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
+++|+|+..... +.+ +.++|++.|.++.+++.. ++++++|+||++||+....++..|...+.
T Consensus 2 ~p~Igi~~~~~~----------~~~-~~~~l~~~G~~~~~~~~~-------~~l~~~dglil~GG~~~~~~~~~~~~~~~ 63 (191)
T 2ywd_A 2 RGVVGVLALQGD----------FRE-HKEALKRLGIEAKEVRKK-------EHLEGLKALIVPGGESTTIGKLAREYGIE 63 (191)
T ss_dssp -CCEEEECSSSC----------HHH-HHHHHHTTTCCCEEECSG-------GGGTTCSEEEECSSCHHHHHHHHHHTTHH
T ss_pred CcEEEEEecCCc----------hHH-HHHHHHHCCCEEEEeCCh-------hhhccCCEEEECCCChhhhHHhhhhhhHH
Confidence 578999976432 222 567888899988877521 14567999999999522211112233467
Q ss_pred HHHHHHHhcC-CcEEEEchHHHHHHHHhCC
Q 033165 83 ALLKQLDSLR-KKVLGICFGHQVRAITVFS 111 (126)
Q Consensus 83 ~~i~~~~~~~-~PvlGIC~G~Q~la~~~Gg 111 (126)
++++++.+.+ +|+||||+|||+|++++|+
T Consensus 64 ~~i~~~~~~~~~PilGiC~G~Q~l~~~~gg 93 (191)
T 2ywd_A 64 DEVRKRVEEGSLALFGTCAGAIWLAKEIVG 93 (191)
T ss_dssp HHHHHHHHTTCCEEEEETHHHHHHEEEETT
T ss_pred HHHHHHHHCCCCeEEEECHHHHHHHHHhCC
Confidence 8888888889 9999999999999999998
No 25
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=99.61 E-value=3.5e-16 Score=126.52 Aligned_cols=97 Identities=20% Similarity=0.145 Sum_probs=72.6
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC--CcCEEEEcCCCCCCCCCc-hHHHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG--SYDGYVITGSCNDAHGND-VWICKLI 82 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~--~~d~iii~G~~~~~~~~~-~~~~~~~ 82 (126)
|+||+++. +|+..+.+.+++.|...+++..... + +++. ++||||+||||.+++++. +|..
T Consensus 2 i~ilD~g~----------~~~~~i~r~l~~~G~~~~i~p~~~~--~--~~i~~~~~dgiIlsGGp~s~~~~~~~~~~--- 64 (503)
T 2ywb_A 2 VLVLDFGS----------QYTRLIARRLRELRAFSLILPGDAP--L--EEVLKHRPQALILSGGPRSVFDPDAPRPD--- 64 (503)
T ss_dssp EEEEESSC----------TTHHHHHHHHHTTTCCEEEEETTCC--H--HHHHTTCCSEEEECCCSSCSSCTTCCCCC---
T ss_pred EEEEECCC----------cHHHHHHHHHHHCCCEEEEEECCCC--H--HHHHhcCCCEEEECCCCchhccCCCcchH---
Confidence 88998765 4777899999999999888764321 1 1232 469999999999888753 4432
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT 122 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~ 122 (126)
+.+.+.++|+||||+|||+|++++||++.+.+ ...|+
T Consensus 65 ---~~~~~~~~PvLGIC~G~Qlla~~~GG~v~~~~~~e~G~ 102 (503)
T 2ywb_A 65 ---PRLFSSGLPLLGICYGMQLLAQELGGRVERAGRAEYGK 102 (503)
T ss_dssp ---GGGGCSSCCEEEETHHHHHHHHTTTCEEECC---CEEE
T ss_pred ---HHHHhCCCCEEEECHHHHHHHHHhCCeEeeCCCCccce
Confidence 34456799999999999999999999998753 45554
No 26
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=99.61 E-value=3.2e-16 Score=112.56 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=64.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--H
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK--L 81 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~--~ 81 (126)
+||+|++++..+ + +.+.++|++.|.++.+++. + +++.++|+||++|+.. +.+..+|+.+ +
T Consensus 3 ~~I~iid~~~~~---------~-~~~~~~l~~~G~~~~~~~~-----~--~~l~~~d~lil~G~g~-~~~~~~~l~~~~~ 64 (200)
T 1ka9_H 3 MKALLIDYGSGN---------L-RSAAKALEAAGFSVAVAQD-----P--KAHEEADLLVLPGQGH-FGQVMRAFQESGF 64 (200)
T ss_dssp CEEEEECSSCSC---------H-HHHHHHHHHTTCEEEEESS-----T--TSCSSCSEEEECCCSC-HHHHHHTTSSSCT
T ss_pred cEEEEEeCCCcc---------H-HHHHHHHHHCCCeEEEecC-----h--HHcccCCEEEECCCCc-HHHHHHHHHhcCH
Confidence 589999765332 1 2256788889998887652 1 2467899999988532 2122244432 6
Q ss_pred HHHHHHHHhcCCcEEEEchHHHHHHHH---hC
Q 033165 82 IALLKQLDSLRKKVLGICFGHQVRAIT---VF 110 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~G~Q~la~~---~G 110 (126)
.++|+++.+.++|+||||+|+|+|+++ +|
T Consensus 65 ~~~i~~~~~~~~PilGIC~G~Qll~~~~~~~G 96 (200)
T 1ka9_H 65 VERVRRHLERGLPFLGICVGMQVLYEGSEEAP 96 (200)
T ss_dssp HHHHHHHHHTTCCEEECTHHHHTTSSEETTST
T ss_pred HHHHHHHHHcCCeEEEEcHHHHHHHHhccccC
Confidence 788888888999999999999999999 58
No 27
>2iss_D Glutamine amidotransferase subunit PDXT; (beta/alpha)8-barrel, alpha/beta three layer sandwich, lyase transferase; HET: 5RP; 2.90A {Thermotoga maritima}
Probab=99.61 E-value=1.4e-16 Score=115.29 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=65.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
.+||+|++. . +.|.+++ +.|++.|.++.+++.. +++.++|+|||+||+...+++.+|...+.
T Consensus 20 ~~~I~ii~~-~---------~~~~~~~-~~l~~~g~~~~~~~~~-------~~l~~~d~iil~GG~~~~~~~~~~~~~~~ 81 (208)
T 2iss_D 20 HMKIGVLGV-Q---------GDVREHV-EALHKLGVETLIVKLP-------EQLDMVDGLILPGGESTTMIRILKEMDMD 81 (208)
T ss_dssp CCEEEEECS-S---------SCHHHHH-HHHHHTTCEEEEECSG-------GGGGGCSEEEECSSCHHHHHHHHHHTTCH
T ss_pred CcEEEEEEC-C---------CchHHHH-HHHHHCCCEEEEeCCh-------HHHhhCCEEEECCCcHHHHHhhhhhhhHH
Confidence 469999964 1 2344433 5667788887776521 23568999999999543333223444567
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhCCc
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVFSS 112 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~ 112 (126)
++|+++.++++|+||||+|+|+|++++|++
T Consensus 82 ~~i~~~~~~g~PilGIC~G~QlL~~~~gg~ 111 (208)
T 2iss_D 82 EKLVERINNGLPVFATCAGVILLAKRIKNY 111 (208)
T ss_dssp HHHHHHHHTTCCEEEETHHHHHHEEEEC--
T ss_pred HHHHHHHHCCCeEEEECHHHHHHHHHcCCC
Confidence 889998889999999999999999999993
No 28
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=99.60 E-value=6.1e-16 Score=110.93 Aligned_cols=88 Identities=15% Similarity=0.207 Sum_probs=64.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC-----CeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG-----ETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g-----~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
|||+||+++..+. +.+.++|++.| .++.+++. +. + .++|+|||||+. +..+..+|+
T Consensus 1 m~I~iid~~~g~~----------~s~~~~l~~~G~~~~~~~~~~~~~-----~~--~-~~~dglilpG~g-~~~~~~~~l 61 (201)
T 1gpw_B 1 MRIGIISVGPGNI----------MNLYRGVKRASENFEDVSIELVES-----PR--N-DLYDLLFIPGVG-HFGEGMRRL 61 (201)
T ss_dssp CEEEEECCSSSCC----------HHHHHHHHHHSTTBSSCEEEEECS-----CC--S-SCCSEEEECCCS-CSHHHHHHH
T ss_pred CEEEEEecCCchH----------HHHHHHHHHcCCCCCceEEEEECC-----Cc--c-cCCCEEEECCCC-cHHHHHHHH
Confidence 5899998764421 23456777778 78877652 22 3 689999999863 221223566
Q ss_pred HH--HHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 79 CK--LIALLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 79 ~~--~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
.+ +.++|+++.+.++|+||||+|||+|++++|
T Consensus 62 ~~~~~~~~i~~~~~~~~PilGIC~G~Qll~~~~g 95 (201)
T 1gpw_B 62 RENDLIDFVRKHVEDERYVVGVCLGMQLLFEESE 95 (201)
T ss_dssp HHTTCHHHHHHHHHTTCEEEEETHHHHTTSSEET
T ss_pred HhhCHHHHHHHHHHcCCeEEEEChhHHHHHHhhc
Confidence 53 678899988899999999999999999996
No 29
>1l9x_A Gamma-glutamyl hydrolase; 1.60A {Homo sapiens} SCOP: c.23.16.1
Probab=99.58 E-value=9.2e-16 Score=117.65 Aligned_cols=113 Identities=19% Similarity=0.196 Sum_probs=70.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhC-CHH-HHHHHHHhhCCCeEEEEEccCCCCCCC-CCCCCcCEEEEcCCCCCCCCCc--
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYG-GYF-GVFVRMLAEEGETWDVFHVARGEFPDD-DDFGSYDGYVITGSCNDAHGND-- 75 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~-~~~-~~~~~~l~~~g~~~~~~~~~~~~~p~~-~~~~~~d~iii~G~~~~~~~~~-- 75 (126)
|.++.|+|+.+....... ..++ +|. ..+.++|++.|..+.+++...+ .... +.++++|||||+||+.++.+..
T Consensus 28 ~~~P~IGI~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~G~~~~vv~~~~~-~~~i~~~l~~~dglil~GG~~~v~p~~~~ 105 (315)
T 1l9x_A 28 AKKPIIGILMQKCRNKVM-KNYGRYYIAASYVKYLESAGARVVPVRLDLT-EKDYEILFKSINGILFPGGSVDLRRSDYA 105 (315)
T ss_dssp CCCCEEEEECEECCSHHH-HTTCSEEEEHHHHHHHHHTTCEEEEECSSCC-HHHHHHHHHHSSEEEECCCCCCTTTCHHH
T ss_pred CCCCEEEEECCccccccc-ccCcceehHHHHHHHHHHCCCEEEEEecCCC-HHHHHHHHhcCCEEEEeCCCcccChhhhh
Confidence 345789999765443211 1111 111 1356788888999888775321 0000 0135799999999987764431
Q ss_pred hHHHHHHHHHHHHHhc--CCcEEEEchHHHHHHHHhCCcccc
Q 033165 76 VWICKLIALLKQLDSL--RKKVLGICFGHQVRAITVFSSHIN 115 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~--~~PvlGIC~G~Q~la~~~Gg~v~~ 115 (126)
.+...+.+.+++..+. ++|+||||+|||+|+.++||++..
T Consensus 106 ~~~~~l~~~~~~~~~~g~~~PiLGIC~G~Qll~~a~GG~~~~ 147 (315)
T 1l9x_A 106 KVAKIFYNLSIQSFDDGDYFPVWGTCLGFEELSLLISGECLL 147 (315)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCEEEETHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEChHHHHHHHHhCCcccc
Confidence 2223344455554444 599999999999999999998654
No 30
>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}
Probab=99.57 E-value=5.1e-16 Score=129.75 Aligned_cols=100 Identities=21% Similarity=0.309 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEcCCCCCCCCC-chHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVITGSCNDAHGN-DVWIC 79 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~G~~~~~~~~-~~~~~ 79 (126)
..||+||+.+.. |+..+.+.+++.|...+++.... + .+++ .++|||||+|||.+++++ .+|+.
T Consensus 29 ~~~I~VLDfg~q----------~~~liar~lre~Gv~~~ivp~~~---~-~e~i~~~~~dGIILsGGp~s~~~~~~~~~~ 94 (697)
T 2vxo_A 29 EGAVVILDAGAQ----------YGKVIDRRVRELFVQSEIFPLET---P-AFAIKEQGFRAIIISGGPNSVYAEDAPWFD 94 (697)
T ss_dssp CCCEEEEEEC------------CHHHHHHHHHHTTCCEEEEETTC---C-HHHHHHHTCSEEEEEECC-------CCCCC
T ss_pred CCEEEEEECCCc----------hHHHHHHHHHHCCCEEEEEECCC---C-HHHHhhcCCCEEEECCCCCcccCccchhHH
Confidence 468999988764 66678899999999998887532 1 1122 479999999999988753 34432
Q ss_pred HHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccccCC-ccccc
Q 033165 80 KLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHINAS-KIAGT 122 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~~~~-~~~g~ 122 (126)
+.+.+.++|+||||+|||+|++++||++.+.+ ...|+
T Consensus 95 ------~~i~~~g~PvLGIC~G~QlLa~~lGG~v~~~~~~e~G~ 132 (697)
T 2vxo_A 95 ------PAIFTIGKPVLGICYGMQMMNKVFGGTVHKKSVREDGV 132 (697)
T ss_dssp ------GGGTTSSCCEEEEEHHHHHHHHHTTCCBCC-------C
T ss_pred ------HHHHhCCCCEEEECHHHHHHHHHhCCeEeecCCCccce
Confidence 23456789999999999999999999998743 34443
No 31
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=99.54 E-value=1.5e-14 Score=117.09 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=78.3
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----CCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----DDDFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----~~~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
.+|+++-=-. ...++|.|+...+.++..+.+.++++..+...++.. .+.+.++|+||+|||+... ..
T Consensus 294 v~IalVGKY~---~l~DaY~Sv~eAL~hag~~~~~~V~I~wIds~~l~~~~~~~~~~L~~~DgIIlpGG~G~~-----~~ 365 (535)
T 3nva_A 294 INIALVGKYT---KLKDSYISIKEAIYHASAYIGVRPKLIWIESTDLESDTKNLNEILGNVNGIIVLPGFGSR-----GA 365 (535)
T ss_dssp EEEEEEESCT---TSGGGGHHHHHHHHHHHHHTTCEEEEEEEEGGGGCCSSSCCTTTTTSCSEEEECCCCSST-----TH
T ss_pred eEEEEEecCc---CCchhHHHHHHHHHHHHHHcCCCeEEEEecchhccccccchhhhccCCCEEEECCCCCCc-----cH
Confidence 4677774333 345778888888888777788888888766432211 2467899999999997542 23
Q ss_pred HHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165 79 CKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
....++++.+.+.++|+||||+|||+|+.++|+++.
T Consensus 366 ~g~i~~ir~a~~~~~PiLGIClG~Qll~va~Gg~v~ 401 (535)
T 3nva_A 366 EGKIKAIKYAREHNIPFLGICFGFQLSIVEFARDVL 401 (535)
T ss_dssp HHHHHHHHHHHHHTCCEEEETHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHcCCcEEEECcchhHHHHHhhcccc
Confidence 567788899888999999999999999999999984
No 32
>2v4u_A CTP synthase 2; pyrimidine biosynthesis, glutamine amidotransferase, glutaminase domain, 5-OXO-L-norleucine, DON, ligase, phosphoprotein; HET: CYD; 2.3A {Homo sapiens} PDB: 2vkt_A
Probab=99.52 E-value=6.5e-15 Score=111.71 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=46.3
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
+.++|+||||||+.+ ++...+.++++++.+.++|+||||+|||+|+.++||++.
T Consensus 88 l~~~dgiil~GG~~~-----~~~~~~~~~i~~~~~~~~PilGIC~G~Q~l~~a~Gg~v~ 141 (289)
T 2v4u_A 88 LCKADGILVPGGFGI-----RGTLGKLQAISWARTKKIPFLGVXLGMQLAVIEFARNCL 141 (289)
T ss_dssp HHHCSEEEECSCCSS-----TTHHHHHHHHHHHHHTTCCEEEETHHHHHHHHHHHHHHS
T ss_pred HhhCCEEEecCCCCc-----hhHHHHHHHHHHHHHcCCcEEEECccHHHHHHHHhcccc
Confidence 568999999999754 223567788999888899999999999999999999984
No 33
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=99.52 E-value=1e-14 Score=118.93 Aligned_cols=94 Identities=15% Similarity=0.183 Sum_probs=70.2
Q ss_pred HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC-CC-C-CCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCC
Q 033165 17 YVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF-PD-D-DDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRK 93 (126)
Q Consensus 17 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-p~-~-~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~ 93 (126)
.+.++|.+|...+.+++.+.|.++.+......++ |. . +.+.++||||||||+.++. .....++++.+.+.++
T Consensus 311 ~l~D~y~Sv~~aL~~~g~~~g~~v~I~~~d~~~~~~~~~~~~L~~~DGIILpGGfGd~~-----~~g~i~~ir~a~e~~i 385 (550)
T 1vco_A 311 KMPDAYLSLLEALRHAGIKNRARVEVKWVDAESLEAADLEEAFRDVSGILVPGGFGVRG-----IEGKVRAAQYARERKI 385 (550)
T ss_dssp ---CTTHHHHHHHHHHHHHTTEEEEEEEEEGGGC--CCHHHHTTTCSCEEECCCCSSTT-----HHHHHHHHHHHHHTTC
T ss_pred EEEecHHHHHHHHHHHHHHcCCeEEEEEeCccccccchHHHHHhcCCEEEECCCCCCcc-----hhhhHHHHHHHHHCCC
Confidence 3567788888888888888898998886543222 11 0 1357899999999976542 2345678888888899
Q ss_pred cEEEEchHHHHHHHHhCCcccc
Q 033165 94 KVLGICFGHQVRAITVFSSHIN 115 (126)
Q Consensus 94 PvlGIC~G~Q~la~~~Gg~v~~ 115 (126)
|+||||+|||+|+.++|+++..
T Consensus 386 PiLGICLGmQlL~~a~Gg~v~~ 407 (550)
T 1vco_A 386 PYLGICLGLQIAVIEFARNVAG 407 (550)
T ss_dssp CEEEETHHHHHHHHHHHHHTSC
T ss_pred cEEEECcCHHHHHHHhCccccc
Confidence 9999999999999999998764
No 34
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=99.47 E-value=2.6e-14 Score=116.51 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=67.6
Q ss_pred HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC--CCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcE
Q 033165 18 VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP--DDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKV 95 (126)
Q Consensus 18 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p--~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~Pv 95 (126)
+.|+|.+|...+.+.....+.++.++.....++. ..+.+.++||||++||+.++. .....++++.+.+.++|+
T Consensus 301 l~D~y~Si~~aL~~~G~~~~~~V~i~~~d~e~i~~~~~~~l~~~DGIilsGGpg~~~-----~~g~~~~i~~a~~~~~Pi 375 (545)
T 1s1m_A 301 LPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRG-----VEGMITTARFARENNIPY 375 (545)
T ss_dssp SGGGGHHHHHHHHHHHHHHTEEEEEEEEEHHHHHHHCTTTTTTCSEEEECCCCSSTT-----HHHHHHHHHHHHHTTCCE
T ss_pred EEEHHHHHHHHHHHhCcccCCeEEEccCCHHHhhhhhhhhhhcCCEEEECCCCCCcc-----chhhHHHHHHHHHCCCcE
Confidence 4567777777777665555566666665422110 112467899999999986542 245667888888889999
Q ss_pred EEEchHHHHHHHHhCCcccc
Q 033165 96 LGICFGHQVRAITVFSSHIN 115 (126)
Q Consensus 96 lGIC~G~Q~la~~~Gg~v~~ 115 (126)
||||+|||+|+.++|+++.+
T Consensus 376 LGIClG~Qll~va~Gg~v~~ 395 (545)
T 1s1m_A 376 LGICLGMQVALIDYARHVAN 395 (545)
T ss_dssp EEETHHHHHHHHHHHHHHHC
T ss_pred EEECChHHHHHHHhCCceec
Confidence 99999999999999999874
No 35
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=99.46 E-value=6.3e-15 Score=120.47 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=66.4
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHH-
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWIC- 79 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~- 79 (126)
|+|+||+|++++... ...+.++|++.|.++.+++..+. ..+.++|+|||||+.. +.....+..
T Consensus 2 ~~m~~I~Iid~~~g~----------~~~~~~~l~~~G~~~~vv~~~~~-----~~l~~~DglILpGgG~-~~~~~~~l~~ 65 (555)
T 1jvn_A 2 SHMPVVHVIDVESGN----------LQSLTNAIEHLGYEVQLVKSPKD-----FNISGTSRLILPGVGN-YGHFVDNLFN 65 (555)
T ss_dssp CSSCEEEEECCSCSC----------CHHHHHHHHHTTCEEEEESSGGG-----CCSTTCSCEEEEECSC-HHHHHHHHHH
T ss_pred CCCCEEEEEECCCCC----------HHHHHHHHHHCCCEEEEECCccc-----cccccCCEEEECCCCc-hHhHhhhhhh
Confidence 678899999875321 12466788889998887663211 1367899999998532 111122332
Q ss_pred -HHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 80 -KLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 80 -~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
.+.++|+++++.++|+||||+|||+|++++
T Consensus 66 ~~~~~~i~~~~~~g~PiLGIC~G~QlL~~a~ 96 (555)
T 1jvn_A 66 RGFEKPIREYIESGKPIMGIXVGLQALFAGS 96 (555)
T ss_dssp TTCHHHHHHHHHTTCCEEEEEHHHHTTEEEE
T ss_pred ccHHHHHHHHHHcCCcEEEEchhhhhhhhhh
Confidence 256788888889999999999999999998
No 36
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=99.07 E-value=4.3e-10 Score=80.10 Aligned_cols=97 Identities=19% Similarity=0.239 Sum_probs=67.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC----------C-CC--CC--CCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE----------F-PD--DD--DFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----------~-p~--~~--~~~~~d~iii~G~ 67 (126)
++||+||..+.-... ++. ...+.|++.|.+++++.+..+. + ++ .+ +..+||+||||||
T Consensus 23 ~~kV~ill~~g~~~~------e~~-~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG 95 (193)
T 1oi4_A 23 SKKIAVLITDEFEDS------EFT-SPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGG 95 (193)
T ss_dssp CCEEEEECCTTBCTH------HHH-HHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCB
T ss_pred CCEEEEEECCCCCHH------HHH-HHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCC
Confidence 468999988655431 111 2456788889999988765432 0 00 01 2357999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.. + ++......+.++|+++.++++|+.|||.|.|+|+++
T Consensus 96 ~~-~-~~l~~~~~l~~~l~~~~~~gk~i~aIC~G~~lLa~a 134 (193)
T 1oi4_A 96 HS-P-DYLRGDNRFVTFTRDFVNSGKPVFAICHGPQLLISA 134 (193)
T ss_dssp TH-H-HHHTTSHHHHHHHHHHHHTTCCEEEETTTHHHHHHH
T ss_pred cC-H-HHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 42 2 111223568889999999999999999999999996
No 37
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.03 E-value=5.4e-11 Score=86.23 Aligned_cols=100 Identities=15% Similarity=0.063 Sum_probs=68.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHH--
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWIC-- 79 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~-- 79 (126)
.+||+++.+....+ .++.|...+.++|++.|.+++++++...+.+. .+.+.+.|+|+++||.. ..-..++.
T Consensus 27 ~~~i~~Ip~As~~~----~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~--~~l~~~L~~~ 100 (206)
T 3l4e_A 27 GKTVTFIPTASTVE----EVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNT--FFLLQELKRT 100 (206)
T ss_dssp TCEEEEECGGGGGC----SCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCH--HHHHHHHHHH
T ss_pred CCEEEEECCCCCCC----CHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCH--HHHHHHHHHC
Confidence 36899997655421 23457777889999999988877654311000 02467899999999732 22122222
Q ss_pred HHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 80 KLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.+.+.|++.+++++|++|+|.|+|+++..
T Consensus 101 gl~~~l~~~~~~G~p~~G~sAGa~~l~~~ 129 (206)
T 3l4e_A 101 GADKLILEEIAAGKLYIGESAGAVITSPN 129 (206)
T ss_dssp THHHHHHHHHHTTCEEEEETHHHHTTSSB
T ss_pred ChHHHHHHHHHcCCeEEEECHHHHHhccc
Confidence 36788999888999999999999999864
No 38
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=99.00 E-value=6.3e-10 Score=79.24 Aligned_cols=100 Identities=24% Similarity=0.296 Sum_probs=69.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC---------C-CC--CCCC---CCcCEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE---------F-PD--DDDF---GSYDGYVIT 65 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---------~-p~--~~~~---~~~d~iii~ 65 (126)
|.++||+|+..+.-... ++. ...+.|+..|.+++++.+..+. + ++ .++. .+||+|+||
T Consensus 1 mm~~~v~ill~~g~~~~------e~~-~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livp 73 (197)
T 2rk3_A 1 MASKRALVILAKGAEEM------ETV-IPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLP 73 (197)
T ss_dssp -CCCEEEEEECTTCCHH------HHH-HHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEEC
T ss_pred CCCCEEEEEECCCCcHH------HHH-HHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEEC
Confidence 66789999998766532 111 2446788889999988764321 0 10 0123 689999999
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 66 GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 66 G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
||.... .+....+.+.++|+++.++++|+.+||.|.++|+.+
T Consensus 74 GG~~~~-~~l~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 115 (197)
T 2rk3_A 74 GGNLGA-QNLSESAAVKEILKEQENRKGLIATICAGPTALLAH 115 (197)
T ss_dssp CCHHHH-HHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred CCchhH-HHhhhCHHHHHHHHHHHHcCCEEEEECHHHHHHHHC
Confidence 995322 112334568899999999999999999999999986
No 39
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=98.96 E-value=6.3e-10 Score=78.60 Aligned_cols=100 Identities=20% Similarity=0.298 Sum_probs=67.0
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--------------CC--CCCC--CCcCEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--------------PD--DDDF--GSYDGY 62 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------------p~--~~~~--~~~d~i 62 (126)
|.++||+||..+.-... ++.. ..+.|+..+++++++.+..+.. ++ .+++ .+||+|
T Consensus 7 ~~~~~v~il~~~g~~~~------e~~~-~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~l 79 (190)
T 2vrn_A 7 LTGKKIAILAADGVEEI------ELTS-PRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGL 79 (190)
T ss_dssp CTTCEEEEECCTTCBHH------HHHH-HHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEE
T ss_pred CCCCEEEEEeCCCCCHH------HHHH-HHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEE
Confidence 45689999987655432 1112 3467788888888876542210 10 1122 579999
Q ss_pred EEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 63 VITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 63 ii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
|||||..... +......+.++|+++.++++|+.+||.|.++|+++
T Consensus 80 ivpGG~~~~~-~~~~~~~l~~~l~~~~~~gk~i~aiC~G~~~La~a 124 (190)
T 2vrn_A 80 LLPGGTVNPD-KLRLEEGAMKFVRDMYDAGKPIAAICHGPWSLSET 124 (190)
T ss_dssp EECCCTHHHH-HHTTCHHHHHHHHHHHHTTCCEEEC-CTTHHHHHT
T ss_pred EECCCchhHH-HHhhCHHHHHHHHHHHHcCCEEEEECHhHHHHHhC
Confidence 9999963221 11223568899999999999999999999999985
No 40
>3ugj_A Phosphoribosylformylglycinamidine synthase; amidotransferase, glutaminase, thioester intermediate, ligas; HET: ADP; 1.78A {Salmonella enterica subsp} PDB: 1t3t_A* 3ujn_A* 3umm_A*
Probab=98.96 E-value=1.6e-09 Score=95.52 Aligned_cols=95 Identities=17% Similarity=0.166 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCc----hHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGND----VWI 78 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~----~~~ 78 (126)
++||+|+.....+... -+.++|++.|.+..+++..+. ....++++++|+||+|||.+.. |.. .|.
T Consensus 1047 ~pkVaIi~~~G~N~~~---------~~~~A~~~aG~~~~~v~~~dl-~~~~~~l~~~d~lvlPGGfSyg-D~l~~g~~~a 1115 (1303)
T 3ugj_A 1047 RPKVAVLREQGVNSHV---------EMAAAFHRAGFDAIDVHMSDL-LGGRIGLGNFHALVACGGFSYG-DVLGAGEGWA 1115 (1303)
T ss_dssp CCEEEEEECTTCCCHH---------HHHHHHHHTTCEEEEEEHHHH-HTTSCCGGGCSEEEECCSCGGG-GTTSTTHHHH
T ss_pred CCEEEEEecCCcCCHH---------HHHHHHHHhCCceEEEeeccc-ccCcccHhhCCEEEECCCCcch-hhhccchhHH
Confidence 5699999987765421 146788899999887764210 0112367899999999996321 111 232
Q ss_pred ------HHHHHHHHHHH-hcCCcEEEEchHHHHHHHH
Q 033165 79 ------CKLIALLKQLD-SLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 79 ------~~~~~~i~~~~-~~~~PvlGIC~G~Q~la~~ 108 (126)
..+.+.+++++ +.++|+||||.|+|+|+++
T Consensus 1116 ~~~l~~~~l~~~l~~~~~~~g~pvLGICnG~QlL~e~ 1152 (1303)
T 3ugj_A 1116 KSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNL 1152 (1303)
T ss_dssp HHHHTSHHHHHHHHHHHHSSSCEEEEETHHHHHHHTT
T ss_pred HHHHhchhHHHHHHHHHHhCCCcEEEECHHHHHHHHh
Confidence 23455677654 5789999999999999986
No 41
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=98.96 E-value=2.8e-09 Score=77.90 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=69.0
Q ss_pred CCCCeEEEEEc-----CCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC------------------------
Q 033165 1 MGGKKFAVLLC-----AEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP------------------------ 51 (126)
Q Consensus 1 M~~~ki~Il~~-----~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p------------------------ 51 (126)
|.|+||+|+.. +.-.. . ++.. ..+.|++.|++++++.+..+..+
T Consensus 4 ~~m~kv~ill~~~~~~~g~~~-~-----E~~~-p~~~l~~ag~~v~~~s~~g~~~~v~d~~s~~~~~~~~g~~i~~~~~~ 76 (232)
T 1vhq_A 4 ITMKKIGVILSGCGVYDGSEI-H-----EAVL-TLLAISRSGAQAVCFAPDKQQVDVINHLTGEAMTETRNVLIEAARIT 76 (232)
T ss_dssp --CCEEEEECCSBSTTTSBCH-H-----HHHH-HHHHHHHTTCEEEEEECSSBCSCCBCTTTCCBCSCCCBHHHHHTTTT
T ss_pred ccCCeEEEEEccCCCCCCeeH-H-----HHHH-HHHHHHHCCCEEEEEecCCCCCcccccccccchhhhhhhhHHHHHhh
Confidence 34789999988 33321 1 1222 33677888999999886532110
Q ss_pred -----CCCC--CCCcCEEEEcCCCCCC--CCCchH-------HHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC-C
Q 033165 52 -----DDDD--FGSYDGYVITGSCNDA--HGNDVW-------ICKLIALLKQLDSLRKKVLGICFGHQVRAITVF-S 111 (126)
Q Consensus 52 -----~~~~--~~~~d~iii~G~~~~~--~~~~~~-------~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G-g 111 (126)
..++ .++||+|+||||.... ..+.++ ...+.++|+++.++++|+.+||.|.++|+.++. |
T Consensus 77 ~~~~~~l~~~~~~~~D~livpGG~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~aL~~G 153 (232)
T 1vhq_A 77 RGEIRPLAQADAAELDALIVPGGFGAAKNLSNFASLGSECTVDRELKALAQAMHQAGKPLGFMCIAPAMLPKIFDFP 153 (232)
T ss_dssp TTCCEEGGGCCGGGCSEEEECCSTHHHHTSBCHHHHGGGCCBCHHHHHHHHHHHHTTCCEEEETTGGGGHHHHCSSC
T ss_pred hcCCCCHHHcCcccCCEEEECCCcchHHHHhhhhccccccccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHHhcCC
Confidence 0012 3579999999995431 111111 356888999999999999999999999999976 5
No 42
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=98.96 E-value=8.7e-11 Score=86.21 Aligned_cols=98 Identities=13% Similarity=0.074 Sum_probs=66.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH--
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK-- 80 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~-- 80 (126)
.+||+|+.+...... ++.|...+.+.|++.|.++..++..++ + .+.+.++|+|+++||.. ..-..++.+
T Consensus 31 ~~~i~iI~~a~~~~~----~~~~~~~~~~al~~lG~~~~~v~~~~d--~-~~~l~~ad~I~lpGG~~--~~~~~~l~~~g 101 (229)
T 1fy2_A 31 RRSAVFIPFAGVTQT----WDEYTDKTAEVLAPLGVNVTGIHRVAD--P-LAAIEKAEIIIVGGGNT--FQLLKESRERG 101 (229)
T ss_dssp CCEEEEECTTCCSSC----HHHHHHHHHHHHGGGTCEEEETTSSSC--H-HHHHHHCSEEEECCSCH--HHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCC----HHHHHHHHHHHHHHCCCEEEEEecccc--H-HHHHhcCCEEEECCCcH--HHHHHHHHHCC
Confidence 369999988752211 224666778899999987665543211 1 13567899999999732 111122222
Q ss_pred HHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 81 LIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
+.+.|++.+++++|++|+|.|+|+|+...
T Consensus 102 l~~~l~~~~~~G~p~~G~sAG~~~l~~~~ 130 (229)
T 1fy2_A 102 LLAPMADRVKRGALYIGWSAGANLACPTI 130 (229)
T ss_dssp CHHHHHHHHHTTCEEEEETHHHHHTSSBS
T ss_pred hHHHHHHHHHcCCEEEEECHHHHhhcccc
Confidence 66788888888999999999999998854
No 43
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=98.92 E-value=7.3e-09 Score=74.78 Aligned_cols=98 Identities=17% Similarity=0.114 Sum_probs=67.1
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh--------hCCCeEEEEEccCCCC---------CC--CCCC--CCc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA--------EEGETWDVFHVARGEF---------PD--DDDF--GSY 59 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~--------~~g~~~~~~~~~~~~~---------p~--~~~~--~~~ 59 (126)
|.|+||+|+-.+.-... ++.. ..+.|+ +.+.+++++.+..+.. ++ .+++ .+|
T Consensus 3 m~m~~v~ill~~g~~~~------e~~~-~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~ 75 (212)
T 3efe_A 3 MQTKKAFLYVFNTMSDW------EYGY-LIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESK 75 (212)
T ss_dssp --CCCEEEEECTTCCTT------TTHH-HHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTT
T ss_pred CcccEEEEEECCCccHH------HHHH-HHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCC
Confidence 78899999998876542 2222 335565 5678888887643211 10 1122 389
Q ss_pred CEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 60 DGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 60 d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
|.|+||||.... ......+.++|+++.++++++.+||-|..+|+++
T Consensus 76 D~livpGG~~~~---~~~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 121 (212)
T 3efe_A 76 DLLILPGGTTWS---EEIHQPILERIGQALKIGTIVAAICGATDALANM 121 (212)
T ss_dssp CEEEECCCSCTT---SGGGHHHHHHHHHHHHHTCEEEEETHHHHHHHHT
T ss_pred CEEEECCCCccc---cccCHHHHHHHHHHHHCCCEEEEEcHHHHHHHHc
Confidence 999999996422 2223568889999999999999999999999985
No 44
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=98.89 E-value=1.4e-08 Score=73.25 Aligned_cols=97 Identities=14% Similarity=0.038 Sum_probs=65.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCC-----C--C-CC--CCCC-CCcCEEEEcCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARG-----E--F-PD--DDDF-GSYDGYVITGSC 68 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~-----~--~-p~--~~~~-~~~d~iii~G~~ 68 (126)
|.|+||+|+-.+.-... ++.. ..+.|++. +.+++++.+..+ . + ++ .+++ .+||.|+||||.
T Consensus 1 M~m~kV~ill~~g~~~~------E~~~-~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~ 73 (206)
T 3f5d_A 1 MSLKKALFLILDQYADW------EGVY-LASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGD 73 (206)
T ss_dssp --CEEEEEECCSSBCTT------TSHH-HHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBS
T ss_pred CCccEEEEEEcCCCcHH------HHHH-HHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCC
Confidence 88999999988765431 1222 34566665 888887765421 0 0 00 1122 479999999997
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 69 NDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.... ..+.+.++|+++.++++++.+||-|.++|+.+
T Consensus 74 ~~~~----~~~~l~~~l~~~~~~gk~iaaiC~G~~~La~a 109 (206)
T 3f5d_A 74 SWSN----DNKKLLHFVKTAFQKNIPIAAICGAVDFLAKN 109 (206)
T ss_dssp CCCC----CCHHHHHHHHHHHHTTCCEEEETHHHHHHHHT
T ss_pred Chhh----cCHHHHHHHHHHHHcCCEEEEECHHHHHHHHc
Confidence 4322 23568889999999999999999999999985
No 45
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=98.87 E-value=3.5e-09 Score=73.38 Aligned_cols=97 Identities=19% Similarity=0.214 Sum_probs=66.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----------CCCC--CCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----------DDDF--GSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----------~~~~--~~~d~iii~G~~~ 69 (126)
.+||+|+-.+.-... ++. ...+.|+..|.+++++.+..+.... .+++ .+||+|+||||..
T Consensus 2 ~~ki~il~~~g~~~~------e~~-~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~ 74 (168)
T 3l18_A 2 SMKVLFLSADGFEDL------ELI-YPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKA 74 (168)
T ss_dssp CCEEEEECCTTBCHH------HHH-HHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSH
T ss_pred CcEEEEEeCCCccHH------HHH-HHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcC
Confidence 479999988765432 112 2446778889999888764211100 1122 3699999999963
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+ +.......+.++++++.++++|+.+||.|.++|+++
T Consensus 75 -~-~~~~~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 111 (168)
T 3l18_A 75 -P-EIVRLNEKAVMITRRMFEDDKPVASICHGPQILISA 111 (168)
T ss_dssp -H-HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred -H-HHhccCHHHHHHHHHHHHCCCEEEEECHhHHHHHHC
Confidence 2 111223567889999999999999999999999986
No 46
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=98.84 E-value=5.3e-09 Score=75.04 Aligned_cols=98 Identities=21% Similarity=0.155 Sum_probs=68.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC---C---------CC--CC--CCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE---F---------PD--DD--DFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---~---------p~--~~--~~~~~d~iii~G 66 (126)
++||+|+..+.-... ++.. ..+.|+..|++++++.+..+. . ++ .+ +..+||+|||||
T Consensus 2 ~~kV~ill~~g~~~~------e~~~-~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpG 74 (205)
T 2ab0_A 2 SASALVCLAPGSEET------EAVT-TIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPG 74 (205)
T ss_dssp CCEEEEEECTTCCHH------HHHH-HHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECC
T ss_pred CcEEEEEEcCCCcHH------HHHH-HHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECC
Confidence 469999998766432 1122 346788889999988765321 0 10 01 235799999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH-HHHHHH
Q 033165 67 SCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH-QVRAIT 108 (126)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~-Q~la~~ 108 (126)
|...+ .+......+.++|+++.++++|+.+||.|. ++|+.+
T Consensus 75 G~~~~-~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~~~lLa~a 116 (205)
T 2ab0_A 75 GIKGA-ECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPH 116 (205)
T ss_dssp CHHHH-HHHHHCHHHHHHHHHHHHTTCEEEEETHHHHHHTTTT
T ss_pred CcccH-HHhccCHHHHHHHHHHHHcCCEEEEECHhHHHHHHHC
Confidence 95322 112334568899999999999999999999 999975
No 47
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=98.77 E-value=1.6e-08 Score=74.80 Aligned_cols=105 Identities=12% Similarity=0.088 Sum_probs=67.7
Q ss_pred CCCCeEEEEEcCCCchHH--HHhhC----CHHHHHHHHHhhCCCeEEEEEccCCCCCC----------------------
Q 033165 1 MGGKKFAVLLCAEDSEYV--KKKYG----GYFGVFVRMLAEEGETWDVFHVARGEFPD---------------------- 52 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~--~~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---------------------- 52 (126)
|.|+||+|+.++...... -..-| ++.. ..+.|++.|++++++.+.... +.
T Consensus 1 m~m~kvlivlt~~~~~~~~~g~~tG~~~~E~~~-p~~~l~~aG~~V~iaS~~g~~-~~d~~s~~~~~~~~~~~~~~~~~~ 78 (244)
T 3kkl_A 1 MTPKRALISLTSYHGPFYKDGAKTGVFVVEILR-SFDTFEKHGFEVDFVSETGGF-GWDEHYLPKSFIGGEDKMNFETKN 78 (244)
T ss_dssp --CCEEEEECCCCCCCCSTTSCCCCBCHHHHHH-HHHHHHTTTCEEEEEESSSCC-CBCTTC------------------
T ss_pred CCCCEEEEEECCCCcccCCCCCcCcccHHHHHH-HHHHHHHCCCEEEEEeCCCCC-CcCCccccccccCHHHHHHHHHhh
Confidence 899999999997421000 00001 1222 236778899999998865221 10
Q ss_pred ------------CC--CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 53 ------------DD--DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 53 ------------~~--~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.+ +.++||+|+||||.... .+......+.++++++.++++|+.+||.|..+|+.+
T Consensus 79 ~~~~~~l~~~~~l~~v~~~~yD~l~vpGG~~~~-~~l~~~~~l~~~l~~~~~~gk~iaaIC~G~~~La~a 147 (244)
T 3kkl_A 79 SAFNKALARIKTANEVNASDYKVFFASAGHGAL-FDYPKAKNLQDIASKIYANGGVIAAICHGPLLFDGL 147 (244)
T ss_dssp --CHHHHHTCEEGGGCCGGGCSEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHHHHhcCCCChHHCCHhhCCEEEEcCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEECHHHHHHHHh
Confidence 00 23579999999996432 112223567889999999999999999999999987
No 48
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=98.75 E-value=7.6e-09 Score=76.14 Aligned_cols=106 Identities=13% Similarity=0.121 Sum_probs=67.4
Q ss_pred CCCCeEEEEEcCCCchHHH--HhhC----CHHHHHHHHHhhCCCeEEEEEccCCC-C-----------------------
Q 033165 1 MGGKKFAVLLCAEDSEYVK--KKYG----GYFGVFVRMLAEEGETWDVFHVARGE-F----------------------- 50 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~--~~~~----~~~~~~~~~l~~~g~~~~~~~~~~~~-~----------------------- 50 (126)
|.|+||+|+-.+....... ..-| ++.. ..+.|++.|++++++.+..+. .
T Consensus 1 m~m~kvLivls~~~~~~~~~~~~~G~~~~E~~~-p~~vl~~ag~~v~~~s~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~ 79 (243)
T 1rw7_A 1 MAPKKVLLALTSYNDVFYSDGAKTGVFVVEALH-PFNTFRKEGFEVDFVSETGKFGWDEHSLAKDFLNGQDETDFKNKDS 79 (243)
T ss_dssp -CCCEEEEECCCCCCBCSTTSCBCCBCHHHHHH-HHHHHHHTTCEEEEECSSSCCCBCGGGGSTTTSCHHHHHHHHCTTS
T ss_pred CCCceEEEEECCCCcccCCCCCCCccCHHHHHH-HHHHHHHCCCEEEEECCCCCCCcCcccccccccChHHHHHHHhhhH
Confidence 7889999999753200000 0000 1222 236678889999988764321 0
Q ss_pred -------C--CCCC--CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 51 -------P--DDDD--FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 51 -------p--~~~~--~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+ ..++ .++||+|+|+||.....+ ....+.+.++|+++.++++||.+||.|..+|+.+
T Consensus 80 ~~g~~l~~~~~l~~v~~~~~D~livpGG~~~~~~-l~~~~~l~~~l~~~~~~gk~vaaIC~G~~~La~a 147 (243)
T 1rw7_A 80 DFNKTLAKIKTPKEVNADDYQIFFASAGHGTLFD-YPKAKDLQDIASEIYANGGVVAAVCHGPAIFDGL 147 (243)
T ss_dssp HHHHHHHTCBCGGGCCGGGEEEEEECCSTTHHHH-GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred HHHhhhccCCChHHCCHhhCcEEEECCCCCchhh-cccCHHHHHHHHHHHHcCCEEEEECCCHHHHHhc
Confidence 0 0111 347999999999643211 2223568889999999999999999999999986
No 49
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=98.75 E-value=3.3e-08 Score=69.86 Aligned_cols=97 Identities=18% Similarity=0.136 Sum_probs=66.3
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCCC-----------CCC--CCCcCEEEEcCCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFPD-----------DDD--FGSYDGYVITGSCN 69 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p~-----------~~~--~~~~d~iii~G~~~ 69 (126)
+||+|+..+.-... ++. ...+.|++.|.+++++.+.. ..... .++ ..+||+|+||||..
T Consensus 6 kkv~ill~~g~~~~------e~~-~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~ 78 (190)
T 4e08_A 6 KSALVILAPGAEEM------EFI-IAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLG 78 (190)
T ss_dssp CEEEEEECTTCCHH------HHH-HHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHH
T ss_pred cEEEEEECCCchHH------HHH-HHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCCh
Confidence 58999988665432 111 23477888999999988754 21100 111 24799999999932
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.. .+......+.++|+++.++++|+.+||.|.++|+++
T Consensus 79 ~~-~~~~~~~~~~~~l~~~~~~~k~i~aiC~G~~~La~a 116 (190)
T 4e08_A 79 GS-NAMGESSLVGDLLRSQESGGGLIAAICAAPTVLAKH 116 (190)
T ss_dssp HH-HHHHHCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred HH-HHhhhCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 11 111223567889999999999999999999999985
No 50
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=98.75 E-value=9.8e-09 Score=72.61 Aligned_cols=76 Identities=21% Similarity=0.110 Sum_probs=54.9
Q ss_pred HHHhhCCCeEEEEEccCCCC---------CC----CCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEE
Q 033165 31 RMLAEEGETWDVFHVARGEF---------PD----DDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 31 ~~l~~~g~~~~~~~~~~~~~---------p~----~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
+.|++.|++++++.+..+.. ++ ..+..+||+|+||||+... +....+.+.++++++.++++|+.+
T Consensus 29 ~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~--~l~~~~~~~~~l~~~~~~~k~iaa 106 (177)
T 4hcj_A 29 KIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCI--TLWDDWRTQGLAKLFLDNQKIVAG 106 (177)
T ss_dssp HHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGG--GGTTCHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHH--HHhhCHHHHHHHHHHHHhCCEEEE
Confidence 67888999998887542110 10 1134689999999996421 111125678899999999999999
Q ss_pred EchHHHHHHHH
Q 033165 98 ICFGHQVRAIT 108 (126)
Q Consensus 98 IC~G~Q~la~~ 108 (126)
||.|.++|+.+
T Consensus 107 IC~g~~~La~a 117 (177)
T 4hcj_A 107 IGSGVVIMANA 117 (177)
T ss_dssp ETTHHHHHHHT
T ss_pred ecccHHHHHHC
Confidence 99999999985
No 51
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=98.69 E-value=7.8e-08 Score=68.91 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=62.5
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC------CCeEEEEEccCCCC---------C-CCCC--CCCcCEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE------GETWDVFHVARGEF---------P-DDDD--FGSYDGY 62 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~------g~~~~~~~~~~~~~---------p-~~~~--~~~~d~i 62 (126)
|.++||+|+-.+.-...- +.. ..+.|+.. +++++++.+..+.. + ..++ ..+||.|
T Consensus 3 ~~~~~v~ill~~g~~~~e------~~~-~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~l 75 (202)
T 3gra_A 3 LAPYRVDFILLEHFSMAS------FTV-AMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLL 75 (202)
T ss_dssp --CEEEEEEECTTBCHHH------HHH-HHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEE
T ss_pred CCcEEEEEEEeCCCCHHH------HHH-HHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEE
Confidence 446799999987765421 111 22344332 26666665532110 0 0112 4679999
Q ss_pred EEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 63 VITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 63 ii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
|||||...... . +.+.++|+++.++++++.+||-|..+|+++
T Consensus 76 ivpGG~~~~~~--~--~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 117 (202)
T 3gra_A 76 VVCGGLRTPLK--Y--PELDRLLNDCAAHGMALGGLWNGAWFLGRA 117 (202)
T ss_dssp EEECCTTCCSC--C--TTHHHHHHHHHHHTCEEEEETTHHHHHHHH
T ss_pred EEeCCCchhhc--c--HHHHHHHHHHHhhCCEEEEECHHHHHHHHc
Confidence 99999654322 2 568889999999999999999999999986
No 52
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=98.67 E-value=9.6e-08 Score=70.62 Aligned_cols=100 Identities=16% Similarity=0.200 Sum_probs=65.6
Q ss_pred CCeEEEEEc-----CCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC--------------------------
Q 033165 3 GKKFAVLLC-----AEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP-------------------------- 51 (126)
Q Consensus 3 ~~ki~Il~~-----~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p-------------------------- 51 (126)
++||+|+-. +.-.. . ++.. ..+.|++.|++++++.+..+..+
T Consensus 23 ~kkV~ill~~~~~~dG~e~-~-----E~~~-p~~vL~~aG~~V~~~S~~~g~~~~~~~~~g~~v~~s~g~~v~~d~~~~~ 95 (242)
T 3l3b_A 23 ALNSAVILAGCGHMDGSEI-R-----EAVL-VMLELDRHNVNFKCFAPNKNQKQVVDHKKKESVGEVRNILVESARIARG 95 (242)
T ss_dssp -CEEEEECCCSSTTTSCCH-H-----HHHH-HHHHHHHTTCEEEEEECSSBCSCEEETTTTEEESCCCBHHHHHHHHTTT
T ss_pred cCEEEEEEecCCCCCCeeH-H-----HHHH-HHHHHHHCCCEEEEEecCCCcccccccccCccccccCCeEEecchhccc
Confidence 379999987 33221 1 1222 23677889999998876432100
Q ss_pred ---CCCC--CCCcCEEEEcCCCCCC-----C-----CCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 52 ---DDDD--FGSYDGYVITGSCNDA-----H-----GNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 52 ---~~~~--~~~~d~iii~G~~~~~-----~-----~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
..++ .++||+||||||.... + +.....+.+.++++++.++++|+.+||.|.++|+.+.
T Consensus 96 ~~~~l~dv~~~~~D~livPGG~~~~~~L~~~~~~~~~~~~~~~~l~~~lr~~~~~gk~IaaIC~G~~~La~ag 168 (242)
T 3l3b_A 96 SVYDIEQIRVEEFDMLVIPGGYGVAKNFSNLFDEDKENDYILPEFKNAVREFYNAKKPIGAVCISPAVVVALL 168 (242)
T ss_dssp CEEEGGGCCGGGCSEEEECCCHHHHHHHBSTTSCC--CCCBCHHHHHHHHHHHHTTCCEEEETTHHHHHHHHH
T ss_pred cCCChHHCCcccCCEEEEcCCcchhhhhhhhhccccccccCCHHHHHHHHHHHHcCCEEEEECHHHHHHHHhC
Confidence 0112 3579999999995321 0 0011225678899999999999999999999999976
No 53
>3er6_A Putative transcriptional regulator protein; structural genomics, unknown function, DNA-binding, transcription regulation, PSI-2; 1.90A {Vibrio parahaemolyticus}
Probab=98.66 E-value=3e-08 Score=71.42 Aligned_cols=101 Identities=15% Similarity=0.066 Sum_probs=62.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-------CCCeEEEEEccCCCC---------C--CCCCCCCcCEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-------EGETWDVFHVARGEF---------P--DDDDFGSYDGY 62 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-------~g~~~~~~~~~~~~~---------p--~~~~~~~~d~i 62 (126)
|.++||+|+-.+.-...- +.. ..+.|+. .+++++++....... + ..+++.+||.|
T Consensus 6 ~~~~~v~ill~~g~~~~e------~~~-~~d~l~~a~~~~~~~~~~v~~vs~~~~~v~~~~G~~v~~d~~~~~~~~~D~l 78 (209)
T 3er6_A 6 KKNLRVVALAPTGRYFAS------IIS-SLEILETAAEFAEFQGFMTHVVTPNNRPLIGRGGISVQPTAQWQSFDFTNIL 78 (209)
T ss_dssp -CCEEEEEECCCTTSCHH------HHH-HHHHHHHHHHHTTCSCEEEEEECTTSSCEEETTTEEEECSSCGGGCSCCSEE
T ss_pred CCCeEEEEEEeCCCCHHH------HHH-HHHHHHHHHhhcCCCCcEEEEEeCCCCceecCCCeEEeCCcCccccCCCCEE
Confidence 557899999887665321 111 2233332 235666665432110 0 11235689999
Q ss_pred EEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 63 VITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 63 ii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
|||||...........+.+.++|+++.++++++.+||-|..+|+++
T Consensus 79 ivpGg~~~~~~~~~~~~~l~~~l~~~~~~g~~iaaIC~G~~~La~a 124 (209)
T 3er6_A 79 IIGSIGDPLESLDKIDPALFDWIRELHLKGSKIVAIDTGIFVVAKA 124 (209)
T ss_dssp EECCCSCHHHHGGGSCHHHHHHHHHHHHTTCEEEEETTHHHHHHHH
T ss_pred EECCCCCchhhhccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 9999963211000112567889999999999999999999999986
No 54
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=98.65 E-value=5.1e-08 Score=68.80 Aligned_cols=96 Identities=20% Similarity=0.170 Sum_probs=64.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCC---------CC--CCCC--CCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEF---------PD--DDDF--GSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~---------p~--~~~~--~~~d~iii~G~~ 68 (126)
|+||+|+-.+.-... ++.. ..+.|++ .+.+++++.+..+.. ++ .++. .+||+|+||||.
T Consensus 1 m~~i~ill~~g~~~~------e~~~-~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~ 73 (188)
T 2fex_A 1 MTRIAIALAQDFADW------EPAL-LAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGL 73 (188)
T ss_dssp CCEEEEECCTTBCTT------SSHH-HHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBS
T ss_pred CcEEEEEeCCCchHH------HHHH-HHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCC
Confidence 479999987654421 2333 3466777 889999887643211 10 0122 379999999995
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 69 NDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
..... ....+.++|+++.++++++.+||.|.++|+.+
T Consensus 74 ~~~~~---~~~~l~~~l~~~~~~~k~i~aiC~G~~~La~a 110 (188)
T 2fex_A 74 SWEKG---TAADLGGLVKRFRDRDRLVAGICAAASALGGT 110 (188)
T ss_dssp HHHHT---CCCCCHHHHHHHHHTTCEEEEETHHHHHHHHT
T ss_pred ccccc---ccHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 31111 11346678888888999999999999999986
No 55
>3cne_A Putative protease I; structural genomics, PSI-2, MCSG, protein struct initiative, midwest center for structural genomics; HET: FMN; 1.99A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.63 E-value=1.2e-07 Score=65.99 Aligned_cols=97 Identities=23% Similarity=0.307 Sum_probs=62.3
Q ss_pred CeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CC---------CC--CCC----CCCcCEEEEcC
Q 033165 4 KKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EF---------PD--DDD----FGSYDGYVITG 66 (126)
Q Consensus 4 ~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~---------p~--~~~----~~~~d~iii~G 66 (126)
+||+|+..+.... .+.+. .+++.+.+++++++.+..+ .. ++ .++ ..+||.||+||
T Consensus 3 ~~v~ill~~~~~g~~~~~~--------~e~~~~~~~~v~~vs~~~~~~v~~~~g~~v~~d~~~~~~~~~~~~~D~livpG 74 (175)
T 3cne_A 3 KKVAVLAVNPVNGCGLFQY--------LEAFFENGISYKVFAVSDTKEIKTNSGMVLIVDDVIANLKGHEDEFDALVFSC 74 (175)
T ss_dssp CEEEEEECSSBCHHHHHHH--------HHHHHHTTCEEEEEESSSSSEEEBTTSCEEECSEEGGGGTTCGGGCSEEEEEC
T ss_pred cEEEEEEecCcCCCccchh--------hheeeeCCCEEEEEECCCCCceecCCCeEEEeccCHHHhccCcccCCEEEECC
Confidence 5899998872111 00000 1122267888888876521 00 00 112 36799999999
Q ss_pred C--CCCCCC--CchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 67 S--CNDAHG--NDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 67 ~--~~~~~~--~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
| ...+.. +.+....+.++|+++.++++|+.+||.|.++|+++
T Consensus 75 G~~~~~~~~l~~~~~~~~~~~~l~~~~~~gk~i~aiC~G~~~La~a 120 (175)
T 3cne_A 75 GDAVPVFQQYANQPYNVDLMEVIKTFGEKGKMMIGHCAGAMMFDFT 120 (175)
T ss_dssp CTTGGGGGGCTTCHHHHHHHHHHHHHHHTTCEEEEETTHHHHHHHT
T ss_pred CcCcccHHHHhhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHC
Confidence 9 422211 12356778899999999999999999999999986
No 56
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=98.59 E-value=3.4e-07 Score=76.28 Aligned_cols=99 Identities=12% Similarity=0.077 Sum_probs=69.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-----CCCCCCCCCcCEEEEcCCCCCCC-----
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-----FPDDDDFGSYDGYVITGSCNDAH----- 72 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----~p~~~~~~~~d~iii~G~~~~~~----- 72 (126)
.+||+||-.+...+..+ + ....+.|++.|.+++++.+..++ +.. .+...||+|||+||..+..
T Consensus 537 grKVaILvadG~fE~~E-----l-~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~-~~s~~fDAVvlPGG~~~~~~~~~~ 609 (688)
T 3ej6_A 537 TLRVGVLSTTKGGSLDK-----A-KALKEQLEKDGLKVTVIAEYLASGVDQTYSA-ADATAFDAVVVAEGAERVFSGKGA 609 (688)
T ss_dssp TCEEEEECCSSSSHHHH-----H-HHHHHHHHHTTCEEEEEESSCCTTCCEETTT-CCGGGCSEEEECTTCCTTTSTTTT
T ss_pred CCEEEEEccCCCccHHH-----H-HHHHHHHHHCCCEEEEEeCCCCCCcccCccc-CChhcCcEEEECCCcccccccccc
Confidence 57999998876223221 1 12557889999999999874321 111 1335899999999975421
Q ss_pred -CCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 73 -GNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 73 -~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+......+..++++++.+.+|||.+||-|-|+|..+
T Consensus 610 ~d~Lr~~~~a~~fV~e~~~hgKpIAAIchgp~lL~~A 646 (688)
T 3ej6_A 610 MSPLFPAGRPSQILTDGYRWGKPVAAVGSAKKALQSI 646 (688)
T ss_dssp CCTTSCTTHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred hhhhccCHHHHHHHHHHHHcCCEEEEeCccHHHHHHc
Confidence 222223467789999999999999999999999885
No 57
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=98.59 E-value=6.6e-08 Score=69.83 Aligned_cols=98 Identities=14% Similarity=0.126 Sum_probs=65.4
Q ss_pred CeEEEEEcCCC---------chHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----------------------
Q 033165 4 KKFAVLLCAED---------SEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---------------------- 52 (126)
Q Consensus 4 ~ki~Il~~~~~---------~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---------------------- 52 (126)
+||+|+-.+.. .... ++.. ..+.|++.|++++++.+..+..+.
T Consensus 6 ~kv~ill~~~~~~~~~~~~G~~~~-----e~~~-p~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~~~~~~~~~~~~i~~~ 79 (224)
T 1u9c_A 6 KRVLMVVTNHTTITDDHKTGLWLE-----EFAV-PYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHT 79 (224)
T ss_dssp CEEEEEECCCCEEETTEECCBCHH-----HHHH-HHHHHHHTTCEEEEEESSCBCCCBCGGGSSSCCGGGHHHHHHTTSB
T ss_pred ceEEEEECCcccccCCCCCceeHH-----HHHH-HHHHHHHCCCeEEEECCCCCccccCccccccHHHHHhhhhHhhcCC
Confidence 68999988422 1111 1222 346778889999998765322110
Q ss_pred --CCC--CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 53 --DDD--FGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 53 --~~~--~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.++ ..+||+|+|+||.....+ ......+.++|+++.++++||.+||.|.++|+.+
T Consensus 80 ~~l~~~~~~~~D~livpGG~~~~~~-l~~~~~l~~~l~~~~~~~k~iaaiC~G~~~La~a 138 (224)
T 1u9c_A 80 ARLSKDDAHGFDAIFLPGGHGTMFD-FPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNA 138 (224)
T ss_dssp EECCGGGGSSCSEEEECCCTTHHHH-STTCHHHHHHHHHHHHTTCEEEEETTGGGGGTTC
T ss_pred CChHHcChhhCCEEEECCCcchHHH-hhcCHHHHHHHHHHHHCCCEEEEEChHHHHHHHc
Confidence 012 247999999999643211 1123568889999999999999999999999986
No 58
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=98.55 E-value=9.4e-08 Score=70.85 Aligned_cols=104 Identities=12% Similarity=0.012 Sum_probs=67.2
Q ss_pred CCeEEEEEcCCCchHHH--HhhCC----HHHHHHHHHhhCCCeEEEEEccCCCCC-------------------------
Q 033165 3 GKKFAVLLCAEDSEYVK--KKYGG----YFGVFVRMLAEEGETWDVFHVARGEFP------------------------- 51 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~--~~~~~----~~~~~~~~l~~~g~~~~~~~~~~~~~p------------------------- 51 (126)
|+||+|+.++....... ..-|- +.. -.+.|++.|+++++..+......
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~-p~~~l~~aG~~V~~aSp~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~ 87 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALH-PFNELTAAGFEVDVASETGTFGWDEHSLTQEYLSKEDEKVLHSEHNHF 87 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHH-HHHHHHHTTCEEEEEESSSCCCBCSGGGSGGGCCHHHHHHHTCSSCHH
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHH-HHHHHHHCCCEEEEEeCCCCcccCcccccccccCHHHHHHHHhhhHHH
Confidence 58999999874210000 00011 111 23678899999999887422100
Q ss_pred -------C--CC--CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 52 -------D--DD--DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 52 -------~--~~--~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
. .+ +.++||+|+|+||.... .+......+.++++++.++++||.+||.|.++|+.+
T Consensus 88 ~~~l~~~~~~l~~v~~~~yD~l~ipGG~g~~-~~l~~~~~l~~~l~~~~~~gk~iaaIC~Gp~~La~a 154 (247)
T 3n7t_A 88 MEKMNKQVFKAGDLAPHDYGLMFVCGGHGAL-YDFPHAKHLQNIAQDIYKRGGVIGAVCHGPAMLPGI 154 (247)
T ss_dssp HHHHHHCCEEGGGSCGGGCSEEEECCSTTHH-HHGGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGC
T ss_pred HHHHhccCCCHHHCChhhCCEEEEeCCCchh-hhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHh
Confidence 0 01 23579999999996421 112233568889999999999999999999999886
No 59
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.52 E-value=1.6e-07 Score=73.23 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=66.7
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC------------------------C-CC--CC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE------------------------F-PD--DD 54 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------------------------~-p~--~~ 54 (126)
.++||+||-.+.-+.. ++. ...+.|++.|++++++.+.... + +. .+
T Consensus 11 ~~~kv~ill~dg~e~~------E~~-~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~ 83 (396)
T 3uk7_A 11 NSRTVLILCGDYMEDY------EVM-VPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFD 83 (396)
T ss_dssp CCCEEEEECCTTEEHH------HHH-HHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGG
T ss_pred cCCeEEEEeCCCccHH------HHH-HHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChh
Confidence 3579999987655431 112 2346788899999888764210 0 00 01
Q ss_pred --CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 55 --DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 55 --~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+..+||+|+|+||.. + +.......+.++++++.++++|+.+||-|.++|+.+
T Consensus 84 ~~~~~~~D~livpGG~~-~-~~~~~~~~~~~~l~~~~~~~~~i~aiC~G~~~La~a 137 (396)
T 3uk7_A 84 EVDLSKYDGLVIPGGRA-P-EYLALTASVVELVKEFSRSGKPIASICHGQLILAAA 137 (396)
T ss_dssp GCCGGGCSEEEECCBSH-H-HHHTTCHHHHHHHHHHHHTTCCEEEETTTHHHHHHT
T ss_pred hcCcccCCEEEECCCcc-h-hhcccCHHHHHHHHHHHHcCCEEEEECchHHHHHhc
Confidence 235799999999953 2 111112567889999999999999999999999986
No 60
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=98.44 E-value=7.3e-07 Score=74.37 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=68.8
Q ss_pred CCCCeEEEEEc--CCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC----CCCCCCCcCEEEEcCCCCCC---
Q 033165 1 MGGKKFAVLLC--AEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP----DDDDFGSYDGYVITGSCNDA--- 71 (126)
Q Consensus 1 M~~~ki~Il~~--~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p----~~~~~~~~d~iii~G~~~~~--- 71 (126)
|..+||+||-. +..+ ..+ ...+.+.|++.|.+++++.+..++.. +..+..+||+|||+||..+.
T Consensus 527 l~g~kVaIL~a~~dGfe-~~E------~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~ 599 (688)
T 2iuf_A 527 LDGLKVGLLASVNKPAS-IAQ------GAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGA 599 (688)
T ss_dssp CTTCEEEEECCTTCHHH-HHH------HHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCT
T ss_pred CCCCEEEEEecCCCCCc-HHH------HHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCcccccc
Confidence 45689999976 3322 111 12356889999999999987533211 11134589999999995330
Q ss_pred ------------CCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 72 ------------HGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 72 ------------~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.+...-..+..++++++.+.+|||.+||.|-++|..+
T Consensus 600 ~~~~~~~~~~~~~~~L~~~~~~~~~v~~~~~~gKpIaAIc~ap~vL~~a 648 (688)
T 2iuf_A 600 DSFTVEPSAGSGASTLYPAGRPLNILLDAFRFGKTVGALGSGSDALESG 648 (688)
T ss_dssp TTTTCCCCTTSCCCSSSCTTHHHHHHHHHHHHTCEEEEEGGGHHHHHHT
T ss_pred cccccccccccchhhcccChHHHHHHHHHHHcCCEEEEECchHHHHHHc
Confidence 1111223567889999999999999999999999875
No 61
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=98.43 E-value=4e-07 Score=76.34 Aligned_cols=102 Identities=10% Similarity=0.034 Sum_probs=69.0
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--------CC---CCC--CCCcCEEEEcCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--------PD---DDD--FGSYDGYVITGS 67 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------p~---~~~--~~~~d~iii~G~ 67 (126)
|.++||+||-.+.-... ++. ...+.|+..|++++++.+..+.+ .. .++ ..+||+|||+||
T Consensus 532 m~~rkVaILl~dGfe~~------El~-~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG 604 (715)
T 1sy7_A 532 IKSRRVAIIIADGYDNV------AYD-AAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGG 604 (715)
T ss_dssp CTTCEEEEECCTTBCHH------HHH-HHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCC
T ss_pred CCCCEEEEEEcCCCCHH------HHH-HHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCC
Confidence 55689999988665432 111 24567888899999887643211 00 112 246999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
.... +.......+.++|+++.++++||.+||-|..+|+.++|
T Consensus 605 ~~~~-~~l~~~~~l~~~Lr~~~~~gK~IaAIC~G~~lLA~AlG 646 (715)
T 1sy7_A 605 AKAA-ETLSKNGRALHWIREAFGHLKAIGATGEAVDLVAKAIA 646 (715)
T ss_dssp HHHH-HHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHHHHHHC
T ss_pred cccH-hhhccCHHHHHHHHHHHhCCCEEEEECHHHHHHHHccC
Confidence 4221 11111245788999999999999999999999999844
No 62
>3noq_A THIJ/PFPI family protein; DJ-1 superfamily, isocyanide hydratase, isonitrIle hydratase; HET: NHE; 1.00A {Pseudomonas fluorescens} PDB: 3noo_A 3non_A 3nor_A* 3nov_A
Probab=98.41 E-value=7.8e-07 Score=65.02 Aligned_cols=97 Identities=16% Similarity=0.127 Sum_probs=65.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCC---------C--CCCCCCCcCEEEEcCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEF---------P--DDDDFGSYDGYVITGSCND 70 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~---------p--~~~~~~~~d~iii~G~~~~ 70 (126)
++||+||-.+.-... ++.. ..+.|+. .+++++++.+..+.. + ..++..+||.|+||||+..
T Consensus 5 ~~~V~ill~~gf~~~------e~~~-p~evl~~~~~~~v~~vs~~~~~V~~~~G~~v~~d~~l~~~~~~D~livpGG~g~ 77 (231)
T 3noq_A 5 AVQIGFLLFPEVQQL------DLTG-PHDVLASLPDVQVHLIWKEPGPVVASSGLVLQATTSFADCPPLDVICIPGGTGV 77 (231)
T ss_dssp CEEEEEECCTTCCHH------HHHH-HHHHHTTSTTEEEEEEESSSEEEECTTSCEEEECEETTTCCCCSEEEECCSTTH
T ss_pred cEEEEEEEeCCCcHH------HHHH-HHHHHHcCCCCEEEEEECCCCcEEcCCCCEEecccChhHCCcCCEEEECCCCCh
Confidence 368999988766532 1222 3466766 688888776532100 0 1134567999999999632
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 71 AHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 71 ~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
. +....+.+.++|++..++++++.+||-|..+|+.+
T Consensus 78 ~--~~~~~~~l~~~lr~~~~~g~~v~aiC~G~~~La~a 113 (231)
T 3noq_A 78 G--ALMEDPQALAFIRQQAARARYVTSVSTGSLVLGAA 113 (231)
T ss_dssp H--HHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred h--hhccCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 1 11112567889999999999999999999999985
No 63
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=98.41 E-value=6e-07 Score=75.38 Aligned_cols=96 Identities=16% Similarity=0.067 Sum_probs=67.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--------CC---CC--CCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--------PD---DD--DFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------p~---~~--~~~~~d~iii~G~~~ 69 (126)
.+||+||-.+.-++.. +. ...+.|++.|.+++++.+..+.+ .. .+ ....||+|||+|| .
T Consensus 600 grKVaILlaDGfEe~E------l~-~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGG-g 671 (753)
T 3ttv_A 600 GRVVAILLNDEVRSAD------LL-AILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCG-N 671 (753)
T ss_dssp TCEEEEECCTTCCHHH------HH-HHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCS-C
T ss_pred CCEEEEEecCCCCHHH------HH-HHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCC-C
Confidence 5799999887665421 11 24578888999999887643210 00 11 1236999999999 2
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+ +......++.++|+++.+.++||.+||-|.++|+.+
T Consensus 672 -~-~~Lr~d~~vl~~Vre~~~~gKpIAAIC~Gp~lLa~A 708 (753)
T 3ttv_A 672 -I-ADIADNGDANYYLMEAYKHLKPIALAGDARKFKATI 708 (753)
T ss_dssp -G-GGTTTCHHHHHHHHHHHHTTCCEEEEGGGGGGGGGG
T ss_pred -h-HHhhhCHHHHHHHHHHHhcCCeEEEECchHHHHHHc
Confidence 2 212223568889999999999999999999999986
No 64
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=98.41 E-value=1.9e-07 Score=67.07 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=66.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCC---------C--CCCC--CCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFP---------D--DDDF--GSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p---------~--~~~~--~~~d~iii~G~~ 68 (126)
++||+|+-.+.-... ++.. ..+.|+..|++++++.+.. .... + .+++ .+||.|+||||.
T Consensus 9 ~~~v~ill~~g~~~~------e~~~-~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~ 81 (208)
T 3ot1_A 9 SKRILVPVAHGSEEM------ETVI-IVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGV 81 (208)
T ss_dssp CCEEEEEECTTCCHH------HHHH-HHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCH
T ss_pred CCeEEEEECCCCcHH------HHHH-HHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCc
Confidence 469999988766532 1122 3467888899999887642 1110 0 1122 479999999995
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH-HHHHHH
Q 033165 69 NDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH-QVRAIT 108 (126)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~-Q~la~~ 108 (126)
... ++......+.++|+++.++++++.+||-|. .+|+++
T Consensus 82 ~~~-~~l~~~~~l~~~l~~~~~~gk~i~aiC~G~a~~La~a 121 (208)
T 3ot1_A 82 GGA-QAFADSTALLALIDAFSQQGKLVAAICATPALVFAKQ 121 (208)
T ss_dssp HHH-HHHHTCHHHHHHHHHHHHTTCEEEEETTHHHHTTTTT
T ss_pred hHH-HHHhhCHHHHHHHHHHHHcCCEEEEEChhHHHHHHHC
Confidence 222 111112467889999999999999999999 899874
No 65
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=98.40 E-value=5.9e-07 Score=70.06 Aligned_cols=98 Identities=22% Similarity=0.228 Sum_probs=66.5
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC------------------------C-CC--CC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE------------------------F-PD--DD 54 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------------------------~-p~--~~ 54 (126)
.++||+||-.+.-+.. ++.. ..+.|++.|++++++.+.... + +. .+
T Consensus 204 ~~~ki~ill~dg~~~~------e~~~-~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~ 276 (396)
T 3uk7_A 204 ANKRILFLCGDYMEDY------EVKV-PFQSLQALGCQVDAVCPEKKAGDRCPTAIHDFEGDQTYSEKPGHTFALTTNFD 276 (396)
T ss_dssp CCCEEEEECCTTEEHH------HHHH-HHHHHHHHTCEEEEECTTCCTTCEECEEEEECCSSSSCEEEECCCEECCSCGG
T ss_pred ccceEEEEecCCCcch------hHHH-HHHHHHHCCCEEEEECCCCCCCcccccccccccccchhhhcCCceeeccCCHH
Confidence 3679999988665432 1222 346777889999888654211 0 00 11
Q ss_pred --CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 55 --DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 55 --~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
...+||.|+||||.. + +.......+.++++++.++++|+.+||.|.++|+++
T Consensus 277 ~~~~~~~D~livpGg~~-~-~~~~~~~~~~~~l~~~~~~~~~i~aiC~g~~~La~a 330 (396)
T 3uk7_A 277 DLVSSSYDALVIPGGRA-P-EYLALNEHVLNIVKEFMNSEKPVASICHGQQILAAA 330 (396)
T ss_dssp GCCGGGCSEEEECCBSH-H-HHHTTCHHHHHHHHHHHHTTCCEEEEGGGHHHHHHT
T ss_pred HCCcccCCEEEECCCcc-h-hhhccCHHHHHHHHHHHHCCCEEEEEchHHHHHHHc
Confidence 235799999999963 1 111122567889999999999999999999999986
No 66
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=98.39 E-value=9.8e-07 Score=68.83 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=66.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC----------C-CC--CCCC--CCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE----------F-PD--DDDF--GSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~----------~-p~--~~~~--~~~d~iii~G~ 67 (126)
|+||+||-.+.-... ++.. ..+.|+..|++++++.+..+. + ++ .+++ .+||.||||||
T Consensus 10 mkkV~ILl~dgf~~~------El~~-p~dvL~~Ag~~v~vvS~~~g~~V~ss~G~~~i~~d~~l~~v~~~~~DaLiVPGG 82 (365)
T 3fse_A 10 KKKVAILIEQAVEDT------EFII-PCNGLKQAGFEVVVLGSRMNEKYKGKRGRLSTQADGTTTEAIASEFDAVVIPGG 82 (365)
T ss_dssp -CEEEEECCTTBCHH------HHHH-HHHHHHHTTCEEEEEESSSSCCEECTTSCCEECCSEETTTCCGGGCSEEEECCB
T ss_pred ceEEEEEECCCCcHH------HHHH-HHHHHHHCCCEEEEEECCCCceeecCCCceEEeCCCCHhhCCCcCCCEEEEECC
Confidence 579999988765432 1222 346788889999888764321 1 00 1222 36999999999
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.. + +.......+.++|+++.++++++.+||-|..+|+.+
T Consensus 83 ~g-~-~~l~~~~~l~~~Lr~~~~~gk~IaAIC~G~~lLA~A 121 (365)
T 3fse_A 83 MA-P-DKMRRNPNTVRFVQEAMEQGKLVAAVCHGPQVLIEG 121 (365)
T ss_dssp TH-H-HHHTTCHHHHHHHHHHHHTTCEEEEETTTHHHHHHT
T ss_pred cc-h-hhccCCHHHHHHHHHHHHCCCEEEEECHHHHHHHHc
Confidence 63 2 111122567889999999999999999999999985
No 67
>3mgk_A Intracellular protease/amidase related enzyme (THIJ family); amidotranferase-like, structural genomics, PSI; 2.00A {Clostridium acetobutylicum}
Probab=98.31 E-value=7.4e-07 Score=64.22 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=62.7
Q ss_pred CCC-CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC--CCeEEEEEccCC------CC---C--CCCCCCCcCEEEEcC
Q 033165 1 MGG-KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE--GETWDVFHVARG------EF---P--DDDDFGSYDGYVITG 66 (126)
Q Consensus 1 M~~-~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~------~~---p--~~~~~~~~d~iii~G 66 (126)
|++ +||+||-.+.-... ++.. ..+.|+.. +++++++.+..+ .+ + ..++...+|.|+|||
T Consensus 1 m~~~~~V~ill~~g~~~~------e~~~-~~~~l~~a~~~~~v~~vs~~~~~V~~~~G~~v~~d~~~~~~~~~D~livpG 73 (211)
T 3mgk_A 1 MSLSYRIDVLLFNKFETL------DVFG-PVEIFGNLQDDFELNFISSDGGLVESSQKVRVETSLYTRDENIEKILFVPG 73 (211)
T ss_dssp ---CEEEEEECCTTCCHH------HHHH-HHHHHTTCTTTEEEEEECSSCEEEECTTCCEEEEBCCCCCSSSEEEEEECC
T ss_pred CCCceEEEEEEeCCcchh------HHHH-HHHHHHhCCCceEEEEEECCCCeEecCCCcEEEeccchhhCCCCCEEEECC
Confidence 553 58999988776542 1222 34667665 467766644311 00 0 112345699999999
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 67 SCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
|.... .......+.++|+++.++++++.+||-|..+|+.+
T Consensus 74 G~~~~--~~~~~~~~~~~l~~~~~~~k~iaaiC~G~~~La~a 113 (211)
T 3mgk_A 74 GSGTR--EKVNDDNFINFIGNMVKESKYIISVCTGSALLSKA 113 (211)
T ss_dssp STHHH--HHTTCHHHHHHHHHHHHHCSEEEECTTHHHHHHHT
T ss_pred Ccchh--hhcCCHHHHHHHHHHHHcCCEEEEEchHHHHHHhc
Confidence 95321 11112467889999999999999999999999985
No 68
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=98.30 E-value=2.3e-06 Score=64.64 Aligned_cols=79 Identities=14% Similarity=0.071 Sum_probs=57.3
Q ss_pred HHHHhhCCCeEEEEEccCCCCC--------------------------C---CC------CCCCcCEEEEcCCCCCCCCC
Q 033165 30 VRMLAEEGETWDVFHVARGEFP--------------------------D---DD------DFGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 30 ~~~l~~~g~~~~~~~~~~~~~p--------------------------~---~~------~~~~~d~iii~G~~~~~~~~ 74 (126)
.+.|++.|++++++.+..+..+ . .+ +.++||+|||+||.... .+
T Consensus 82 ~~vL~~ag~~v~i~S~~g~~v~~d~~s~~~~~~~~~~~~~~~g~~l~~~~~l~~v~~~~~~~~~yD~livPGG~g~~-~~ 160 (291)
T 1n57_A 82 LYHLHAAGFEFEVATISGLMTKFEYWAMPHKDEKVMPFFEQHKSLFRNPKKLADVVASLNADSEYAAIFVPGGHGAL-IG 160 (291)
T ss_dssp HHHHHHTTCCEEEEESSSCCCCBCGGGCCTTCTTHHHHHHHHHHHHHSCEEHHHHHHTCCTTCSEEEEEECCSGGGG-SS
T ss_pred HHHHHHCCCEEEEEeCCCCcccccccccccccHHHHHHHHhccceecCCccHHHHhhhccCcccCCEEEecCCcchh-hh
Confidence 3667888999999987533221 0 01 24689999999995432 12
Q ss_pred chHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHh
Q 033165 75 DVWICKLIALLKQLDSLRKKVLGICFGHQVRAITV 109 (126)
Q Consensus 75 ~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~ 109 (126)
......+.++|+++.+++++|.+||.|..+|+.+-
T Consensus 161 l~~~~~l~~~l~~~~~~gk~VaaIC~Gp~~La~a~ 195 (291)
T 1n57_A 161 LPESQDVAAALQWAIKNDRFVISLCHGPAAFLALR 195 (291)
T ss_dssp GGGCHHHHHHHHHHHHTTCEEEEETTGGGGGGGGT
T ss_pred hhhCHHHHHHHHHHHHcCCEEEEECccHHHHHhhc
Confidence 22335688999999999999999999999888763
No 69
>3ewn_A THIJ/PFPI family protein; monomer, PSI nysgrc, structural genomics, protein structure initiative; 1.65A {Pseudomonas syringae PV}
Probab=98.21 E-value=4.9e-06 Score=61.68 Aligned_cols=96 Identities=11% Similarity=0.127 Sum_probs=63.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHH-hhCCCeEEEEEccCCCC---------CC--CCCC-CCcCEEEEcCCC-C
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRML-AEEGETWDVFHVARGEF---------PD--DDDF-GSYDGYVITGSC-N 69 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~~~~~---------p~--~~~~-~~~d~iii~G~~-~ 69 (126)
+||+||-.+.-... ++.. ..+.| ...+++++++.+..+.. ++ .++. ..||.|+|+||. .
T Consensus 24 ~~I~ill~~gf~~~------e~~~-p~dvl~~~~~~~v~~vs~~~~~V~~~~G~~i~~d~~l~~~~~~yD~liVPGG~~g 96 (253)
T 3ewn_A 24 EQIAMLVYPGMTVM------DLVG-PHCMFGSLMGAKIYIVAKSLDPVTSDAGLAIVPTATFGTCPRDLTVLFAPGGTDG 96 (253)
T ss_dssp CEEEEECCTTBCHH------HHHH-HHHHHTTSTTCEEEEEESSSSCEECTTSCEECCSEETTTSCSSCSEEEECCBSHH
T ss_pred eEEEEEeCCCCcHH------HHHH-HHHHHHhCCCCEEEEEeCCCCeEEcCCCCEEeCCcCHHHcCCCCCEEEECCCccc
Confidence 68999988765432 1222 34566 46788888887542211 00 1122 357999999996 2
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 70 DAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
.. .......+.++|+++.++++++.+||-|..+|+.+
T Consensus 97 ~~--~l~~~~~l~~~Lr~~~~~gk~IaaICtG~~lLa~A 133 (253)
T 3ewn_A 97 TL--AAASDAETLAFMADRGARAKYITSVCSGSLILGAA 133 (253)
T ss_dssp HH--HHTTCHHHHHHHHHHHTTCSEEEEETTHHHHHHHT
T ss_pred hh--hhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 11 11112567889999999999999999999999986
No 70
>4gdh_A DJ-1, uncharacterized protein C22E12.03C; unknown function, cysteine oxidation; 1.05A {Schizosaccharomyces pombe} PDB: 4ge3_A 4ge0_A
Probab=98.20 E-value=2.1e-06 Score=61.06 Aligned_cols=98 Identities=16% Similarity=0.086 Sum_probs=59.3
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC------------CC--CCC-------CCCcC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF------------PD--DDD-------FGSYD 60 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~------------p~--~~~-------~~~~d 60 (126)
.|+||+|+-.+.-++. ++.. ..+.|++.|.+++++.+....- ++ .++ .++||
T Consensus 3 ~M~kV~ill~dGfe~~------E~~~-p~~vl~~ag~~v~~~s~~~~~~~~v~~~~g~~v~~d~~~~~~~~~d~~~~~yD 75 (194)
T 4gdh_A 3 HMVKVCLFVADGTDEI------EFSA-PWGIFKRAEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYD 75 (194)
T ss_dssp --CCEEEEEETTCCHH------HHHH-HHHHHHHTTCCEEEEEESSCTTCEEECTTSCEEECSEEGGGSCCHHHHHHHCS
T ss_pred CCCEEEEEECCCcCHH------HHHH-HHHHHHHCCCeEEEEEEcCCCCceEecCCCceeeccccHhhCCccccccccCC
Confidence 4789999998776532 1222 2367788899888776542110 00 001 13589
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHHHHHHhc-CCcEEEEchHHHHHHHH
Q 033165 61 GYVITGSCNDAHGNDVWICKLIALLKQLDSL-RKKVLGICFGHQVRAIT 108 (126)
Q Consensus 61 ~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~-~~PvlGIC~G~Q~la~~ 108 (126)
+||||||.... +.....+.+.++++++.++ ++++..||-|.. |+.+
T Consensus 76 ~lvvPGG~~~~-~~l~~~~~l~~~l~~~~~~~~k~iaaiC~g~~-l~~a 122 (194)
T 4gdh_A 76 IAIIPGGGLGA-KTLSTTPFVQQVVKEFYKKPNKWIGMICAGTL-TAKT 122 (194)
T ss_dssp EEEECCCHHHH-HHHHTCHHHHHHHHHHTTCTTCEEEEEGGGGH-HHHH
T ss_pred EEEECCCchhH-hHhhhCHHHHHHHHHhhhcCCceEEeeccccc-chhh
Confidence 99999994322 1111124577888887654 789999999985 4443
No 71
>3bhn_A THIJ/PFPI domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.76A {Shewanella loihica pv-4}
Probab=97.70 E-value=2.4e-05 Score=57.35 Aligned_cols=96 Identities=16% Similarity=0.162 Sum_probs=56.9
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC--CeEEEEEccCC------CC---CC--CCCCCCcCEEEEcCCC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG--ETWDVFHVARG------EF---PD--DDDFGSYDGYVITGSC 68 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~------~~---p~--~~~~~~~d~iii~G~~ 68 (126)
.++||+|+-.+.-... ++.. ..+.|+..+ ++++++. ..+ .+ ++ .++..+||.||||||.
T Consensus 19 ~~~kV~ill~dGf~~~------e~~~-p~dvl~~~~~~~~v~~vs-~~~~V~ss~G~~v~~d~~l~~~~~~D~liVPGG~ 90 (236)
T 3bhn_A 19 GMYKVGIVLFDDFTDV------DFFL-MNDLLGRTSDSWTVRILG-TKPEHHSQLGMTVKTDGHVSEVKEQDVVLITSGY 90 (236)
T ss_dssp -CEEEEEECCTTBCHH------HHHH-HHHHHTTCSSSEEEEEEE-SSSEEEBTTCCEEECSEEGGGGGGCSEEEECCCT
T ss_pred CCCEEEEEeCCCChHH------HHHH-HHHHHHcCCCCEEEEEEE-CCCcEEecCCcEEecCcccccccCCCEEEEcCCc
Confidence 3578999988665432 1222 345666655 5777665 311 00 11 1234679999999993
Q ss_pred CCCCCCchHHHHHHHHHHHHHhcCC-cEEEEchHHHHHHHH
Q 033165 69 NDAHGNDVWICKLIALLKQLDSLRK-KVLGICFGHQVRAIT 108 (126)
Q Consensus 69 ~~~~~~~~~~~~~~~~i~~~~~~~~-PvlGIC~G~Q~la~~ 108 (126)
..+. +....+.+.++| ..++++ ++.+||-|..+|+.+
T Consensus 91 ~g~~-~l~~~~~l~~~L--~~~~~~~~IaaIC~G~~lLa~A 128 (236)
T 3bhn_A 91 RGIP-AALQDENFMSAL--KLDPSRQLIGSICAGSFVLHEL 128 (236)
T ss_dssp THHH-HHHTCHHHHHHC--CCCTTTCEEEEETTHHHHHHHT
T ss_pred cCHh-hhccCHHHHHHH--HhCCCCCEEEEEcHHHHHHHHc
Confidence 1111 111124566677 344566 999999999999986
No 72
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=97.41 E-value=3.5e-05 Score=58.34 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=64.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEccCCC-CCCC---CCCCCcCEEEEcCCCCCCCCCchHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVARGE-FPDD---DDFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~-~p~~---~~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
.||+++-+-...+. .|...+.+.|++.|. +++++.+...+ ...+ +.+.+.|+|+++||.. ..-..++
T Consensus 57 ~~I~~IptAs~~~~------~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~~ad~I~v~GGnt--~~l~~~l 128 (291)
T 3en0_A 57 AIIGIIPSASREPL------LIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVEQCTGIFMTGGDQ--LRLCGLL 128 (291)
T ss_dssp CEEEEECTTCSSHH------HHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHHHCSEEEECCSCH--HHHHHHH
T ss_pred CeEEEEeCCCCChH------HHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHhcCCEEEECCCCH--HHHHHHH
Confidence 68999976555432 356667888888898 67776653211 1110 1356899999999932 1101112
Q ss_pred --HHHHHHHHHHHhcC-CcEEEEchHHHHHHHH
Q 033165 79 --CKLIALLKQLDSLR-KKVLGICFGHQVRAIT 108 (126)
Q Consensus 79 --~~~~~~i~~~~~~~-~PvlGIC~G~Q~la~~ 108 (126)
..+.+.|+++++++ +|+.|.|.|+-+++..
T Consensus 129 ~~t~l~~~L~~~~~~G~~~~~GtSAGA~i~~~~ 161 (291)
T 3en0_A 129 ADTPLMDRIRQRVHNGEISLAGTSAGAAVMGHH 161 (291)
T ss_dssp TTCHHHHHHHHHHHTTSSEEEEETHHHHTTSSE
T ss_pred HhCCHHHHHHHHHHCCCeEEEEeCHHHHhhhHh
Confidence 23667889998888 9999999999998753
No 73
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=95.61 E-value=0.036 Score=38.24 Aligned_cols=42 Identities=17% Similarity=0.086 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR 47 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 47 (126)
|+|+||+|+..... .+.+. ....+.+.+++.|.+++++++.+
T Consensus 3 M~M~kilii~~S~~-g~T~~----la~~i~~~l~~~g~~v~~~~l~~ 44 (200)
T 2a5l_A 3 MSSPYILVLYYSRH-GATAE----MARQIARGVEQGGFEARVRTVPA 44 (200)
T ss_dssp --CCEEEEEECCSS-SHHHH----HHHHHHHHHHHTTCEEEEEBCCC
T ss_pred CCcceEEEEEeCCC-ChHHH----HHHHHHHHHhhCCCEEEEEEhhh
Confidence 78899999988753 22111 22334455566788898888754
No 74
>1u0t_A Inorganic polyphosphate/ATP-NAD kinase; alpha-beta, beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Mycobacterium tuberculosis} SCOP: e.52.1.1 PDB: 1u0r_A 1y3i_A* 1y3h_A
Probab=95.52 E-value=0.066 Score=40.22 Aligned_cols=86 Identities=12% Similarity=0.149 Sum_probs=46.7
Q ss_pred CCC-CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-----------------CCC---C-CCCCC
Q 033165 1 MGG-KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-----------------FPD---D-DDFGS 58 (126)
Q Consensus 1 M~~-~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----------------~p~---~-~~~~~ 58 (126)
|++ +|++|+-+..... . ......+.++|++.|.++.+......+ ... . ...++
T Consensus 1 m~~m~ki~iI~n~~~~~-~----~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 75 (307)
T 1u0t_A 1 MTAHRSVLLVVHTGRDE-A----TETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIEVVDADQHAADG 75 (307)
T ss_dssp ----CEEEEEESSSGGG-G----SHHHHHHHHHHHTTTCEEEEEC-----------------------------------
T ss_pred CCCCCEEEEEEeCCCHH-H----HHHHHHHHHHHHHCCCEEEEecchhhhhhcccccccccccccccccccccccccccC
Confidence 654 5899887754422 1 123456778898889887654322111 110 0 12356
Q ss_pred cCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 59 YDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 59 ~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
+|.+|+.||- ..+....+.+...++|++||=.|
T Consensus 76 ~d~vi~~GGD----------GT~l~a~~~~~~~~~pvlgi~~G 108 (307)
T 1u0t_A 76 CELVLVLGGD----------GTFLRAAELARNASIPVLGVNLG 108 (307)
T ss_dssp CCCEEEEECH----------HHHHHHHHHHHHHTCCEEEEECS
T ss_pred CCEEEEEeCC----------HHHHHHHHHhccCCCCEEEEeCC
Confidence 8999999992 23444455555568999999655
No 75
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=95.03 E-value=0.033 Score=38.54 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=24.4
Q ss_pred CC-CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165 1 MG-GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR 47 (126)
Q Consensus 1 M~-~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 47 (126)
|+ |+||+|+... . ...+. ....+.+.+++.|.+++++++.+
T Consensus 1 M~~mmkilii~~S-~-g~T~~----la~~i~~~l~~~g~~v~~~~l~~ 42 (199)
T 2zki_A 1 MSCKPNILVLFYG-Y-GSIVE----LAKEIGKGAEEAGAEVKIRRVRE 42 (199)
T ss_dssp --CCCEEEEEECC-S-SHHHH----HHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCCCcEEEEEEeC-c-cHHHH----HHHHHHHHHHhCCCEEEEEehhH
Confidence 54 6799999887 3 22211 22334445555688999988754
No 76
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=94.99 E-value=0.065 Score=39.69 Aligned_cols=81 Identities=6% Similarity=-0.088 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC-CCCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP-DDDDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p-~~~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
|+|+||+.-.... .-..+|.++|+..|++++++.... ++ ..+++.+||.||+.-.... .+....
T Consensus 4 m~~vLiV~g~~~~--------~~a~~l~~aL~~~g~~V~~i~~~~--~~~~~~~L~~yDvIIl~d~~~~-----~l~~~~ 68 (259)
T 3rht_A 4 MTRVLYCGDTSLE--------TAAGYLAGLMTSWQWEFDYIPSHV--GLDVGELLAKQDLVILSDYPAE-----RMTAQA 68 (259)
T ss_dssp --CEEEEESSCTT--------TTHHHHHHHHHHTTCCCEEECTTS--CBCSSHHHHTCSEEEEESCCGG-----GBCHHH
T ss_pred CceEEEECCCCch--------hHHHHHHHHHHhCCceEEEecccc--cccChhHHhcCCEEEEcCCccc-----cCCHHH
Confidence 6899999633221 234568889999999999887542 33 2346789999999743221 122345
Q ss_pred HHHHHHHHhcCCcEEEE
Q 033165 82 IALLKQLDSLRKKVLGI 98 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGI 98 (126)
.+.|++.++.+.=++.+
T Consensus 69 ~~~L~~yV~~GGgLi~~ 85 (259)
T 3rht_A 69 IDQLVTMVKAGCGLVML 85 (259)
T ss_dssp HHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhCCeEEEe
Confidence 56677777777666665
No 77
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=94.34 E-value=0.0076 Score=41.66 Aligned_cols=69 Identities=13% Similarity=0.081 Sum_probs=43.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCC-CCcCEEEEcCCCCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDF-GSYDGYVITGSCNDA 71 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~-~~~d~iii~G~~~~~ 71 (126)
|.++|++||-+++.--. -+.+++...++..+|++.|.++..+.+..|+ ... +.+ .++|.||.+||.+-.
T Consensus 5 ~~~~rv~ii~tGdEl~~-G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~Dd-~~i~~al~~a~~~~~DlVittGG~s~g 79 (164)
T 3pzy_A 5 MTTRSARVIIASTRASS-GEYEDRCGPIITEWLAQQGFSSAQPEVVADG-SPVGEALRKAIDDDVDVILTSGGTGIA 79 (164)
T ss_dssp --CCEEEEEEECHHHHC-----CCHHHHHHHHHHHTTCEECCCEEECSS-HHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred CCCCEEEEEEECCCCCC-CceeeHHHHHHHHHHHHCCCEEEEEEEeCCH-HHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 77899999988765321 1236788889999999999887655443333 211 012 379999999996543
No 78
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=93.91 E-value=0.034 Score=39.47 Aligned_cols=73 Identities=11% Similarity=-0.038 Sum_probs=43.0
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe--EEEEEccCCCCCCC-----CCCC--CcCEEEEcCCCCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET--WDVFHVARGEFPDD-----DDFG--SYDGYVITGSCNDA 71 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~--~~~~~~~~~~~p~~-----~~~~--~~d~iii~G~~~~~ 71 (126)
|.++|++||-+++.-.. -+-+++...++.++|++.|.+ +..+.+..++.... +-++ ++|.||.+||.+..
T Consensus 1 ~~~~rv~IIttGdEl~~-G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGGtg~g 79 (195)
T 1di6_A 1 MATLRIGLVSISDRASS-GVYQDKGIPALEEWLTSALTTPFELETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGGTGPA 79 (195)
T ss_dssp -CCEEEEEEEEECC--------CCHHHHHHHHHHHHBCSCEEEEEEEEESCHHHHHHHHHHHHHTSCCSEEEEESCCSSS
T ss_pred CCCCEEEEEEECCCCCC-CeEEchHHHHHHHHHHHcCCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 88999999999887532 123567778899999998877 33333322321100 0112 58999999997544
Q ss_pred CCC
Q 033165 72 HGN 74 (126)
Q Consensus 72 ~~~ 74 (126)
.+|
T Consensus 80 ~~D 82 (195)
T 1di6_A 80 RRD 82 (195)
T ss_dssp TTC
T ss_pred CCc
Confidence 333
No 79
>2r47_A Uncharacterized protein MTH_862; unknown function, structural genomics, APC5901, PSI-2; 1.88A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.89 E-value=0.019 Score=39.50 Aligned_cols=43 Identities=19% Similarity=0.287 Sum_probs=32.2
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
.+.|.|||.||-+.+.-.. -.++..++|.++.+...+++||||
T Consensus 83 ~~~D~vVllGGLAMPk~~v-~~e~v~~li~ki~~~~~kiiGvCF 125 (157)
T 2r47_A 83 GNVDVLVLLGGLSMPGIGS-DIEDVKKLVEDALEEGGELMGLCY 125 (157)
T ss_dssp CCEEEEEEEGGGGSTTTSC-CHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEEEEeccccCCCCCC-CHHHHHHHHHHhhcCCCCEEEEEh
Confidence 5899999999966553221 245677888888766788999997
No 80
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=93.63 E-value=1.4 Score=32.63 Aligned_cols=87 Identities=15% Similarity=0.077 Sum_probs=54.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC-CeEEEEEccC-----CCCCCCCCCCCcCEEEEcCCCCCCCCCch
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG-ETWDVFHVAR-----GEFPDDDDFGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~-----~~~p~~~~~~~~d~iii~G~~~~~~~~~~ 76 (126)
..|+||+.-....+ . ..-...+.++|++.+ +++++..-.. ..+ . +.|.+||.||+.-. .. .
T Consensus 4 ~~kvLiv~G~~~H~-~----~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f-~-~~L~~~D~vV~~~~-~~-----~ 70 (281)
T 4e5v_A 4 PIKTLLITGQNNHN-W----QVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF-V-LDFSPYQLVVLDYN-GD-----S 70 (281)
T ss_dssp CEEEEEEESCCSSC-H----HHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC-C-CCCTTCSEEEECCC-SS-----C
T ss_pred ceEEEEEcCCCCCC-h----HHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH-h-hhhhcCCEEEEeCC-CC-----c
Confidence 46889994433211 1 123457888888888 8888876321 112 2 36899999996332 11 1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 77 WICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
+.....+.+.+.++.+.+++|+..+.
T Consensus 71 l~~~~~~~l~~yV~~Ggglv~~H~a~ 96 (281)
T 4e5v_A 71 WPEETNRRFLEYVQNGGGVVIYHAAD 96 (281)
T ss_dssp CCHHHHHHHHHHHHTTCEEEEEGGGG
T ss_pred CCHHHHHHHHHHHHcCCCEEEEeccc
Confidence 22345556777788899999998653
No 81
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=93.51 E-value=0.24 Score=32.44 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCC-CcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFG-SYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~-~~d~iii~G~ 67 (126)
|+|++|+.....- +.+ .....+.+.+++.|.+++++++.+.+ .+++. ++|.||+.-+
T Consensus 1 M~ki~I~y~S~tG-nT~----~~A~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~~d~ii~g~p 58 (148)
T 3f6r_A 1 MSKVLIVFGSSTG-NTE----SIAQKLEELIAAGGHEVTLLNAADAS---AENLADGYDAVLFGCS 58 (148)
T ss_dssp -CEEEEEEECSSS-HHH----HHHHHHHHHHHTTTCEEEEEETTTBC---CTTTTTTCSEEEEEEC
T ss_pred CCeEEEEEECCCc-hHH----HHHHHHHHHHHhCCCeEEEEehhhCC---HhHhcccCCEEEEEec
Confidence 4689999876542 222 13445666677778899998875422 23567 8998888644
No 82
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=93.34 E-value=0.02 Score=42.05 Aligned_cols=71 Identities=20% Similarity=0.282 Sum_probs=45.9
Q ss_pred HHHHHHhhCCCeEEEEEcc--CCCCCCC-CCCCCcCEEEEcCCCCCCCC--CchHH-----HHHHHHHHHHHhcCCcEEE
Q 033165 28 VFVRMLAEEGETWDVFHVA--RGEFPDD-DDFGSYDGYVITGSCNDAHG--NDVWI-----CKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~--~~~~p~~-~~~~~~d~iii~G~~~~~~~--~~~~~-----~~~~~~i~~~~~~~~PvlG 97 (126)
.+.++|+..+.+++++.+. ...+|.. +.+++||.||+.+.+..... ...|. ....+.|++.++.+..+++
T Consensus 44 ~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGgll~ 123 (256)
T 2gk3_A 44 WLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGGLLM 123 (256)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCEEEE
Confidence 4677888889888887532 1134521 34689999999986532111 01121 3356778888888999999
Q ss_pred E
Q 033165 98 I 98 (126)
Q Consensus 98 I 98 (126)
|
T Consensus 124 i 124 (256)
T 2gk3_A 124 I 124 (256)
T ss_dssp E
T ss_pred E
Confidence 9
No 83
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=93.29 E-value=0.69 Score=33.96 Aligned_cols=68 Identities=15% Similarity=0.101 Sum_probs=44.3
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
||++|+-+. . +... .....+.++|++.|.+++ .+++|.||..||- ..+..
T Consensus 1 mki~ii~n~-~-~~~~----~~~~~l~~~l~~~g~~v~--------------~~~~D~vv~lGGD----------GT~l~ 50 (272)
T 2i2c_A 1 MKYMITSKG-D-EKSD----LLRLNMIAGFGEYDMEYD--------------DVEPEIVISIGGD----------GTFLS 50 (272)
T ss_dssp CEEEEEECC-S-HHHH----HHHHHHHHHHTTSSCEEC--------------SSSCSEEEEEESH----------HHHHH
T ss_pred CEEEEEECC-C-HHHH----HHHHHHHHHHHHCCCEeC--------------CCCCCEEEEEcCc----------HHHHH
Confidence 489998883 2 2222 234557778888887651 1468999999992 23445
Q ss_pred HHHHHHhc--CCcEEEEchH
Q 033165 84 LLKQLDSL--RKKVLGICFG 101 (126)
Q Consensus 84 ~i~~~~~~--~~PvlGIC~G 101 (126)
..+.+... ++|++||=.|
T Consensus 51 aa~~~~~~~~~~PilGIn~G 70 (272)
T 2i2c_A 51 AFHQYEERLDEIAFIGIHTG 70 (272)
T ss_dssp HHHHTGGGTTTCEEEEEESS
T ss_pred HHHHHhhcCCCCCEEEEeCC
Confidence 55555544 8999999655
No 84
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=92.62 E-value=0.22 Score=37.54 Aligned_cols=96 Identities=14% Similarity=0.110 Sum_probs=54.9
Q ss_pred CCCCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CC---CCCCCCCCcCEEEEcCCCCCCCCCc
Q 033165 1 MGGKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EF---PDDDDFGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~---p~~~~~~~~d~iii~G~~~~~~~~~ 75 (126)
|.|+|++|+.+..... ... .....+.++|++.+.+++++..... +. ......+.+|.||+.||-
T Consensus 22 m~m~~i~vI~NP~sg~~~~~----~~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GGD------- 90 (337)
T 2qv7_A 22 MMRKRARIIYNPTSGKEQFK----RELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGGD------- 90 (337)
T ss_dssp SCCEEEEEEECTTSTTSCHH----HHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEECH-------
T ss_pred cccceEEEEECCCCCCCchH----HHHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcCc-------
Confidence 5567898887754421 111 1234577888888988877653211 00 000112568999999992
Q ss_pred hHHHHHHHHHHHH--HhcCCcEEEEchHHH-HHHHHhC
Q 033165 76 VWICKLIALLKQL--DSLRKKVLGICFGHQ-VRAITVF 110 (126)
Q Consensus 76 ~~~~~~~~~i~~~--~~~~~PvlGIC~G~Q-~la~~~G 110 (126)
..+.+.++.+ ...++|+.+|=.|-- .+|+.+|
T Consensus 91 ---GTv~~v~~~l~~~~~~~pl~iIP~GT~N~lAr~Lg 125 (337)
T 2qv7_A 91 ---GTLNEVVNGIAEKPNRPKLGVIPMGTVNDFGRALH 125 (337)
T ss_dssp ---HHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTT
T ss_pred ---hHHHHHHHHHHhCCCCCcEEEecCCcHhHHHHHcC
Confidence 2344555555 335678887765532 3555555
No 85
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=92.59 E-value=0.44 Score=30.76 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=38.3
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
.|.+++...+++++- +.+...|.+|+.-|..+. ..+|+..+ |+.+.+.++|++||
T Consensus 19 ~L~~~l~~~~f~~~~-----------~~I~~~~~vIvL~G~~t~--~s~wv~~E---I~~A~~~gkpIigV 73 (111)
T 1eiw_A 19 VFLERLEQSGLEWRP-----------ATPEDADAVIVLAGLWGT--RRDEILGA---VDLARKSSKPIITV 73 (111)
T ss_dssp HHHHHHHHHCSCEEE-----------CCSSSCSEEEEEGGGTTT--SHHHHHHH---HHHHTTTTCCEEEE
T ss_pred HHHHHHhCCCCeeec-----------CccccCCEEEEEeCCCcC--CChHHHHH---HHHHHHcCCCEEEE
Confidence 455666555776663 257889999998886543 34677665 45566789999998
No 86
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=92.51 E-value=0.034 Score=39.24 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=45.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCC-CCcCEEEEcCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDF-GSYDGYVITGSCNDA 71 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~-~~~d~iii~G~~~~~ 71 (126)
++|++||-+++.--.- + +++...++..++++.|.++..+.+..|+.... +.+ +++|.||.+||.+-.
T Consensus 30 ~~rvaIistGdEl~~G-~-~Dsn~~~L~~~L~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~DlVIttGGts~g 102 (185)
T 3rfq_A 30 VGRALVVVVDDRTAHG-D-EDHSGPLVTELLTEAGFVVDGVVAVEADEVDIRNALNTAVIGGVDLVVSVGGTGVT 102 (185)
T ss_dssp CEEEEEEEECHHHHTT-C-CCSHHHHHHHHHHHTTEEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred CCEEEEEEECcccCCC-C-cCcHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 5789999887653211 2 77888999999999999887666554432110 112 579999999996543
No 87
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=92.49 E-value=0.055 Score=37.72 Aligned_cols=72 Identities=11% Similarity=0.042 Sum_probs=45.1
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCCCCCC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~~~~~ 74 (126)
+++|++||-+++.--. -+.+++...++.++|++.|.++..+.+..++.... ..++++|.||.+||-+...+|
T Consensus 2 ~~~~v~IistGdEll~-G~i~DtN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~DlVittGG~g~~~~D 78 (172)
T 3kbq_A 2 NAKNASVITVGNEILK-GRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDD 78 (172)
T ss_dssp --CEEEEEEECHHHHT-TSSCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEEESCCSSSTTC
T ss_pred CCCEEEEEEEcccccC-CcEEeHHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCEEEEcCCCcCCccc
Confidence 3579999988764211 11245667789999999999887766554431110 012469999999996554444
No 88
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=92.36 E-value=0.11 Score=36.25 Aligned_cols=69 Identities=14% Similarity=0.125 Sum_probs=44.2
Q ss_pred CCeEEEEEcCCCch--HHH--HhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCC--cCEEEEcCCCCCC
Q 033165 3 GKKFAVLLCAEDSE--YVK--KKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGS--YDGYVITGSCNDA 71 (126)
Q Consensus 3 ~~ki~Il~~~~~~~--~~~--~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~--~d~iii~G~~~~~ 71 (126)
++|++||-+++..- ... +.+++...++..+|++.|.++..+.+..++.... +.+++ +|.||.+||.+..
T Consensus 15 ~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVittGG~s~g 94 (178)
T 2pjk_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYS 94 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSS
T ss_pred CCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCC
Confidence 57999999886321 001 2356677889999999999887665543431110 01234 8999999996543
No 89
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=92.22 E-value=0.31 Score=36.44 Aligned_cols=71 Identities=17% Similarity=0.283 Sum_probs=45.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~ 83 (126)
|||+|+-..... ...+.++|++.|.++.+.. .. .+.+++.|.+|+.||- ..+..
T Consensus 30 mki~iv~~~~~~----------~~~l~~~L~~~g~~v~~~~---~~---~~~~~~~DlvIvlGGD----------GT~L~ 83 (278)
T 1z0s_A 30 MRAAVVYKTDGH----------VKRIEEALKRLEVEVELFN---QP---SEELENFDFIVSVGGD----------GTILR 83 (278)
T ss_dssp CEEEEEESSSTT----------HHHHHHHHHHTTCEEEEES---SC---CGGGGGSSEEEEEECH----------HHHHH
T ss_pred eEEEEEeCCcHH----------HHHHHHHHHHCCCEEEEcc---cc---ccccCCCCEEEEECCC----------HHHHH
Confidence 589998775543 2347788989998776532 11 1134689999999992 22333
Q ss_pred HHHHHHhcCCcEEEEchH
Q 033165 84 LLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~G 101 (126)
..+.+... +|++||=.|
T Consensus 84 aa~~~~~~-~PilGIN~G 100 (278)
T 1z0s_A 84 ILQKLKRC-PPIFGINTG 100 (278)
T ss_dssp HHTTCSSC-CCEEEEECS
T ss_pred HHHHhCCC-CcEEEECCC
Confidence 34443334 999999876
No 90
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=92.16 E-value=0.7 Score=30.11 Aligned_cols=95 Identities=14% Similarity=0.047 Sum_probs=51.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC------CCCCCCCCCcCEEEEcCCCCCCCCC--
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE------FPDDDDFGSYDGYVITGSCNDAHGN-- 74 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~------~p~~~~~~~~d~iii~G~~~~~~~~-- 74 (126)
.++|+|+-..... +.+.+.+.+.|.+.|+++--+++..++ +|+.+++.+.|.++|.=.+..+.+-
T Consensus 4 p~siAVVGaS~~~-------~~~g~~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~v~~~v~ 76 (122)
T 3ff4_A 4 MKKTLILGATPET-------NRYAYLAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQNQLSEYN 76 (122)
T ss_dssp CCCEEEETCCSCT-------TSHHHHHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHHHGGGHH
T ss_pred CCEEEEEccCCCC-------CCHHHHHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHHHHHHHH
Confidence 4689999665543 467777888888888866555554221 3444444347766664221100000
Q ss_pred --------chHHH---HHHHHHHHHHhcCCcEEEEchHHHH
Q 033165 75 --------DVWIC---KLIALLKQLDSLRKKVLGICFGHQV 104 (126)
Q Consensus 75 --------~~~~~---~~~~~i~~~~~~~~PvlGIC~G~Q~ 104 (126)
.-|+. ...++.+.+.+.++.++|=|+|.++
T Consensus 77 e~~~~g~k~v~~~~G~~~~e~~~~a~~~Girvv~nC~gv~l 117 (122)
T 3ff4_A 77 YILSLKPKRVIFNPGTENEELEEILSENGIEPVIGCTLVML 117 (122)
T ss_dssp HHHHHCCSEEEECTTCCCHHHHHHHHHTTCEEEESCHHHHH
T ss_pred HHHhcCCCEEEECCCCChHHHHHHHHHcCCeEECCcCeEEe
Confidence 00110 0123344444567888888888764
No 91
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=92.11 E-value=0.072 Score=39.43 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=48.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-----CCC---CCCCCCcCEEEEcCCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-----FPD---DDDFGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-----~p~---~~~~~~~d~iii~G~~~~~~~~ 74 (126)
|+|++|+.+.... .. ......+.++|++.|.++.+..-.... .+. ....+++|.||+.||-
T Consensus 5 mkki~ii~np~~~-~~----~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~GGD------ 73 (292)
T 2an1_A 5 FKCIGIVGHPRHP-TA----LTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQQADLAVVVGGD------ 73 (292)
T ss_dssp CCEEEEECC------------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHHHCSEEEECSCH------
T ss_pred CcEEEEEEcCCCH-HH----HHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhcccCCCEEEEEcCc------
Confidence 4789999775432 11 234556778888899887665321100 000 0011368999999992
Q ss_pred chHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 75 DVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 75 ~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
..+.+.++.+.+.++|++||=.|
T Consensus 74 ----GT~l~a~~~~~~~~~P~lGI~~G 96 (292)
T 2an1_A 74 ----GNMLGAARTLARYDINVIGINRG 96 (292)
T ss_dssp ----HHHHHHHHHHTTSSCEEEEBCSS
T ss_pred ----HHHHHHHHHhhcCCCCEEEEECC
Confidence 33555566665668999999544
No 92
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=92.01 E-value=0.09 Score=36.15 Aligned_cols=69 Identities=7% Similarity=0.145 Sum_probs=46.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCC--CcCEEEEcCCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFG--SYDGYVITGSCNDAHGN 74 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~--~~d~iii~G~~~~~~~~ 74 (126)
++|++||-++..-. +.+++...++.++|++.|.++..+.+..++.... +.++ ++|.||.+||-+...+|
T Consensus 13 ~~rv~Ii~tGdElg---~i~Dsn~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D 88 (169)
T 1y5e_A 13 EVRCKIVTISDTRT---EETDKSGQLLHELLKEAGHKVTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTNGGTGITKRD 88 (169)
T ss_dssp CCEEEEEEECSSCC---TTTCHHHHHHHHHHHHHTCEEEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEECCCSSSTTC
T ss_pred CCEEEEEEEcCccC---eeccChHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCC
Confidence 57999999988752 3456677789999999999887665543331110 0124 79999999996544333
No 93
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=91.99 E-value=0.24 Score=31.54 Aligned_cols=57 Identities=9% Similarity=-0.094 Sum_probs=36.1
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
|.|+||+++-...-.... ....+.+++++.|.++++......+... .+.+||.++++
T Consensus 1 M~mkkIll~Cg~G~sTS~------l~~k~~~~~~~~gi~~~i~a~~~~~~~~--~~~~~Dvil~~ 57 (106)
T 1e2b_A 1 MEKKHIYLFSSAGMSTSL------LVSKMRAQAEKYEVPVIIEAFPETLAGE--KGQNADVVLLG 57 (106)
T ss_dssp CCCEEEEEECSSSTTTHH------HHHHHHHHHHHSCCSEEEEEECSSSTTH--HHHHCSEEEEC
T ss_pred CCCcEEEEECCCchhHHH------HHHHHHHHHHHCCCCeEEEEecHHHHHh--hccCCCEEEEc
Confidence 788898877655544322 2335778888899988877655443322 34678865544
No 94
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=91.94 E-value=0.19 Score=36.87 Aligned_cols=106 Identities=15% Similarity=0.024 Sum_probs=63.0
Q ss_pred CCeEEEEEcCCCch----HHHHh-hCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCCCCCCCcCEEEEcCCCCCCCCCch
Q 033165 3 GKKFAVLLCAEDSE----YVKKK-YGGYFGVFVRMLAEEGETWDVFHVARGE-FPDDDDFGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 3 ~~ki~Il~~~~~~~----~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~~~~~~~d~iii~G~~~~~~~~~~ 76 (126)
.+|++|..- ...+ .++.- .......+.++|++.++++++....+.+ ...++.+++||.||+.|.... + .
T Consensus 7 ~~~vlv~~~-~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~--~--~ 81 (252)
T 1t0b_A 7 PIRVVVWNE-FRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAH--D--E 81 (252)
T ss_dssp CCEEEEEEC-CCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCG--G--G
T ss_pred CcEEEEECC-ccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCC--C--c
Confidence 468888852 2211 11111 1234567788898899999887643221 122234789999999653211 1 1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEEchHH--HHHHHHhCCcc
Q 033165 77 WICKLIALLKQLDSLRKKVLGICFGH--QVRAITVFSSH 113 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGIC~G~--Q~la~~~Gg~v 113 (126)
+.....+.+++.++++..++|+=.|+ +-....+|+..
T Consensus 82 l~~~~~~al~~~V~~GgG~vgiH~a~~~~~y~~llGg~f 120 (252)
T 1t0b_A 82 VKDEVVERVHRRVLEGMGLIVLHSGHFSKIFKKLMGTTC 120 (252)
T ss_dssp SCHHHHHHHHHHHHTTCEEEEEGGGGGSHHHHHHHCSCC
T ss_pred CCHHHHHHHHHHHHcCCCEEEEcccCCcHHHHhhhCCcc
Confidence 22345566777788999999995553 44556677653
No 95
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=91.54 E-value=0.5 Score=32.35 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
|+||+|+..... .+.+. ....+.+.+++ .|.+++++++.+.+ .+++.++|+||+.-
T Consensus 4 M~kiliiy~S~~-GnT~~----~a~~i~~~l~~~~g~~v~~~~l~~~~---~~~l~~aD~ii~gs 60 (188)
T 2ark_A 4 MGKVLVIYDTRT-GNTKK----MAELVAEGARSLEGTEVRLKHVDEAT---KEDVLWADGLAVGS 60 (188)
T ss_dssp CEEEEEEECCSS-SHHHH----HHHHHHHHHHTSTTEEEEEEETTTCC---HHHHHHCSEEEEEE
T ss_pred CCEEEEEEECCC-cHHHH----HHHHHHHHHhhcCCCeEEEEEhhhCC---HHHHHhCCEEEEEe
Confidence 579999987643 22211 23344555566 78888888875321 12467899988853
No 96
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=91.51 E-value=0.11 Score=35.96 Aligned_cols=70 Identities=11% Similarity=-0.003 Sum_probs=46.4
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCC--CcCEEEEcCCCCCCCCC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFG--SYDGYVITGSCNDAHGN 74 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~--~~d~iii~G~~~~~~~~ 74 (126)
.++|++||-+++... ..+++...++.++|++.|.++..+.+..++.... +.++ ++|.||.+||-+...+|
T Consensus 9 ~~~~v~Ii~tGdE~g---~i~D~n~~~l~~~L~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVittGG~g~~~~D 85 (172)
T 1mkz_A 9 IPTRIAILTVSNRRG---EEDDTSGHYLRDSAQEAGHHVVDKAIVKENRYAIRAQVSAWIASDDVQVVLITGGTGLTEGD 85 (172)
T ss_dssp CCCEEEEEEECSSCC---GGGCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEESCCSSSTTC
T ss_pred CCCEEEEEEEeCCCC---cccCccHHHHHHHHHHCCCeEeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCC
Confidence 357999999988742 2356677789999999999887665543331110 0112 49999999996544444
No 97
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=90.88 E-value=0.48 Score=35.31 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=28.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHH----HHHHhhCCCeEEEEEccCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVF----VRMLAEEGETWDVFHVARGE 49 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~----~~~l~~~g~~~~~~~~~~~~ 49 (126)
|.+|||+||...+.. +||+..+ .+.+++.|.+++++++++..
T Consensus 20 m~~MKiLII~aHP~~-------~S~n~aL~~~~~~~l~~~G~eV~v~DLy~~~ 65 (280)
T 4gi5_A 20 FQSMKVLLIYAHPEP-------RSLNGALKNFAIRHLQQAGHEVQVSDLYAMR 65 (280)
T ss_dssp --CCEEEEEECCSCT-------TSHHHHHHHHHHHHHHHTTCEEEEEETTTTT
T ss_pred hhCCeEEEEEeCCCC-------ccHHHHHHHHHHHHHHHCCCeEEEEEccccC
Confidence 678999999987753 2454443 45566789999999987543
No 98
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=90.75 E-value=0.36 Score=33.52 Aligned_cols=40 Identities=10% Similarity=0.027 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR 47 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 47 (126)
|+||+|+...+.. ..+. ....+.+.+++.|.+++++++.+
T Consensus 6 mmkilii~~S~~g-~T~~----la~~i~~~l~~~g~~v~~~~l~~ 45 (211)
T 1ydg_A 6 PVKLAIVFYSSTG-TGYA----MAQEAAEAGRAAGAEVRLLKVRE 45 (211)
T ss_dssp CCEEEEEECCSSS-HHHH----HHHHHHHHHHHTTCEEEEEECCC
T ss_pred CCeEEEEEECCCC-hHHH----HHHHHHHHHhcCCCEEEEEeccc
Confidence 6899999887632 2111 22334455566788999998764
No 99
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=90.59 E-value=0.66 Score=31.59 Aligned_cols=57 Identities=16% Similarity=0.209 Sum_probs=34.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCC-----------------CCCCCCCcCEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFP-----------------DDDDFGSYDGYVI 64 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p-----------------~~~~~~~~d~iii 64 (126)
|+||+|+..... ...+. ....+.+.+++ .|.+++++++.+. .+ ..+.+.++|+||+
T Consensus 1 Mmkilii~~S~~-g~t~~----la~~i~~~l~~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~ 74 (198)
T 3b6i_A 1 MAKVLVLYYSMY-GHIET----MARAVAEGASKVDGAEVVVKRVPET-MPPQLFEKAGGKTQTAPVATPQELADYDAIIF 74 (198)
T ss_dssp -CEEEEEECCSS-SHHHH----HHHHHHHHHHTSTTCEEEEEECCCC-SCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEE
T ss_pred CCeEEEEEeCCC-cHHHH----HHHHHHHHHhhcCCCEEEEEEcccc-CchhhhhhcccccccCchhhHHHHHHCCEEEE
Confidence 469999988743 22111 22334455566 7889999987642 10 0235678999888
Q ss_pred c
Q 033165 65 T 65 (126)
Q Consensus 65 ~ 65 (126)
.
T Consensus 75 g 75 (198)
T 3b6i_A 75 G 75 (198)
T ss_dssp E
T ss_pred E
Confidence 5
No 100
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=90.56 E-value=1.5 Score=29.71 Aligned_cols=43 Identities=19% Similarity=0.089 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhhCC--CeEEEEEccCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAEEG--ETWDVFHVARGEFP 51 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~~g--~~~~~~~~~~~~~p 51 (126)
|+||+||...+..+ ++.+..+.+ .+++.| .+++++++.+..+|
T Consensus 1 Mmkilii~~S~~~~------~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p 49 (201)
T 1t5b_A 1 MSKVLVLKSSILAG------YSQSGQLTDYFIEQWREKHVADEITVRDLAANPVP 49 (201)
T ss_dssp CCEEEEEECCSSGG------GCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCC
T ss_pred CCeEEEEEeCCCCC------CChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCC
Confidence 47999999887631 134444443 444444 78999988754443
No 101
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=90.43 E-value=0.099 Score=35.88 Aligned_cols=72 Identities=10% Similarity=0.014 Sum_probs=42.8
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHH----HhhCCCeEEEEEccCCCCCCC-----CCCC-CcCEEEEcCCCCCC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRM----LAEEGETWDVFHVARGEFPDD-----DDFG-SYDGYVITGSCNDA 71 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~----l~~~g~~~~~~~~~~~~~p~~-----~~~~-~~d~iii~G~~~~~ 71 (126)
.++|++||-+++.... -+-+++...++.++ |++.|.++..+.+..++.... +-++ ++|.||.+||-...
T Consensus 4 m~~~v~Ii~~GdEl~~-G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVittGG~g~~ 82 (167)
T 2g2c_A 4 MHIKSAIIVVSDRIST-GTRENKALPLLQRLMSDELQDYSYELISEVVVPEGYDTVVEAIATALKQGARFIITAGGTGIR 82 (167)
T ss_dssp CEEEEEEEEECHHHHH-TSSCCCHHHHHHHHHCC----CEEEEEEEEEECSSHHHHHHHHHHHHHTTCSEEEEESCCSSS
T ss_pred CccEEEEEEECCcccC-CceeccHHHHHHHhHHhHHHHCCCEEeEEEEeCCCHHHHHHHHHHHHhCCCCEEEECCCCCCC
Confidence 3469999988765321 12256778889999 988898876655543331110 0122 49999999996544
Q ss_pred CCC
Q 033165 72 HGN 74 (126)
Q Consensus 72 ~~~ 74 (126)
.+|
T Consensus 83 ~~D 85 (167)
T 2g2c_A 83 AKN 85 (167)
T ss_dssp TTC
T ss_pred CCc
Confidence 343
No 102
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=90.38 E-value=0.12 Score=35.96 Aligned_cols=56 Identities=13% Similarity=0.068 Sum_probs=33.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHH----HH-HhhCCCeEEEEEccCCCC---------CC-----CCCCCCcCEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFV----RM-LAEEGETWDVFHVARGEF---------PD-----DDDFGSYDGYV 63 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~-l~~~g~~~~~~~~~~~~~---------p~-----~~~~~~~d~ii 63 (126)
|+||+|+...... ++++..+. +. +++.|.+++++++.+..+ +. .+.+.++|+||
T Consensus 2 Mmkilii~gS~r~-------~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii 74 (197)
T 2vzf_A 2 TYSIVAISGSPSR-------NSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLI 74 (197)
T ss_dssp CEEEEEEECCSST-------TCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCC-------CChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEE
Confidence 5799999876532 13344444 44 555688899988754211 00 01356789998
Q ss_pred Ec
Q 033165 64 IT 65 (126)
Q Consensus 64 i~ 65 (126)
+.
T Consensus 75 ~~ 76 (197)
T 2vzf_A 75 VA 76 (197)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 103
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=89.86 E-value=0.4 Score=32.87 Aligned_cols=72 Identities=13% Similarity=0.052 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCchHHHHh----hCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-------CCCCCcCEEEEcCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKK----YGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-------DDFGSYDGYVITGSCNDA 71 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~----~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-------~~~~~~d~iii~G~~~~~ 71 (126)
++|++||-.++....-... .|.-..++.++|++.|+++..+.+..|+.... ....++|.||.+||-+..
T Consensus 15 ~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittGG~g~~ 94 (178)
T 3iwt_A 15 SLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTGGTGYS 94 (178)
T ss_dssp CCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEESCCSSS
T ss_pred CCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecCCcccC
Confidence 4689999776532111111 24456689999999999987666554431100 123578999999997654
Q ss_pred CCC
Q 033165 72 HGN 74 (126)
Q Consensus 72 ~~~ 74 (126)
.++
T Consensus 95 ~~D 97 (178)
T 3iwt_A 95 PTD 97 (178)
T ss_dssp TTC
T ss_pred CCC
Confidence 444
No 104
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=89.76 E-value=1.1 Score=30.04 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=11.8
Q ss_pred CCCCeEEEEEcCCC
Q 033165 1 MGGKKFAVLLCAED 14 (126)
Q Consensus 1 M~~~ki~Il~~~~~ 14 (126)
|.|+|++|+.....
T Consensus 2 M~~~kilIvY~S~t 15 (162)
T 3klb_A 2 MNDRKILVAYFSCS 15 (162)
T ss_dssp GGGSCEEEEECCSS
T ss_pred CCCCCEEEEEECCC
Confidence 78899999998665
No 105
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=89.14 E-value=0.1 Score=35.71 Aligned_cols=71 Identities=11% Similarity=-0.020 Sum_probs=45.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCC--CcCEEEEcCCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFG--SYDGYVITGSCNDAHGN 74 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~--~~d~iii~G~~~~~~~~ 74 (126)
|+|++||-++..-. .-+-+++...++.++|++.|.++..+.+..++.... +.++ ++|.||.+||.+...+|
T Consensus 1 ~~~v~Ii~tGdEl~-~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~g~~D 78 (164)
T 2is8_A 1 MFRVGILTVSDKGF-RGERQDTTHLAIREVLAGGPFEVAAYELVPDEPPMIKKVLRLWADREGLDLILTNGGTGLAPRD 78 (164)
T ss_dssp CEEEEEEEECHHHH-HTSSCCCHHHHHHHHHTTSSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSSTTC
T ss_pred CcEEEEEEEcCccc-CCCcccchHHHHHHHHHHCCCeEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEcCCCCCCCCC
Confidence 47899998876521 112356778889999999998876665543331110 0123 69999999996544333
No 106
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=89.09 E-value=0.65 Score=33.79 Aligned_cols=58 Identities=17% Similarity=0.151 Sum_probs=36.5
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhhCCCeEEEEEccCCCCCCC------------CCCCCcCEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAEEGETWDVFHVARGEFPDD------------DDFGSYDGYVI 64 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~~g~~~~~~~~~~~~~p~~------------~~~~~~d~iii 64 (126)
|.++||++|...+.. ++++..+.+ .+++.|.+++++++.+..++.. +.+..+|+||+
T Consensus 32 ~~~mkIliI~GS~r~-------~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~ 104 (247)
T 2q62_A 32 THRPRILILYGSLRT-------VSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW 104 (247)
T ss_dssp CSCCEEEEEECCCCS-------SCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE
T ss_pred CCCCeEEEEEccCCC-------CCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE
Confidence 457899999887753 245554444 4455688999988764322211 12346899888
Q ss_pred c
Q 033165 65 T 65 (126)
Q Consensus 65 ~ 65 (126)
.
T Consensus 105 ~ 105 (247)
T 2q62_A 105 V 105 (247)
T ss_dssp E
T ss_pred E
Confidence 5
No 107
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=89.06 E-value=0.5 Score=39.67 Aligned_cols=108 Identities=15% Similarity=0.105 Sum_probs=69.4
Q ss_pred CeEEEEEcCCCchHHH-----Hh--hC---CHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCC
Q 033165 4 KKFAVLLCAEDSEYVK-----KK--YG---GYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHG 73 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~-----~~--~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~ 73 (126)
.||+||.+-..-+.-. .. |+ +|.+ +.+.|...+++++.++... ....+.+++||.||..|...+...
T Consensus 439 ~kVAVLnsWGklRSW~~~~vaHak~~kq~ysy~G-ilEALsg~~~dV~FIsfdD--I~e~e~L~d~DVIIn~G~A~TalS 515 (759)
T 2zuv_A 439 LNVAILNSWGKMRSWMAFTVAHALPNKQTYSYYG-ILESLSGMRVNVRFISFDD--VLAHGIDSDIDVIINGGPVDTAFT 515 (759)
T ss_dssp SEEEEEESSGGGGTTTTTCSSTTCCCTTTHHHHH-HHHHHHTSSSEEEEEEHHH--HHHHCCCTTCCEEEEEECTTSTTT
T ss_pred ceEEEEecCCCCcccccccccccccccccccHHH-HHHHHhcCCCceEEecHHH--hccccccccCCEEEecCcchhccc
Confidence 7999999877654100 00 11 3444 5677888899999887542 211135789999999985544433
Q ss_pred C-chHH-HHHHHHHHHHHhcCCcEEEEc--h-----H----HHHHHHHhCCcccc
Q 033165 74 N-DVWI-CKLIALLKQLDSLRKKVLGIC--F-----G----HQVRAITVFSSHIN 115 (126)
Q Consensus 74 ~-~~~~-~~~~~~i~~~~~~~~PvlGIC--~-----G----~Q~la~~~Gg~v~~ 115 (126)
. ..|. ++..+.|++.+.+|--++||. . | +| |+..||-+...
T Consensus 516 gg~~W~~p~~~~aLR~fV~~GGgLIgVGepSsfqg~g~gryFq-LADVLGVd~e~ 569 (759)
T 2zuv_A 516 GGDVWTNPKLVETVRAWVRGGGAFVGVGEPSSAPRFQTGRFFQ-LADVIGVDEER 569 (759)
T ss_dssp CGGGGGCHHHHHHHHHHHHTTCEEEEEESTTEEEEEETTEEET-THHHHSEEECC
T ss_pred CccccCCHHHHHHHHHHHHcCCcEEEeCCccccccccCccccc-HHhhcCccccc
Confidence 3 2453 457788999998888888775 1 1 24 77777776554
No 108
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=88.38 E-value=2.7 Score=27.29 Aligned_cols=57 Identities=12% Similarity=0.047 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~ 69 (126)
|+|++|+.....- +++ .+...+.+.++..+.++++++.. ..+++.++|.||+.-+..
T Consensus 1 M~ki~I~Y~S~tG-nT~----~~A~~ia~~l~~~g~~v~~~~~~-----~~~~l~~~d~vi~g~pt~ 57 (147)
T 2hna_A 1 MADITLISGSTLG-GAE----YVAEHLAEKLEEAGFTTETLHGP-----LLEDLPASGIWLVISSTH 57 (147)
T ss_dssp CCSEEEECCTTSC-CCH----HHHHHHHHHHHHTTCCEEEECCT-----TSCSSCSEEEEEEECCTT
T ss_pred CCeEEEEEECCch-HHH----HHHHHHHHHHHHCCCceEEecCC-----CHHHcccCCeEEEEECcc
Confidence 4688888654432 111 13445667777778887766532 223577899888865433
No 109
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=88.11 E-value=1.3 Score=28.67 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=34.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCC-cCEEEEcC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGS-YDGYVITG 66 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~-~d~iii~G 66 (126)
||++|+.....- +.+ .....+.+.+++.|.+++++++.+.+ .+++.+ +|.||+.-
T Consensus 1 mki~iiy~S~~G-nt~----~~a~~i~~~l~~~g~~v~~~~~~~~~---~~~l~~~~d~ii~~~ 56 (147)
T 1f4p_A 1 PKALIVYGSTTG-NTE----YTAETIARELADAGYEVDSRDAASVE---AGGLFEGFDLVLLGC 56 (147)
T ss_dssp CEEEEEEECSSS-HHH----HHHHHHHHHHHHHTCEEEEEEGGGCC---STTTTTTCSEEEEEE
T ss_pred CeEEEEEECCcC-HHH----HHHHHHHHHHHhcCCeeEEEehhhCC---HHHhcCcCCEEEEEe
Confidence 488888766542 222 13444555666678889988876432 235778 99988853
No 110
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=87.06 E-value=0.69 Score=31.69 Aligned_cols=54 Identities=13% Similarity=0.166 Sum_probs=33.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh---CCCeEEEEEccCCCCCCC-----------------CCCCCcCEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE---EGETWDVFHVARGEFPDD-----------------DDFGSYDGY 62 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~~p~~-----------------~~~~~~d~i 62 (126)
+|||+|+...+.. ++.+..+.+.+.+ .|.+++++++.+ +|.. +.+.++|+|
T Consensus 6 ~Mkilii~gS~r~-------~g~t~~la~~i~~~l~~g~~v~~~dl~~--~p~~~~~~~~~~~~~~~~~~~~~l~~aD~i 76 (193)
T 1rtt_A 6 DIKVLGISGSLRS-------GSYNSAALQEAIGLVPPGMSIELADISG--IPLYNEDVYALGFPPAVERFREQIRAADAL 76 (193)
T ss_dssp -CEEEEEESCCST-------TCHHHHHHHHHHTTCCTTCEEEECCCTT--CCCCCHHHHTTCCCHHHHHHHHHHHHCSEE
T ss_pred CceEEEEECCCCC-------CChHHHHHHHHHHhccCCCeEEEEeHHH--CCCCCccccccCCCHHHHHHHHHHHhCCEE
Confidence 4699999887652 2456667666533 367788877653 2310 134578988
Q ss_pred EEc
Q 033165 63 VIT 65 (126)
Q Consensus 63 ii~ 65 (126)
|+.
T Consensus 77 i~~ 79 (193)
T 1rtt_A 77 LFA 79 (193)
T ss_dssp EEE
T ss_pred EEE
Confidence 885
No 111
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=86.99 E-value=0.78 Score=33.89 Aligned_cols=84 Identities=11% Similarity=0.082 Sum_probs=48.2
Q ss_pred CCCCeEEEEEcCCCc-hHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC-C---CCcCEEEEcCCCCCC
Q 033165 1 MGGKKFAVLLCAEDS-EYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD-F---GSYDGYVITGSCNDA 71 (126)
Q Consensus 1 M~~~ki~Il~~~~~~-~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~-~---~~~d~iii~G~~~~~ 71 (126)
|+..+|+++..+... +.. .....-+.+.+++.|.++.++....+. .. .+. + .++||||+.+..
T Consensus 1 ~~~~~Ig~i~p~~~~~~f~----~~~~~g~~~~a~~~g~~~~~~~~~~~~-~~~~~~i~~~i~~~~~vDgiIi~~~~--- 72 (350)
T 3h75_A 1 MSLTSVVFLNPGNSTETFW----VSYSQFMQAAARDLGLDLRILYAERDP-QNTLQQARELFQGRDKPDYLMLVNEQ--- 72 (350)
T ss_dssp --CCEEEEEECSCTTCHHH----HHHHHHHHHHHHHHTCEEEEEECTTCH-HHHHHHHHHHHHSSSCCSEEEEECCS---
T ss_pred CCCCEEEEECCCCCCChHH----HHHHHHHHHHHHHcCCeEEEEECCCCH-HHHHHHHHHHHhcCCCCCEEEEeCch---
Confidence 788999999987765 321 123334556667779988887543210 00 000 1 389999997521
Q ss_pred CCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 72 HGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 72 ~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
. ...+.++.+.+.++|++-+.
T Consensus 73 -~------~~~~~~~~~~~~giPvV~~~ 93 (350)
T 3h75_A 73 -Y------VAPQILRLSQGSGIKLFIVN 93 (350)
T ss_dssp -S------HHHHHHHHHTTSCCEEEEEE
T ss_pred -h------hHHHHHHHHHhCCCcEEEEc
Confidence 1 12234556666789987664
No 112
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=86.84 E-value=1.2 Score=31.09 Aligned_cols=105 Identities=18% Similarity=0.153 Sum_probs=56.2
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh---CCCeEE-EEEccCCCCCCC-----------------CCCCCc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE---EGETWD-VFHVARGEFPDD-----------------DDFGSY 59 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~-~~~~~~~~~p~~-----------------~~~~~~ 59 (126)
|++|||++|...... ++++..+.+++.+ .|.+++ ++++.+ +|.. +.+..+
T Consensus 4 M~~mkIl~I~GS~r~-------~s~t~~la~~~~~~~~~g~~v~~~idL~~--lP~~~~~~~~~~~~~~~~~~~~~i~~A 74 (199)
T 4hs4_A 4 TSPLHFVTLLGSLRK-------ASFNAAVARALPEIAPEGIAITPLGSIGT--FPHYSQDVQEEGFPAPVLTMAQQIATA 74 (199)
T ss_dssp -CCEEEEEEECCCST-------TCHHHHHHHHHHHHCCTTEEEEECCCGGG--SCCCCHHHHHHCCCHHHHHHHHHHHHS
T ss_pred CCCCEEEEEEcCCCC-------CChHHHHHHHHHHHccCCCEEEEEEehhh--cCCCCccccccCCCHHHHHHHHHHHhC
Confidence 455799999887653 4677777766643 356677 666542 3321 124688
Q ss_pred CEEEEcCCCCCCCCCchHHHHHHHHHHH----HHhcCCcEEEEch--H----------HHHHHHHhCCccccC
Q 033165 60 DGYVITGSCNDAHGNDVWICKLIALLKQ----LDSLRKKVLGICF--G----------HQVRAITVFSSHINA 116 (126)
Q Consensus 60 d~iii~G~~~~~~~~~~~~~~~~~~i~~----~~~~~~PvlGIC~--G----------~Q~la~~~Gg~v~~~ 116 (126)
|+||+.---++- .-..-+..+.+++.. .+ .+||++-+.. | +.-+...+|..+...
T Consensus 75 D~iVi~tP~Y~~-s~p~~LK~~iD~~~~~~~~~l-~gK~v~~v~tsgg~~g~~~a~~~Lr~il~~lg~~~v~~ 145 (199)
T 4hs4_A 75 DAVVIVTPEYNY-SVPGVLKNAIDWLSRVSPQPL-AGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNR 145 (199)
T ss_dssp SEEEEEECCBTT-BCCHHHHHHHHHHTTSSSCTT-TTCEEEEEEECSSSSCSHHHHHHHHHHHHHTTCEECCS
T ss_pred CEEEEEcCccCC-CcCHHHHHHHHHhcccCCccc-CCCEEEEEEeCCCCcccHHHHHHHHHHHHHcCCEEcCC
Confidence 999886322211 111233444444432 11 4788766654 3 122234578877653
No 113
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=86.83 E-value=1.3 Score=29.73 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR 47 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 47 (126)
||||+|+...+.. ++.+..+.+.+.+ +.+++.+++..
T Consensus 3 mMkilii~~S~r~-------~g~t~~la~~~~~-~~~~~~~~l~~ 39 (184)
T 1rli_A 3 AMKIAVINGGTRS-------GGNTDVLAEKAVQ-GFDAEHIYLQK 39 (184)
T ss_dssp --CEEEEESSCSS-------CCHHHHHHHHHHT-TTCCEEEEC--
T ss_pred CcEEEEEECCCCC-------CccHHHHHHHHHc-CCeEEEEEcCC
Confidence 5699999887652 2566677777754 45666666543
No 114
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=86.80 E-value=1 Score=32.32 Aligned_cols=85 Identities=13% Similarity=0.107 Sum_probs=46.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----CCC--CCCcCEEEEcCCCCCCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----DDD--FGSYDGYVITGSCNDAHG 73 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----~~~--~~~~d~iii~G~~~~~~~ 73 (126)
|.+.+|+++..+..++... ....-+.+.+++.|.++.++......-+. .+. -.++||||+.+.....
T Consensus 1 ~~~~~Igvi~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~-- 74 (297)
T 3rot_A 1 MVRDKYYLITHGSQDPYWT----SLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA-- 74 (297)
T ss_dssp --CCEEEEECSCCCSHHHH----HHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST--
T ss_pred CceEEEEEEecCCCCchHH----HHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH--
Confidence 7788999998877554321 22334556667779888877643100010 001 1579999997663221
Q ss_pred CchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 74 NDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 74 ~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
....++.+.+.++|++-+
T Consensus 75 -------~~~~~~~~~~~giPvV~~ 92 (297)
T 3rot_A 75 -------FSKSLQRANKLNIPVIAV 92 (297)
T ss_dssp -------THHHHHHHHHHTCCEEEE
T ss_pred -------HHHHHHHHHHCCCCEEEE
Confidence 112344455568887654
No 115
>4ici_A Putative flavoprotein; PF12682 family protein, flavodoxin_4, structural genomics, J center for structural genomics, JCSG; HET: MSE FMN EPE; 1.40A {Bacteroides eggerthii}
Probab=86.75 E-value=3.2 Score=28.10 Aligned_cols=14 Identities=14% Similarity=0.123 Sum_probs=10.1
Q ss_pred CCCCeEEEEEcCCC
Q 033165 1 MGGKKFAVLLCAED 14 (126)
Q Consensus 1 M~~~ki~Il~~~~~ 14 (126)
|++||++|+.....
T Consensus 11 ~~~mkilIvY~S~t 24 (171)
T 4ici_A 11 HSNSKILVAYFSAT 24 (171)
T ss_dssp --CCCEEEEECCSS
T ss_pred cCCCCEEEEEECCC
Confidence 56889999988765
No 116
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=85.31 E-value=1 Score=30.83 Aligned_cols=92 Identities=18% Similarity=0.179 Sum_probs=49.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC---eEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCC-C
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE---TWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCND-A 71 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~-~ 71 (126)
|+..||+|+..+....-...- ..-..+.|.+.|. +++++++. .-|+|.. ..-.+||+||-.|---. .
T Consensus 8 ~~~~ri~IV~arfn~~I~~~L----l~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~ 83 (158)
T 1di0_A 8 KTSFKIAFIQARWHADIVDEA----RKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGG 83 (158)
T ss_dssp -CCEEEEEEEECTTHHHHHHH----HHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEECCCCS
T ss_pred CCCCEEEEEEEeCcHHHHHHH----HHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCC
Confidence 445799999998876432221 1123344555553 46777653 2233321 01257999999986421 1
Q ss_pred CCCchHHHH--HHHHHHHHHhcCCcEE
Q 033165 72 HGNDVWICK--LIALLKQLDSLRKKVL 96 (126)
Q Consensus 72 ~~~~~~~~~--~~~~i~~~~~~~~Pvl 96 (126)
....+++.. ...+.+-.++.++||.
T Consensus 84 T~Hfd~Va~~vs~Gl~~v~L~~~vPV~ 110 (158)
T 1di0_A 84 IYDHDFVATAVINGMMQVQLETEVPVL 110 (158)
T ss_dssp SBCCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred CcHHHHHHHHHHHHHHHHHhhcCCCEE
Confidence 112233332 3455666677899964
No 117
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=84.86 E-value=2.1 Score=30.64 Aligned_cols=85 Identities=11% Similarity=0.051 Sum_probs=45.3
Q ss_pred CCC-CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCCCCCCCC
Q 033165 1 MGG-KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGSCNDAHG 73 (126)
Q Consensus 1 M~~-~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~~~~~~~ 73 (126)
|++ ++|+++..+...+... .+..-+.+.+++.|.++.++.....+... .+. -.++||||+.+.....
T Consensus 1 ~s~~~~I~~i~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~-- 74 (305)
T 3g1w_A 1 MSLNETYMMITFQSGMDYWK----RCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE-- 74 (305)
T ss_dssp ----CEEEEEESSTTSTHHH----HHHHHHHHHHHHHTCEEEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT--
T ss_pred CCCCceEEEEEccCCChHHH----HHHHHHHHHHHHcCCEEEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH--
Confidence 443 6889988877654322 23334556667778888774322211000 000 1479999998763221
Q ss_pred CchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 74 NDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 74 ~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++++.+.++|++-+
T Consensus 75 -------~~~~~~~~~~~~iPvV~~ 92 (305)
T 3g1w_A 75 -------LTDTINKAVDAGIPIVLF 92 (305)
T ss_dssp -------THHHHHHHHHTTCCEEEE
T ss_pred -------HHHHHHHHHHCCCcEEEE
Confidence 112344555678888654
No 118
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=84.48 E-value=1.2 Score=31.06 Aligned_cols=58 Identities=9% Similarity=0.007 Sum_probs=39.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC-CC------CCCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP-DD------DDFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p-~~------~~~~~~d~iii~ 65 (126)
||||+||...+.... .++...+.+.+++.+.+++++++.+.... .+ +.+..+|+||+.
T Consensus 1 MmkiLiI~gsp~~~~-----s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~ 65 (192)
T 3f2v_A 1 MPKTLIILAHPNISQ-----STVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQ 65 (192)
T ss_dssp -CCEEEEECCTTGGG-----CSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEE
T ss_pred CCEEEEEEeCCCccH-----HHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEE
Confidence 579999998876531 25777788888888999999988642111 11 135689998885
No 119
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=84.41 E-value=0.38 Score=32.84 Aligned_cols=71 Identities=13% Similarity=-0.006 Sum_probs=42.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-----CCeEEEEEccCCCCCCC----CC-C--CCcCEEEEcCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-----GETWDVFHVARGEFPDD----DD-F--GSYDGYVITGSCND 70 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-----g~~~~~~~~~~~~~p~~----~~-~--~~~d~iii~G~~~~ 70 (126)
++|++||-++... ..-+.+++...++.+.++.. |.++..+.+..++.... .. + .++|.||.+||.+.
T Consensus 5 ~~rv~IistGde~-~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~g~ 83 (167)
T 1uuy_A 5 EYKVAILTVSDTV-SAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVPDEVERIKDILQKWSDVDEMDLILTLGGTGF 83 (167)
T ss_dssp SEEEEEEEECHHH-HTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSS
T ss_pred CcEEEEEEECCcc-cCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCC
Confidence 5799999886532 11112345556778888877 88776655443331110 01 1 36999999999654
Q ss_pred CCCC
Q 033165 71 AHGN 74 (126)
Q Consensus 71 ~~~~ 74 (126)
..+|
T Consensus 84 g~~D 87 (167)
T 1uuy_A 84 TPRD 87 (167)
T ss_dssp STTC
T ss_pred CCCC
Confidence 4333
No 120
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=84.11 E-value=1.8 Score=29.80 Aligned_cols=44 Identities=11% Similarity=0.071 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHH----HHHhhCC--CeEEEEEcc--CCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFV----RMLAEEG--ETWDVFHVA--RGEFP 51 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~l~~~g--~~~~~~~~~--~~~~p 51 (126)
|+||+||...+... .++++..+. +.+++.+ .+++++++. +..+|
T Consensus 1 M~kilii~gS~r~~-----~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~ 52 (208)
T 2hpv_A 1 MSKLLVVKAHPLTK-----EESRSVRALETFLASYRETNPSDEIEILDVYAPETNMP 52 (208)
T ss_dssp -CEEEEEECCSSCT-----TTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCC
T ss_pred CCeEEEEEecCCCC-----CCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCC
Confidence 46999999887630 124454444 4445555 899999987 54443
No 121
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=83.20 E-value=1.2 Score=30.69 Aligned_cols=70 Identities=10% Similarity=-0.085 Sum_probs=42.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh---hCCCeEEEEEccCCCCCCC-----CCCC--CcCEEEEcCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA---EEGETWDVFHVARGEFPDD-----DDFG--SYDGYVITGSCNDAH 72 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~~~~~~~~~~p~~-----~~~~--~~d~iii~G~~~~~~ 72 (126)
++|++||-++.... .-+.+++...++.++|+ +.|.++ .+.+..++.... +.++ ++|.||.+||-+...
T Consensus 5 ~~rv~IistGdE~~-~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG~g~g~ 82 (178)
T 2pbq_A 5 KAVIGVVTISDRAS-KGIYEDISGKAIIDYLKDVIITPFEV-EYRVIPDERDLIEKTLIELADEKGCSLILTTGGTGPAP 82 (178)
T ss_dssp CCEEEEEEECHHHH-HTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred CCEEEEEEeCCcCC-CCCeecchHHHHHHHHHHHHhCCCEE-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCC
Confidence 46999998876421 11224566778888887 889988 444433321100 0122 699999999965443
Q ss_pred CC
Q 033165 73 GN 74 (126)
Q Consensus 73 ~~ 74 (126)
+|
T Consensus 83 ~D 84 (178)
T 2pbq_A 83 RD 84 (178)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 122
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=83.13 E-value=5.7 Score=28.65 Aligned_cols=91 Identities=16% Similarity=0.084 Sum_probs=50.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh---hCCCeEEEEEccCCCCCCCCC-------------------CCCcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA---EEGETWDVFHVARGEFPDDDD-------------------FGSYD 60 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~~~~~~~~~~p~~~~-------------------~~~~d 60 (126)
.|||+|++-++... .++.+.+.++ ..+.++..+.+..+. +..+. -.++|
T Consensus 1 ~mrilvINPnts~~--------~T~~i~~~~~~~~~p~~~i~~~t~~~gp-~~i~~~~d~~~a~~~l~~~~~~l~~~g~d 71 (245)
T 3qvl_A 1 SVRIQVINPNTSLA--------MTETIGAAARAVAAPGTEILAVCPRAGV-PSIEGHFDEAIAAVGVLEQIRAGREQGVD 71 (245)
T ss_dssp CEEEEEECSSCCHH--------HHHHHHHHHHHHCCTTEEEEEECCSSSC-SSCCSHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred CCEEEEEeCCCCHH--------HHHHHHHHHHHhcCCCCEEEEEeCCCCc-hhhcChhHHHHHHHHHHHHHHHHHHCCCC
Confidence 36999998888753 3445555544 346666666654321 11111 13689
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHHhCCccc
Q 033165 61 GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAITVFSSHI 114 (126)
Q Consensus 61 ~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~~Gg~v~ 114 (126)
++++.-...+ . + +.+++. .++||+||.--.-..+..+|.++.
T Consensus 72 ~iviaCnt~~-----~----l-~~lr~~--~~iPvigi~e~~~~~a~~~~~rig 113 (245)
T 3qvl_A 72 GHVIASFGDP-----G----L-LAAREL--AQGPVIGIAEAAMHMATMVATRFS 113 (245)
T ss_dssp EEEEC-CCCT-----T----H-HHHHHH--CSSCEEEHHHHHHHHHHHHCSCEE
T ss_pred EEEEeCCChh-----H----H-HHHHHH--cCCCEECccHHHHHHHHHcCCEEE
Confidence 9999754221 1 1 234443 379999996444334445676554
No 123
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=82.82 E-value=4 Score=28.88 Aligned_cols=83 Identities=10% Similarity=0.035 Sum_probs=46.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCC--CCCcCEEEEcCCCCCCCCCchH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDD--FGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~--~~~~d~iii~G~~~~~~~~~~~ 77 (126)
..+|+|+..+...+... ....-+.+.+++.|.++.++....+.-.. .+. -..+||||+.+.....
T Consensus 8 ~~~Ig~i~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~------ 77 (293)
T 3l6u_A 8 RNIVGFTIVNDKHEFAQ----RLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVY------ 77 (293)
T ss_dssp -CEEEEEESCSCSHHHH----HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTT------
T ss_pred CcEEEEEEecCCcHHHH----HHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHH------
Confidence 36899998776654321 23334556677789988887643210000 000 1479999998653211
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 033165 78 ICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++.+.+.++|++-+
T Consensus 78 ---~~~~~~~~~~~~iPvV~~ 95 (293)
T 3l6u_A 78 ---IGSAIEEAKKAGIPVFAI 95 (293)
T ss_dssp ---THHHHHHHHHTTCCEEEE
T ss_pred ---HHHHHHHHHHcCCCEEEe
Confidence 112344555668888765
No 124
>3edo_A Flavoprotein, putative Trp repressor binding protein; YP_193882.1, flavoprotein in complex with FMN, structural genomics; HET: MSE FMN; 1.20A {Lactobacillus acidophilus ncfm}
Probab=82.77 E-value=5.1 Score=26.27 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=18.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHH-hhC-CCeE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRML-AEE-GETW 40 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l-~~~-g~~~ 40 (126)
|+|++|+..... ..+..+.+.+ +.. +.++
T Consensus 3 ~~kilIvY~S~t---------GnT~~iA~~Ia~~l~~~~~ 33 (151)
T 3edo_A 3 AKKTLILYYSWS---------GETKKMAEKINSEIKDSEL 33 (151)
T ss_dssp CCCEEEEECCSS---------SHHHHHHHHHHHHSTTCEE
T ss_pred CCcEEEEEECCC---------CcHHHHHHHHHHhccCCCE
Confidence 458999988765 2455577777 333 5543
No 125
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=82.76 E-value=3.6 Score=28.07 Aligned_cols=101 Identities=20% Similarity=0.142 Sum_probs=58.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc-CCCCCCC----CCC-----CCcCEEEEcCCCCC-CC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA-RGEFPDD----DDF-----GSYDGYVITGSCND-AH 72 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~p~~----~~~-----~~~d~iii~G~~~~-~~ 72 (126)
.||+|+..+....-... -..-..+.|.+.|.+++++++. .-|+|.. ..- .+||+||-.|---. ..
T Consensus 13 ~ri~IV~arfn~~I~~~----Ll~gA~~~l~~~G~~i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T 88 (157)
T 2i0f_A 13 PHLLIVEARFYDDLADA----LLDGAKAALDEAGATYDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGET 88 (157)
T ss_dssp CEEEEEEECSSHHHHHH----HHHHHHHHHHHTTCEEEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSS
T ss_pred cEEEEEEEeCcHHHHHH----HHHHHHHHHHHcCCCeEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCc
Confidence 59999999887643222 1122345666778888888764 1233321 011 57999998875310 11
Q ss_pred CCchHHHH--HHHHHHHHHhcCCcE-EEE---chHHHHHHHH
Q 033165 73 GNDVWICK--LIALLKQLDSLRKKV-LGI---CFGHQVRAIT 108 (126)
Q Consensus 73 ~~~~~~~~--~~~~i~~~~~~~~Pv-lGI---C~G~Q~la~~ 108 (126)
...+++.+ ...+.+-.++.++|| +|| =-=.|.+.++
T Consensus 89 ~Hfd~Va~~v~~gl~~vsl~~~vPV~~GVLT~~~~eQA~~Ra 130 (157)
T 2i0f_A 89 YHFDIVSNESCRALTDLSVEESIAIGNGILTVENEEQAWVHA 130 (157)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTCCEEEEEEEESSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHh
Confidence 12233333 345566667789995 344 2457888886
No 126
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=81.34 E-value=0.43 Score=33.47 Aligned_cols=71 Identities=13% Similarity=0.070 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh---CCCeEEEEEccCCCCCCC----CC-CC--CcCEEEEcCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE---EGETWDVFHVARGEFPDD----DD-FG--SYDGYVITGSCNDAH 72 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~~p~~----~~-~~--~~d~iii~G~~~~~~ 72 (126)
++|++||-+++.--. -..+++...++.++|++ .|.++..+.+..++.... .. ++ ++|.||.+||.+...
T Consensus 14 ~~rv~IistGdEl~~-g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVIttGGtg~g~ 92 (189)
T 1jlj_A 14 QIRVGVLTVSDSCFR-NLAEDRSGINLKDLVQDPSLLGGTISAYKIVPDEIEEIKETLIDWCDEKELNLILTTGGTGFAP 92 (189)
T ss_dssp CCEEEEEEECHHHHT-TSSCCHHHHHHHHHHHCTTTTCCEEEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEESCCSSST
T ss_pred CCEEEEEEECCccCC-CcccchHHHHHHHHHhchhcCCcEEEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEcCCCCCCC
Confidence 579999988765211 01235566788899987 788876655443331110 01 12 689999999965433
Q ss_pred CC
Q 033165 73 GN 74 (126)
Q Consensus 73 ~~ 74 (126)
+|
T Consensus 93 ~D 94 (189)
T 1jlj_A 93 RD 94 (189)
T ss_dssp TC
T ss_pred cc
Confidence 33
No 127
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=80.99 E-value=8 Score=29.29 Aligned_cols=91 Identities=8% Similarity=-0.004 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
++|++|+.....- +.+. ....+.+.+++.+.+++++++.+.+... .+++.++|+||+.-..+.- ...+-+..+
T Consensus 256 ~~kv~iiy~S~~G-nT~~----la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~~-~~~~~~k~f 329 (414)
T 2q9u_A 256 QKKVTVVLDSMYG-TTHR----MALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLNN-TMMPSVAAA 329 (414)
T ss_dssp CSEEEEEECCSSS-HHHH----HHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTT-BCCHHHHHH
T ss_pred CCeEEEEEECCCc-hHHH----HHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccCc-CchHHHHHH
Confidence 5799999876642 2221 2334555566678889888875422110 0135689999887543322 112223333
Q ss_pred HHHHHHHHh-cCCcEEEEc
Q 033165 82 IALLKQLDS-LRKKVLGIC 99 (126)
Q Consensus 82 ~~~i~~~~~-~~~PvlGIC 99 (126)
.+.+....- .++|+.-+|
T Consensus 330 ld~l~~~~~~~~K~~~~~~ 348 (414)
T 2q9u_A 330 LNYVRGLTLIKGKPAFAFG 348 (414)
T ss_dssp HHHHHHHTTTTTSBEEEEE
T ss_pred HHHHHhhcccCCCEEEEEE
Confidence 333332222 577876544
No 128
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=80.77 E-value=12 Score=26.17 Aligned_cols=59 Identities=15% Similarity=0.017 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
..+|+++..+..++.. ..+..-+.+.+++.|.++.++....+. .....+ .+||||+.+.
T Consensus 8 ~~~Igvi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~-~vdgiI~~~~ 66 (277)
T 3cs3_A 8 TNIIGVYLADYGGSFY----GELLEGIKKGLALFDYEMIVCSGKKSH-LFIPEK-MVDGAIILDW 66 (277)
T ss_dssp CCEEEEEECSSCTTTH----HHHHHHHHHHHHTTTCEEEEEESTTTT-TCCCTT-TCSEEEEECT
T ss_pred CcEEEEEecCCCChhH----HHHHHHHHHHHHHCCCeEEEEeCCCCH-HHHhhc-cccEEEEecC
Confidence 3578998765443321 123334556667789888877653221 111123 8999999876
No 129
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=81.76 E-value=0.32 Score=34.09 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=32.3
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC---CCeEEEE-EccCC-----C-----CC-----CCCCCCCcCEE
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE---GETWDVF-HVARG-----E-----FP-----DDDDFGSYDGY 62 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~~~-~~~~~-----~-----~p-----~~~~~~~~d~i 62 (126)
.+|||++|...... ++++..+.+++.+. |.+++++ ++.+- + .| ..+.+..+|+|
T Consensus 5 ~~mkIliI~gS~r~-------~s~t~~la~~~~~~~~~g~~v~~i~dl~~lp~~~~~~~~~~~~~~~~~~~~~i~~AD~i 77 (199)
T 3s2y_A 5 SPLHFVTLLGSLRK-------ASFNAAVARALPEIAPEGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAV 77 (199)
Confidence 45799999876642 24444455444221 6777777 65420 0 00 01346788998
Q ss_pred EEc
Q 033165 63 VIT 65 (126)
Q Consensus 63 ii~ 65 (126)
|+.
T Consensus 78 Ii~ 80 (199)
T 3s2y_A 78 VIV 80 (199)
Confidence 885
No 130
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=80.48 E-value=1 Score=30.99 Aligned_cols=102 Identities=15% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEcc-CCCCCCC-CC-CCCcCEEEEcCCCCC-CCCCchH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVA-RGEFPDD-DD-FGSYDGYVITGSCND-AHGNDVW 77 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~-~~~~p~~-~~-~~~~d~iii~G~~~~-~~~~~~~ 77 (126)
..||+|+..+....-... -..-..+.|.+.|. +++++++. .-|+|.. .. .+.||+||-.|---. .....++
T Consensus 17 ~~ri~IV~arfn~~I~~~----Ll~gA~~~l~~~G~~~i~v~~VPGafEiP~aak~la~~yDavIaLG~VIrG~T~Hfd~ 92 (160)
T 2c92_A 17 GVRLAIVASSWHGKICDA----LLDGARKVAAGCGLDDPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDY 92 (160)
T ss_dssp TCCEEEEEECSSHHHHHH----HHHHHHHHHHHTTCSCCEEEEESSGGGHHHHHHHHHTSCSEEEEEEEEECCSSTHHHH
T ss_pred CCEEEEEEEeCcHHHHHH----HHHHHHHHHHHcCCCceEEEECCcHHHHHHHHHHHHhcCCEEEEEeeeecCCchHHHH
Confidence 479999999887642222 11223455666776 67777653 2233321 00 246999999886311 1112233
Q ss_pred HHH--HHHHHHHHHhcCCcEE-EE--ch-HHHHHHHH
Q 033165 78 ICK--LIALLKQLDSLRKKVL-GI--CF-GHQVRAIT 108 (126)
Q Consensus 78 ~~~--~~~~i~~~~~~~~Pvl-GI--C~-G~Q~la~~ 108 (126)
+.. ...+.+-.++.++||. || |- =.|.+.++
T Consensus 93 Va~~vs~Gl~~v~L~~~vPV~~GVLT~~~~eQA~~Ra 129 (160)
T 2c92_A 93 VCDAVTQGLTRVSLDSSTPIANGVLTTNTEEQALDRA 129 (160)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEEEEESSHHHHHTTB
T ss_pred HHHHHHHHHHHHHhhcCCCEEEEEcCCCCHHHHHHHh
Confidence 332 3455666677899964 42 43 56766664
No 131
>1ehs_A STB, heat-stable enterotoxin B; disulfide; NMR {Escherichia coli} SCOP: g.2.1.1
Probab=80.32 E-value=0.22 Score=26.38 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=13.3
Q ss_pred cEEEEchHHHHHHHHhC
Q 033165 94 KVLGICFGHQVRAITVF 110 (126)
Q Consensus 94 PvlGIC~G~Q~la~~~G 110 (126)
-..|-|||.|++..+-|
T Consensus 31 gtagacfgaqimvaakg 47 (48)
T 1ehs_A 31 GTAGACFGAQIMVAAKG 47 (48)
T ss_dssp SSCCTTTTTHHHHTTTT
T ss_pred CccccccchhHhhhccc
Confidence 36788999999987654
No 132
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=79.82 E-value=3.5 Score=27.41 Aligned_cols=59 Identities=12% Similarity=0.126 Sum_probs=32.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~ 67 (126)
||++|+.....- +++. ....+.+.++..|.+++++++...+... ..++.++|+||+.-.
T Consensus 1 Mkv~IvY~S~tG-nT~~----~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gsp 60 (161)
T 3hly_A 1 MSVLIGYLSDYG-YSDR----LSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTP 60 (161)
T ss_dssp -CEEEEECTTST-THHH----HHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECC
T ss_pred CEEEEEEECCCh-HHHH----HHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcC
Confidence 578888776542 2221 2334556666778889888875322100 012346898877544
No 133
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=79.66 E-value=6.6 Score=24.85 Aligned_cols=55 Identities=16% Similarity=0.027 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
++||+++-...-.... ....+.+..++.|.++++......++. +.+++||.|++.
T Consensus 6 ~mkIlL~C~aGmSTsl------lv~km~~~a~~~gi~v~i~a~~~~~~~--~~~~~~DvvLLg 60 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQ------LANAINEGANLTEVRVIANSGAYGAHY--DIMGVYDLIILA 60 (108)
T ss_dssp CEEEEEEESSSSHHHH------HHHHHHHHHHHHTCSEEEEEEETTSCT--TTGGGCSEEEEC
T ss_pred CceEEEECCCCCCHHH------HHHHHHHHHHHCCCceEEEEcchHHHH--hhccCCCEEEEC
Confidence 4688888776654322 223455666777999988654333332 246789988884
No 134
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=79.62 E-value=1.4 Score=27.18 Aligned_cols=53 Identities=8% Similarity=-0.046 Sum_probs=28.1
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
|+++||+|++.+.. +...+...|+..+..+..+.-........ .-. +|.+|+-
T Consensus 1 M~~~~ilivdd~~~----------~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-~~~-~dlvi~D 53 (135)
T 3eqz_A 1 MSLNRVFIVDDDTL----------TCNLLKTIVEPIFGNVEAFQHPRAFLTLS-LNK-QDIIILD 53 (135)
T ss_dssp --CCEEEEECSCHH----------HHHHHHHHHTTTCSCEEEESCHHHHTTSC-CCT-TEEEEEE
T ss_pred CCcceEEEEeCCHH----------HHHHHHHHHHhhcceeeeecCHHHHHHhh-ccC-CCEEEEe
Confidence 88999999965443 22346777877766665554221111111 113 7777774
No 135
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=79.59 E-value=4.2 Score=30.43 Aligned_cols=94 Identities=15% Similarity=0.016 Sum_probs=52.2
Q ss_pred CC-CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC-CCCCC---CCCCCCcCEEEEcCCCCCCCCCc
Q 033165 1 MG-GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR-GEFPD---DDDFGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 1 M~-~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~-~~~p~---~~~~~~~d~iii~G~~~~~~~~~ 75 (126)
|. |+|++|+-+...... + ....+.++|++.+.++.++.... ++... ....+.+|.||+.||-
T Consensus 26 m~~~~~~~vi~Np~sg~~--~----~~~~i~~~l~~~g~~~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GGD------- 92 (332)
T 2bon_A 26 MAEFPASLLILNGKSTDN--L----PLREAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGGD------- 92 (332)
T ss_dssp ----CCEEEEECSSSTTC--H----HHHHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEESH-------
T ss_pred hhhcceEEEEECCCCCCC--c----hHHHHHHHHHHcCCcEEEEEecCcchHHHHHHHHHhcCCCEEEEEccc-------
Confidence 44 468888877444321 1 12346678888898888765321 11000 0001368999999992
Q ss_pred hHHHHHHHHHHHHH----hcCCcEEEEchHHHH-HHHHhC
Q 033165 76 VWICKLIALLKQLD----SLRKKVLGICFGHQV-RAITVF 110 (126)
Q Consensus 76 ~~~~~~~~~i~~~~----~~~~PvlGIC~G~Q~-la~~~G 110 (126)
..+.+.++.+. ..++|+..|=.|--= +++.+|
T Consensus 93 ---GTl~~v~~~l~~~~~~~~~plgiiP~Gt~N~fa~~l~ 129 (332)
T 2bon_A 93 ---GTINEVSTALIQCEGDDIPALGILPLGTANDFATSVG 129 (332)
T ss_dssp ---HHHHHHHHHHHHCCSSCCCEEEEEECSSSCHHHHHTT
T ss_pred ---hHHHHHHHHHhhcccCCCCeEEEecCcCHHHHHHhcC
Confidence 33455566655 456787666455433 566665
No 136
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=77.68 E-value=3.7 Score=29.51 Aligned_cols=83 Identities=18% Similarity=0.059 Sum_probs=46.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCC--CCCcCEEEEcCCCCCCCCCchH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDD--FGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~--~~~~d~iii~G~~~~~~~~~~~ 77 (126)
+.+|+|+..+...+.. ..+..-+.+.+++.|.++.++....+.-.. .+. -..+||||+.+.....
T Consensus 2 ~~~Igvi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~------ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERW----QKDRDIFVKKAESLGAKVFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV------ 71 (313)
T ss_dssp -CEEEEEESCCSSSTT----HHHHHHHHHHHHHTSCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS------
T ss_pred CcEEEEEeCCCCChHH----HHHHHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh------
Confidence 4688999876554321 123344667777889888877643210000 000 1579999998763221
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 033165 78 ICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++.+.+.++|++-+
T Consensus 72 ---~~~~~~~~~~~~iPvV~~ 89 (313)
T 3m9w_A 72 ---LSNVVKEAKQEGIKVLAY 89 (313)
T ss_dssp ---CHHHHHHHHTTTCEEEEE
T ss_pred ---hHHHHHHHHHCCCeEEEE
Confidence 112344555567887654
No 137
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=77.42 E-value=10 Score=26.22 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=46.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~~~~~~~~~ 75 (126)
+.+|+|+-.+..++.. ..+..-+.+.+++.|.++.++....+ +.. +. -..+||||+.+..... +
T Consensus 2 s~~Igvi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~-- 72 (272)
T 3o74_A 2 TRTLGFILPDLENPSY----ARIAKQLEQGARARGYQLLIASSDDQ--PDSERQLQQLFRARRCDALFVASCLPPE-D-- 72 (272)
T ss_dssp CCEEEEEESCTTCHHH----HHHHHHHHHHHHHTTCEEEEEECTTC--HHHHHHHHHHHHHTTCSEEEECCCCCSS-C--
T ss_pred ceEEEEEeCCCcChhH----HHHHHHHHHHHHHCCCEEEEEeCCCC--HHHHHHHHHHHHHcCCCEEEEecCcccc-H--
Confidence 4689999887665432 22344455677778998888764321 100 00 1479999998764211 1
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
+ .++.+.+.++|+.-+
T Consensus 73 ~-------~~~~~~~~~iPvV~~ 88 (272)
T 3o74_A 73 D-------SYRELQDKGLPVIAI 88 (272)
T ss_dssp C-------HHHHHHHTTCCEEEE
T ss_pred H-------HHHHHHHcCCCEEEE
Confidence 1 123344567887654
No 138
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=77.15 E-value=3.2 Score=30.81 Aligned_cols=57 Identities=16% Similarity=0.127 Sum_probs=35.9
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhhCCCeEEEEEccCCCCCCC-------------CCCCCcCEEEE
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAEEGETWDVFHVARGEFPDD-------------DDFGSYDGYVI 64 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~~g~~~~~~~~~~~~~p~~-------------~~~~~~d~iii 64 (126)
.++||++|...... ++++..+.+ .+++.|.+++++++.+..++.. +.+...|+||+
T Consensus 57 ~~mKILiI~GS~R~-------~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~ 129 (279)
T 2fzv_A 57 PPVRILLLYGSLRA-------RSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW 129 (279)
T ss_dssp SCCEEEEEESCCSS-------SCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred CCCEEEEEEeCCCC-------CCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEE
Confidence 46899999887753 355555554 4455689999988764322211 12346788888
Q ss_pred c
Q 033165 65 T 65 (126)
Q Consensus 65 ~ 65 (126)
.
T Consensus 130 a 130 (279)
T 2fzv_A 130 C 130 (279)
T ss_dssp E
T ss_pred E
Confidence 5
No 139
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=76.90 E-value=2.3 Score=28.49 Aligned_cols=57 Identities=5% Similarity=0.001 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
|+|++|+.....- +.+. +...+.+.++..|.+++++++.+.+ ..++.++|.||+.-+
T Consensus 9 ~~ki~I~Y~S~tG-nT~~----~A~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~d~ii~g~p 65 (167)
T 1ykg_A 9 MPGITIISASQTG-NARR----VAEALRDDLLAAKLNVKLVNAGDYK---FKQIASEKLLIVVTS 65 (167)
T ss_dssp ---CEEEEECSSS-HHHH----HHHHHHHHHHHHTCCCEEEEGGGCC---GGGGGGCSEEEEEEE
T ss_pred CCeEEEEEECCch-HHHH----HHHHHHHHHHHCCCceEEeehhhCC---HHHhccCCeEEEEEc
Confidence 4688888765542 2221 3445666666668888888875322 235678998888544
No 140
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=76.84 E-value=6.4 Score=27.43 Aligned_cols=44 Identities=11% Similarity=0.045 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhhC--CCeEEEEEccCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAEE--GETWDVFHVARGEFP 51 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~~--g~~~~~~~~~~~~~p 51 (126)
|+||++|...+.. ..++++..+.+ .+++. |.+++++++.+.++|
T Consensus 4 M~kiLiI~gSpr~-----~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P 53 (211)
T 3p0r_A 4 MTKVLFVKANNRP-----AEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELP 53 (211)
T ss_dssp CCEEEEEECCCSC-----TTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCC
T ss_pred cCEEEEEEeCCCC-----CCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCC
Confidence 5799999988761 01355554544 33444 889999998765554
No 141
>2b99_A Riboflavin synthase; lumazine riboflavin, transferase; HET: RDL; 2.22A {Methanocaldococcus jannaschii} PDB: 2b98_A*
Probab=76.46 E-value=9.7 Score=25.92 Aligned_cols=86 Identities=13% Similarity=0.039 Sum_probs=48.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEE--EEEcc-CCCCCCC----CCCCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWD--VFHVA-RGEFPDD----DDFGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~--~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~~~~~~ 75 (126)
+.||+|+..+..... ...-..+.|.+.|.+.+ ++++. .-|+|.. ..-.+||+||-.|-. ......
T Consensus 2 ~~ri~IV~arfn~~~-------Ll~gA~~~L~~~G~~~~i~~~~VPGafEiP~aak~la~~~~yDavIaLG~V-G~T~Hf 73 (156)
T 2b99_A 2 TKKVGIVDTTFARVD-------MASIAIKKLKELSPNIKIIRKTVPGIKDLPVACKKLLEEEGCDIVMALGMP-GKAEKD 73 (156)
T ss_dssp CCEEEEEEESSCSSC-------CHHHHHHHHHHHCTTCEEEEEEESSGGGHHHHHHHHHHHSCCSEEEEEECC-CSSHHH
T ss_pred CcEEEEEEEecchHH-------HHHHHHHHHHHcCCCCeEEEEECCcHHHHHHHHHHHHhcCCCCEEEEeccc-CCcchh
Confidence 359999999887522 22234456666665433 34442 2233321 011579999999987 222222
Q ss_pred hHHHH--HHHHHHHHHhcCCcEE
Q 033165 76 VWICK--LIALLKQLDSLRKKVL 96 (126)
Q Consensus 76 ~~~~~--~~~~i~~~~~~~~Pvl 96 (126)
+++.. ...+.+-.++.++||.
T Consensus 74 d~Va~~vs~Gl~~v~L~~~vPV~ 96 (156)
T 2b99_A 74 KVCAHEASLGLMLAQLMTNKHII 96 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHHHHhhhCCCEE
Confidence 44433 3345555667899975
No 142
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=75.90 E-value=4.3 Score=28.06 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhhC--CCeEEEEEccCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAEE--GETWDVFHVARGEFP 51 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~~--g~~~~~~~~~~~~~p 51 (126)
||||++|...+..+ +|++..+.+ .+++. |.+++++++.+..+|
T Consensus 1 MmkiLii~gSpr~~------~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~~p 49 (212)
T 3r6w_A 1 MSRILAVHASPRGE------RSQSRRLAEVFLAAYREAHPQARVARREVGRVPLP 49 (212)
T ss_dssp CCCEEEEECCSCST------TCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSCCC
T ss_pred CCEEEEEEeCCCCC------CCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCC
Confidence 57999999887642 245554443 44444 889999998755444
No 143
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=75.48 E-value=4 Score=28.85 Aligned_cols=82 Identities=11% Similarity=0.106 Sum_probs=47.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-C---CC--CCCcCEEEEcCCCCCCCCCch
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-D---DD--FGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~---~~--~~~~d~iii~G~~~~~~~~~~ 76 (126)
..+|+++..+...+... ....-+.+.+++.|.++.++....+. .. . +. -.++||||+.+...
T Consensus 5 ~~~Ig~i~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~~~~------- 72 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDL----KAYQAQIAEIERLGGTAIALDAGRND-QTQVSQIQTLIAQKPDAIIEQLGNL------- 72 (291)
T ss_dssp TCEEEEEESCCSSHHHH----HHHHHHHHHHHHTTCEEEEEECTTCH-HHHHHHHHHHHHHCCSEEEEESSCH-------
T ss_pred CcEEEEEeCCCCChHHH----HHHHHHHHHHHHcCCEEEEEcCCCCH-HHHHHHHHHHHHcCCCEEEEeCCCh-------
Confidence 46899998876654322 23344556777889888887643210 00 0 00 14799999986521
Q ss_pred HHHHHHHHHHHHHhcCCcEEEE
Q 033165 77 WICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGI 98 (126)
....+.++.+.+.++|++-+
T Consensus 73 --~~~~~~~~~~~~~~iPvV~~ 92 (291)
T 3l49_A 73 --DVLNPWLQKINDAGIPLFTV 92 (291)
T ss_dssp --HHHHHHHHHHHHTTCCEEEE
T ss_pred --hhhHHHHHHHHHCCCcEEEe
Confidence 11233455566678888665
No 144
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=74.95 E-value=6.2 Score=26.70 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=33.4
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC----CCCCC-----CCCCCcC-EEEEcCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG----EFPDD-----DDFGSYD-GYVITGSC 68 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~----~~p~~-----~~~~~~d-~iii~G~~ 68 (126)
|.+|||+|- +++.--.+ -..+.++|++.|.++.-+-.+.. ++|.. +.+.++| ||++.|+.
T Consensus 5 m~~mkI~ig-sDhaG~~l-------K~~i~~~L~~~G~eV~D~G~~~~~~~~dYpd~a~~va~~V~~~d~GIliCGTG 74 (148)
T 4em8_A 5 MVVKRVFLS-SDHAGVEL-------RLFLSAYLRDLGCEVFDCGCDPKEHSVDYPDYVHDVVREVSDTSFGVLICGTG 74 (148)
T ss_dssp CSCSEEEEE-ECGGGHHH-------HHHHHHHHHHTTCEEEECCCCTTCSCCCGGGGTHHHHTTCBTTBEEEEEESSS
T ss_pred ceeeEEEEE-ECchhHHH-------HHHHHHHHHHCCCEEEEeCCCCCCCCCChHHHHHHHHHHHHHhCeEEEEccCc
Confidence 778888765 33322122 23477889898977654433211 24431 1122444 89998875
No 145
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=74.93 E-value=9.8 Score=26.72 Aligned_cols=86 Identities=13% Similarity=0.070 Sum_probs=47.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCC--CCCcCEEEEcCCCCCCCCCchHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDD--FGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~--~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
.+|+|+..+..++... ....-+.+.+++.|.++.++....+.-.. .+. -..+||||+.+......+..
T Consensus 16 ~~Igvi~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~--- 88 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFP----SIIRGIESYLSEQGYSMLLTSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQTPN--- 88 (298)
T ss_dssp CEEEEEESCSSSTTHH----HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTT---
T ss_pred ceEEEEeCCCCchHHH----HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHHCCCCEEEEecccccccCCc---
Confidence 5789988776554211 22334556677789988887643210000 000 15799999987643221111
Q ss_pred HHHHHHHHHHHhcCCcEEEEc
Q 033165 79 CKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGIC 99 (126)
.+.++.+.+.++|+.-+.
T Consensus 89 ---~~~~~~~~~~~iPvV~~~ 106 (298)
T 3tb6_A 89 ---IGYYLNLEKNGIPFAMIN 106 (298)
T ss_dssp ---HHHHHHHHHTTCCEEEES
T ss_pred ---HHHHHHHHhcCCCEEEEe
Confidence 123444555688887653
No 146
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=74.88 E-value=10 Score=26.69 Aligned_cols=38 Identities=3% Similarity=-0.027 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhhC-CCeEEEEEccC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAEE-GETWDVFHVAR 47 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~~-g~~~~~~~~~~ 47 (126)
||||+|+...+.. ++++..+.+ .+++. |.+++++++.+
T Consensus 1 MmkIliI~gS~r~-------~s~T~~la~~i~~~l~~~~g~~v~~~dl~~ 43 (242)
T 1sqs_A 1 MNKIFIYAGVRNH-------NSKTLEYTKRLSSIISSRNNVDISFRTPFN 43 (242)
T ss_dssp CCEEEEEECCCCT-------TCHHHHHHHHHHHHHHHHSCCEEEEECTTT
T ss_pred CCeEEEEECCCCC-------CChHHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 4699999887652 234444444 34444 88999988764
No 147
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=74.20 E-value=7.2 Score=27.02 Aligned_cols=87 Identities=14% Similarity=0.108 Sum_probs=47.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh---CCCeEEEEEccCCCCCCC----------------CCCCCcCEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE---EGETWDVFHVARGEFPDD----------------DDFGSYDGYV 63 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~~p~~----------------~~~~~~d~ii 63 (126)
++||+||.-.... +|++..+.+++.+ .+.+++++++.+ +|-. +.+...|++|
T Consensus 2 ~k~I~vi~GS~R~-------~S~~~~la~~~~~~~~~~~~~~~idl~d--LP~~~~d~~~~~p~~~~~l~~~i~~aD~~i 72 (190)
T 3u7r_A 2 VKTVAVMVGSLRK-------DSLNHKLMKVLQKLAEGRLEFHLLHIGD--LPHYNDDLWADAPESVLRLKDRIEHSDAVL 72 (190)
T ss_dssp CEEEEEEESCCST-------TCHHHHHHHHHHHHHTTTEEEEECCGGG--SCCCCGGGGGGCCHHHHHHHHHHHTSSEEE
T ss_pred CCEEEEEECCCCC-------CCHHHHHHHHHHHhccCCCEEEEEeccc--CCCCCCCcccCCCHHHHHHHHHHHhCCcEE
Confidence 4588888665432 4666666655543 467777776642 3310 1245799999
Q ss_pred EcCCCCCCCCCchHHHHHHHHHHHHHh----cCCcEEEEc
Q 033165 64 ITGSCNDAHGNDVWICKLIALLKQLDS----LRKKVLGIC 99 (126)
Q Consensus 64 i~G~~~~~~~~~~~~~~~~~~i~~~~~----~~~PvlGIC 99 (126)
+.--.++- .-..-+.+..+++-+... .+||++-++
T Consensus 73 i~tPeYn~-s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~ 111 (190)
T 3u7r_A 73 AITPEYNR-SYPGMIKNAIDWATRPYGQNSWKGKPAAVIG 111 (190)
T ss_dssp EECCCBTT-BCCHHHHHHHHHHHCSTTCCTTTTCEEEEEE
T ss_pred Eechhhcc-cCCHHHHHHHHHhcccccCCccCCCEEEEEE
Confidence 97332221 111345556666532111 479987765
No 148
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=74.00 E-value=6.8 Score=30.59 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=54.8
Q ss_pred eEEEEEcCCCchHHHHhhCC--HHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGG--YFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~--~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
||+|.+.-+..+. .+..|. -+.|+.+. .|.++++-.....++|..+++.+||.||=+||-+- . .+...
T Consensus 320 ~v~~~e~c~h~~~-~~dig~vk~p~~~~~~---~~~~~~~~~~~g~~~p~~~~~~~~~l~i~cg~cm~--~----~~~~~ 389 (423)
T 3qq5_A 320 TVVIMEGCTHRPL-TEDIGRVKIPRWLVNH---TGAQLNFKVIAGKDFPDLEEIENAKLIIHCGGCIL--N----RSAMM 389 (423)
T ss_dssp EEEEECCSCCCCS-SCCTTTTHHHHHHHHH---SCSCCEEEEECSSSCCCHHHHSSCSEEEECTTTCC--C----HHHHH
T ss_pred EEEEeccCCCCCc-cccceechhhHHHHHH---hCCCcEEEEecCCCCCCccCcccCcEEEECcchhc--C----HHHHH
Confidence 6777776665531 112222 34444443 34444443444456774226899999999999653 2 13455
Q ss_pred HHHHHHHhcCCcEEEEchHHHHHHHHhC
Q 033165 83 ALLKQLDSLRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G~Q~la~~~G 110 (126)
.-++.+.++++|+-- +|. +||...|
T Consensus 390 ~r~~~~~~~~~p~~n--yg~-~~a~~~g 414 (423)
T 3qq5_A 390 RRVRMAKRLGIPMTN--YGV-TISYLHG 414 (423)
T ss_dssp HHHHHHHHTTCCEEE--HHH-HHHHTTC
T ss_pred HHHHHHHHcCCCeec--HHH-HHHHHhC
Confidence 567778889999954 676 4565444
No 149
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=73.92 E-value=2.6 Score=25.78 Aligned_cols=33 Identities=15% Similarity=0.034 Sum_probs=21.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|+++||+|++.+.. +...+.+.|+..|.++..+
T Consensus 1 M~~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 33 (127)
T 3i42_A 1 MSLQQALIVEDYQA----------AAETFKELLEMLGFQADYV 33 (127)
T ss_dssp -CCEEEEEECSCHH----------HHHHHHHHHHHTTEEEEEE
T ss_pred CCcceEEEEcCCHH----------HHHHHHHHHHHcCCCEEEE
Confidence 88999999965443 2235777888888765543
No 150
>1wu2_A MOEA protein, molybdopterin biosynthesis MOEA protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.30A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1xi8_A
Probab=73.37 E-value=1.7 Score=33.94 Aligned_cols=67 Identities=10% Similarity=-0.024 Sum_probs=41.4
Q ss_pred CCeEEEEEcCCCch-H-----H--HHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-C----CCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSE-Y-----V--KKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-D----DFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~-~-----~--~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-~----~~~~~d~iii~G~~~ 69 (126)
++|++|+-++..-- . . -+-+++...++..++++.|.++..+.+..++.... + .++++|.||.+||.+
T Consensus 182 ~prv~IistGdEl~~~~g~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlvittGG~s 261 (396)
T 1wu2_A 182 KPKVGIIITGSELIEEPSEEGFKEGKIVETNSIMLQGLVEKFFGEPILYGVLPDDESIIKETLEKAKNECDIVLITGGSA 261 (396)
T ss_dssp CCEEEEEEECTTEESSCCHHHHHTTCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHTTHHHHHHHCSEEEECC----
T ss_pred CCEEEEEEcCcccccCCCCcccCCCcEecchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 57999999886531 1 1 12367888899999999999887665544431110 0 123689999999854
No 151
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=73.34 E-value=7.5 Score=28.11 Aligned_cols=43 Identities=14% Similarity=-0.058 Sum_probs=27.3
Q ss_pred CCCCeEEEEEcC------------CCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCA------------EDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~------------~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|++|||+++... ++.. .-. ..+...+.+.|.+.|.+++++...
T Consensus 1 M~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~---~~~~~~l~~~L~~~G~~v~v~~~~ 56 (342)
T 2iuy_A 1 MRPLKVALVNIPLRVPGSDAWISVPPQGYGGI---QWVVANLMDGLLELGHEVFLLGAP 56 (342)
T ss_dssp --CCEEEEECCCCBCTTSSSBCCSSCSSSCHH---HHHHHHHHHHHHHTTCEEEEESCT
T ss_pred CCccEEEEEeccccccCcccccccCcccCChH---HHHHHHHHHHHHHcCCeEEEEecC
Confidence 889999999876 1110 000 125566778888889999988754
No 152
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=73.30 E-value=11 Score=26.45 Aligned_cols=58 Identities=12% Similarity=0.197 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
.+|+++..+..++... .+..-+.+.+++.|.++.++....+ +.. +. -.++||||+.+.
T Consensus 3 ~~Ig~i~~~~~~~~~~----~~~~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiI~~~~ 67 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFV----VLAETAKQRAEQLGYEATIFDSQND--TAKESAHFDAIIAAGYDAIIFNPT 67 (290)
T ss_dssp CEEEEEESCSSSHHHH----HHHHHHHHHHHHTTCEEEEEECTTC--HHHHHHHHHHHHHTTCSEEEECCS
T ss_pred eEEEEEeCCCCChHHH----HHHHHHHHHHHHcCCEEEEeCCCCC--HHHHHHHHHHHHHcCCCEEEEecC
Confidence 4899998765543211 2333455667778988877654221 100 01 147999999865
No 153
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=72.82 E-value=5.8 Score=28.59 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=46.8
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCCCCCCCCCc
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~~~~~~~~~ 75 (126)
.+.+|+|+..+..++... .+..-+.+.+++.|.++.++....+ ... .+. -..+||||+.+.....
T Consensus 2 ~~~~Igvi~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~i~~~~~~~vdgiIi~~~~~~~---- 72 (330)
T 3uug_A 2 DKGSVGIAMPTKSSARWI----DDGNNIVKQLQEAGYKTDLQYADDD-IPNQLSQIENMVTKGVKVLVIASIDGTT---- 72 (330)
T ss_dssp CCCEEEEEECCSSSTHHH----HHHHHHHHHHHHTTCEEEEEECTTC-HHHHHHHHHHHHHHTCSEEEECCSSGGG----
T ss_pred CCcEEEEEeCCCcchHHH----HHHHHHHHHHHHcCCEEEEeeCCCC-HHHHHHHHHHHHHcCCCEEEEEcCCchh----
Confidence 357899998876654221 2334455677778998887763211 000 000 1479999998653111
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++.+.+.++|+.-+
T Consensus 73 -----~~~~~~~~~~~giPvV~~ 90 (330)
T 3uug_A 73 -----LSDVLKQAGEQGIKVIAY 90 (330)
T ss_dssp -----GHHHHHHHHHTTCEEEEE
T ss_pred -----HHHHHHHHHHCCCCEEEE
Confidence 122344555567887654
No 154
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=72.55 E-value=3.6 Score=28.28 Aligned_cols=54 Identities=11% Similarity=0.149 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh---CCCeEEEEEccCCCCCCC----------------CCCCCcCEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE---EGETWDVFHVARGEFPDD----------------DDFGSYDGYV 63 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~---~g~~~~~~~~~~~~~p~~----------------~~~~~~d~ii 63 (126)
|+||+++...+.. ++++..+.+.+.+ .+.+++++++.+ +|.. +.+..+|+||
T Consensus 2 M~kilii~gS~r~-------~s~t~~la~~~~~~~~~~~~v~~~dl~~--lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV 72 (192)
T 3fvw_A 2 SKRILFIVGSFSE-------GSFNRQLAKKAETIIGDRAQVSYLSYDR--VPFFNQDLETSVHPEVAHAREEVQEADAIW 72 (192)
T ss_dssp -CEEEEEESCCST-------TCHHHHHHHHHHHHHTTSSEEEECCCSS--CCCCCGGGTTSCCHHHHHHHHHHHHCSEEE
T ss_pred CCEEEEEEcCCCC-------CCHHHHHHHHHHHhcCCCCEEEEEeCcc--CCCCCcccccCCcHHHHHHHHHHHhCCEEE
Confidence 5799999887752 2455555544422 477888887753 3311 1345789988
Q ss_pred Ec
Q 033165 64 IT 65 (126)
Q Consensus 64 i~ 65 (126)
+.
T Consensus 73 ~~ 74 (192)
T 3fvw_A 73 IF 74 (192)
T ss_dssp EE
T ss_pred EE
Confidence 86
No 155
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=72.09 E-value=17 Score=27.92 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=24.9
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
+.+|.+|..||-.. +....+.+...++|++||=.|.
T Consensus 107 ~~~DlvI~lGGDGT----------~L~aa~~~~~~~~PvlGiN~G~ 142 (365)
T 3pfn_A 107 NQIDFIICLGGDGT----------LLYASSLFQGSVPPVMAFHLGS 142 (365)
T ss_dssp TTCSEEEEESSTTH----------HHHHHHHCSSSCCCEEEEESSS
T ss_pred cCCCEEEEEcChHH----------HHHHHHHhccCCCCEEEEcCCC
Confidence 67999999999331 3333444444579999998773
No 156
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=71.87 E-value=2.9 Score=29.84 Aligned_cols=60 Identities=13% Similarity=0.135 Sum_probs=36.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHH----HHHHHHhhCCCeEEEEEccCCC-CC-CCCCCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFG----VFVRMLAEEGETWDVFHVARGE-FP-DDDDFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~----~~~~~l~~~g~~~~~~~~~~~~-~p-~~~~~~~~d~iii~ 65 (126)
|+||+||...+..+. +-++++. .+.+.+++.|.+++++++..+. .. ..+.+..+|+||+.
T Consensus 25 M~kiLiI~gsp~~~~---s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~~ 90 (218)
T 3rpe_A 25 MSNVLIINAMKEFAH---SKGALNLTLTNVAADFLRESGHQVKITTVDQGYDIESEIENYLWADTIIYQ 90 (218)
T ss_dssp CCCEEEEECCCCBTT---BCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGCCCHHHHHHHHHHCSEEEEE
T ss_pred CcceEEEEeCCCccc---CCChHHHHHHHHHHHHHhhCCCEEEEEECCCccCHHHHHHHHHhCCEEEEE
Confidence 689999998875310 0122333 3445556679999999986421 10 01245689999986
No 157
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=71.18 E-value=5.5 Score=26.27 Aligned_cols=55 Identities=15% Similarity=0.244 Sum_probs=30.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
+|++|+.....- +.+. ....+.+.++.. .+++++++...+ .+++.+||.||+.-.
T Consensus 1 ~kilIvY~S~tG-nT~~----vA~~ia~~l~~~-~~v~~~~~~~~~---~~~l~~~d~ii~g~p 55 (169)
T 1czn_A 1 AKIGLFYGTQTG-VTQT----IAESIQQEFGGE-SIVDLNDIANAD---ASDLNAYDYLIIGCP 55 (169)
T ss_dssp CCEEEEECCSSS-HHHH----HHHHHHHHHTST-TTEEEEEGGGCC---GGGGGGCSEEEEECC
T ss_pred CeEEEEEECCCc-HHHH----HHHHHHHHhCcc-cceEEEEhhhCC---HhHHhhCCEEEEEec
Confidence 478888766542 2221 223333444332 457888775322 235778998888543
No 158
>1hqk_A 6,7-dimethyl-8-ribityllumazine synthase; analysi stability, vitamin biosynthesis, transferase; 1.60A {Aquifex aeolicus} SCOP: c.16.1.1 PDB: 1nqu_A* 1nqv_A* 1nqw_A* 1nqx_A*
Probab=70.82 E-value=5.4 Score=27.10 Aligned_cols=102 Identities=17% Similarity=0.151 Sum_probs=56.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC---eEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCC-CCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE---TWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCND-AHG 73 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~-~~~ 73 (126)
..||+|+..+....-...- ..-..+.|.+.|. +++++++. .-|+|.. ..-.+||++|-.|---. ...
T Consensus 12 ~~ri~IV~arfn~~I~~~L----l~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIalG~VIrG~T~ 87 (154)
T 1hqk_A 12 GLRFGIVASRFNHALVDRL----VEGAIDCIVRHGGREEDITLVRVPGSWEIPVAAGELARKEDIDAVIAIGVLIRGATP 87 (154)
T ss_dssp TCCEEEEEECTTHHHHHHH----HHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHTCTTCCEEEEEEEEECCSST
T ss_pred CCEEEEEEeeCcHHHHHHH----HHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCch
Confidence 3699999998876422221 1223455666664 56777653 2233321 12257999999876311 111
Q ss_pred CchHHHH--HHHHHHHHHhcCCcEE-EE--ch-HHHHHHHH
Q 033165 74 NDVWICK--LIALLKQLDSLRKKVL-GI--CF-GHQVRAIT 108 (126)
Q Consensus 74 ~~~~~~~--~~~~i~~~~~~~~Pvl-GI--C~-G~Q~la~~ 108 (126)
..+++.. ...+.+-.++.++||. || |- =.|.+.++
T Consensus 88 Hfd~Va~~vs~gl~~v~l~~~vPV~~GVLT~~~~eQA~~Ra 128 (154)
T 1hqk_A 88 HFDYIASEVSKGLANLSLELRKPITFGVITADTLEQAIERA 128 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCEEEEEEEESSHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHh
Confidence 2233332 3455666677899964 42 33 56777775
No 159
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=70.47 E-value=4 Score=25.21 Aligned_cols=33 Identities=6% Similarity=-0.069 Sum_probs=22.0
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|+++||+|++.+.. +...+.+.|+..|.++..+
T Consensus 1 m~~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 33 (140)
T 2qr3_A 1 MSLGTIIIVDDNKG----------VLTAVQLLLKNHFSKVITL 33 (140)
T ss_dssp -CCCEEEEECSCHH----------HHHHHHHHHTTTSSEEEEE
T ss_pred CCCceEEEEeCCHH----------HHHHHHHHHHhCCcEEEEe
Confidence 88999999966543 2234777887778766543
No 160
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=70.19 E-value=6.9 Score=24.81 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=26.6
Q ss_pred HHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 26 FGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 26 ~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
...+.+.+++.|.+++++++.+.+ .+++.++|.||+.-+
T Consensus 16 A~~ia~~l~~~g~~v~~~~~~~~~---~~~l~~~d~iiig~p 54 (138)
T 5nul_A 16 AELIAKGIIESGKDVNTINVSDVN---IDELLNEDILILGCS 54 (138)
T ss_dssp HHHHHHHHHHTTCCCEEEEGGGCC---HHHHTTCSEEEEEEC
T ss_pred HHHHHHHHHHCCCeEEEEEhhhCC---HHHHhhCCEEEEEcC
Confidence 345666677778899998876432 125678998888644
No 161
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=70.17 E-value=9.2 Score=23.91 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=25.6
Q ss_pred HHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 26 FGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 26 ~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
...+.+.+++.|.+++++++.+.+ .+++.++|.||+...
T Consensus 17 a~~i~~~l~~~g~~v~~~~~~~~~---~~~l~~~d~vi~g~p 55 (137)
T 2fz5_A 17 ANEIEAAVKAAGADVESVRFEDTN---VDDVASKDVILLGCP 55 (137)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSCC---HHHHHTCSEEEEECC
T ss_pred HHHHHHHHHhCCCeEEEEEcccCC---HHHHhcCCEEEEEcc
Confidence 344556666678899988865322 124678999888644
No 162
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=69.95 E-value=4.5 Score=25.20 Aligned_cols=84 Identities=11% Similarity=0.006 Sum_probs=40.5
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-CCCCcCEEEEcCCCCCCCCCchHHH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-DFGSYDGYVITGSCNDAHGNDVWIC 79 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-~~~~~d~iii~G~~~~~~~~~~~~~ 79 (126)
|+++||+|++.+.. +...+.+.|+..|.++..+.-....+.... .-..+|.|++--.- ...+. .
T Consensus 1 M~~~~ilivdd~~~----------~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l-~~~~g----~ 65 (143)
T 3jte_A 1 MSLAKILVIDDEST----------ILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKM-PKLSG----M 65 (143)
T ss_dssp --CCEEEEECSCHH----------HHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCC-SSSCH----H
T ss_pred CCCCEEEEEcCCHH----------HHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCC-CCCcH----H
Confidence 88999999965443 223477788888876554331110000000 02468877774321 11111 1
Q ss_pred HHHHHHHHHHhcCCcEEEEch
Q 033165 80 KLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC~ 100 (126)
.+.+.+++. ....|++-+.-
T Consensus 66 ~~~~~l~~~-~~~~~ii~ls~ 85 (143)
T 3jte_A 66 DILREIKKI-TPHMAVIILTG 85 (143)
T ss_dssp HHHHHHHHH-CTTCEEEEEEC
T ss_pred HHHHHHHHh-CCCCeEEEEEC
Confidence 233334432 24678877663
No 163
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=69.54 E-value=11 Score=26.54 Aligned_cols=45 Identities=9% Similarity=0.042 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHH----hhC--CC-eEEEEEccCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRML----AEE--GE-TWDVFHVARGEFP 51 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l----~~~--g~-~~~~~~~~~~~~p 51 (126)
||||++|...+... ..++++..+.+.+ ++. +. +++++++.+.++|
T Consensus 4 MmkIL~I~gSpr~~----~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp 55 (223)
T 3u7i_A 4 MNKTLIINAHPKVD----DTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVP 55 (223)
T ss_dssp CCEEEEEECCTTTT----CTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCC
T ss_pred cCEEEEEEeCCCCC----CCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCC
Confidence 68999999887510 0135555555433 333 57 8999998765444
No 164
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=69.41 E-value=4.7 Score=27.19 Aligned_cols=37 Identities=5% Similarity=0.092 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhhC------CCeEEEEEccC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAEE------GETWDVFHVAR 47 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~~------g~~~~~~~~~~ 47 (126)
|||+|+...+... +++..+.+ .+++. |.+++++++.+
T Consensus 1 Mkilii~gS~r~~-------~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~ 47 (191)
T 1t0i_A 1 MKVGIIMGSVRAK-------RVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQ 47 (191)
T ss_dssp CEEEEEECCCCSS-------CSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHH
T ss_pred CeEEEEeCCCCCC-------CchHHHHHHHHHHHHHhhccCCCCceEEEEehhh
Confidence 4899998877531 34444443 44443 68888888764
No 165
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=69.18 E-value=24 Score=23.93 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=48.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC---eEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCC-CCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE---TWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCND-AHG 73 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~-~~~ 73 (126)
..||+|+..+....-...- ..-..+.|.+.|. +++++++. .-|+|.. ..-.+||+||-.|-.-. ...
T Consensus 11 ~~ri~IV~arfn~~I~~~L----l~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~ 86 (157)
T 2obx_A 11 TVRIAVVRARWHADIVDQC----VSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIY 86 (157)
T ss_dssp CEEEEEEEECTTHHHHHHH----HHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECCCCSSB
T ss_pred CCEEEEEEeeCcHHHHHHH----HHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCc
Confidence 4699999998876422221 1122344445553 46777653 2233321 01157999999986421 111
Q ss_pred CchHHHH--HHHHHHHHHhcCCcEE
Q 033165 74 NDVWICK--LIALLKQLDSLRKKVL 96 (126)
Q Consensus 74 ~~~~~~~--~~~~i~~~~~~~~Pvl 96 (126)
..+++.. ...+.+-.++.++||.
T Consensus 87 Hfd~Va~~vs~Gl~~v~L~~~vPV~ 111 (157)
T 2obx_A 87 RHEFVASAVIDGMMNVQLSTGVPVL 111 (157)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCEE
Confidence 2233332 3455666677899964
No 166
>3u80_A 3-dehydroquinate dehydratase, type II; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 1.60A {Bifidobacterium longum} SCOP: c.23.13.0
Probab=69.06 E-value=24 Score=23.89 Aligned_cols=92 Identities=10% Similarity=-0.021 Sum_probs=40.3
Q ss_pred CCCCeEEEEEcCCCchHHH---HhhCC--H---HHHHHHHHhhCCCeEEEEEccC-CCCCC--CCCCCCcCEEEEcCCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVK---KKYGG--Y---FGVFVRMLAEEGETWDVFHVAR-GEFPD--DDDFGSYDGYVITGSCN 69 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~---~~~~~--~---~~~~~~~l~~~g~~~~~~~~~~-~~~p~--~~~~~~~d~iii~G~~~ 69 (126)
|.|+||+||.--.-+---. +-||+ + ...+.+...+.|.+++.+.-.. +++-+ .+..+++|+|||=.|..
T Consensus 2 ~~m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~v~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA~ 81 (151)
T 3u80_A 2 NAMTKVIVVNGPNLGRLGVRQPDVYGRQDLDTLRKLCAEWGKDLGLEVEVRQTDDEAEMVRWMHQAADEKTPVVMNPAAF 81 (151)
T ss_dssp --CEEEEEEECSCC------------CHHHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHHHHTCCEEEECTTC
T ss_pred CCCCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchh
Confidence 5677888886433221111 12443 2 2344445556788888776321 11100 00114589999965544
Q ss_pred CCCCCchHHHHHHHHHHHHHhcCCcEEE
Q 033165 70 DAHGNDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
+=+. -.+++.++.+..-++|+.=
T Consensus 82 THtS-----vAlrDAl~~l~~~~~P~VE 104 (151)
T 3u80_A 82 THYS-----YALADAAHMVIDENLPLME 104 (151)
T ss_dssp CSCC-----HHHHHHHHHHHHTTCCEEE
T ss_pred hhhh-----HHHHHHHHHHhhcCCCEEE
Confidence 3222 2244443332223566653
No 167
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=69.05 E-value=17 Score=26.60 Aligned_cols=96 Identities=13% Similarity=0.044 Sum_probs=56.5
Q ss_pred CCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCC--CCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165 3 GKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPD--DDDFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 3 ~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~--~~~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
|+|++|+.+...-. ...+ ....+.++|++.+.+++++...... ... .+-.+++|.||+.||-
T Consensus 8 m~~~~vi~Np~sG~~~~~~----~~~~i~~~l~~~~~~~~~~~t~~~~~a~~~~~~~~~~~d~vv~~GGD---------- 73 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHT----NLTKIVPPLAAAFPDLHILHTKEQGDATKYCQEFASKVDLIIVFGGD---------- 73 (304)
T ss_dssp CSSEEEEECTTCSSSCHHH----HHHHHHHHHHHHCSEEEEEECCSTTHHHHHHHHHTTTCSEEEEEECH----------
T ss_pred CCEEEEEECcccCCCchHH----HHHHHHHHHHHcCCeEEEEEccCcchHHHHHHHhhcCCCEEEEEccc----------
Confidence 57888887754321 1111 2234677888889888877532110 000 0012479999999992
Q ss_pred HHHHHHHHHHHh--cCCcEEEEchHHH-HHHHHhCCc
Q 033165 79 CKLIALLKQLDS--LRKKVLGICFGHQ-VRAITVFSS 112 (126)
Q Consensus 79 ~~~~~~i~~~~~--~~~PvlGIC~G~Q-~la~~~Gg~ 112 (126)
..+.+.++.+.. .+.|+..|=.|-. -+|+.+|-.
T Consensus 74 GTl~~v~~~l~~~~~~~~l~iiP~Gt~N~~ar~lg~~ 110 (304)
T 3s40_A 74 GTVFECTNGLAPLEIRPTLAIIPGGTCNDFSRTLGVP 110 (304)
T ss_dssp HHHHHHHHHHTTCSSCCEEEEEECSSCCHHHHHTTCC
T ss_pred hHHHHHHHHHhhCCCCCcEEEecCCcHHHHHHHcCCC
Confidence 234455666555 5677777766665 577777653
No 168
>1jg7_A BGT, DNA beta-glucosyltransferase; glycosyltransferase; HET: DNA UDP; 1.65A {Enterobacteria phage T4} SCOP: c.87.1.1 PDB: 1bgu_A* 1bgt_A* 1ixy_A* 1c3j_A* 1jej_A* 1jg6_A* 1j39_A* 1jiu_A* 1jiv_A* 1jix_A* 1m5r_A* 1nvk_A* 1qkj_A* 1sxp_A* 1sxq_A* 2bgt_A 2bgu_A* 1nzd_A* 1nzf_A*
Probab=68.80 E-value=7.4 Score=28.64 Aligned_cols=70 Identities=19% Similarity=0.300 Sum_probs=43.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC---CCCCCCCcCEEEEcCCCCCCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP---DDDDFGSYDGYVITGSCNDAHG 73 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p---~~~~~~~~d~iii~G~~~~~~~ 73 (126)
|||+||..+.....+.-...+-+-.+...+.+.|.+++++.....-+. ++.+...||.+++..+..+.+.
T Consensus 1 mkiai~n~gnni~~fkt~p~setiyl~~~~~~mgl~vd~is~k~~iy~~~fd~vd~n~ydr~~vvn~s~nf~g 73 (351)
T 1jg7_A 1 MKIAIINMGNNVINFKTVPSSETIYLFKVISEMGLNVDIISLKNGVYTKSFDEVDVNDYDRLIVVNSSINFFG 73 (351)
T ss_dssp CCEEEEESSSCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEESSCCSSEEEGGGSCGGGCSEEEEECCCCCCCT
T ss_pred CceEEEecCCccccceecCccceeeHHHHHHHcCCCeeEEEeccceeeeecccCCccccceEEEEeceeeccC
Confidence 589999887654321111112223355778889999999986533110 1225678999999877666554
No 169
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=68.58 E-value=17 Score=25.32 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=46.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CC--CCCCcCEEEEcCCCCCCCCCchH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DD--DFGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~--~~~~~d~iii~G~~~~~~~~~~~ 77 (126)
+.+|+|+..+..++.. ..+..-+.+.+++.|.++.++....+.-.. .+ .-..+||||+.+... .
T Consensus 7 s~~Igvi~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~-----~-- 75 (276)
T 3jy6_A 7 SKLIAVIVANIDDYFS----TELFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN-----P-- 75 (276)
T ss_dssp CCEEEEEESCTTSHHH----HHHHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC-----H--
T ss_pred CcEEEEEeCCCCchHH----HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc-----H--
Confidence 4689999876655422 123344556677789888877643210000 00 115799999987632 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEEc
Q 033165 78 ICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGIC 99 (126)
+.++.+.+.++|+.-+.
T Consensus 76 -----~~~~~l~~~~iPvV~i~ 92 (276)
T 3jy6_A 76 -----QTVQEILHQQMPVVSVD 92 (276)
T ss_dssp -----HHHHHHHTTSSCEEEES
T ss_pred -----HHHHHHHHCCCCEEEEe
Confidence 23344455688887653
No 170
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=67.75 E-value=5.1 Score=27.23 Aligned_cols=102 Identities=19% Similarity=0.198 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC---eEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCC-CCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE---TWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCND-AHG 73 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~-~~~ 73 (126)
..||+|+..+....-... -..-..+.|.+.|. +++++++. .-|+|.. ..-.+||+||-.|---. ...
T Consensus 12 ~~ri~IV~arfn~~I~~~----Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~ 87 (154)
T 1rvv_A 12 GLKIGIVVGRFNDFITSK----LLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATT 87 (154)
T ss_dssp TCCEEEEEESTTHHHHHH----HHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSSS
T ss_pred CCEEEEEEEeCcHHHHHH----HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCch
Confidence 369999999887642221 11223455666664 56777653 2233321 01257999999876311 111
Q ss_pred CchHHHH--HHHHHHHHHhcCCcEE-EE--ch-HHHHHHHH
Q 033165 74 NDVWICK--LIALLKQLDSLRKKVL-GI--CF-GHQVRAIT 108 (126)
Q Consensus 74 ~~~~~~~--~~~~i~~~~~~~~Pvl-GI--C~-G~Q~la~~ 108 (126)
..+++.. ...+.+-.++.++||. || |- =.|.+.++
T Consensus 88 Hfd~V~~~vs~Gl~~v~l~~~vPV~~GVLT~~~~eQA~~Ra 128 (154)
T 1rvv_A 88 HYDYVCNEAAKGIAQAANTTGVPVIFGIVTTENIEQAIERA 128 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSHHHHHHTE
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCEEEEecCCCCHHHHHHHh
Confidence 2233332 3455666677899964 42 33 56776665
No 171
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=66.87 E-value=31 Score=24.34 Aligned_cols=79 Identities=9% Similarity=0.037 Sum_probs=43.2
Q ss_pred CCeEEEEEcC----CCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCC------CCCcCEEEEcCCCCCCC
Q 033165 3 GKKFAVLLCA----EDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDD------FGSYDGYVITGSCNDAH 72 (126)
Q Consensus 3 ~~ki~Il~~~----~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~------~~~~d~iii~G~~~~~~ 72 (126)
..+|+|+... ..++. |..+..-+.+.+++.|.++.++.... . ..... -..+||||+.+...+
T Consensus 6 s~~Igvi~~~~~~~~~~~~----~~~~~~gi~~~a~~~g~~~~~~~~~~-~-~~~~~~~~~l~~~~vdGiIi~~~~~~-- 77 (294)
T 3qk7_A 6 TDAIALAYPSRPRVLNNST----FLEMISWIGIELGKRGLDLLLIPDEP-G-EKYQSLIHLVETRRVDALIVAHTQPE-- 77 (294)
T ss_dssp CCEEEEEEESCSGGGSCHH----HHHHHHHHHHHHHHTTCEEEEEEECT-T-CCCHHHHHHHHHTCCSEEEECSCCSS--
T ss_pred cceEEEEecCCCccccChh----HHHHHHHHHHHHHHCCCEEEEEeCCC-h-hhHHHHHHHHHcCCCCEEEEeCCCCC--
Confidence 3578888763 22221 12233345566677899888877532 1 11000 147999999876431
Q ss_pred CCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 73 GNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 73 ~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
+ + .++.+.+.++|+.-+
T Consensus 78 ~--~-------~~~~l~~~~iPvV~~ 94 (294)
T 3qk7_A 78 D--F-------RLQYLQKQNFPFLAL 94 (294)
T ss_dssp C--H-------HHHHHHHTTCCEEEE
T ss_pred h--H-------HHHHHHhCCCCEEEE
Confidence 1 1 233344557787654
No 172
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=66.79 E-value=20 Score=25.14 Aligned_cols=83 Identities=13% Similarity=0.009 Sum_probs=43.6
Q ss_pred CCeEEEEEcCC-CchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCCC-CCCC-----C--CCCCcCEEEEcCCCCCCC
Q 033165 3 GKKFAVLLCAE-DSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARGE-FPDD-----D--DFGSYDGYVITGSCNDAH 72 (126)
Q Consensus 3 ~~ki~Il~~~~-~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~-~p~~-----~--~~~~~d~iii~G~~~~~~ 72 (126)
..+|+|+..+. .++.. .....-+.+.+++. |..+.+....... -+.. + .-.++||||+.+.....
T Consensus 8 ~~~Igvi~~~~~~~~~~----~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~- 82 (304)
T 3gbv_A 8 KYTFACLLPKHLEGEYW----TDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQY- 82 (304)
T ss_dssp CEEEEEEEECCCTTSHH----HHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGG-
T ss_pred cceEEEEecCCCCchHH----HHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHH-
Confidence 36788888776 44321 12233455666667 7887776542111 0100 0 12579999998763211
Q ss_pred CCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 73 GNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 73 ~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++.+.+.++|++-+
T Consensus 83 --------~~~~~~~~~~~~iPvV~~ 100 (304)
T 3gbv_A 83 --------TKGFTDALNELGIPYIYI 100 (304)
T ss_dssp --------THHHHHHHHHHTCCEEEE
T ss_pred --------HHHHHHHHHHCCCeEEEE
Confidence 112344444557887654
No 173
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=66.53 E-value=12 Score=26.85 Aligned_cols=82 Identities=12% Similarity=0.057 Sum_probs=42.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCCCCCCCCCch
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~~~~~~~~~~ 76 (126)
|.+|+++.....+ . |..+..-+.+.+++.|.++.++.....+... .+. -.++||||+.+.... .
T Consensus 1 ~~~Ig~i~~~~~~-~----~~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~---~-- 70 (313)
T 2h3h_A 1 MLTIGVIGKSVHP-Y----WSQVEQGVKAAGKALGVDTKFFVPQKEDINAQLQMLESFIAEGVNGIAIAPSDPT---A-- 70 (313)
T ss_dssp CCEEEEECSCSSH-H----HHHHHHHHHHHHHHHTCEEEEECCSSSCHHHHHHHHHHHHHTTCSEEEECCSSTT---T--
T ss_pred CeEEEEEeCCCcH-H----HHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChH---H--
Confidence 4688888654432 1 1123334455666778887765432111000 000 157999999765321 1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEE
Q 033165 77 WICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGI 98 (126)
..+.++.+.+.++|++.+
T Consensus 71 ----~~~~~~~~~~~~iPvV~~ 88 (313)
T 2h3h_A 71 ----VIPTIKKALEMGIPVVTL 88 (313)
T ss_dssp ----THHHHHHHHHTTCCEEEE
T ss_pred ----HHHHHHHHHHCCCeEEEe
Confidence 112234444568888765
No 174
>2bmv_A Flavodoxin; electron transport, flavoprotein, FMN, transport protein; 2.11A {Helicobacter pylori} PDB: 2w5u_A* 1fue_A*
Probab=66.23 E-value=2.4 Score=28.09 Aligned_cols=52 Identities=13% Similarity=0.326 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
|+|++|+.....- + +..+.+.+.+ .|. ++++++...+ ..++.+||.||+..+
T Consensus 1 M~k~~I~Y~S~tG-n--------T~~~A~~ia~~lg~-~~~~~~~~~~---~~~l~~~d~ii~g~p 53 (164)
T 2bmv_A 1 MGKIGIFFGTDSG-N--------AEAIAEKISKAIGN-AEVVDVAKAS---KEQFNSFTKVILVAP 53 (164)
T ss_dssp -CCEEEEECCSSS-H--------HHHHHHHHHHHHCS-EEEEEGGGCC---HHHHTTCSEEEEEEE
T ss_pred CCeEEEEEECCCc-h--------HHHHHHHHHHHcCC-cEEEecccCC---HhHHhhCCEEEEEEC
Confidence 4688888765542 2 3334444432 355 7777765321 124678998888533
No 175
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=66.05 E-value=29 Score=23.83 Aligned_cols=82 Identities=12% Similarity=0.062 Sum_probs=43.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCC--CC-cCEEEEcCCCCCCCCCc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDF--GS-YDGYVITGSCNDAHGND 75 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~--~~-~d~iii~G~~~~~~~~~ 75 (126)
.||+++..+..++... .+..-+.+.+++.|.++.++....+.-+.. +.+ .. +||||+.+..... .
T Consensus 1 ~~Ig~i~~~~~~~~~~----~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~--~- 73 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWR----QVYLGAQKAADEAGVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED--L- 73 (276)
T ss_dssp CEEEEECSCSSSTHHH----HHHHHHHHHHHHHTCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT--T-
T ss_pred CeEEEEeCCCCChHHH----HHHHHHHHHHHHcCCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH--H-
Confidence 4788887766554221 223345566667788887765321110100 000 25 9999998753211 1
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
.+.++.+.+.++|++-+
T Consensus 74 ------~~~~~~~~~~~ipvV~~ 90 (276)
T 3ksm_A 74 ------TPSVAQYRARNIPVLVV 90 (276)
T ss_dssp ------HHHHHHHHHTTCCEEEE
T ss_pred ------HHHHHHHHHCCCcEEEE
Confidence 12344455568888765
No 176
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=65.82 E-value=1.5 Score=34.30 Aligned_cols=67 Identities=19% Similarity=0.097 Sum_probs=43.9
Q ss_pred CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~ 69 (126)
++|++||-++..--. .-+-+++...++..++++.|.++..+.+..++.... +.++++|.||.+||.+
T Consensus 180 ~prv~IistGdEl~~~g~~~~~G~i~DsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s 257 (402)
T 1uz5_A 180 KPKVAVISTGNEIVPPGNELKPGQIYDINGRALCDAINELGGEGIFMGVARDDKESLKALIEKAVNVGDVVVISGGAS 257 (402)
T ss_dssp CCEEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHHHTSEEEEEEEECSSHHHHHHHHHHHHHHCSEEEEECCC-
T ss_pred CCEEEEEEcCccccCCCCCCCCCcEEcchHHHHHHHHHhCCCeEEEEEEeCCCHHHHHHHHHHHhhCCCEEEEcCCCC
Confidence 579999998765410 112357788899999999999887665544431110 0124689999999964
No 177
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=65.44 E-value=2.1 Score=33.56 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCCC
Q 033165 3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCND 70 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~~ 70 (126)
++|++|+-++..--. .-+-+++...++..++++.|.++..+.+..++.... +.++++|.||.+||.+-
T Consensus 177 ~~rv~iistGdEl~~~g~~~~~G~i~dsn~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~al~~a~~~~DlvittGG~s~ 255 (411)
T 1g8l_A 177 KVRVALFSTGDELQLPGQPLGDGQIYDTNRLAVHLMLEQLGCEVINLGIIRDDPHALRAAFIEADSQADVVISSGGVSV 255 (411)
T ss_dssp CCEEEEEEECTTEECTTSCCCSSCEECCHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHHHCSEEEECSSSCS
T ss_pred CCEEEEEEcCccccCCCCCCCCCcEEcCchHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHhhcCCEEEECCCCCC
Confidence 579999998774320 012356788899999999999887665543331110 01246899999999643
No 178
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=65.29 E-value=12 Score=24.76 Aligned_cols=60 Identities=18% Similarity=0.312 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCC-CCCC-CCCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARG-EFPD-DDDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~-~~p~-~~~~~~~d~iii~G~ 67 (126)
..||+|+.....- +++. ....+.+.+++.|.+++++++... +... ..++.++|+||+.-.
T Consensus 4 ~~kv~IvY~S~~G-nT~~----iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gsp 65 (159)
T 3fni_A 4 ETSIGVFYVSEYG-YSDR----LAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMS 65 (159)
T ss_dssp CCEEEEEECTTST-THHH----HHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECC
T ss_pred CCEEEEEEECCCh-HHHH----HHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcC
Confidence 3588888776542 2221 233455666677889988887532 2100 012346898877543
No 179
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=65.22 E-value=4.3 Score=26.81 Aligned_cols=53 Identities=13% Similarity=0.230 Sum_probs=29.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
||++|+.....- +.+. ....+.+.++. .+++++++...+ .+++.+||.||+.-
T Consensus 2 mkilIiY~S~tG-nT~~----vA~~ia~~l~~--~~v~~~~~~~~~---~~~l~~~d~ii~g~ 54 (169)
T 1obo_A 2 KKIGLFYGTQTG-KTES----VAEIIRDEFGN--DVVTLHDVSQAE---VTDLNDYQYLIIGC 54 (169)
T ss_dssp CSEEEEECCSSS-HHHH----HHHHHHHHHCT--TTEEEEETTTCC---GGGGGGCSEEEEEE
T ss_pred CeEEEEEECCCc-hHHH----HHHHHHHHhCc--CCcEEEEcccCC---HHHHhhCCEEEEEE
Confidence 689998776642 2211 22233333332 267777764321 23577899988853
No 180
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=65.17 E-value=12 Score=27.01 Aligned_cols=83 Identities=12% Similarity=0.028 Sum_probs=42.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCCCCCCCCCch
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~~~~~~~~~~ 76 (126)
+.+|+++......+... ....-+.+.+++.|.++.+......+... .+. -..+|+||+.+.....
T Consensus 3 ~~~Igvi~~~~~~~~~~----~~~~g~~~~~~~~g~~~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~----- 73 (316)
T 1tjy_A 3 AERIAFIPKLVGVGFFT----SGGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDG----- 73 (316)
T ss_dssp CCEEEEECSSSSSHHHH----HHHHHHHHHHHHHTCEEEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSST-----
T ss_pred CCEEEEEeCCCCChHHH----HHHHHHHHHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH-----
Confidence 56899997665544221 12334555666778777654222111000 001 1579999997642211
Q ss_pred HHHHHHHHHHHHHhcCCcEEEE
Q 033165 77 WICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGI 98 (126)
+...++.+.+.++|++.+
T Consensus 74 ----~~~~~~~a~~~gipvV~~ 91 (316)
T 1tjy_A 74 ----LCPALKRAMQRGVKILTW 91 (316)
T ss_dssp ----THHHHHHHHHTTCEEEEE
T ss_pred ----HHHHHHHHHHCcCEEEEe
Confidence 112344445567787654
No 181
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=64.96 E-value=29 Score=23.47 Aligned_cols=102 Identities=17% Similarity=0.121 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC-C---eEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCC-CC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG-E---TWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCND-AH 72 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~---~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~-~~ 72 (126)
..||+|+..+....-...- ..-..+.|.+.| . +++++++. .-|+|.. ..-.+||+||..|---. ..
T Consensus 12 ~~ri~IV~arfn~~I~~~L----l~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T 87 (156)
T 3nq4_A 12 DARVAITIARFNQFINDSL----LDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGT 87 (156)
T ss_dssp TCCEEEEEESTTHHHHHHH----HHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEEECCSS
T ss_pred CCEEEEEEeeCcHHHHHHH----HHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCc
Confidence 4799999998876532221 122345566677 3 67887764 2233321 01157999999885311 11
Q ss_pred CCchHHHH--HHHHHHHHHhcCCcE-EEEc---hHHHHHHHH
Q 033165 73 GNDVWICK--LIALLKQLDSLRKKV-LGIC---FGHQVRAIT 108 (126)
Q Consensus 73 ~~~~~~~~--~~~~i~~~~~~~~Pv-lGIC---~G~Q~la~~ 108 (126)
...+++.. ...+.+-.++.++|| +||= -=.|.+.++
T Consensus 88 ~Hfd~Va~~v~~Gl~~v~L~~~vPV~~GVLT~~~~eQA~~Ra 129 (156)
T 3nq4_A 88 AHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERA 129 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHHHCCCEEEEEEEESCHHHHHHHB
T ss_pred hHHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCHHHHHHHh
Confidence 12233332 334556667789995 3442 456777774
No 182
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=64.39 E-value=34 Score=23.96 Aligned_cols=62 Identities=5% Similarity=0.025 Sum_probs=31.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE-EccCCCCCCCC---C--CCCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF-HVARGEFPDDD---D--FGSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~-~~~~~~~p~~~---~--~~~~d~iii~G~~ 68 (126)
..+|+++..+..++.. .....-+.+.+++.|.++.++ ....+.-...+ . -..+||||+.+..
T Consensus 8 ~~~Ig~i~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~ 75 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFA----QQILDGIQEEAHKNGYNLIIVYSGSADPEEQKHALLTAIERPVMGILLLSIA 75 (290)
T ss_dssp CCEEEEECCCCSSSHH----HHHHHHHHHHHHTTTCEEEEEC----------CHHHHHHSSCCSEEEEESCC
T ss_pred CCEEEEEeCCCCChHH----HHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 3578888765443321 122333456667788888776 43211100000 0 1579999998753
No 183
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=64.39 E-value=17 Score=25.53 Aligned_cols=59 Identities=12% Similarity=0.032 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
+.+|+|+..+..++... ....-+.+.+++.|.++.+.....+ +.. +. -...||||+.+.
T Consensus 1 ~~~Igvi~~~~~~~f~~----~~~~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~i~~l~~~~vdgiIi~~~ 66 (283)
T 2ioy_A 1 MKTIGLVISTLNNPFFV----TLKNGAEEKAKELGYKIIVEDSQND--SSKELSNVEDLIQQKVDVLLINPV 66 (283)
T ss_dssp -CEEEEEESCSSSHHHH----HHHHHHHHHHHHHTCEEEEEECTTC--HHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CeEEEEEecCCCCHHHH----HHHHHHHHHHHhcCcEEEEecCCCC--HHHHHHHHHHHHHcCCCEEEEeCC
Confidence 35788887665544211 1233344566677888877653211 110 00 147999999754
No 184
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=63.49 E-value=1.7 Score=31.48 Aligned_cols=79 Identities=11% Similarity=0.079 Sum_probs=39.9
Q ss_pred HHHHHHhhCCCeEEEEEccCCC-CCCC-------CCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHH-h-cCCcEEE
Q 033165 28 VFVRMLAEEGETWDVFHVARGE-FPDD-------DDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLD-S-LRKKVLG 97 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~-~p~~-------~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~-~-~~~PvlG 97 (126)
.+.+.|++.|.++..+.+.+-. .+.. ..+.+||.||++-... ++.+.+.++... + .++++..
T Consensus 28 ~l~~~L~~~G~~~~~~P~i~i~~~~~~~~l~~~l~~l~~~d~vifTS~na--------V~~~~~~l~~~~~~~~~~~i~a 99 (269)
T 3re1_A 28 ALARVLADAGIFSSSLPLLETEPLPLTPAQRSIIFELLNYSAVIVVSKPA--------ARLAIELIDEVWPQPPMQPWFS 99 (269)
T ss_dssp HHHHHHHTTTCEEEECCCCEEEECCCHHHHHHHHHTGGGSSEEEECSHHH--------HHHHHHHHHHHCSSCCCSCEEE
T ss_pred HHHHHHHHCCCCEEEcCCEEEecCCCcHHHHHHHHhccCCCEEEEECHHH--------HHHHHHHHHHhCCCcccCEEEE
Confidence 4778888999877655433211 1110 1357899999983310 122222232211 0 1367766
Q ss_pred EchHHHHHHHHhCCccc
Q 033165 98 ICFGHQVRAITVFSSHI 114 (126)
Q Consensus 98 IC~G~Q~la~~~Gg~v~ 114 (126)
|.-+---..+.+|-++.
T Consensus 100 VG~~Ta~aL~~~G~~~~ 116 (269)
T 3re1_A 100 VGSATGQILLDYGLDAS 116 (269)
T ss_dssp SSHHHHHHHHHTTCCEE
T ss_pred ECHHHHHHHHHcCCCcc
Confidence 66553333344576554
No 185
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=63.34 E-value=17 Score=25.47 Aligned_cols=62 Identities=8% Similarity=0.044 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCC--CCCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDD--FGSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~--~~~~d~iii~G~~ 68 (126)
..+|+|+..+..++... .+..-+.+.+++.|.++.++....+.-.. .+. -..+||||+.+..
T Consensus 8 ~~~Igvv~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~ 74 (291)
T 3egc_A 8 SNVVGLIVSDIENVFFA----EVASGVESEARHKGYSVLLANTAEDIVREREAVGQFFERRVDGLILAPSE 74 (291)
T ss_dssp CCEEEEEESCTTSHHHH----HHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCS
T ss_pred CcEEEEEECCCcchHHH----HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 46899998776554221 23344556677789988887643210000 000 1579999998764
No 186
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=63.06 E-value=19 Score=25.43 Aligned_cols=83 Identities=6% Similarity=-0.058 Sum_probs=44.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC-eEEEEEccCCCCCC----CCC--CCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE-TWDVFHVARGEFPD----DDD--FGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~~~~~~~~~ 75 (126)
+.+|+|+..+..++... ....-+.+.+++.|. ++.++....+ ... .+. -..+||||+.+...+ .
T Consensus 2 s~~Igvi~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~vdgiii~~~~~~----~ 72 (309)
T 2fvy_A 2 DTRIGVTIYKYDDNFMS----VVRKAIEQDAKAAPDVQLLMNDSQND-QSKQNDQIDVLLAKGVKALAINLVDPA----A 72 (309)
T ss_dssp CEEEEEEESCTTSHHHH----HHHHHHHHHHHTCTTEEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECCSSGG----G
T ss_pred CcEEEEEeccCCcHHHH----HHHHHHHHHHHhcCCeEEEEecCCCC-HHHHHHHHHHHHHcCCCEEEEeCCCcc----h
Confidence 45788987665543211 233345566677787 7776653211 000 001 157999999764211 0
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 76 VWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
..+.++.+.+.++|++-+.
T Consensus 73 -----~~~~~~~~~~~~iPvV~~~ 91 (309)
T 2fvy_A 73 -----AGTVIEKARGQNVPVVFFN 91 (309)
T ss_dssp -----HHHHHHHHHTTTCCEEEES
T ss_pred -----hHHHHHHHHHCCCcEEEec
Confidence 1223444555688987653
No 187
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=62.87 E-value=11 Score=26.54 Aligned_cols=82 Identities=11% Similarity=-0.030 Sum_probs=46.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~~~~~~~~~ 75 (126)
+.+|+|+..+..++... ....-+.+.+++.|.++.++......-+.. +. -..+||||+.+.......+
T Consensus 5 ~~~Igvi~~~~~~~~~~----~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~- 79 (304)
T 3o1i_D 5 DEKICAIYPHLKDSYWL----SVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH- 79 (304)
T ss_dssp CCEEEEEESCSCSHHHH----HHHHHHHHHHHHHTCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT-
T ss_pred CcEEEEEeCCCCCcHHH----HHHHHHHHHHHHcCCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH-
Confidence 46899998776654221 233345566677798888877542100000 00 1479999998764332121
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
.++.+. .++|++-+
T Consensus 80 --------~~~~~~-~~iPvV~~ 93 (304)
T 3o1i_D 80 --------NLKSWV-GNTPVFAT 93 (304)
T ss_dssp --------THHHHT-TTSCEEEC
T ss_pred --------HHHHHc-CCCCEEEe
Confidence 134444 68888766
No 188
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=62.80 E-value=23 Score=25.60 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHH----HHhhCCCeEEEEEccCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVR----MLAEEGETWDVFHVARG 48 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~----~l~~~g~~~~~~~~~~~ 48 (126)
||||+||...+.. ++++..+.+ .+++.|.+++++++.+.
T Consensus 2 MmkiLiI~gSpr~-------~s~t~~la~~~~~~l~~~g~eV~~~dL~~~ 44 (273)
T 1d4a_A 2 GRRALIVLAHSER-------TSFNYAMKEAAAAALKKKGWEVVESDLYAM 44 (273)
T ss_dssp CCEEEEEECCSCT-------TSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCC-------ccHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 5699999988763 244544444 45567899999998754
No 189
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=62.17 E-value=12 Score=22.92 Aligned_cols=51 Identities=8% Similarity=-0.136 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC-CeEEEEEccCCCCCCCCCCCCcCEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG-ETWDVFHVARGEFPDDDDFGSYDGYVI 64 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~p~~~~~~~~d~iii 64 (126)
++||+|++-+.. +...+...|+..| +++..+.-....+... .-..+|.|++
T Consensus 14 ~~~ilivdd~~~----------~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l-~~~~~dlvi~ 65 (135)
T 3snk_A 14 RKQVALFSSDPN----------FKRDVATRLDALAIYDVRVSETDDFLKGPP-ADTRPGIVIL 65 (135)
T ss_dssp CEEEEEECSCHH----------HHHHHHHHHHHTSSEEEEEECGGGGGGCCC-TTCCCSEEEE
T ss_pred CcEEEEEcCCHH----------HHHHHHHHHhhcCCeEEEEeccHHHHHHHH-hccCCCEEEE
Confidence 458888865432 2335777888877 7666443221111111 1246888777
No 190
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=61.55 E-value=8.9 Score=26.09 Aligned_cols=102 Identities=13% Similarity=0.070 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC--eEEEEEcc-CCCCCCC----CCCCCcCEEEEcCCCCCC-CCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE--TWDVFHVA-RGEFPDD----DDFGSYDGYVITGSCNDA-HGN 74 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~~~~~-~~~~p~~----~~~~~~d~iii~G~~~~~-~~~ 74 (126)
..||+|+..+....-...- ..-..+.|.+.|. +++++++. .-|+|.. ..-.+||++|-.|---.- ...
T Consensus 13 ~~ri~IV~arfn~~I~~~L----l~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~H 88 (156)
T 1c2y_A 13 SFRFAIVVARFNEFVTRRL----MEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSH 88 (156)
T ss_dssp TCCEEEEEESTTHHHHHHH----HHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTH
T ss_pred CCEEEEEEEeCcHHHHHHH----HHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchH
Confidence 3699999998876432221 1223455666774 56777653 1122311 012579999999864211 112
Q ss_pred chHHHH--HHHHHHHHHhcCCcE-EEEc---hHHHHHHHH
Q 033165 75 DVWICK--LIALLKQLDSLRKKV-LGIC---FGHQVRAIT 108 (126)
Q Consensus 75 ~~~~~~--~~~~i~~~~~~~~Pv-lGIC---~G~Q~la~~ 108 (126)
.+++.+ ...+.+-.++.++|| +||- -=.|.+.++
T Consensus 89 fd~Va~~v~~gl~~v~L~~~vPV~~GVLT~~~~eQA~~Ra 128 (156)
T 1c2y_A 89 YDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRA 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCEEEEEECCSSHHHHHHHE
T ss_pred HHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHc
Confidence 234433 334556667789995 3442 345777665
No 191
>1kz1_A 6,7-dimethyl-8-ribityllumazine synthase; riboflavin biosynthesis, ligand binding, transferase; 2.00A {Schizosaccharomyces pombe} SCOP: c.16.1.1 PDB: 2a59_A* 2a58_A* 2a57_A* 1kyv_A* 1kyx_A* 1kyy_A* 1kz9_A 1kz4_A 1kz6_A
Probab=61.50 E-value=14 Score=25.17 Aligned_cols=102 Identities=15% Similarity=0.114 Sum_probs=56.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCC---eEEEEEcc-CCCCCCC-C---CCCCcCEEEEcCCCCC-CC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGE---TWDVFHVA-RGEFPDD-D---DFGSYDGYVITGSCND-AH 72 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~---~~~~~~~~-~~~~p~~-~---~~~~~d~iii~G~~~~-~~ 72 (126)
..||+|+..+....-...- ..-..+.|.+ .|. +++++++. .-|+|.. . .-.+||+||-.|---. ..
T Consensus 17 ~~riaIV~arfn~~I~~~L----l~ga~~~l~~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T 92 (159)
T 1kz1_A 17 ELRILIVHARGNLQAIEPL----VKGAVETMIEKHDVKLENIDIESVPGSWELPQGIRASIARNTYDAVIGIGVLIKGST 92 (159)
T ss_dssp TCCEEEEECCTTHHHHHHH----HHHHHHHHHHHHCCCGGGEEEEECSSGGGHHHHHHHHHHHSCCSEEEEEEEEECCSS
T ss_pred CCEEEEEEeeCcHHHHHHH----HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCc
Confidence 4799999998876532221 1223455556 563 57777763 1233321 0 1147999999875311 11
Q ss_pred CCchHHHH--HHHHHHHHHhcCCcE-EEE---chHHHHHHHH
Q 033165 73 GNDVWICK--LIALLKQLDSLRKKV-LGI---CFGHQVRAIT 108 (126)
Q Consensus 73 ~~~~~~~~--~~~~i~~~~~~~~Pv-lGI---C~G~Q~la~~ 108 (126)
...+++.+ ...+.+-.++.++|| +|| =-=.|.+.++
T Consensus 93 ~Hfd~Va~~v~~Gl~~v~L~~~vPV~~GVLT~~~~eQA~~Ra 134 (159)
T 1kz1_A 93 MHFEYISEAVVHGLMRVGLDSGVPVILGLLTVLNEEQALYRA 134 (159)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEESSHHHHHHHB
T ss_pred hHHHHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHHh
Confidence 12233333 344556667789995 344 2457777776
No 192
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=61.45 E-value=4.2 Score=29.64 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=44.7
Q ss_pred HHHHHHHhhCCCeEEEEEccC--CCCCC-CCCCCCcCEEEEcCCCCCCC--CCchH-----HHHHHHHHHHHHhcCCcEE
Q 033165 27 GVFVRMLAEEGETWDVFHVAR--GEFPD-DDDFGSYDGYVITGSCNDAH--GNDVW-----ICKLIALLKQLDSLRKKVL 96 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~--~~~p~-~~~~~~~d~iii~G~~~~~~--~~~~~-----~~~~~~~i~~~~~~~~Pvl 96 (126)
.++.+.|+..+.+++++.... ..+|. .+.+++||.||+..-..+.. ....| .....+.|++.++.+-=++
T Consensus 36 ~~~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V~~GGgLi 115 (248)
T 3soz_A 36 DYLLSCLRQGNIDVDYMPAHIVQTRFPQTAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAEGGGLL 115 (248)
T ss_dssp HHHHHHHTTTTCEEEEEETTHHHHSCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhcCCceeEEeCchhhhhhCCCChHHHhcCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHHHhCCEEE
Confidence 458888999999999887532 24553 24578999999984432111 00011 1223567777777777666
Q ss_pred EE
Q 033165 97 GI 98 (126)
Q Consensus 97 GI 98 (126)
.+
T Consensus 116 ~~ 117 (248)
T 3soz_A 116 MI 117 (248)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 193
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=61.29 E-value=27 Score=21.83 Aligned_cols=37 Identities=5% Similarity=-0.016 Sum_probs=22.2
Q ss_pred HHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 27 GVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 27 ~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
..+.+.+.+.|.++++......+++. .++++|.||.+
T Consensus 40 ~kl~~~~~~~gi~~~V~~~~~~~~~~--~~~~~DlIist 76 (113)
T 1tvm_A 40 EEIKELCQSHNIPVELIQCRVNEIET--YMDGVHLICTT 76 (113)
T ss_dssp HHHHHHHHHTTCCEEEEEECTTTTTT--STTSCSEEEES
T ss_pred HHHHHHHHHcCCeEEEEEecHHHHhh--ccCCCCEEEEC
Confidence 34677888888876555443334432 35678955554
No 194
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=60.79 E-value=18 Score=27.07 Aligned_cols=91 Identities=13% Similarity=0.107 Sum_probs=46.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
.+|++|+...... +.+. ....+.+.+++.|.+++++++.+.+.+. .+++.++|+||+.-..+.- .-.+-+..+
T Consensus 256 ~~k~~i~~~S~~g-nT~~----la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~~-~~~~~~k~~ 329 (404)
T 2ohh_A 256 DERVTVIYDTMHG-STRK----MAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIYD-EPYPSVGDL 329 (404)
T ss_dssp CSEEEEEECCSSS-HHHH----HHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEETT-EECTHHHHH
T ss_pred CCcEEEEEECCCh-HHHH----HHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECccccc-cchHHHHHH
Confidence 3688888766542 2211 2334555566678888888865321110 0135689999886442221 111223334
Q ss_pred HHHHHHHHh---cCCcEEEEc
Q 033165 82 IALLKQLDS---LRKKVLGIC 99 (126)
Q Consensus 82 ~~~i~~~~~---~~~PvlGIC 99 (126)
.+.+..... .++|+.-+|
T Consensus 330 ld~l~~~~~~~l~~k~~~~~~ 350 (404)
T 2ohh_A 330 LMYLRGLKFNRTLTRKALVFG 350 (404)
T ss_dssp HHHHHHHCGGGTCCEEEEEEE
T ss_pred HHHhhhccccccCCCEEEEEE
Confidence 444333222 577776554
No 195
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=60.19 E-value=39 Score=23.62 Aligned_cols=81 Identities=11% Similarity=0.043 Sum_probs=41.6
Q ss_pred CCeEEEEEcCCCc--hHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC---CCC--CCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDS--EYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD---DDF--GSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~--~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~---~~~--~~~d~iii~G~~~~~~~~~ 75 (126)
..+|+|+-..... +. |..+..-+.+.+++.|.++.++....+.-... ..+ ..+||||+.+...+ +
T Consensus 8 s~~Igvv~~~~~~~~~~----~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-- 79 (288)
T 3gv0_A 8 TNVIALVLSVDEELMGF----TSQMVFGITEVLSTTQYHLVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN--D-- 79 (288)
T ss_dssp CCEEEEECBCCCCSSCH----HHHHHHHHHHHHTTSSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT--C--
T ss_pred CCEEEEEecCCccccHH----HHHHHHHHHHHHHHcCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC--c--
Confidence 4578888765442 21 11223334456667788877665432110000 001 57999999865321 1
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
+ .++.+.+.++|++-+
T Consensus 80 ~-------~~~~l~~~~iPvV~i 95 (288)
T 3gv0_A 80 P-------RVRFMTERNMPFVTH 95 (288)
T ss_dssp H-------HHHHHHHTTCCEEEE
T ss_pred H-------HHHHHhhCCCCEEEE
Confidence 1 233344467887654
No 196
>1ag9_A Flavodoxin; electron transport, reductive activation; HET: FMN BTB; 1.80A {Escherichia coli} SCOP: c.23.5.1 PDB: 1ahn_A*
Probab=59.86 E-value=6.9 Score=26.21 Aligned_cols=54 Identities=13% Similarity=0.273 Sum_probs=28.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~ 67 (126)
||++|+.....- +.+. ....+.+.++. ..++++++.... .+++.+||.||+.-+
T Consensus 1 Mki~IvY~S~tG-nT~~----iA~~Ia~~l~~--~~v~i~~~~~~~---~~~l~~~d~ii~g~p 54 (175)
T 1ag9_A 1 AITGIFFGSDTG-NTEN----IAKMIQKQLGK--DVADVHDIAKSS---KEDLEAYDILLLGIP 54 (175)
T ss_dssp CCEEEEECCSSS-HHHH----HHHHHHHHHCT--TTEEEEEGGGCC---HHHHHTCSEEEEECC
T ss_pred CEEEEEEECCCc-hHHH----HHHHHHHHhcc--CceEEEEcccCC---hhHhhhCCEEEEEEe
Confidence 488888766542 2221 22233333332 256777764321 124678998887644
No 197
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=59.71 E-value=7.8 Score=23.99 Aligned_cols=85 Identities=6% Similarity=-0.081 Sum_probs=39.9
Q ss_pred CC-CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHH
Q 033165 1 MG-GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 1 M~-~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
|+ ++||+|++.+.. +...+...|+. .|.++..+.-....+........+|.||+-=. .. ++.. -
T Consensus 1 M~~~~~ilivdd~~~----------~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~~dlvi~D~~-l~--~~~~-g 66 (140)
T 3lua_A 1 MSLDGTVLLIDYFEY----------EREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDSITLIIMDIA-FP--VEKE-G 66 (140)
T ss_dssp --CCCEEEEECSCHH----------HHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCCCSEEEECSC-SS--SHHH-H
T ss_pred CCCCCeEEEEeCCHH----------HHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCCCcEEEEeCC-CC--CCCc-H
Confidence 54 578999865443 22346778877 78876644321110111111146887777311 10 0111 0
Q ss_pred HHHHHHHHHH-HhcCCcEEEEc
Q 033165 79 CKLIALLKQL-DSLRKKVLGIC 99 (126)
Q Consensus 79 ~~~~~~i~~~-~~~~~PvlGIC 99 (126)
..+.+.+++. .....|++-+.
T Consensus 67 ~~~~~~l~~~~~~~~~~ii~ls 88 (140)
T 3lua_A 67 LEVLSAIRNNSRTANTPVIIAT 88 (140)
T ss_dssp HHHHHHHHHSGGGTTCCEEEEE
T ss_pred HHHHHHHHhCcccCCCCEEEEe
Confidence 1233334431 12478988776
No 198
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=59.17 E-value=7.3 Score=24.10 Aligned_cols=51 Identities=14% Similarity=0.071 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI 64 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii 64 (126)
++||+|++-+.. +...+...|+..|.++..+.-....+... .-..+|.||+
T Consensus 6 ~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-~~~~~dlvi~ 56 (136)
T 3kto_A 6 HPIIYLVDHQKD----------ARAALSKLLSPLDVTIQCFASAESFMRQQ-ISDDAIGMII 56 (136)
T ss_dssp -CEEEEECSCHH----------HHHHHHHHHTTSSSEEEEESSHHHHTTSC-CCTTEEEEEE
T ss_pred CCeEEEEcCCHH----------HHHHHHHHHHHCCcEEEEeCCHHHHHHHH-hccCCCEEEE
Confidence 468888865432 22347778887787666443111111111 1245787777
No 199
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=59.16 E-value=18 Score=23.84 Aligned_cols=87 Identities=13% Similarity=0.041 Sum_probs=42.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC----------------CCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD----------------DFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~----------------~~~~~d~iii~G~ 67 (126)
|||+|+...... ++++..+.+.+.+. .+.+.+++...++|.-+ .+.++|+||+.--
T Consensus 1 Mkilii~gS~~~-------~g~t~~la~~i~~~-l~~~~i~l~~~~lp~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~tP 72 (174)
T 3gfs_A 1 MNMLVINGTPRK-------HGRTRIAASYIAAL-YHTDLIDLSEFVLPVFNGEAEQSELLKVQELKQRVTKADAIVLLSP 72 (174)
T ss_dssp --CEEEECCCCT-------TCHHHHHHHHHHHH-TTCEEEETTTSCCCCCCCCHHHHTCHHHHHHHHHHHHCSSEEEEEE
T ss_pred CEEEEEECCCCC-------CCcHHHHHHHHHHh-CcceEEeeecCCCCCCCChhhccCcHHHHHHHHHHHHCCEEEEEcC
Confidence 488898877642 35666677666432 22255666543343211 3457898888532
Q ss_pred CCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 68 CNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 68 ~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
-+. +.-.+-+..+.+++....=.++|+.-++
T Consensus 73 ~y~-~~~p~~lk~~lD~l~~~~~~gK~~~~~~ 103 (174)
T 3gfs_A 73 EYH-SGMSGALKNALDFLSSEQFKYKPVALLA 103 (174)
T ss_dssp CSS-SSCCHHHHHHHHTCCHHHHTTCEEEEEE
T ss_pred CcC-CCCCHHHHHHHHHhCHhhhCCCcEEEEE
Confidence 221 1111223333343322111478876665
No 200
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=58.86 E-value=17 Score=25.81 Aligned_cols=81 Identities=12% Similarity=0.105 Sum_probs=43.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCC--CCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDF--GSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~--~~~d~iii~G~~~~~~~~~ 75 (126)
..+|+++......+... .+..-+.+.+++.|.++.++....+ +.. +.+ ..+||||+.+..... ..
T Consensus 2 ~~~Ig~i~~~~~~~~~~----~~~~gi~~~a~~~g~~l~~~~~~~~--~~~~~~~i~~l~~~~vdgiIi~~~~~~~--~~ 73 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRA----AETNVAKSEAEKRGITLKIADGQQK--QENQIKAVRSFVAQGVDAIFIAPVVATG--WE 73 (306)
T ss_dssp CCEEEEEECCCCSHHHH----HHHHHHHHHHHHHTCEEEEEECTTC--HHHHHHHHHHHHHHTCSEEEECCSSSSS--CH
T ss_pred CeEEEEEeCCCCCHHHH----HHHHHHHHHHHHcCCEEEEeCCCCC--HHHHHHHHHHHHHcCCCEEEEeCCChhh--HH
Confidence 36899998775544221 1223345566777888877653211 100 011 479999998653211 11
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
+.++.+.+.++|++-+
T Consensus 74 -------~~~~~~~~~~iPvV~~ 89 (306)
T 2vk2_A 74 -------PVLKEAKDAEIPVFLL 89 (306)
T ss_dssp -------HHHHHHHHTTCCEEEE
T ss_pred -------HHHHHHHHCCCCEEEe
Confidence 1233344467887654
No 201
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=58.14 E-value=27 Score=25.80 Aligned_cols=42 Identities=17% Similarity=0.174 Sum_probs=27.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|.+|||+++.........+ .+...+.+.|.+.|.+++++...
T Consensus 38 ~~~mkIl~v~~~~~~GG~~----~~~~~l~~~L~~~G~~v~v~~~~ 79 (416)
T 2x6q_A 38 LKGRSFVHVNSTSFGGGVA----EILHSLVPLLRSIGIEARWFVIE 79 (416)
T ss_dssp TTTCEEEEEESCSSSSTHH----HHHHHHHHHHHHTTCEEEEEECC
T ss_pred hhccEEEEEeCCCCCCCHH----HHHHHHHHHHHhCCCeEEEEEcc
Confidence 6789999998764221111 14445677888889999877643
No 202
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=57.75 E-value=2.6 Score=33.05 Aligned_cols=67 Identities=12% Similarity=0.038 Sum_probs=44.0
Q ss_pred CCeEEEEEcCCCchH------HHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCCCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEY------VKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDFGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~------~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~~~~d~iii~G~~~ 69 (126)
++|++||-++..--. .-+-+++...++..+|++.|.++..+.+..++.... +.++++|.||.+||.+
T Consensus 181 ~prv~IistGdEl~~~g~~~~~G~i~dsN~~~L~~~l~~~G~~v~~~~iv~Dd~~~i~~~l~~a~~~~DlVittGG~s 258 (419)
T 2fts_A 181 FPVVAVMSTGNELLNPEDDLLPGKIRDSNRSTLLATIQEHGYPTINLGIVGDNPDDLLNALNEGISRADVIITSGGVS 258 (419)
T ss_dssp CCCEEEEEECTTEECTTSCCCTTCEECCHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHHHHCSEEEEESCCS
T ss_pred CCEEEEEEechhccCCCCCCCCCcEecCchHHHHHHHHHCCCEEEEEeecCCCHHHHHHHHHHHHhcCCEEEEcCCCc
Confidence 578999988765310 112356788889999999999887665544431110 0124689999999964
No 203
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=57.61 E-value=46 Score=23.26 Aligned_cols=59 Identities=14% Similarity=0.126 Sum_probs=31.5
Q ss_pred CCeEEEEEcC-C---CchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-------CCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCA-E---DSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-------DFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~-~---~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-------~~~~~d~iii~G~ 67 (126)
+.+|+++..+ . .++. |..+..-+.+.+++.|.++.++....+ +... .-..+||||+.+.
T Consensus 4 s~~Ig~i~~~~~~~~~~~~----~~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHI----LDQFLSSMVREAGAVNYFVLPFPFSED--RSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCT----HHHHHHHHHHHHHHTTCEEEECCCCSS--TTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChh----HHHHHHHHHHHHHHcCCEEEEEeCCCc--hHHHHHHHHHHHcCCCCEEEEeec
Confidence 3578888765 3 3221 112233345666778888766543211 1110 0147999999865
No 204
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=57.30 E-value=43 Score=22.87 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=36.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~ 68 (126)
++|++|+.....- +.++ +...+.+.+...|.+++++++.+. . +++.++|.+|+.-+.
T Consensus 21 ~~kv~IvY~S~tG-nTe~----~A~~ia~~l~~~g~~v~v~~l~~~--~--~~l~~~d~vi~g~~T 77 (191)
T 1bvy_F 21 NTPLLVLYGSNMG-TAEG----TARDLADIAMSKGFAPQVATLDSH--A--GNLPREGAVLIVTAS 77 (191)
T ss_dssp CCCEEEEEECSSS-HHHH----HHHHHHHHHHTTTCCCEEEEGGGS--T--TCCCSSSEEEEEECC
T ss_pred CCeEEEEEECCCh-HHHH----HHHHHHHHHHhCCCceEEeeHHHh--h--hhhhhCCeEEEEEee
Confidence 4688888665442 2221 455666777777888888887542 1 257788988875443
No 205
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=57.15 E-value=16 Score=25.72 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~~~~~~~~~ 75 (126)
..+|+++..+..++... ....-+.+.+++.|.++.++... + +.. +. -.++||||+.+....
T Consensus 2 ~~~Ig~i~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~-~--~~~~~~~i~~l~~~~vdgiii~~~~~~----- 69 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQ----TEWKFADKAGKDLGFEVIKIAVP-D--GEKTLNAIDSLAASGAKGFVICTPDPK----- 69 (306)
T ss_dssp CEEEEEEESCTTSHHHH----HHHHHHHHHHHHHTEEEEEEECC-S--HHHHHHHHHHHHHTTCCEEEEECSCGG-----
T ss_pred CeEEEEEeCCCCchHHH----HHHHHHHHHHHHcCCEEEEeCCC-C--HHHHHHHHHHHHHcCCCEEEEeCCCch-----
Confidence 35889998776654321 23334556666778887766542 1 110 01 147999999875221
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
.....++.+.+.++|++-+
T Consensus 70 ----~~~~~~~~~~~~~iPvV~~ 88 (306)
T 8abp_A 70 ----LGSAIVAKARGYDMKVIAV 88 (306)
T ss_dssp ----GHHHHHHHHHHTTCEEEEE
T ss_pred ----hhHHHHHHHHHCCCcEEEe
Confidence 1122344555668888654
No 206
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=56.94 E-value=14 Score=24.05 Aligned_cols=96 Identities=11% Similarity=0.020 Sum_probs=54.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-------CCC--CCcCEEEEcCCCCCCC--
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-------DDF--GSYDGYVITGSCNDAH-- 72 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-------~~~--~~~d~iii~G~~~~~~-- 72 (126)
+||+++--.-..........+|+..+.+.|...+..+++++......... ..+ .++|.|+|..|..+..
T Consensus 3 ~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND~~~~ 82 (185)
T 3hp4_A 3 NTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDALLEQYEPTHVLIELGANDGLRG 82 (185)
T ss_dssp EEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCHHHHHTT
T ss_pred CeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHHHhhcCCCEEEEEeecccCCCC
Confidence 46666644333211001123789999999988888888887542110000 011 2789999987754331
Q ss_pred -CCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 73 -GNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 73 -~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
+...+...+.++++.+.+.+.+++=++
T Consensus 83 ~~~~~~~~~~~~~i~~~~~~~~~vvl~~ 110 (185)
T 3hp4_A 83 FPVKKMQTNLTALVKKSQAANAMTALME 110 (185)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cCHHHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 112456667777877776666665554
No 207
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=56.66 E-value=33 Score=24.12 Aligned_cols=80 Identities=9% Similarity=-0.009 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----CCC--CCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----DDD--FGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----~~~--~~~~d~iii~G~~~~~~~~~ 75 (126)
..+|+|+-.+..++.. ..+..-+.+.+++.|.++.++....+ +. .+. -..+||||+.+... ..
T Consensus 16 s~~Igvi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiIi~~~~~----~~ 85 (289)
T 2fep_A 16 TTTVGVIIPDISSIFY----SELARGIEDIATMYKYNIILSNSDQN--MEKELHLLNTMLGKQVDGIVFMGGNI----TD 85 (289)
T ss_dssp CCEEEEEESCTTSHHH----HHHHHHHHHHHHHTTCEEEEEECTTC--HHHHHHHHHHHHHTTCSEEEECCSCC----CH
T ss_pred CCeEEEEeCCCCCchH----HHHHHHHHHHHHHcCCEEEEEeCCCC--HHHHHHHHHHHHhCCCCEEEEecCCC----CH
Confidence 4688898866554321 12333455666778988877653211 10 001 15799999987532 11
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 76 VWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
+ .++.+.+.++|+.-+.
T Consensus 86 ~-------~~~~l~~~~iPvV~~~ 102 (289)
T 2fep_A 86 E-------HVAEFKRSPVPIVLAA 102 (289)
T ss_dssp H-------HHHHHHHSSSCEEEES
T ss_pred H-------HHHHHHhcCCCEEEEc
Confidence 1 2333345678876653
No 208
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=56.65 E-value=13 Score=22.43 Aligned_cols=33 Identities=9% Similarity=-0.042 Sum_probs=20.7
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|.++||+|++.+.. +...+.+.|+..|.++..+
T Consensus 3 m~~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 35 (132)
T 2rdm_A 3 LEAVTILLADDEAI----------LLLDFESTLTDAGFLVTAV 35 (132)
T ss_dssp CSSCEEEEECSSHH----------HHHHHHHHHHHTTCEEEEE
T ss_pred CCCceEEEEcCcHH----------HHHHHHHHHHHcCCEEEEE
Confidence 44578888865432 2234677787778766543
No 209
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=56.64 E-value=12 Score=23.11 Aligned_cols=32 Identities=25% Similarity=0.102 Sum_probs=20.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV 42 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 42 (126)
|++.||+|++.+.. +...+...|+..|.++..
T Consensus 1 m~~~~ILivdd~~~----------~~~~l~~~L~~~g~~v~~ 32 (138)
T 3c3m_A 1 MSLYTILVVDDSPM----------IVDVFVTMLERGGYRPIT 32 (138)
T ss_dssp -CCCEEEEECSCHH----------HHHHHHHHHHHTTCEEEE
T ss_pred CCcceEEEEeCCHH----------HHHHHHHHHHHcCceEEE
Confidence 78889999965443 223466778777776553
No 210
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=56.20 E-value=46 Score=22.88 Aligned_cols=79 Identities=13% Similarity=0.023 Sum_probs=37.9
Q ss_pred EEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC---CCCCCCC--CCcCEEEEcCCCCCCCCCchHHHH
Q 033165 6 FAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE---FPDDDDF--GSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 6 i~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~---~p~~~~~--~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
|+|+..+..++.. ..+..-+.+.+++.|.++.++....+. ....+.+ .++||||+.+...+ +
T Consensus 2 Igvi~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~--~------- 68 (276)
T 2h0a_A 2 VSVLLPFVATEFY----RRLVEGIEGVLLEQRYDLALFPILSLARLKRYLENTTLAYLTDGLILASYDLT--E------- 68 (276)
T ss_dssp EEEEECCSCCHHH----HHHHHHHHHHHGGGTCEEEECCCCSCCCCC---------CCCSEEEEESCCCC----------
T ss_pred EEEEECCCCCHHH----HHHHHHHHHHHHHCCCEEEEEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCC--H-------
Confidence 6677655444321 123334556667778877765432211 0001111 57999999876322 1
Q ss_pred HHHHHHHHHhcCCcEEEEc
Q 033165 81 LIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC 99 (126)
+.++.+.+.++|++-+.
T Consensus 69 --~~~~~~~~~~iPvV~~~ 85 (276)
T 2h0a_A 69 --RFEEGRLPTERPVVLVD 85 (276)
T ss_dssp -------CCSCSSCEEEES
T ss_pred --HHHHHHhhcCCCEEEEe
Confidence 11333434578877653
No 211
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=55.73 E-value=30 Score=24.37 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHH----HHHhhCCCeEEEEEccCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFV----RMLAEEGETWDVFHVARG 48 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~----~~l~~~g~~~~~~~~~~~ 48 (126)
.|||+||...+.. ++++..+. +.+++.|.+++++++.+.
T Consensus 1 ~mkiLiI~gspr~-------~S~t~~l~~~~~~~l~~~g~ev~~~dL~~~ 43 (228)
T 3tem_A 1 GKKVLIVYAHQEP-------KSFNGSLKNVAVDELSRQGCTVTVSDLYAM 43 (228)
T ss_dssp CCEEEEEECCSCT-------TSHHHHHHHHHHHHHHHHTCEEEEEETTTT
T ss_pred CCEEEEEEeCCCC-------CCHHHHHHHHHHHHHHHCCCEEEEEEhhhc
Confidence 3699999988764 35555554 444556899999998753
No 212
>2e11_A Hydrolase; dimethylarsenic inhibi complex, cacodylate; 1.73A {Xanthomonas campestris PV}
Probab=55.67 E-value=6.2 Score=28.14 Aligned_cols=21 Identities=5% Similarity=-0.026 Sum_probs=15.9
Q ss_pred CCCCeEEEEEcCCCchHHHHh
Q 033165 1 MGGKKFAVLLCAEDSEYVKKK 21 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~ 21 (126)
|+++||+++|......+...|
T Consensus 1 M~~~kva~~Q~~~~~~d~~~n 21 (266)
T 2e11_A 1 MHDLRISLVQGSTRWHDPAGN 21 (266)
T ss_dssp CCCEEEEEEECCCCTTCHHHH
T ss_pred CCccEEEEEeCCCCcCCHHHH
Confidence 888999999998775444443
No 213
>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*
Probab=55.62 E-value=13 Score=28.29 Aligned_cols=53 Identities=8% Similarity=-0.130 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
||||++....+.+.. .+.+++++.+.++....-...+ ...+.+.++|++++.+
T Consensus 1 Mmki~~~~~~~~~~~----------~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~d~li~~~ 53 (343)
T 2yq5_A 1 MTKIAMYNVSPIEVP----------YIEDWAKKNDVEIKTTDQALTS-ATVDLAEGCSSVSLKP 53 (343)
T ss_dssp -CEEEEESCCGGGHH----------HHHHHHHHHTCEEEEESSCCST-TGGGGGTTCSEEEECC
T ss_pred CceEEEEecCcccHH----------HHHHHHHhCCeEEEECCCCCCH-HHHHHhcCCcEEEEcC
Confidence 589999885443322 2445565667776654321000 0112356788887753
No 214
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=55.57 E-value=12 Score=22.89 Aligned_cols=32 Identities=16% Similarity=0.150 Sum_probs=19.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV 42 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 42 (126)
|.++||+|++.+.. +...+...|+..|.++..
T Consensus 1 m~~~~Ilivdd~~~----------~~~~l~~~L~~~g~~v~~ 32 (132)
T 3crn_A 1 MSLKRILIVDDDTA----------ILDSTKQILEFEGYEVEI 32 (132)
T ss_dssp --CCEEEEECSCHH----------HHHHHHHHHHHTTCEEEE
T ss_pred CCccEEEEEeCCHH----------HHHHHHHHHHHCCceEEE
Confidence 78889999865443 223466777777876653
No 215
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=54.97 E-value=38 Score=23.95 Aligned_cols=79 Identities=8% Similarity=0.033 Sum_probs=43.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----C--CCCCcCEEEEcCCCCCCCCCchH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----D--DFGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~--~~~~~d~iii~G~~~~~~~~~~~ 77 (126)
.+|+|+..+..++.. ..+..-+.+.+++.|.++.++....+. ... + .-..+||||+.+...+ + +
T Consensus 16 ~~Igvi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiI~~~~~~~--~--~- 85 (303)
T 3kke_A 16 GTIGLIVPDVNNAVF----ADMFSGVQMAASGHSTDVLLGQIDAPP-RGTQQLSRLVSEGRVDGVLLQRREDF--D--D- 85 (303)
T ss_dssp -CEEEEESCTTSTTH----HHHHHHHHHHHHHTTCCEEEEECCSTT-HHHHHHHHHHHSCSSSEEEECCCTTC--C--H-
T ss_pred CEEEEEeCCCcChHH----HHHHHHHHHHHHHCCCEEEEEeCCCCh-HHHHHHHHHHHhCCCcEEEEecCCCC--c--H-
Confidence 568888776554321 123334556677789998887643221 000 0 0257999999876322 1 1
Q ss_pred HHHHHHHHHHHHhcCCcEEEE
Q 033165 78 ICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 78 ~~~~~~~i~~~~~~~~PvlGI 98 (126)
+.++.+.+ ++|+.-+
T Consensus 86 -----~~~~~l~~-~iPvV~i 100 (303)
T 3kke_A 86 -----DMLAAVLE-GVPAVTI 100 (303)
T ss_dssp -----HHHHHHHT-TSCEEEE
T ss_pred -----HHHHHHhC-CCCEEEE
Confidence 03444455 7887655
No 216
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.53 E-value=19 Score=26.51 Aligned_cols=47 Identities=23% Similarity=0.037 Sum_probs=34.7
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH--------HHHHHHHhCCc
Q 033165 61 GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG--------HQVRAITVFSS 112 (126)
Q Consensus 61 ~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G--------~Q~la~~~Gg~ 112 (126)
.|++++|+... + -.++.++++++.+.++.+-=|+|| +|.++.+..+.
T Consensus 110 IIlf~ds~~~~--~---~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~ 164 (268)
T 4b4t_W 110 IVAFVCSPISD--S---RDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNP 164 (268)
T ss_dssp EEEEECSCCSS--C---HHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSS
T ss_pred EEEEECCCCCC--C---HHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCC
Confidence 57778887553 2 245667788888889998888888 68888887653
No 217
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=54.41 E-value=9.8 Score=26.33 Aligned_cols=60 Identities=8% Similarity=0.061 Sum_probs=34.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHH----hhCCCeEEEEEccCCC-CC-CCCCCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRML----AEEGETWDVFHVARGE-FP-DDDDFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~~~~~~~~~~~-~p-~~~~~~~~d~iii~ 65 (126)
..||+||...+.... ..++++..+.+.+ ++.|.+++++++..++ .. ..+.+..+|+||+.
T Consensus 12 ~~~iLii~gsP~~~~---s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~ 77 (204)
T 2amj_A 12 SSNILIINGAKKFAH---SNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQ 77 (204)
T ss_dssp CCEEEEEECCC---------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEE
T ss_pred CcCEEEEEcCCCccc---CcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEE
Confidence 469999998876321 1235555555444 4458899999986421 00 01245688999885
No 218
>1ejb_A Lumazine synthase; analysis, inhibitor complex, vitamin biosynthesis transferase; HET: INJ; 1.85A {Saccharomyces cerevisiae} SCOP: c.16.1.1 PDB: 2jfb_A
Probab=54.28 E-value=9.1 Score=26.36 Aligned_cols=102 Identities=15% Similarity=0.099 Sum_probs=56.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC---eEEEEEcc-CCCCCCC-C---C-----CCCcCEEEEcCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE---TWDVFHVA-RGEFPDD-D---D-----FGSYDGYVITGSCN 69 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~-~~~~p~~-~---~-----~~~~d~iii~G~~~ 69 (126)
..||+|+..+....-... -..-..+.|.+.|. +++++++. .-|+|.. . . -..||+||-.|---
T Consensus 16 ~~ri~IV~arfn~~I~~~----Ll~gA~~~L~~~Gv~~~~i~v~~VPGafEiP~aak~la~~~~~~~~~yDavIaLG~VI 91 (168)
T 1ejb_A 16 KIRVGIIHARWNRVIIDA----LVKGAIERMASLGVEENNIIIETVPGSYELPWGTKRFVDRQAKLGKPLDVVIPIGVLI 91 (168)
T ss_dssp TCCEEEEECCTTHHHHHH----HHHHHHHHHHHTTCCGGGEEEEECSSGGGHHHHHHHHHHHHHHTTCCCSEEEEEEEEE
T ss_pred CCEEEEEEEeCcHHHHHH----HHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhhccccCCCcCEEEEecccc
Confidence 469999999887642221 11223355666664 56777653 1233321 0 1 24699999988641
Q ss_pred C-CCCCchHHHH--HHHHHHHHHhcCCcE-EEEc--h-HHHHHHHH
Q 033165 70 D-AHGNDVWICK--LIALLKQLDSLRKKV-LGIC--F-GHQVRAIT 108 (126)
Q Consensus 70 ~-~~~~~~~~~~--~~~~i~~~~~~~~Pv-lGIC--~-G~Q~la~~ 108 (126)
. .....+++.. ...+.+-.++.++|| +||- . =-|.+.++
T Consensus 92 rG~T~Hfd~Va~~vs~Gl~~vsL~~~vPV~~GVLT~~~~eQA~~Ra 137 (168)
T 1ejb_A 92 KGSTMHFEYISDSTTHALMNLQEKVDMPVIFGLLTCMTEEQALARA 137 (168)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHTSCBCCEEEEESSHHHHHHHB
T ss_pred cCCchHHHHHHHHHHHHHHHHHhhcCCCEEEEEecCCCHHHHHHhc
Confidence 1 1112233332 345566667789994 5643 3 45888876
No 219
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=54.06 E-value=41 Score=22.81 Aligned_cols=39 Identities=5% Similarity=0.136 Sum_probs=27.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHh---hCCCeEEEEEccCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA---EEGETWDVFHVARGE 49 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~---~~g~~~~~~~~~~~~ 49 (126)
|||+||...+.. ++++..+.+.+. ..+.+++++++.+..
T Consensus 1 MkiLiI~gspr~-------~s~t~~l~~~~~~~~~~g~~v~~~dL~~~~ 42 (196)
T 3lcm_A 1 MKILIVYTHPNP-------TSFNAEILKQVQTNLSKEHTVSTLDLYAEH 42 (196)
T ss_dssp CEEEEEECCSCT-------TSHHHHHHHHHHHHSCTTSEEEEEETTTTT
T ss_pred CEEEEEEeCCCC-------CChHHHHHHHHHHHhcCCCeEEEEEcccCC
Confidence 589999887653 356666665553 358899999987543
No 220
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=53.33 E-value=19 Score=23.30 Aligned_cols=83 Identities=11% Similarity=0.009 Sum_probs=44.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-----CCCCcCEEEEcCCCCCCCCCc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-----DFGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-----~~~~~d~iii~G~~~~~~~~~ 75 (126)
|.+.|+++.-...+....-. .++..+|+..|+++...-.. .|..+ .-.++|.|.++..-. ...
T Consensus 1 ~~~~~vvla~~~~d~HdiG~------~~v~~~l~~~G~~Vi~lG~~---~p~e~~v~~a~~~~~d~v~lS~~~~---~~~ 68 (137)
T 1ccw_A 1 MEKKTIVLGVIGSDCHAVGN------KILDHAFTNAGFNVVNIGVL---SPQELFIKAAIETKADAILVSSLYG---QGE 68 (137)
T ss_dssp CCCCEEEEEEETTCCCCHHH------HHHHHHHHHTTCEEEEEEEE---ECHHHHHHHHHHHTCSEEEEEECSS---THH
T ss_pred CCCCEEEEEeCCCchhHHHH------HHHHHHHHHCCCEEEECCCC---CCHHHHHHHHHhcCCCEEEEEecCc---CcH
Confidence 77778888866655433322 24567888999887644322 12110 114789999987632 112
Q ss_pred hHHHHHHHHHHHHHhcCCcE
Q 033165 76 VWICKLIALLKQLDSLRKKV 95 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~Pv 95 (126)
+...++.+.+++.-..++|+
T Consensus 69 ~~~~~~i~~l~~~g~~~i~v 88 (137)
T 1ccw_A 69 IDCKGLRQKCDEAGLEGILL 88 (137)
T ss_dssp HHHTTHHHHHHHTTCTTCEE
T ss_pred HHHHHHHHHHHhcCCCCCEE
Confidence 33444444454431124555
No 221
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=53.06 E-value=51 Score=23.07 Aligned_cols=60 Identities=10% Similarity=0.122 Sum_probs=35.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-----CCCCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-----DFGSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-----~~~~~d~iii~G~~ 68 (126)
..+|+|+. +..++.. ..+..-+.+.+++.|.++.++....+. ...+ .-..+||||+.+..
T Consensus 12 ~~~Igvi~-~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~l~~~~vdgiIi~~~~ 76 (289)
T 3k9c_A 12 SRLLGVVF-ELQQPFH----GDLVEQIYAAATRRGYDVMLSAVAPSR-AEKVAVQALMRERCEAAILLGTR 76 (289)
T ss_dssp -CEEEEEE-ETTCHHH----HHHHHHHHHHHHHTTCEEEEEEEBTTB-CHHHHHHHHTTTTEEEEEEETCC
T ss_pred CCEEEEEE-ecCCchH----HHHHHHHHHHHHHCCCEEEEEeCCCCH-HHHHHHHHHHhCCCCEEEEECCC
Confidence 35788888 5544321 223344556777889988887754321 0000 12579999998763
No 222
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=52.74 E-value=23 Score=21.84 Aligned_cols=31 Identities=6% Similarity=-0.015 Sum_probs=19.3
Q ss_pred CCCC-eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEE
Q 033165 1 MGGK-KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWD 41 (126)
Q Consensus 1 M~~~-ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 41 (126)
|.|. ||+|++.+... ...+.+.|+..|.++.
T Consensus 1 m~m~~~ILivdd~~~~----------~~~l~~~L~~~g~~v~ 32 (137)
T 3cfy_A 1 MSLRPRVLLVEDSTSL----------AILYKQYVKDEPYDIF 32 (137)
T ss_dssp --CCCEEEEECSCTTH----------HHHHHHHTTTSSSEEE
T ss_pred CCccceEEEEeCCHHH----------HHHHHHHHHhcCceEE
Confidence 6666 89999766542 3346677777777654
No 223
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=52.46 E-value=9.7 Score=22.72 Aligned_cols=33 Identities=18% Similarity=0.072 Sum_probs=19.1
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|.++||+|++.+.. +...+.+.|+..|.++...
T Consensus 3 mm~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 35 (127)
T 2gkg_A 3 HMSKKILIVESDTA----------LSATLRSALEGRGFTVDET 35 (127)
T ss_dssp ---CEEEEECSCHH----------HHHHHHHHHHHHTCEEEEE
T ss_pred CCCCeEEEEeCCHH----------HHHHHHHHHHhcCceEEEe
Confidence 44468999865432 2234677777778766543
No 224
>2wc1_A Flavodoxin; electron transport, flavoprotein; HET: FMN; 2.17A {Rhodobacter capsulatus}
Probab=52.20 E-value=1.4 Score=29.93 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CC--CeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EG--ETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g--~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
|+|++|+.....- .+..+.+.+.+ .+ .+++++++.+.+ .+++.+||.||+.-
T Consensus 1 M~kilIiY~S~tG---------nT~~iA~~ia~~l~~~~~v~~~~~~~~~---~~~l~~~d~ii~g~ 55 (182)
T 2wc1_A 1 MAKIGLFFGSDTG---------TTRKIAKQIKDMFDDEVMAKPLNVNRAD---VADFMAYDFLILGT 55 (182)
T ss_dssp CCSEEEEECCSSS---------HHHHHHHHHHTTSCTTTBCCCEEGGGCC---HHHHHHCSEEEEEE
T ss_pred CcEEEEEEECCCc---------hHHHHHHHHHHHhcccCceEEEEcccCC---HHHHhhCCeEEEEE
Confidence 4689999766542 23345555533 22 345666654321 12467899988853
No 225
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=52.01 E-value=49 Score=24.70 Aligned_cols=81 Identities=9% Similarity=-0.035 Sum_probs=43.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCcCEEEE-cCCCCCCCCCchHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSYDGYVI-TGSCNDAHGNDVWICKL 81 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~d~iii-~G~~~~~~~~~~~~~~~ 81 (126)
.||.++-++....... .+..++++ .+..+......+.....+..+..-|.+|+ +-|..+ .+.
T Consensus 55 ~~I~i~G~G~S~~~a~--------~~~~~l~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~t--------~e~ 118 (355)
T 2a3n_A 55 SSLFFASVGGSLAPMM--------AINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDT--------KES 118 (355)
T ss_dssp SCEEEEECGGGHHHHH--------HHHHHHHHHCCSCEEEEEHHHHHHHCCTTCCTTCEEEEECSSSCC--------HHH
T ss_pred CEEEEEEccHHHHHHH--------HHHHHHHhhcCCeEEEcCcHHHHhhchhcCCCCCEEEEEeCCCCC--------HHH
Confidence 5788887776533221 13344555 67777766542110111112345565444 333221 335
Q ss_pred HHHHHHHHhcCCcEEEEch
Q 033165 82 IALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 82 ~~~i~~~~~~~~PvlGIC~ 100 (126)
.+.++.+.+.+.++++||-
T Consensus 119 ~~a~~~ak~~Ga~vi~IT~ 137 (355)
T 2a3n_A 119 VAIAEWCKAQGIRVVAITK 137 (355)
T ss_dssp HHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHCCCeEEEEEC
Confidence 5667777778999999985
No 226
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=51.80 E-value=16 Score=25.61 Aligned_cols=82 Identities=9% Similarity=-0.033 Sum_probs=42.4
Q ss_pred CCeEEEEEcCCC--chHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc-CCCCCCC-----CC--CCCcCEEEEcCCCCCCC
Q 033165 3 GKKFAVLLCAED--SEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA-RGEFPDD-----DD--FGSYDGYVITGSCNDAH 72 (126)
Q Consensus 3 ~~ki~Il~~~~~--~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~-~~~~p~~-----~~--~~~~d~iii~G~~~~~~ 72 (126)
..+|+++..+.. ++... .+..-+.+.+++.|.++.++... ..+ +.. +. -.++||||+.+...+
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgii~~~~~~~-- 77 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWS----VLVEGAQMAAKEYEIKLEFMAPEKEED-YLVQNELIEEAIKRKPDVILLAAADYE-- 77 (289)
T ss_dssp CCEEEEECSCCCSSSHHHH----HHHHHHHHHHHHHTCEEEECCCSSTTC-HHHHHHHHHHHHHTCCSEEEECCSCTT--
T ss_pred CcEEEEEeCCCCCCchHHH----HHHHHHHHHHHHcCCEEEEecCCCCCC-HHHHHHHHHHHHHhCCCEEEEeCCChH--
Confidence 458888876554 43211 22333455666778887765542 111 100 00 157999999875321
Q ss_pred CCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 73 GNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 73 ~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
. ..+.++.+.+.++|++.+
T Consensus 78 -~------~~~~~~~~~~~~iPvV~~ 96 (289)
T 3brs_A 78 -K------TYDAAKEIKDAGIKLIVI 96 (289)
T ss_dssp -T------THHHHTTTGGGTCEEEEE
T ss_pred -H------hHHHHHHHHHCCCcEEEE
Confidence 1 112234444567787654
No 227
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=51.53 E-value=40 Score=25.05 Aligned_cols=61 Identities=10% Similarity=0.111 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~ 68 (126)
.+|++|+...... +.+. ....+.+.++..|.+++++++...+... .+.+.++|+||+.-+.
T Consensus 252 ~~kv~i~y~S~~G-nt~~----lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~ 313 (402)
T 1e5d_A 252 TNKVVIFYDSMWH-STEK----MARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPT 313 (402)
T ss_dssp CSEEEEEECCSSS-HHHH----HHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCC
T ss_pred CCcEEEEEECCCh-hHHH----HHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCc
Confidence 4688888766543 2211 1234555666678888888865321100 0123689999887543
No 228
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}
Probab=51.24 E-value=14 Score=26.96 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC---------CCCCCCCcCEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP---------DDDDFGSYDGYVI 64 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p---------~~~~~~~~d~iii 64 (126)
|+.|||+|+..+... ....+.|.+.|.++.+....+.++. ..+.+.++|+++.
T Consensus 5 ~~~mki~v~~~~~~~-----------~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~ 66 (300)
T 2rir_A 5 LTGLKIAVIGGDARQ-----------LEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQQIDSIIL 66 (300)
T ss_dssp CCSCEEEEESBCHHH-----------HHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGGGCSEEEC
T ss_pred ccCCEEEEECCCHHH-----------HHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHhcCCEEEe
Confidence 556799988553221 1234566778888866543222210 0123567999887
No 229
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=51.15 E-value=58 Score=22.55 Aligned_cols=79 Identities=9% Similarity=0.038 Sum_probs=41.4
Q ss_pred CCeEEEEEcC-----CCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----C--CCCCcCEEEEcCCCCC
Q 033165 3 GKKFAVLLCA-----EDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----D--DFGSYDGYVITGSCND 70 (126)
Q Consensus 3 ~~ki~Il~~~-----~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~--~~~~~d~iii~G~~~~ 70 (126)
..+|+|+... ..++.. ..+..-+.+.+++.|.++.++....+ +.. + .-..+||||+.+...+
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~~vdgiIi~~~~~~ 81 (292)
T 3k4h_A 8 TKTLGLVMPSSASKAFQNPFF----PEVIRGISSFAHVEGYALYMSTGETE--EEIFNGVVKMVQGRQIGGIILLYSREN 81 (292)
T ss_dssp CCEEEEECSSCHHHHTTSTHH----HHHHHHHHHHHHHTTCEEEECCCCSH--HHHHHHHHHHHHTTCCCEEEESCCBTT
T ss_pred CCEEEEEecCCccccccCHHH----HHHHHHHHHHHHHcCCEEEEEeCCCC--HHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 4678888776 332211 12233344566677887776543211 000 0 0157999999875321
Q ss_pred CCCCchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 71 AHGNDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 71 ~~~~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
+ + .++.+.+.++|++-+
T Consensus 82 --~--~-------~~~~l~~~~iPvV~~ 98 (292)
T 3k4h_A 82 --D--R-------IIQYLHEQNFPFVLI 98 (292)
T ss_dssp --C--H-------HHHHHHHTTCCEEEE
T ss_pred --h--H-------HHHHHHHCCCCEEEE
Confidence 1 1 233444567887654
No 230
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=49.98 E-value=36 Score=23.81 Aligned_cols=82 Identities=13% Similarity=0.001 Sum_probs=41.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCCCCCCCCCc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGSCNDAHGND 75 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~~~~~~~~~ 75 (126)
..+|+++......+... ....-+.+.+++.|.++.++.....+ +.. +. -.++||||+.+.. .
T Consensus 4 ~~~Ig~i~~~~~~~~~~----~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgiii~~~~--~---- 72 (303)
T 3d02_A 4 EKTVVNISKVDGMPWFN----RMGEGVVQAGKEFNLNASQVGPSSTD-APQQVKIIEDLIARKVDAITIVPND--A---- 72 (303)
T ss_dssp CEEEEEECSCSSCHHHH----HHHHHHHHHHHHTTEEEEEECCSSSC-HHHHHHHHHHHHHTTCSEEEECCSC--H----
T ss_pred ceEEEEEeccCCChHHH----HHHHHHHHHHHHcCCEEEEECCCCCC-HHHHHHHHHHHHHcCCCEEEEecCC--h----
Confidence 35788887655443211 12333455666778776544322111 110 01 1579999997641 1
Q ss_pred hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 76 VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
......++.+.+.++|++-+
T Consensus 73 ---~~~~~~~~~~~~~~ipvV~~ 92 (303)
T 3d02_A 73 ---NVLEPVFKKARDAGIVVLTN 92 (303)
T ss_dssp ---HHHHHHHHHHHHTTCEEEEE
T ss_pred ---HHHHHHHHHHHHCCCeEEEE
Confidence 11223344555567787654
No 231
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=49.42 E-value=38 Score=24.19 Aligned_cols=54 Identities=20% Similarity=0.385 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC--CCCC------CCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD--DDDF------GSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~--~~~~------~~~d~iii~G~ 67 (126)
..||+++......+ .+.+.|++.|.+++.+.+++...+. .+.+ ..+|.|+++-+
T Consensus 141 g~~vLi~rg~~~r~-----------~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 202 (269)
T 3re1_A 141 GSRVLIMRGNEGRE-----------LLAEQLRERGVGVDYLPLYRRYLPQHAPGTLLQRVEVERLNGLVVSSG 202 (269)
T ss_dssp SCEEEEEECSSCCC-----------HHHHHHHHTTCEEEEEECEEEECCCCCTTTTHHHHHHTTCCEEECSSH
T ss_pred CCEEEEEccCccHH-----------HHHHHHHHCCCEEEEEeEEEEECCCCCHHHHHHHHHcCCCCEEEEcCH
Confidence 36899987766543 3677888999998877666432111 1111 36888888743
No 232
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=49.09 E-value=73 Score=26.26 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=46.1
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc-hHH-----
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC-FGH----- 102 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC-~G~----- 102 (126)
+.+.|.+.|++++++++. +++++|+.||+|.-..-. + .+.+.|++.++.+--++.-+ -|.
T Consensus 430 ~y~aL~~~gi~vD~v~~~-------~dL~~Yklvv~P~~~~~~-~------~~~~~L~~yV~~GG~lv~t~~sG~~de~~ 495 (675)
T 3tty_A 430 YYDALYKQNIQTDMISVE-------EDLSKYKVVIAPVMYMVK-P------GFAERVERFVAQGGTFVTTFFSGIVNEND 495 (675)
T ss_dssp HHHHHHTTTCCEEEECTT-------SCCTTCSEEEETTCCBCC-T------THHHHHHHHHHTTCEEEEETTCSCBCTTS
T ss_pred HHHHHHHcCceEEEecCc-------CCcccCCEEEEeccEecC-H------HHHHHHHHHHhcCCEEEEEccCCcCCCCC
Confidence 346777899999998743 257899999999775322 2 23444566666655444333 332
Q ss_pred ------H--HHHHHhCCccc
Q 033165 103 ------Q--VRAITVFSSHI 114 (126)
Q Consensus 103 ------Q--~la~~~Gg~v~ 114 (126)
+ .|...+|.++.
T Consensus 496 ~~~~~~~pg~L~~l~Gv~v~ 515 (675)
T 3tty_A 496 LVTLGGYPGELRNVMGIWAE 515 (675)
T ss_dssp CBCCSSBTGGGHHHHTEEEE
T ss_pred cccCCCCCcchHHhcCceEE
Confidence 1 47788888765
No 233
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=48.69 E-value=52 Score=23.54 Aligned_cols=80 Identities=10% Similarity=0.085 Sum_probs=42.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GETWDVFHVARGEFPDD-----DD--FGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~~~~~~~~ 74 (126)
..+|+|+... ..+.. ..+..-+.+.+++. |.++.+.....+ +.. +. -..+||||+.+...
T Consensus 6 ~~~Igvi~~~-~~~~~----~~~~~gi~~~a~~~~g~~l~i~~~~~~--~~~~~~~i~~l~~~~vdgiIi~~~~~----- 73 (325)
T 2x7x_A 6 HFRIGVAQCS-DDSWR----HKMNDEILREAMFYNGVSVEIRSAGDD--NSKQAEDVHYFMDEGVDLLIISANEA----- 73 (325)
T ss_dssp CCEEEEEESC-CSHHH----HHHHHHHHHHHTTSSSCEEEEEECTTC--HHHHHHHHHHHHHTTCSEEEECCSSH-----
T ss_pred CeEEEEEecC-CCHHH----HHHHHHHHHHHHHcCCcEEEEeCCCCC--HHHHHHHHHHHHHcCCCEEEEeCCCH-----
Confidence 3578998766 43321 11223344556666 888777653211 100 01 15799999985421
Q ss_pred chHHHHHHHHHHHHHhcCCcEEEE
Q 033165 75 DVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 75 ~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
....+.++.+.+.++|++-+
T Consensus 74 ----~~~~~~~~~~~~~~iPvV~~ 93 (325)
T 2x7x_A 74 ----APMTPIVEEAYQKGIPVILV 93 (325)
T ss_dssp ----HHHHHHHHHHHHTTCCEEEE
T ss_pred ----HHHHHHHHHHHHCCCeEEEe
Confidence 11223344455567887654
No 234
>3ouz_A Biotin carboxylase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta fold, cytosol, LIG; HET: MSE ADP SRT TLA; 1.90A {Campylobacter jejuni subsp} PDB: 3ouu_A*
Probab=47.97 E-value=22 Score=27.21 Aligned_cols=34 Identities=18% Similarity=-0.012 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
|+++||+|+..+. ....+.+.+++.|.++..+..
T Consensus 4 m~~~kiLI~g~g~-----------~a~~i~~aa~~~G~~~v~v~~ 37 (446)
T 3ouz_A 4 MEIKSILIANRGE-----------IALRALRTIKEMGKKAICVYS 37 (446)
T ss_dssp TCCCEEEECCCHH-----------HHHHHHHHHHHTTCEEEEEEE
T ss_pred cccceEEEECCCH-----------HHHHHHHHHHHcCCEEEEEEc
Confidence 7788999975322 223577888899998877653
No 235
>3lwz_A 3-dehydroquinate dehydratase; AROQ, IDP90771, amino- acid biosynthesis, aromatic amino acid biosynthesis, lyase, structural genomics; 1.65A {Yersinia pestis}
Probab=47.47 E-value=49 Score=22.38 Aligned_cols=69 Identities=14% Similarity=0.054 Sum_probs=32.1
Q ss_pred CCCC-eEEEEEcCCCchH---HHHhhCC--HHH---HHHHHHhhCCCeEEEEEccC-CCCCC--CCCCCCcCEEEEcCCC
Q 033165 1 MGGK-KFAVLLCAEDSEY---VKKKYGG--YFG---VFVRMLAEEGETWDVFHVAR-GEFPD--DDDFGSYDGYVITGSC 68 (126)
Q Consensus 1 M~~~-ki~Il~~~~~~~~---~~~~~~~--~~~---~~~~~l~~~g~~~~~~~~~~-~~~p~--~~~~~~~d~iii~G~~ 68 (126)
|++| ||+||.--.-+-. --+-||+ +.+ .+.+...+.|.+++.+.-.. +++-+ .+..+++|+|||=.|.
T Consensus 4 m~~m~~IlvlNGPNLNlLG~REP~iYG~~Tl~di~~~l~~~a~~~g~~~~~~QSN~EgeLId~Ih~a~~~~dgiiINpgA 83 (153)
T 3lwz_A 4 MSDKFHILLLNGPNLNLLGTREPEKYGYTTLAEIVSQLEIQAQGMDVALSHLQSNAEHALIDSIHQARGNTDFILINPAA 83 (153)
T ss_dssp ---CEEEEEEECTTGGGTTTSSHHHHCCCCHHHHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHHTTTCSEEEEECGG
T ss_pred ccccCeEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCceEEEcccc
Confidence 6644 8888754221110 0122442 333 44444556788888776321 11100 0012569999996554
Q ss_pred C
Q 033165 69 N 69 (126)
Q Consensus 69 ~ 69 (126)
.
T Consensus 84 ~ 84 (153)
T 3lwz_A 84 F 84 (153)
T ss_dssp G
T ss_pred c
Confidence 3
No 236
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}
Probab=47.17 E-value=20 Score=26.00 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=30.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCC--------CC-CCCCCCcCEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEF--------PD-DDDFGSYDGYVIT 65 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--------p~-~~~~~~~d~iii~ 65 (126)
|..|||+|+..+... ..+.+.|.+.|.++.+......++ +. .+.+.++|+++++
T Consensus 3 ~~~m~i~v~~~~~~~-----------~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 65 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQ-----------LEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLP 65 (293)
T ss_dssp CTTCEEEEECBCHHH-----------HHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECC
T ss_pred ccCcEEEEECCCHHH-----------HHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEec
Confidence 567899998554321 123456677888877654321111 00 1245678998875
No 237
>1yob_A Flavodoxin 2, flavodoxin II; alpha-beta fold, non- covalently bound FMN, electron transport; HET: FMN; 2.25A {Azotobacter vinelandii} SCOP: c.23.5.1
Probab=46.93 E-value=9.3 Score=25.64 Aligned_cols=51 Identities=14% Similarity=0.228 Sum_probs=28.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-C--CCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-E--GETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~--g~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
+|++|+.....- .+..+.+.+.+ . +.+++++++.+.+ .+++.+||.||+.-
T Consensus 1 ~kilI~Y~S~tG---------nT~~iA~~ia~~l~~~~~v~~~~~~~~~---~~~l~~~d~iilg~ 54 (179)
T 1yob_A 1 AKIGLFFGSNTG---------KTRKVAKSIKKRFDDETMSDALNVNRVS---AEDFAQYQFLILGT 54 (179)
T ss_dssp CCEEEEECCSSS---------HHHHHHHHHHTTSCTTTBCCCEEGGGCC---HHHHHTCSEEEEEE
T ss_pred CeEEEEEECCCc---------HHHHHHHHHHHHhCCCCceEEEEhhhCC---HHHHhcCCEEEEEe
Confidence 478888765542 23445555533 2 2345666664321 12467899988853
No 238
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=46.65 E-value=71 Score=22.25 Aligned_cols=81 Identities=14% Similarity=0.029 Sum_probs=42.8
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCC---------CCCcCEEEEcCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDD---------FGSYDGYVITGSCNDAHG 73 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~---------~~~~d~iii~G~~~~~~~ 73 (126)
..+|+++..+..++.. ..+..-+.+.+++.|.++.++....+. ..... -.++||||+.+...+
T Consensus 8 ~~~Ig~i~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--- 79 (290)
T 2rgy_A 8 LGIIGLFVPTFFGSYY----GTILKQTDLELRAVHRHVVVATGCGES-TPREQALEAVRFLIGRDCDGVVVISHDLH--- 79 (290)
T ss_dssp CCEEEEECSCSCSHHH----HHHHHHHHHHHHHTTCEEEEECCCSSS-CHHHHHHHHHHHHHHTTCSEEEECCSSSC---
T ss_pred CCeEEEEeCCCCCchH----HHHHHHHHHHHHHCCCEEEEEeCCCch-hhhhhHHHHHHHHHhcCccEEEEecCCCC---
Confidence 3578888765544321 123334556667789888766532211 00001 147999999875321
Q ss_pred CchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 74 NDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 74 ~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
. . .++.+.+.++|+.-+.
T Consensus 80 -~----~---~~~~l~~~~iPvV~~~ 97 (290)
T 2rgy_A 80 -D----E---DLDELHRMHPKMVFLN 97 (290)
T ss_dssp -H----H---HHHHHHHHCSSEEEES
T ss_pred -H----H---HHHHHhhcCCCEEEEc
Confidence 1 1 1223334578887653
No 239
>1yt5_A Inorganic polyphosphate/ATP-NAD kinase; domain 1: alpha/beta domain2: beta sandwich, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima}
Probab=46.29 E-value=10 Score=27.37 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=24.8
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
+++|.+|..||- ..+.+..+.+.. ++|++||=.|
T Consensus 40 ~~~D~vv~~GGD----------GTll~~a~~~~~-~~PilGIn~G 73 (258)
T 1yt5_A 40 VTADLIVVVGGD----------GTVLKAAKKAAD-GTPMVGFKAG 73 (258)
T ss_dssp BCCSEEEEEECH----------HHHHHHHTTBCT-TCEEEEEESS
T ss_pred CCCCEEEEEeCc----------HHHHHHHHHhCC-CCCEEEEECC
Confidence 579999999992 234455555555 8999999666
No 240
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=46.25 E-value=53 Score=22.99 Aligned_cols=53 Identities=19% Similarity=0.287 Sum_probs=34.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC--CC------CCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD--DD------FGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~--~~------~~~~d~iii~G 66 (126)
.+||+++......+ .+.+.|++.|.+++.+.+++...+.. +. ...+|.|+++-
T Consensus 133 ~~~vL~~rg~~~r~-----------~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~~l~~~~~d~v~ftS 193 (254)
T 4es6_A 133 DPKVLIMRGEGGRE-----------FLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSS 193 (254)
T ss_dssp SCEEEEEECSSCCC-----------HHHHHHHHTTCEEEEEECEEEECCCCCTTHHHHHHHHTTCCEEECCS
T ss_pred CCEEEEEcCCccHH-----------HHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHHHHHHhCCCCEEEEcC
Confidence 46899888766544 36678889999988777764322221 11 13678888763
No 241
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=46.02 E-value=55 Score=22.58 Aligned_cols=90 Identities=11% Similarity=0.014 Sum_probs=46.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc-CCCCCCCCCchHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT-GSCNDAHGNDVWICKL 81 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~-G~~~~~~~~~~~~~~~ 81 (126)
..||.++-++...... ..+...|...|..+..+............+..-|.+|+. -+.. . .+.
T Consensus 59 a~~I~i~G~G~S~~~A--------~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~DlvI~iS~SG~-----t---~~~ 122 (220)
T 3etn_A 59 KGKLVTSGMGKAGQIA--------MNIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGK-----T---REI 122 (220)
T ss_dssp CCCEEEECSHHHHHHH--------HHHHHHHHHTTCCEEECCTTGGGBTGGGGCCTTCEEEEECSSSC-----C---HHH
T ss_pred CCEEEEEEecHHHHHH--------HHHHHHHHhcCCcEEEeCCHHHHHhhhccCCCCCEEEEEcCCCC-----C---HHH
Confidence 3566666555443221 124555667787766654221000001124445555553 3321 1 345
Q ss_pred HHHHHHHHh--cCCcEEEEch-HHHHHHHH
Q 033165 82 IALLKQLDS--LRKKVLGICF-GHQVRAIT 108 (126)
Q Consensus 82 ~~~i~~~~~--~~~PvlGIC~-G~Q~la~~ 108 (126)
.+.++.+.+ ++.|+++|+- ..--|++.
T Consensus 123 i~~~~~ak~~~~Ga~vI~IT~~~~s~La~~ 152 (220)
T 3etn_A 123 VELTQLAHNLNPGLKFIVITGNPDSPLASE 152 (220)
T ss_dssp HHHHHHHHHHCTTCEEEEEESCTTSHHHHH
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCChhHHh
Confidence 566777777 8999999983 33345553
No 242
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=45.98 E-value=19 Score=24.50 Aligned_cols=56 Identities=5% Similarity=0.004 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CC-CCCCCCCcCEEEEc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FP-DDDDFGSYDGYVIT 65 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p-~~~~~~~~d~iii~ 65 (126)
|||+||...+..+ +|++..+.....+...++++++++++. +. ..+.+..+|+||+.
T Consensus 1 MkiLii~ghP~~~------~S~~~~~l~~~~~~~~~v~v~dL~~~~D~~~~~~~l~~aD~iV~~ 58 (177)
T 3ha2_A 1 MQTLIIVAHPELA------RSNTQPFFKAAIENFSNVTWHPLVADFNVEQEQSLLLQNDRIILE 58 (177)
T ss_dssp CCEEEEECCTTTT------TCSSHHHHHHHHTTCTTEEEEECCTTCCHHHHHHHHHTCSEEEEE
T ss_pred CeEEEEEcCCCcc------cCHHHHHHHHHHhcCCCEEEEECCCcccHHHHHHHHHhCCEEEEE
Confidence 4899998877622 244444443333334678888887521 00 01245689999885
No 243
>3p9z_A Uroporphyrinogen III cosynthase (HEMD); MCSG, PSI2, structural genomics, protein structure initiativ midwest center for structural genomics; HET: MSE; 2.10A {Helicobacter pylori}
Probab=45.95 E-value=39 Score=23.52 Aligned_cols=52 Identities=15% Similarity=0.045 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-------CCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-------DFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-------~~~~~d~iii~ 65 (126)
.+||+++......+. +.+.|++.|.+++.+.+++...+... ....+|.|+++
T Consensus 110 ~~~vL~~rg~~~~~~-----------L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~~l~~~~~d~v~ft 168 (229)
T 3p9z_A 110 KKSVLYLRAKEIVSS-----------LDTILLEHGIDFKQAVVYENKLKHLTLSEQNALKPKEKSILIFT 168 (229)
T ss_dssp TCEEEEEEESSCSSC-----------HHHHHHHTTCEEEEEEEEEEEECCCCHHHHHHHSCCTTCEEEEC
T ss_pred CCEEEEECCccchHH-----------HHHHHHHCCCeEEEEEEEEeeCCCccHHHHHHHhcCCCeEEEEE
Confidence 368888887765442 66778889998876666543211110 13568888886
No 244
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=45.23 E-value=20 Score=22.00 Aligned_cols=26 Identities=23% Similarity=0.083 Sum_probs=15.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE 36 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~ 36 (126)
|+++||+|++.+... ...+.+.|+..
T Consensus 1 M~~~~iLivdd~~~~----------~~~l~~~l~~~ 26 (140)
T 3n53_A 1 MSLKKILIIDQQDFS----------RIELKNFLDSE 26 (140)
T ss_dssp --CCEEEEECSCHHH----------HHHHHHHHTTT
T ss_pred CCCCEEEEEeCCHHH----------HHHHHHHHHhc
Confidence 889999999654432 23466666554
No 245
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=44.97 E-value=34 Score=23.61 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----C--CCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----D--DFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~--~~~~~d~iii~G~ 67 (126)
..+|+++..+..++.. ..+..-+.+.+++.|.++.++....+ +.. + .-.++||+|+.+.
T Consensus 3 s~~Ig~i~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgii~~~~ 68 (275)
T 3d8u_A 3 AYSIALIIPSLFEKAC----AHFLPSFQQALNKAGYQLLLGYSDYS--IEQEEKLLSTFLESRPAGVVLFGS 68 (275)
T ss_dssp -CEEEEEESCSSCHHH----HHHHHHHHHHHHHTSCEECCEECTTC--HHHHHHHHHHHHTSCCCCEEEESS
T ss_pred ceEEEEEeCCCccccH----HHHHHHHHHHHHHCCCEEEEEcCCCC--HHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4678888876554321 12333455667778888776653211 100 0 1157999999875
No 246
>3d7n_A Flavodoxin, WRBA-like protein; structural genomics, PSI, MCS protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens}
Probab=44.91 E-value=15 Score=24.93 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccC-CCCCC--CCCCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVAR-GEFPD--DDDFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~-~~~p~--~~~~~~~d~iii~ 65 (126)
|+||+|+..... ..+..+.+.+.+ .+. +.+.+.. ++.+. .+++.++|+||+.
T Consensus 6 ~~kiliiy~S~~---------GnT~~lA~~ia~~l~~--~~~~v~~~~~~~~~~~~~l~~~D~ii~g 61 (193)
T 3d7n_A 6 SSNTVVVYHSGY---------GHTHRMAEAVAEGAEA--TLHAIDAEGNLSEDGWAALDAADAIIFG 61 (193)
T ss_dssp CCCEEEEECCSS---------SHHHHHHHHHHHHHTC--EEEECCTTSCCCHHHHHHHHHCSEEEEE
T ss_pred CCEEEEEEECCC---------hHHHHHHHHHHHHhhh--cceEeeecCCCCHhHHHHHHHCCEEEEE
Confidence 579999987753 234445555432 222 3344432 12221 1246789999886
No 247
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=44.53 E-value=43 Score=21.99 Aligned_cols=88 Identities=16% Similarity=0.093 Sum_probs=44.2
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEE-cCCCCCCCCCchHHHHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI-TGSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii-~G~~~~~~~~~~~~~~~~~ 83 (126)
||.++-.+...... ..+...|...|..+..+............+..-|.+|+ +-+..+ ....+
T Consensus 51 ~I~i~G~G~S~~~a--------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sG~t--------~~~~~ 114 (183)
T 2xhz_A 51 KVVVMGMGASGHIG--------RKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGES--------SEITA 114 (183)
T ss_dssp CEEEEECHHHHHHH--------HHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSSSCC--------HHHHH
T ss_pred eEEEEeecHHHHHH--------HHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCCCCC--------HHHHH
Confidence 66666555432211 22445555667766554321100000113445565554 333211 23556
Q ss_pred HHHHHHhcCCcEEEEch-HHHHHHHH
Q 033165 84 LLKQLDSLRKKVLGICF-GHQVRAIT 108 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~-G~Q~la~~ 108 (126)
.++.+.+++.|+++|+- ..--|++.
T Consensus 115 ~~~~ak~~g~~vi~IT~~~~s~la~~ 140 (183)
T 2xhz_A 115 LIPVLKRLHVPLICITGRPESSMARA 140 (183)
T ss_dssp HHHHHHTTTCCEEEEESCTTSHHHHH
T ss_pred HHHHHHHCCCCEEEEECCCCChhHHh
Confidence 67777778999999985 33345553
No 248
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=44.43 E-value=53 Score=23.85 Aligned_cols=78 Identities=12% Similarity=0.091 Sum_probs=44.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCCCCCCCCCch
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~~~~~~~~~~ 76 (126)
..|+++..+..++.. ..+..-+.+.+++.|.++.+.....+ +.. +. -..+||||+.+...+ .
T Consensus 71 ~~Igvi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdGiI~~~~~~~----~- 139 (355)
T 3e3m_A 71 GFVGLLLPSLNNLHF----AQTAQSLTDVLEQGGLQLLLGYTAYS--PEREEQLVETMLRRRPEAMVLSYDGHT----E- 139 (355)
T ss_dssp CEEEEEESCSBCHHH----HHHHHHHHHHHHHTTCEEEEEECTTC--HHHHHHHHHHHHHTCCSEEEEECSCCC----H-
T ss_pred CEEEEEeCCCCchHH----HHHHHHHHHHHHHCCCEEEEEeCCCC--hHHHHHHHHHHHhCCCCEEEEeCCCCC----H-
Confidence 468888776655422 22334455667778998877764321 100 00 147999999865321 1
Q ss_pred HHHHHHHHHHHHHhcCCcEEEE
Q 033165 77 WICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGI 98 (126)
+.++.+.+.++|+.-+
T Consensus 140 ------~~~~~l~~~~iPvV~i 155 (355)
T 3e3m_A 140 ------QTIRLLQRASIPIVEI 155 (355)
T ss_dssp ------HHHHHHHHCCSCEEEE
T ss_pred ------HHHHHHHhCCCCEEEE
Confidence 1233444568888765
No 249
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=44.32 E-value=72 Score=24.56 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=43.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC----CCCCCcCEEEEcCCCCCCCCCchHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD----DDFGSYDGYVITGSCNDAHGNDVWIC 79 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~----~~~~~~d~iii~G~~~~~~~~~~~~~ 79 (126)
.+|+|+....-- +++. -...+.+-+.+.|.+..++++.+.+.+.. +++.++|+|++.-...+ .+-.+-+.
T Consensus 266 ~~v~I~Y~S~yG-nTe~----mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~-~~~~p~~~ 339 (410)
T 4dik_A 266 GKVTVIYDSMYG-FVEN----VMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE-AEIHPLMR 339 (410)
T ss_dssp TEEEEEEECSSS-HHHH----HHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTT-SSSCHHHH
T ss_pred cceeeEEecccC-hHHH----HHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcC-CcCCHHHH
Confidence 467777654432 1111 12235555667898888777653221111 24568999998433332 12224344
Q ss_pred HHHHHHHHHHhcCCcEE
Q 033165 80 KLIALLKQLDSLRKKVL 96 (126)
Q Consensus 80 ~~~~~i~~~~~~~~Pvl 96 (126)
.+...+....-.++++.
T Consensus 340 ~~l~~l~~~~~~~K~~~ 356 (410)
T 4dik_A 340 FTLLEIIDKANYEKPVL 356 (410)
T ss_dssp HHHHHHHHHCCCCCEEE
T ss_pred HHHHHHHhcccCCCEEE
Confidence 44444444332456654
No 250
>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A
Probab=44.20 E-value=9.4 Score=26.61 Aligned_cols=49 Identities=20% Similarity=0.245 Sum_probs=29.6
Q ss_pred CcCEEEEcCCCCCCCCCc-----hHHHHHHHHHHHHHhcCCcEEEEchHHHHHH
Q 033165 58 SYDGYVITGSCNDAHGND-----VWICKLIALLKQLDSLRKKVLGICFGHQVRA 106 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~-----~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la 106 (126)
..|.||+||-..+....- .|..+..+..+.......+.+|+|+-.|++.
T Consensus 128 ~~DlvlVP~vaFD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~igla~~~Q~~~ 181 (203)
T 3hy3_A 128 GLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVKPYTLALAFKEQICL 181 (203)
T ss_dssp CCSEEEECCSEECTTCCEECSSSCHHHHHHHHHTTTCSSCCEEEEECCGGGBCS
T ss_pred CCCEEEeCCeEECCCCceecCCCchHHHHHHHhhhhcCCCCeEEEEecHHhccC
Confidence 589999999865443221 4666654332211112356899999999763
No 251
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=44.17 E-value=33 Score=25.07 Aligned_cols=39 Identities=15% Similarity=0.014 Sum_probs=25.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
|.|+||+++-... ...+.. .-.+.+.|.+.|.+++++..
T Consensus 2 m~M~~il~~~~~~-~Ghv~~-----~~~La~~L~~~GheV~v~~~ 40 (402)
T 3ia7_A 2 MRQRHILFANVQG-HGHVYP-----SLGLVSELARRGHRITYVTT 40 (402)
T ss_dssp CCCCEEEEECCSS-HHHHHH-----HHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCEEEEEeCCC-Cccccc-----HHHHHHHHHhCCCEEEEEcC
Confidence 8888999886542 222211 12356778888999998864
No 252
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=44.10 E-value=13 Score=26.31 Aligned_cols=66 Identities=9% Similarity=-0.064 Sum_probs=32.4
Q ss_pred CCeEEEEEcCCCchHHHHh-hCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CC--CCCCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKK-YGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DD--DFGSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~--~~~~~d~iii~G~~ 68 (126)
+.+|+|+-.....+...+. |..+..-+.+.+++.|.++.++....+.-.. .+ .-..+||||+.+..
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~ 78 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSK 78 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCC
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcc
Confidence 3578888754332221111 1122333445666778877665432110000 00 11579999998653
No 253
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=43.82 E-value=42 Score=23.47 Aligned_cols=60 Identities=7% Similarity=0.025 Sum_probs=33.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGSC 68 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~~ 68 (126)
.+|+++..+..++.. .....-+.+.+++.|.++.++....+ ... .+. -..+||||+.+..
T Consensus 21 ~~Ig~i~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgii~~~~~ 86 (293)
T 2iks_A 21 RSIGLVIPDLENTSY----TRIANYLERQARQRGYQLLIACSEDQ-PDNEMRCIEHLLQRQVDAIIVSTSL 86 (293)
T ss_dssp CEEEEEESCSCSHHH----HHHHHHHHHHHHHTTCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred cEEEEEeCCCcCcHH----HHHHHHHHHHHHHCCCEEEEEcCCCC-HHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 578888766554321 12333455666778988877653211 000 001 1479999998753
No 254
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=43.82 E-value=34 Score=20.43 Aligned_cols=33 Identities=15% Similarity=0.047 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|...||+|++.+... ...+...|+..|.++...
T Consensus 1 m~~~~ilivdd~~~~----------~~~l~~~l~~~~~~v~~~ 33 (126)
T 1dbw_A 1 MQDYTVHIVDDEEPV----------RKSLAFMLTMNGFAVKMH 33 (126)
T ss_dssp CCCCEEEEEESSHHH----------HHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEEcCCHHH----------HHHHHHHHHhCCcEEEEe
Confidence 778899999765432 234667777778766543
No 255
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=43.63 E-value=24 Score=21.56 Aligned_cols=84 Identities=13% Similarity=0.103 Sum_probs=40.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
++||+|++.+.. +...+...|++.|.++..+.-....+... .-..+|.||+-=. ....+. ..+.
T Consensus 6 ~~~iLivdd~~~----------~~~~l~~~l~~~g~~v~~~~~~~~a~~~l-~~~~~dlvi~d~~-l~~~~g----~~~~ 69 (140)
T 3grc_A 6 RPRILICEDDPD----------IARLLNLMLEKGGFDSDMVHSAAQALEQV-ARRPYAAMTVDLN-LPDQDG----VSLI 69 (140)
T ss_dssp CSEEEEECSCHH----------HHHHHHHHHHHTTCEEEEECSHHHHHHHH-HHSCCSEEEECSC-CSSSCH----HHHH
T ss_pred CCCEEEEcCCHH----------HHHHHHHHHHHCCCeEEEECCHHHHHHHH-HhCCCCEEEEeCC-CCCCCH----HHHH
Confidence 478999865443 22346778888887765443111000000 0135787777321 111111 1233
Q ss_pred HHHHHH-HhcCCcEEEEchHH
Q 033165 83 ALLKQL-DSLRKKVLGICFGH 102 (126)
Q Consensus 83 ~~i~~~-~~~~~PvlGIC~G~ 102 (126)
+.+++. .....|++-+.--.
T Consensus 70 ~~l~~~~~~~~~~ii~~s~~~ 90 (140)
T 3grc_A 70 RALRRDSRTRDLAIVVVSANA 90 (140)
T ss_dssp HHHHTSGGGTTCEEEEECTTH
T ss_pred HHHHhCcccCCCCEEEEecCC
Confidence 334431 12478998877543
No 256
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=43.62 E-value=40 Score=24.33 Aligned_cols=80 Identities=14% Similarity=0.011 Sum_probs=42.9
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CC--CCCCcCEEEEcCCCCCCCCCchHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DD--DFGSYDGYVITGSCNDAHGNDVWI 78 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~--~~~~~d~iii~G~~~~~~~~~~~~ 78 (126)
.+|+++..+..++.. ..+..-+.+.+++.|.++.++....+.-.. .+ .-..+||||+.+...+ + +
T Consensus 63 ~~Igvi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~--~--~-- 132 (339)
T 3h5o_A 63 RTVLVLIPSLANTVF----LETLTGIETVLDAAGYQMLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHA--E--P-- 132 (339)
T ss_dssp CEEEEEESCSTTCTT----HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCC--T--T--
T ss_pred CEEEEEeCCCCCHHH----HHHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCC--H--H--
Confidence 468888766544321 123334556677789888876643210000 00 1157999999875322 1 1
Q ss_pred HHHHHHHHHHHhcCCcEEEE
Q 033165 79 CKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGI 98 (126)
.++.+.+.++|+.-+
T Consensus 133 -----~~~~l~~~~iPvV~~ 147 (339)
T 3h5o_A 133 -----FERILSQHALPVVYM 147 (339)
T ss_dssp -----HHHHHHHTTCCEEEE
T ss_pred -----HHHHHhcCCCCEEEE
Confidence 122334467887655
No 257
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=43.43 E-value=32 Score=23.19 Aligned_cols=80 Identities=11% Similarity=0.073 Sum_probs=41.4
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc-CCCCCCCCCchHHHHHHH
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT-GSCNDAHGNDVWICKLIA 83 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~-G~~~~~~~~~~~~~~~~~ 83 (126)
||.++-++...... ..+...|.+.|..+..+............+..-|.+|+. .+.. . .+..+
T Consensus 47 ~I~i~G~G~S~~~A--------~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~sG~-----t---~~~~~ 110 (201)
T 3fxa_A 47 KIVVAGCGTSGVAA--------KKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGGN-----T---GELLN 110 (201)
T ss_dssp CEEEECCTHHHHHH--------HHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSSSC-----C---HHHHT
T ss_pred cEEEEEecHHHHHH--------HHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCCCC-----C---HHHHH
Confidence 66666665543222 124555666787776654321100001123444555543 3321 1 23445
Q ss_pred HHHHHHhcCCcEEEEch
Q 033165 84 LLKQLDSLRKKVLGICF 100 (126)
Q Consensus 84 ~i~~~~~~~~PvlGIC~ 100 (126)
.++.+.+.+.|+++|+-
T Consensus 111 ~~~~ak~~g~~vi~IT~ 127 (201)
T 3fxa_A 111 LIPACKTKGSTLIGVTE 127 (201)
T ss_dssp THHHHHHHTCEEEEEES
T ss_pred HHHHHHHcCCeEEEEEC
Confidence 56666677999999984
No 258
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=43.13 E-value=23 Score=21.76 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=19.3
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
..+||+|++-+.. +...+.+.|+..|.++..+
T Consensus 4 ~~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 35 (140)
T 3h5i_A 4 KDKKILIVEDSKF----------QAKTIANILNKYGYTVEIA 35 (140)
T ss_dssp --CEEEEECSCHH----------HHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEeCCHH----------HHHHHHHHHHHcCCEEEEe
Confidence 3468888865442 2335777888888776543
No 259
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=42.92 E-value=81 Score=21.80 Aligned_cols=61 Identities=11% Similarity=0.142 Sum_probs=34.2
Q ss_pred CCeEEEEEc-CCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC---CCC--CCCCcCEEEEcCC
Q 033165 3 GKKFAVLLC-AEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP---DDD--DFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p---~~~--~~~~~d~iii~G~ 67 (126)
..+|+|+.. +...+.. ..+..-+.+.+++.|.++.++....+.-. ..+ .-..+||||+.+.
T Consensus 11 ~~~Igvi~~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 77 (289)
T 3g85_A 11 KPTIALYWSSDISVNII----SRFLRGLQSKLAKQNYNYNVVICPYKTDCLHLEKGISKENSFDAAIIANI 77 (289)
T ss_dssp CCEEEEEEETTSCGGGH----HHHHHHHHHHHHHTTTCSEEEEEEECTTCGGGCGGGSTTTCCSEEEESSC
T ss_pred CceEEEEeccccchHHH----HHHHHHHHHHHHHcCCeEEEEecCCCchhHHHHHHHHhccCCCEEEEecC
Confidence 367898876 3443321 22344455667778988877654321100 001 1257999999865
No 260
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=42.52 E-value=26 Score=20.82 Aligned_cols=31 Identities=13% Similarity=0.011 Sum_probs=18.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWD 41 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 41 (126)
|...||+|++.+.. +...+.+.|+..|.++.
T Consensus 1 mm~~~ilivdd~~~----------~~~~l~~~l~~~~~~v~ 31 (124)
T 1srr_A 1 MMNEKILIVDDQSG----------IRILLNEVFNKEGYQTF 31 (124)
T ss_dssp --CCEEEEECSCHH----------HHHHHHHHHHTTTCEEE
T ss_pred CCCceEEEEeCCHH----------HHHHHHHHHHHCCcEEE
Confidence 65678999865432 22346777877777654
No 261
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=42.46 E-value=51 Score=23.80 Aligned_cols=78 Identities=17% Similarity=0.043 Sum_probs=42.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----C--CCCCcCEEEEcCCCCCCCCCch
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----D--DFGSYDGYVITGSCNDAHGNDV 76 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~--~~~~~d~iii~G~~~~~~~~~~ 76 (126)
.+|+++..+..++.. ..+..-+.+.+++.|.++.+.....+ +.. + .-..+||||+.+... +.
T Consensus 69 ~~Ig~i~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~i~~l~~~~vdGiIi~~~~~----~~- 137 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVF----PEVLTGINQVLEDTELQPVVGVTDYL--PEKEEKVLYEMLSWRPSGVIIAGLEH----SE- 137 (344)
T ss_dssp SEEEEEESCSSSSSH----HHHHHHHHHHHTSSSSEEEEEECTTC--HHHHHHHHHHHHTTCCSEEEEECSCC----CH-
T ss_pred CEEEEEeCCCCcHHH----HHHHHHHHHHHHHCCCEEEEEeCCCC--HHHHHHHHHHHHhCCCCEEEEECCCC----CH-
Confidence 578888766554321 12233355666777888877654321 110 0 014799999986532 11
Q ss_pred HHHHHHHHHHHHHhcCCcEEEE
Q 033165 77 WICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 77 ~~~~~~~~i~~~~~~~~PvlGI 98 (126)
+.++.+.+.++|+.-+
T Consensus 138 ------~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 138 ------AARAMLDAAGIPVVEI 153 (344)
T ss_dssp ------HHHHHHHHCSSCEEEE
T ss_pred ------HHHHHHHhCCCCEEEE
Confidence 1233344568888765
No 262
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=42.34 E-value=32 Score=25.59 Aligned_cols=42 Identities=17% Similarity=0.119 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFH 44 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 44 (126)
|.++||+||--+...+.-.+-. | ...+.+.|++.|.++..+.
T Consensus 1 M~kkkv~vl~GG~S~E~evSl~-S-a~~v~~aL~~~gy~v~~i~ 42 (357)
T 4fu0_A 1 MQNKKIAVIFGGNSTEYEVSLQ-S-ASAVFENINTNKFDIIPIG 42 (357)
T ss_dssp -CCEEEEEEEECSSTTHHHHHH-H-HHHHHHHSCTTTEEEEEEE
T ss_pred CCCCEEEEEECCCccchHHHHH-H-HHHHHHHHhHhCCEEEEEE
Confidence 8999999997766554211100 0 1235577777787776554
No 263
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=42.28 E-value=70 Score=22.23 Aligned_cols=61 Identities=7% Similarity=-0.038 Sum_probs=34.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC---CCCC--CCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP---DDDD--FGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p---~~~~--~~~~d~iii~G~ 67 (126)
..+|+++..+..++.. ..+..-+.+.+++.|.++.++....+.-. ..+. -.++||||+.+.
T Consensus 8 ~~~Igvi~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~ 73 (285)
T 3c3k_A 8 TGMLLVMVSNIANPFC----AAVVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSGKMVDGVITMDA 73 (285)
T ss_dssp CCEEEEEESCTTSHHH----HHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHTTCCSEEEECCC
T ss_pred CCEEEEEeCCCCCchH----HHHHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3579999876554321 12333455666778988877654221000 0001 157999999765
No 264
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=41.99 E-value=33 Score=23.74 Aligned_cols=79 Identities=10% Similarity=-0.008 Sum_probs=42.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CCC--CCCcCEEEEcCCCCCCCCCchH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DDD--FGSYDGYVITGSCNDAHGNDVW 77 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~~--~~~~d~iii~G~~~~~~~~~~~ 77 (126)
..+|+++..+...+.. ..+..-+.+.+++.|.++.++....+.-.. .+. -..+||||+.+. + .
T Consensus 8 ~~~Ig~i~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-----~-~-- 75 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFF----TLIARGVEDVALAHGYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-----N-E-- 75 (277)
T ss_dssp --CEEEEESCTTSHHH----HHHHHHHHHHHHHTTCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-----G-H--
T ss_pred CCEEEEEECCCCCHHH----HHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-----C-h--
Confidence 3578888876554422 123344556677789988877643220000 001 157999999761 1 1
Q ss_pred HHHHHHHHH-HHHhcCCcEEEE
Q 033165 78 ICKLIALLK-QLDSLRKKVLGI 98 (126)
Q Consensus 78 ~~~~~~~i~-~~~~~~~PvlGI 98 (126)
+.++ .+.+.++|+.-+
T Consensus 76 -----~~~~~~l~~~~iPvV~~ 92 (277)
T 3e61_A 76 -----NIIENTLTDHHIPFVFI 92 (277)
T ss_dssp -----HHHHHHHHHC-CCEEEG
T ss_pred -----HHHHHHHHcCCCCEEEE
Confidence 1244 455568898654
No 265
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=41.56 E-value=29 Score=21.28 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=20.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|.+.+|+|++-+.. +...+...|+..|.++...
T Consensus 2 m~~~~iLivdd~~~----------~~~~l~~~L~~~g~~v~~~ 34 (136)
T 3t6k_A 2 MKPHTLLIVDDDDT----------VAEMLELVLRGAGYEVRRA 34 (136)
T ss_dssp -CCCEEEEECSCHH----------HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEEeCCHH----------HHHHHHHHHHHCCCEEEEe
Confidence 67789999965442 2234677888888766543
No 266
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=41.31 E-value=70 Score=22.88 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----CCC--CCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----DDD--FGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----~~~--~~~~d~iii~G~ 67 (126)
.+|+++..+..++.. ..+..-+.+.+++.|.++.++....+ +. .+. -..+||||+.+.
T Consensus 64 ~~Ig~i~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiI~~~~ 128 (332)
T 2o20_A 64 TTVGVILPTITSTYF----AAITRGVDDIASMYKYNMILANSDND--VEKEEKVLETFLSKQVDGIVYMGS 128 (332)
T ss_dssp CEEEEEESCTTCHHH----HHHHHHHHHHHHHTTCEEEEEECTTC--HHHHHHHHHHHHHTTCSEEEECSS
T ss_pred CEEEEEeCCCCCcHH----HHHHHHHHHHHHHcCCEEEEEECCCC--hHHHHHHHHHHHhCCCCEEEEeCC
Confidence 578888765544321 12333455666778988877653221 10 001 157999999875
No 267
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=41.07 E-value=24 Score=23.15 Aligned_cols=33 Identities=27% Similarity=0.297 Sum_probs=20.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|.++||+|++-+.. +...+...|+..|+++..+
T Consensus 5 m~~~~iLivdd~~~----------~~~~l~~~L~~~g~~v~~~ 37 (184)
T 3rqi_A 5 MSDKNFLVIDDNEV----------FAGTLARGLERRGYAVRQA 37 (184)
T ss_dssp --CCEEEEECSCHH----------HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEEcCCHH----------HHHHHHHHHHHCCCEEEEe
Confidence 67789999965443 2234677888878766443
No 268
>1ehi_A LMDDL2, D-alanine:D-lactate ligase; ATP-binding. grAsp motif for ATP.; HET: ADP PHY; 2.38A {Leuconostoc mesenteroides} SCOP: c.30.1.2 d.142.1.1
Probab=41.06 E-value=44 Score=25.10 Aligned_cols=44 Identities=25% Similarity=0.195 Sum_probs=27.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHH-hhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRML-AEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l-~~~g~~~~~~~~~ 46 (126)
|+++||+||--+...+.-.+-. -...+.+.| ++.|.++..+.+.
T Consensus 1 m~k~~v~vl~gG~s~E~~vSl~--s~~~v~~al~~~~g~~v~~i~~~ 45 (377)
T 1ehi_A 1 MTKKRVALIFGGNSSEHDVSKR--SAQNFYNAIEATGKYEIIVFAIA 45 (377)
T ss_dssp --CEEEEEEEECSSTTHHHHHH--HHHHHHHHHHHHSSEEEEEEEEC
T ss_pred CCCcEEEEEeCCCCCCcceeHH--HHHHHHHHhCcccCcEEEEEEEc
Confidence 8888999998776654211100 123566788 8889888877654
No 269
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=40.68 E-value=28 Score=21.56 Aligned_cols=36 Identities=6% Similarity=0.099 Sum_probs=21.1
Q ss_pred HHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 28 VFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 28 ~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
.+.+.+.+.|.++++......+++. .+.++|.|+.+
T Consensus 23 kl~~~~~~~gi~~~i~~~~~~~~~~--~~~~~D~Ii~t 58 (109)
T 2l2q_A 23 RIEKYAKSKNINATIEAIAETRLSE--VVDRFDVVLLA 58 (109)
T ss_dssp HHHHHHHHHTCSEEEEEECSTTHHH--HTTTCSEEEEC
T ss_pred HHHHHHHHCCCCeEEEEecHHHHHh--hcCCCCEEEEC
Confidence 4667787888876655443333322 24678855544
No 270
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=40.61 E-value=38 Score=25.33 Aligned_cols=44 Identities=7% Similarity=0.014 Sum_probs=27.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|.++||+||--+...+.-.+-. -...+.+.|.+.+.++..+.+.
T Consensus 1 m~~~~v~vl~GG~S~E~evSl~--S~~~v~~al~~~~~~v~~i~i~ 44 (364)
T 3i12_A 1 MAKLRVGIVFGGKSAEHEVSLQ--SAKNIVDAIDKTRFDVVLLGID 44 (364)
T ss_dssp -CCEEEEEEEECSSTTHHHHHH--HHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCccEEEEEeccCCCCccchHH--HHHHHHHHHhhcCCeEEEEEEC
Confidence 8889999999887765322210 1234557777778777766654
No 271
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=40.25 E-value=1.1e+02 Score=22.45 Aligned_cols=33 Identities=12% Similarity=0.023 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
++||.|+-.+..-- .-+.++|.+.|.++..++.
T Consensus 4 ~~~i~~iGiGg~Gm----------s~~A~~L~~~G~~V~~~D~ 36 (326)
T 3eag_A 4 MKHIHIIGIGGTFM----------GGLAAIAKEAGFEVSGCDA 36 (326)
T ss_dssp CCEEEEESCCSHHH----------HHHHHHHHHTTCEEEEEES
T ss_pred CcEEEEEEECHHHH----------HHHHHHHHhCCCEEEEEcC
Confidence 56787776654311 1255677778888777764
No 272
>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*
Probab=40.04 E-value=37 Score=28.09 Aligned_cols=58 Identities=16% Similarity=0.112 Sum_probs=36.6
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHh-hCCCeEEEEEccCCCCCCCCCCCCc-CEEEEcCC
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLA-EEGETWDVFHVARGEFPDDDDFGSY-DGYVITGS 67 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~-~~g~~~~~~~~~~~~~p~~~~~~~~-d~iii~G~ 67 (126)
.|+|++|+.....- +++ .+...+.+.++ +.|.+++++++.+.+ .+++.++ +.+|+.-+
T Consensus 48 ~~~ki~IlY~S~tG-nte----~~A~~ia~~l~~~~g~~v~v~~l~~~~---~~~l~~~~~~vi~~~s 107 (682)
T 2bpo_A 48 NNKNYLVLYASQTG-TAE----GFAKAFSKELVAKFNLNVMCADVENYD---FESLNDVPVIVSIFIS 107 (682)
T ss_dssp TTCSEEEEEECSSS-HHH----HHHHHHHHHHHHHHCCCEEEEETTSSC---GGGGGGCCSEEEEEEE
T ss_pred CCCeEEEEEECCch-HHH----HHHHHHHHHhHHhcCCceEEeehHHCC---HHHHhhcCCeEEEEeC
Confidence 36789888765442 222 25556777776 678888888875322 1246678 88888543
No 273
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=40.03 E-value=38 Score=24.32 Aligned_cols=81 Identities=6% Similarity=0.005 Sum_probs=43.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CCC--CC--cCEEEEcCCCCCCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DDF--GS--YDGYVITGSCNDAHG 73 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~~--~~--~d~iii~G~~~~~~~ 73 (126)
..+|+++..+..++... .+..-+.+.+++.|.++.++....+ +.. +.+ .+ +||||+.+...
T Consensus 5 s~~Igvi~~~~~~~~~~----~~~~gi~~~a~~~g~~l~~~~~~~~--~~~~~~~i~~l~~~~~~vdgiIi~~~~~---- 74 (332)
T 2rjo_A 5 QTTLACSFRSLTNPYYT----AFNKGAQSFAKSVGLPYVPLTTEGS--SEKGIADIRALLQKTGGNLVLNVDPNDS---- 74 (332)
T ss_dssp CCEEEEEESCTTSHHHH----HHHHHHHHHHHHHTCCEEEEECTTC--HHHHHHHHHHHHHHTTTCEEEEECCSSH----
T ss_pred ccEEEEEecCCCcHHHH----HHHHHHHHHHHHcCCEEEEecCCCC--HHHHHHHHHHHHHCCCCCCEEEEeCCCH----
Confidence 35899988765543211 2333455666777888877653211 100 011 35 99999976521
Q ss_pred CchHHHHHHHHHHHHHhcCCcEEEE
Q 033165 74 NDVWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 74 ~~~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
....+.++.+.+.++|++.+
T Consensus 75 -----~~~~~~~~~~~~~~iPvV~~ 94 (332)
T 2rjo_A 75 -----ADARVIVEACSKAGAYVTTI 94 (332)
T ss_dssp -----HHHHHHHHHHHHHTCEEEEE
T ss_pred -----HHHHHHHHHHHHCCCeEEEE
Confidence 11223344444557887655
No 274
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=40.02 E-value=40 Score=24.79 Aligned_cols=43 Identities=14% Similarity=-0.079 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
|+++||+||-.+...+.-.+-. -...+.+.|++.|.++..+.+
T Consensus 1 m~~~~v~vl~gG~s~E~~vs~~--s~~~v~~al~~~g~~v~~i~~ 43 (343)
T 1e4e_A 1 MNRIKVAILFGGCSEEHDVSVK--SAIEIAANINKEKYEPLYIGI 43 (343)
T ss_dssp -CCEEEEEEEECSSTTHHHHHH--HHHHHHHHSCTTTEEEEEEEE
T ss_pred CCCcEEEEEeCCCCCCcchhHH--HHHHHHHHhhhcCCEEEEEEE
Confidence 7888999998766543211100 022456777778887776654
No 275
>2i87_A D-alanine-D-alanine ligase; APO; 2.00A {Staphylococcus aureus subsp} PDB: 2i8c_A* 3n8d_A* 2i80_A*
Probab=39.51 E-value=27 Score=25.98 Aligned_cols=44 Identities=7% Similarity=0.106 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|+++||+||-.+...+.-.+.. -...+.+.|++.|.++..+.+.
T Consensus 1 m~~~~v~vl~gg~s~E~~vs~~--s~~~v~~al~~~g~~v~~i~~~ 44 (364)
T 2i87_A 1 MTKENICIVFGGKSAEHEVSIL--TAQNVLNAIDKDKYHVDIIYIT 44 (364)
T ss_dssp --CEEEEEEEECSSSCHHHHHH--HHHHHHHTSCTTTEEEEEEEEC
T ss_pred CCCcEEEEEECCCCccchhHHH--HHHHHHHHHhhcCCEEEEEEEc
Confidence 8889999998766543211100 0134566777778877766543
No 276
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=39.49 E-value=46 Score=21.92 Aligned_cols=82 Identities=9% Similarity=-0.061 Sum_probs=43.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC-CCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP-DDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p-~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
.||.++-++....... .+...|...|..+..+.....++. ....+..-|.+|+..-... . ....
T Consensus 40 ~~I~i~G~G~S~~~a~--------~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~iS~sG~----t---~~~~ 104 (187)
T 3sho_A 40 DHVIVVGMGFSAAVAV--------FLGHGLNSLGIRTTVLTEGGSTLTITLANLRPTDLMIGVSVWRY----L---RDTV 104 (187)
T ss_dssp SEEEEECCGGGHHHHH--------HHHHHHHHTTCCEEEECCCTHHHHHHHHTCCTTEEEEEECCSSC----C---HHHH
T ss_pred CEEEEEecCchHHHHH--------HHHHHHHhcCCCEEEecCCchhHHHHHhcCCCCCEEEEEeCCCC----C---HHHH
Confidence 5777776666433222 255566677888776652111000 0012344455554322111 1 3455
Q ss_pred HHHHHHHhcCCcEEEEch
Q 033165 83 ALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~ 100 (126)
+.++.+.+++.|+++|.-
T Consensus 105 ~~~~~ak~~g~~vi~IT~ 122 (187)
T 3sho_A 105 AALAGAAERGVPTMALTD 122 (187)
T ss_dssp HHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHCCCCEEEEeC
Confidence 667777778999999984
No 277
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=39.48 E-value=24 Score=20.78 Aligned_cols=32 Identities=25% Similarity=0.038 Sum_probs=21.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV 42 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 42 (126)
|.+++|+|++.+... ...+.+.|+..|.++..
T Consensus 1 m~~~~ilivdd~~~~----------~~~l~~~l~~~~~~v~~ 32 (124)
T 1dc7_A 1 MQRGIVWVVDDDSSI----------RWVLERALAGAGLTCTT 32 (124)
T ss_dssp CCCCCCEEECSSSSH----------HHHHHHHHTTTTCCCEE
T ss_pred CCccEEEEEeCCHHH----------HHHHHHHHHhCCcEEEE
Confidence 788899999766542 23466777777766543
No 278
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=39.24 E-value=36 Score=20.39 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
..+||+|++.+.. +...+.++|+..|.++...
T Consensus 6 ~~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 37 (130)
T 3eod_A 6 VGKQILIVEDEQV----------FRSLLDSWFSSLGATTVLA 37 (130)
T ss_dssp TTCEEEEECSCHH----------HHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEEeCCHH----------HHHHHHHHHHhCCceEEEe
Confidence 4578999965443 2235677888888776543
No 279
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=38.96 E-value=32 Score=21.07 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=20.5
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
.++||+|++.+.. ....+.+.|+..|..+.+...
T Consensus 4 ~~~~ILivdd~~~----------~~~~l~~~L~~~~~~~~v~~~ 37 (144)
T 3kht_A 4 RSKRVLVVEDNPD----------DIALIRRVLDRKDIHCQLEFV 37 (144)
T ss_dssp -CEEEEEECCCHH----------HHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEEeCCHH----------HHHHHHHHHHhcCCCeeEEEE
Confidence 3567888854432 223577888888887555443
No 280
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=38.82 E-value=35 Score=21.26 Aligned_cols=83 Identities=7% Similarity=-0.054 Sum_probs=40.5
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
|.++||+|++.+.. +...+.+.|+..|.++..+.-....+... .-..+|.||+--.-.. .+ . ..
T Consensus 5 ~~~~~iLivdd~~~----------~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-~~~~~dlvi~d~~l~~-~~-g---~~ 68 (154)
T 2rjn_A 5 YKNYTVMLVDDEQP----------ILNSLKRLIKRLGCNIITFTSPLDALEAL-KGTSVQLVISDMRMPE-MG-G---EV 68 (154)
T ss_dssp CSCCEEEEECSCHH----------HHHHHHHHHHTTTCEEEEESCHHHHHHHH-TTSCCSEEEEESSCSS-SC-H---HH
T ss_pred CCCCeEEEEcCCHH----------HHHHHHHHHHHcCCeEEEeCCHHHHHHHH-hcCCCCEEEEecCCCC-CC-H---HH
Confidence 44678999865443 22346778887787665433111000000 1135888877422111 11 1 12
Q ss_pred HHHHHHHHHhcCCcEEEEch
Q 033165 81 LIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~ 100 (126)
+.+.+++. ....|++-+.-
T Consensus 69 ~~~~l~~~-~~~~~ii~ls~ 87 (154)
T 2rjn_A 69 FLEQVAKS-YPDIERVVISG 87 (154)
T ss_dssp HHHHHHHH-CTTSEEEEEEC
T ss_pred HHHHHHHh-CCCCcEEEEec
Confidence 33334432 24688887763
No 281
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=38.73 E-value=1.3e+02 Score=23.11 Aligned_cols=32 Identities=34% Similarity=0.267 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
.+||+|+-.+..-- -..++|.+.|.++..++.
T Consensus 9 ~k~v~viG~G~sG~-----------s~A~~l~~~G~~V~~~D~ 40 (451)
T 3lk7_A 9 NKKVLVLGLARSGE-----------AAARLLAKLGAIVTVNDG 40 (451)
T ss_dssp TCEEEEECCTTTHH-----------HHHHHHHHTTCEEEEEES
T ss_pred CCEEEEEeeCHHHH-----------HHHHHHHhCCCEEEEEeC
Confidence 47899997765421 135677778888877764
No 282
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=38.47 E-value=31 Score=20.86 Aligned_cols=31 Identities=10% Similarity=-0.175 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
++||+|++.+.. +...+.+.|+..|.++..+
T Consensus 7 ~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 37 (136)
T 3hdv_A 7 RPLVLVVDDNAV----------NREALILYLKSRGIDAVGA 37 (136)
T ss_dssp CCEEEEECSCHH----------HHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEECCCHH----------HHHHHHHHHHHcCceEEEe
Confidence 578888865443 2335777888888776554
No 283
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=38.24 E-value=35 Score=20.73 Aligned_cols=32 Identities=6% Similarity=-0.128 Sum_probs=19.8
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
.++||+|++.+.. +...+.+.|+..|.++..+
T Consensus 6 ~~~~iLivdd~~~----------~~~~l~~~L~~~g~~v~~~ 37 (142)
T 3cg4_A 6 HKGDVMIVDDDAH----------VRIAVKTILSDAGFHIISA 37 (142)
T ss_dssp CCCEEEEECSCHH----------HHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEEcCCHH----------HHHHHHHHHHHCCeEEEEe
Confidence 3578888865432 2234677787778765443
No 284
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=37.85 E-value=94 Score=22.99 Aligned_cols=80 Identities=8% Similarity=0.030 Sum_probs=42.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCCCc-CEEEE-cCCCCCCCCCchHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFGSY-DGYVI-TGSCNDAHGNDVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~~~-d~iii-~G~~~~~~~~~~~~~~ 80 (126)
.||.++-++....... .+...|.. .|..+..+.......... .+..- |.+|+ +-|..+ .+
T Consensus 53 ~~I~i~G~G~S~~~a~--------~~~~~l~~~~g~~v~~~~~~~~~~~~~-~~~~~~dlvI~iS~SG~T--------~e 115 (342)
T 1j5x_A 53 DEVLFVGCGSSYNLAL--------TISYYFERVLKIRTKAIPAGEVAFQKI-PDLEERGLAFLFSRTGNT--------TE 115 (342)
T ss_dssp CEEEEEESTHHHHHHH--------HHHHHHHHHHCCEEEEEEHHHHHTTCS-CCCCSSEEEEEECSSSCC--------HH
T ss_pred CEEEEEEchHHHHHHH--------HHHHHHHHhhCCeEEEECchHHHhcCc-ccCCCCeEEEEEcCCCCC--------HH
Confidence 4777777766432211 24455555 688777765432111011 12222 44443 333211 34
Q ss_pred HHHHHHHHHhcCCcEEEEch
Q 033165 81 LIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~ 100 (126)
..+.++.+.+.+.++++|+-
T Consensus 116 ~l~a~~~ak~~Ga~vIaIT~ 135 (342)
T 1j5x_A 116 VLLANDVLKKRNHRTIGITI 135 (342)
T ss_dssp HHHHHHHHHHTTEEEEEEES
T ss_pred HHHHHHHHHHCCCCEEEEEC
Confidence 55667777778999999985
No 285
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=37.76 E-value=43 Score=24.77 Aligned_cols=90 Identities=10% Similarity=0.043 Sum_probs=47.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC--CCeEEEEEccCCCCCCCCCCCCcCEEEE-cCCCCCCCCCchHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE--GETWDVFHVARGEFPDDDDFGSYDGYVI-TGSCNDAHGNDVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~--g~~~~~~~~~~~~~p~~~~~~~~d~iii-~G~~~~~~~~~~~~~~ 80 (126)
.||.++-+++..... ..+..+|.+. |.++..+...+-.......+.+-|.+|+ +-|..+ .+
T Consensus 26 ~~I~i~G~GtS~~aa--------~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~T--------~e 89 (329)
T 3eua_A 26 DHVFFVACGGSSAIM--------YPSKYVFDRESKSINSDLYSANEFIQRNPVQLGEKSLVILCSHSGNT--------PE 89 (329)
T ss_dssp CEEEEEECTHHHHTT--------HHHHHHHHHHCSSCEEEEEEHHHHHHHCCTTCSTTEEEEEEESSSCC--------HH
T ss_pred CEEEEEEccHHHHHH--------HHHHHHHHHhcCCCeEEEEccHHHHhcCccCCCCCcEEEEEcCCCCC--------HH
Confidence 578888777653221 1244555543 7777776532110001113444454444 333211 34
Q ss_pred HHHHHHHHHhcCCcEEEEch-HHHHHHHHh
Q 033165 81 LIALLKQLDSLRKKVLGICF-GHQVRAITV 109 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~-G~Q~la~~~ 109 (126)
..+.++.+.+.+.++++||. .---|++..
T Consensus 90 ~l~a~~~ak~~Ga~~iaIT~~~~S~La~~a 119 (329)
T 3eua_A 90 TVKAAAFARGKGALTIAMTFKPESPLAQEA 119 (329)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTSHHHHHS
T ss_pred HHHHHHHHHHCCCCEEEEECCCCChHHHhC
Confidence 55667777778999999993 334455543
No 286
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=37.66 E-value=98 Score=21.25 Aligned_cols=60 Identities=7% Similarity=0.026 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC---CC--CCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD---DD--DFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~---~~--~~~~~d~iii~G~ 67 (126)
++|+++..+..++... ....-+.+.+++.|.++.+.....+.-.. .+ .-...||+|+.+.
T Consensus 2 ~~Igvi~~~~~~~f~~----~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~ 66 (271)
T 2dri_A 2 DTIALVVSTLNNPFFV----SLKDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPT 66 (271)
T ss_dssp CEEEEEESCSSSHHHH----HHHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHTTTTEEEEEECCS
T ss_pred cEEEEEecCCCCHHHH----HHHHHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 5788887665544211 22333455666778888776532210000 00 1247999999754
No 287
>3e5n_A D-alanine-D-alanine ligase A; bacterial blight; 2.00A {Xanthomonas oryzae PV} PDB: 3r5f_A* 3rfc_A*
Probab=37.60 E-value=44 Score=25.34 Aligned_cols=44 Identities=7% Similarity=-0.028 Sum_probs=27.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|.++||+||--+...+.-.+-. -...+.+.|.+.+.++..+.+.
T Consensus 20 m~~~~v~vl~GG~S~E~evSl~--Sa~~v~~al~~~~~~v~~i~i~ 63 (386)
T 3e5n_A 20 MRKIRVGLIFGGKSAEHEVSLQ--SARNILDALDPQRFEPVLIGID 63 (386)
T ss_dssp -CCEEEEEEEECSSTTHHHHHH--HHHHHHHHSCTTTEEEEEEEEC
T ss_pred cCCceEEEEeccCCCCchhHHH--HHHHHHHHhCccCCEEEEEEEC
Confidence 7788999999887765322210 1234557777778777766654
No 288
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=37.54 E-value=33 Score=23.42 Aligned_cols=106 Identities=20% Similarity=0.177 Sum_probs=56.4
Q ss_pred CC-CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC---CCeEE-EEEccCCCCCC-----------C-------CCCC
Q 033165 1 MG-GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE---GETWD-VFHVARGEFPD-----------D-------DDFG 57 (126)
Q Consensus 1 M~-~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~---g~~~~-~~~~~~~~~p~-----------~-------~~~~ 57 (126)
|+ +|||++|...+.. ++++..+.+++.+. |.+++ ++++.+ +|. + +.+.
T Consensus 1 m~~~mkil~I~GS~r~-------~s~t~~l~~~~~~~~~~g~~v~~~idL~~--lP~~~~~~~~~~~~~~~~~~l~~~i~ 71 (193)
T 3svl_A 1 MAEKLQVVTLLGSLRK-------GSFNGMVARTLPKIAPASMEVNALPSIAD--IPLYDADVQQEEGFPATVEALAEQIR 71 (193)
T ss_dssp ---CEEEEEEECCCST-------TCHHHHHHHHGGGTSCTTEEEEECCCSTT--CCCCCHHHHHHTCSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEEccCCC-------CCHHHHHHHHHHHHccCCCEEEEEEeHHH--CCCCCcccccccCCCHHHHHHHHHHH
Confidence 54 4799999887753 47777788777543 56666 555542 331 0 1345
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHH---HhcCCcEEEEc--hH----------HHHHHHHhCCccccC
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQL---DSLRKKVLGIC--FG----------HQVRAITVFSSHINA 116 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~---~~~~~PvlGIC--~G----------~Q~la~~~Gg~v~~~ 116 (126)
.+|+||+.---++ +.-..-+..+.+++... .=.++|+.-++ .| +.-+...+|..+...
T Consensus 72 ~AD~iv~~sP~y~-~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg~~a~~~Lr~~l~~lg~~v~~~ 144 (193)
T 3svl_A 72 QADGVVIVTPEYN-YSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNK 144 (193)
T ss_dssp HSSEEEEEECCBT-TBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHTTCEECCS
T ss_pred HCCEEEEEecccC-CCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcchHHHHHHHHHHHHHCCCEEcCC
Confidence 7899888632221 11112344444444321 11478876665 22 112334578877643
No 289
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=37.35 E-value=35 Score=23.68 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=34.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC--CC------CCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD--DF------GSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~--~~------~~~d~iii~G~ 67 (126)
..||+++......+ .+.+.|++.|.+++.+.+++...+..+ .+ ..+|.|+++-+
T Consensus 120 g~~vL~~rg~~~r~-----------~l~~~L~~~G~~v~~~~~Y~~~~~~~~~~~~~~~l~~~~~d~v~ftS~ 181 (240)
T 3mw8_A 120 GKQIVIVRGKGGRE-----------AMADGLRLRGANVSYLEVYQRACPPLDAPASVSRWQSFGIDTIVVTSG 181 (240)
T ss_dssp TCEEEEEEESSSCC-----------HHHHHHHHTTCEEEEEEEEEEECCCCCHHHHHHHHHHHTCCEEECCSH
T ss_pred CCEEEEEeCCCcHH-----------HHHHHHHHCCCEEEEEEEEEeeCCCCCHHHHHHHHHhCCCCEEEEcCH
Confidence 36899888766543 367788899998877766643222110 11 36788888633
No 290
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=37.12 E-value=65 Score=22.48 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc-cCCCCCC----CC--CCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV-ARGEFPD----DD--DFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~-~~~~~p~----~~--~~~~~d~iii~G~ 67 (126)
.+|+++..+..++.. .....-+.+.+++.|.++.+..+ ...+... .+ .-...||||+.+.
T Consensus 2 ~~Igvi~~~~~~~f~----~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~ 68 (288)
T 1gud_A 2 AEYAVVLKTLSNPFW----VDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPL 68 (288)
T ss_dssp CEEEEEESCSSSHHH----HHHHHHHHHHHHHHTCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCS
T ss_pred cEEEEEeCCCCchHH----HHHHHHHHHHHHHcCCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 468888766554421 12233344566677888877662 1111000 00 0146999999764
No 291
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase, ATP-binding, cell shape, cell W biogenesis/degradation, magnesium, manganese; 2.23A {Streptococcus mutans}
Probab=37.03 E-value=43 Score=25.47 Aligned_cols=44 Identities=9% Similarity=0.100 Sum_probs=26.7
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|.++||+||--+...+.-.+-. -...+.+.|.+.+.++..+.+.
T Consensus 35 m~~~~v~vl~GG~S~E~evSl~--Sa~~v~~al~~~~~~v~~i~i~ 78 (383)
T 3k3p_A 35 MSKETLVLLYGGRSAERDVSVL--SAESVMRAINYDNFLVKTYFIT 78 (383)
T ss_dssp --CEEEEEEEECSSTTHHHHHH--HHHHHHHHSCTTTEEEEEEEEC
T ss_pred ccCCeEEEEeCCCCCcchHHHH--HHHHHHHHhhhcCCEEEEEEec
Confidence 7778999999887765322211 1234556777778777766654
No 292
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1
Probab=36.88 E-value=30 Score=24.87 Aligned_cols=57 Identities=23% Similarity=0.167 Sum_probs=31.8
Q ss_pred CCeEEEEEcC-CCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-CCCC------CCCCCcCEEEEcCC
Q 033165 3 GKKFAVLLCA-EDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-FPDD------DDFGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-~p~~------~~~~~~d~iii~G~ 67 (126)
.+||+|.... ..... .+.+.+.|++.|.++..+.+.+-. .+.. ..+.+||.||++-.
T Consensus 21 g~~vlvtr~~~~~~~~--------~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~l~~~~~~d~lifTS~ 85 (286)
T 1jr2_A 21 HMKVLLLKDAKEDDCG--------QDPYIRELGLYGLEATLIPVLSFEFLSLPSFSEKLSHPEDYGGLIFTSP 85 (286)
T ss_dssp -CEEEEEESSCCCBTT--------BCHHHHHHHTTTCEEEEEECEEEEECCHHHHHHHHTCGGGCSEEEECCH
T ss_pred CCEEEEEcCCCCCCCC--------CcHHHHHHHHCCCceEEEeeEEEecCCHHHHHHHHhCcccccEEEEeCH
Confidence 4788888775 33200 012567888899887555432111 0100 13578999999843
No 293
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=36.42 E-value=40 Score=19.83 Aligned_cols=32 Identities=9% Similarity=-0.064 Sum_probs=19.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV 42 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 42 (126)
|...||+|++.+.. ....+...|+..|.++..
T Consensus 1 m~~~~ilivdd~~~----------~~~~l~~~l~~~~~~v~~ 32 (123)
T 1xhf_A 1 MQTPHILIVEDELV----------TRNTLKSIFEAEGYDVFE 32 (123)
T ss_dssp -CCCEEEEECSCHH----------HHHHHHHHHHTTTCEEEE
T ss_pred CCCceEEEEeCCHH----------HHHHHHHHHhhCCcEEEE
Confidence 77789999865432 123466777777776543
No 294
>3hba_A Putative phosphosugar isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE CIT; 2.00A {Shewanella denitrificans OS217}
Probab=35.99 E-value=90 Score=23.18 Aligned_cols=80 Identities=6% Similarity=-0.143 Sum_probs=42.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccC-CCCCCCCCCCCcCEE-EEcCCCCCCCCCchHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVAR-GEFPDDDDFGSYDGY-VITGSCNDAHGNDVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~-~~~p~~~~~~~~d~i-ii~G~~~~~~~~~~~~~~ 80 (126)
.||.++-++....... .+..+|++ .|.++..+.... ..+..+ .+.+-|.+ +++-|..+ .+
T Consensus 43 ~~I~i~G~G~S~~aa~--------~~~~~l~~~~g~~v~~~~~~~~~~~~~~-~~~~~dl~i~iS~SG~T--------~e 105 (334)
T 3hba_A 43 KFVMIVGRGSSDHAGV--------FAKYLFEIEASIPTFAAAPSVASVYGKT-LKLAGGLVIVISQSGRS--------PD 105 (334)
T ss_dssp SCEEEESSGGGCHHHH--------HHHHHHHHHHCCCEEECCHHHHHTSCCC-CCCTTCEEEEEESSSCC--------HH
T ss_pred CEEEEEEechHHHHHH--------HHHHHHHHHhCCcEEEEcchHHHHhccc-CCCCCCEEEEEeCCCCC--------HH
Confidence 5777777777643322 23445543 577777653321 011111 23344443 33444221 33
Q ss_pred HHHHHHHHHhcCCcEEEEch
Q 033165 81 LIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~ 100 (126)
..+.++.+.+.+.++++||.
T Consensus 106 ~~~a~~~ak~~g~~~i~IT~ 125 (334)
T 3hba_A 106 ILAQARMAKNAGAFCVALVN 125 (334)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHcCCcEEEEeC
Confidence 55667777778999999985
No 295
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=35.92 E-value=61 Score=22.41 Aligned_cols=78 Identities=9% Similarity=0.051 Sum_probs=40.7
Q ss_pred CeEEEEEcC--CCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-----CCC--CCCcCEEEEcCCCCCCCCC
Q 033165 4 KKFAVLLCA--EDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-----DDD--FGSYDGYVITGSCNDAHGN 74 (126)
Q Consensus 4 ~ki~Il~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-----~~~--~~~~d~iii~G~~~~~~~~ 74 (126)
.+|+++..+ ...+. |..+..-+.+.+++.|.++.++....+ +. .+. -.++||||+.+... +
T Consensus 20 ~~Ig~i~~~~~~~~~~----~~~~~~gi~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgii~~~~~~---~- 89 (296)
T 3brq_A 20 QTLGLVVTNTLYHGIY----FSELLFHAARMAEEKGRQLLLADGKHS--AEEERQAIQYLLDLRCDAIMIYPRFL---S- 89 (296)
T ss_dssp CEEEEEECGGGCC--C----HHHHHHHHHHHHHHTTCEEEEECCTTS--HHHHHHHHHHHHHTTCSEEEEECSSS---C-
T ss_pred ceEEEEeCCcccCCch----HHHHHHHHHHHHHHCCCEEEEEeCCCC--HHHHHHHHHHHHhcCCCEEEEecCCC---C-
Confidence 578888765 33221 112233345666778888776643211 10 001 15799999986532 1
Q ss_pred chHHHHHHHHHHHHHh-cCCcEEEE
Q 033165 75 DVWICKLIALLKQLDS-LRKKVLGI 98 (126)
Q Consensus 75 ~~~~~~~~~~i~~~~~-~~~PvlGI 98 (126)
.+ .++.+.+ .++|++-+
T Consensus 90 ~~-------~~~~l~~~~~iPvV~~ 107 (296)
T 3brq_A 90 VD-------EIDDIIDAHSQPIMVL 107 (296)
T ss_dssp HH-------HHHHHHHTCSSCEEEE
T ss_pred hH-------HHHHHHhcCCCCEEEE
Confidence 11 1233444 68888665
No 296
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=35.46 E-value=1.2e+02 Score=22.01 Aligned_cols=61 Identities=16% Similarity=0.118 Sum_probs=29.4
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh--CCCeEEEEEccCCCCCCC----C--CCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE--EGETWDVFHVARGEFPDD----D--DFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~--~g~~~~~~~~~~~~~p~~----~--~~~~~d~iii~G~ 67 (126)
..|+++-.+.......+ .|...+.+-+++ .|..+.++....+..... + .-..+||||+.+.
T Consensus 69 ~~Igvi~~~~~~~~~~~---~~~~~~~~gi~~~a~g~~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~ 137 (366)
T 3h5t_A 69 GAIGVLLTEDLTYAFED---MASVDFLAGVAQAAGDTQLTLIPASPASSVDHVSAQQLVNNAAVDGVVIYSV 137 (366)
T ss_dssp CEEEEEESSCTTHHHHS---HHHHHHHHHHHHHSSSCEEEEEECCCCTTCCHHHHHHHHHTCCCSCEEEESC
T ss_pred CEEEEEecCCccccccC---HHHHHHHHHHHHHHhhCCEEEEEcCCCccHHHHHHHHHHHhCCCCEEEEecC
Confidence 56888877644321211 222223332221 177777766432210000 0 1257999999865
No 297
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=35.29 E-value=56 Score=24.44 Aligned_cols=89 Identities=7% Similarity=-0.012 Sum_probs=46.2
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-C-CCeEEEEEccCCCCCCCCCCCCcCEEEE-cCCCCCCCCCchHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-E-GETWDVFHVARGEFPDDDDFGSYDGYVI-TGSCNDAHGNDVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~-g~~~~~~~~~~~~~p~~~~~~~~d~iii-~G~~~~~~~~~~~~~~ 80 (126)
.||.++-+++..... ..+..+|.+ . +..+..+...+-....+..+.+-|.+|+ +-|..+ .+
T Consensus 41 ~~I~i~G~GtS~~aa--------~~~~~~l~~~~~g~~~~~~~~~e~~~~~~~~l~~~dlvI~iS~SG~T--------~e 104 (347)
T 3fkj_A 41 ERVWFVGCGGSLTGF--------WPGKYFLDCEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNT--------AE 104 (347)
T ss_dssp CEEEEEESTHHHHTT--------HHHHHHHHHHCSSCEEEEEEHHHHHHSCCTTCSTTEEEEEEESSSCC--------HH
T ss_pred CEEEEEEehHHHHHH--------HHHHHHHHHHhCCCeEEEeCcHHHHhhCcCCCCCCCEEEEEeCCCCc--------HH
Confidence 578888777653221 123445554 3 7777766533110011113444454444 333211 33
Q ss_pred HHHHHHHHHhcCCcEEEEch-HHHHHHHH
Q 033165 81 LIALLKQLDSLRKKVLGICF-GHQVRAIT 108 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~-G~Q~la~~ 108 (126)
..+.++.+.+.+.++++||. .---|++.
T Consensus 105 ~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ 133 (347)
T 3fkj_A 105 TVAAARVAREKGAATIGLVYQPDTPLCEY 133 (347)
T ss_dssp HHHHHHHHHHHTCEEEEEESSTTCHHHHT
T ss_pred HHHHHHHHHHCCCcEEEEeCCCCChHHhh
Confidence 55666666677999999993 33345553
No 298
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=35.08 E-value=74 Score=23.52 Aligned_cols=89 Identities=12% Similarity=0.024 Sum_probs=43.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC-CCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD-DDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~-~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
+|++|+...... +.+. ....+.+.+.+.|.+++++++...+... .+.+.++|++++.-..... ...+-+..+.
T Consensus 252 ~~i~i~y~S~~G-nT~~----lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~y~~-~~~~~~~~~l 325 (398)
T 1ycg_A 252 AKAVIAYDTMWL-STEK----MAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINN-DILPVVSPLL 325 (398)
T ss_dssp SEEEEEECCSSS-HHHH----HHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBTT-BCCGGGHHHH
T ss_pred CeEEEEEECCcc-HHHH----HHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCc-cchHHHHHHH
Confidence 577777655432 1111 2233445556678888888875322100 0123579999886443322 1112233333
Q ss_pred HHHHHHHhcCCcEEEE
Q 033165 83 ALLKQLDSLRKKVLGI 98 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGI 98 (126)
+.+....-.++++.-+
T Consensus 326 ~~l~~~~~~~k~~~~~ 341 (398)
T 1ycg_A 326 DDLVGLRPKNKVGLAF 341 (398)
T ss_dssp HHHHHHCCSSCEEEEE
T ss_pred HHHhccccCCCEEEEE
Confidence 3333221146776533
No 299
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=34.85 E-value=1.2e+02 Score=21.32 Aligned_cols=59 Identities=17% Similarity=0.043 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCC--CCcCEEEEc
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDF--GSYDGYVIT 65 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~--~~~d~iii~ 65 (126)
+++||+||-.+...+.-.+- .-...+.+.+++.|.++..+...+ .+. ..+ .++|.++..
T Consensus 1 m~~~i~il~gg~s~e~~~s~--~~~~~l~~al~~~G~~v~~~~~~~--~~~-~~~~~~~~d~v~~~ 61 (306)
T 1iow_A 1 MTDKIAVLLGGTSAEREVSL--NSGAAVLAGLREGGIDAYPVDPKE--VDV-TQLKSMGFQKVFIA 61 (306)
T ss_dssp CCCEEEEECCCSSTTHHHHH--HHHHHHHHHHHHTTCEEEEECTTT--SCG-GGTTTTTEEEEEEC
T ss_pred CCcEEEEEeCCCCccceEcH--HhHHHHHHHHHHCCCeEEEEecCc--hHH-HHhhccCCCEEEEc
Confidence 14689999765543211100 012357788889999888776542 121 112 467877654
No 300
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=34.82 E-value=89 Score=23.03 Aligned_cols=45 Identities=18% Similarity=0.163 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCchHH--HHhhC---CHHHHHHHHHhhCCCeEEEEEcc
Q 033165 2 GGKKFAVLLCAEDSEYV--KKKYG---GYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~--~~~~~---~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
.||||+++-....+... ....| .+...+.+.|.+.|.+++++...
T Consensus 19 ~mmkIl~i~~~~~p~~~~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~ 68 (438)
T 3c48_A 19 SHMRVAMISMHTSPLQQPGTGDSGGMNVYILSTATELAKQGIEVDIYTRA 68 (438)
T ss_dssp CCCEEEEECTTSCTTCC-------CHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred chheeeeEEeeccccccCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 47899999865432100 00112 24556778888889999988754
No 301
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=34.39 E-value=1.3e+02 Score=23.55 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=31.0
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC-------------C-CCCCCCCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE-------------F-PDDDDFGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~-------------~-p~~~~~~~~d~iii~G~ 67 (126)
+||.|+-.+..-- .-+.++|.+.|.++...+..... + ..++.+.++|.||++.|
T Consensus 23 ~~v~viGiG~sG~----------s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spg 90 (494)
T 4hv4_A 23 RHIHFVGIGGAGM----------GGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTA 90 (494)
T ss_dssp CEEEEETTTSTTH----------HHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTT
T ss_pred CEEEEEEEcHhhH----------HHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCC
Confidence 5788886665421 12466777788877766532100 0 01124567899999765
No 302
>1d3y_A DNA topoisomerase VI A subunit; DNA binding protein, SPO11 homolog; HET: DNA; 2.00A {Methanocaldococcus jannaschii} SCOP: e.12.1.1
Probab=34.32 E-value=1e+02 Score=22.72 Aligned_cols=48 Identities=15% Similarity=0.092 Sum_probs=29.9
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhc-CCcEEEEc----hHH-HHHHHHhCCc
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSL-RKKVLGIC----FGH-QVRAITVFSS 112 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~-~~PvlGIC----~G~-Q~la~~~Gg~ 112 (126)
.++.|+|+|...+. ...+.+++.+.+. +.|+++.+ +|. .+++..--|.
T Consensus 145 ~~~~ilIt~kGyPd-------~aTR~fl~~L~~~~~lpv~~l~D~DP~G~~~I~~tyk~GS 198 (301)
T 1d3y_A 145 KHNCILVSLKGVPA-------RATRRFIKRLHEEHDLPVLVFTDGDPYGYLNIYRTLKVGS 198 (301)
T ss_dssp HTTEEEEECCSSCC-------HHHHHHHHHHHHHHTCCEEEECCBSHHHHHTHHHHHHC--
T ss_pred cCCEEEEECCCCCC-------HHHHHHHHHHHHhcCCCEEEEecCChHHHHHHHHHHHhCc
Confidence 36789999876532 1233444444332 89999998 999 7777655443
No 303
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=34.11 E-value=27 Score=21.72 Aligned_cols=28 Identities=7% Similarity=-0.162 Sum_probs=16.7
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhC-CC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEE-GE 38 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~-g~ 38 (126)
|+++||+|++.+.. +...+.+.|+.. |.
T Consensus 1 M~~~~iLivdd~~~----------~~~~l~~~L~~~~g~ 29 (154)
T 2qsj_A 1 MSLTVVLIVDDHHL----------IRAGAKNLLEGAFSG 29 (154)
T ss_dssp --CEEEEEECSCHH----------HHHHHHHHHHHHCTT
T ss_pred CCccEEEEEcCCHH----------HHHHHHHHHHhCCCc
Confidence 88889999965432 223466777665 65
No 304
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=33.98 E-value=54 Score=20.83 Aligned_cols=34 Identities=15% Similarity=-0.003 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHV 45 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 45 (126)
|..+|++|+-++ .....+.+.|.+.|.++.++..
T Consensus 1 ~~~~~vlI~G~G-----------~vG~~la~~L~~~g~~V~vid~ 34 (153)
T 1id1_A 1 HRKDHFIVCGHS-----------ILAINTILQLNQRGQNVTVISN 34 (153)
T ss_dssp CCCSCEEEECCS-----------HHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCCCcEEEECCC-----------HHHHHHHHHHHHCCCCEEEEEC
Confidence 778899988432 2345577777778888887764
No 305
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=33.55 E-value=85 Score=19.34 Aligned_cols=80 Identities=10% Similarity=-0.040 Sum_probs=39.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
.+||+|++.+.. +...+.+.|+..|.++..+.-....+... .-..+|.+|+--.... .+. ..+.
T Consensus 3 ~~~ILivdd~~~----------~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-~~~~~dliild~~l~~-~~g----~~~~ 66 (155)
T 1qkk_A 3 APSVFLIDDDRD----------LRKAMQQTLELAGFTVSSFASATEALAGL-SADFAGIVISDIRMPG-MDG----LALF 66 (155)
T ss_dssp -CEEEEECSCHH----------HHHHHHHHHHHTTCEEEEESCHHHHHHTC-CTTCCSEEEEESCCSS-SCH----HHHH
T ss_pred CCEEEEEeCCHH----------HHHHHHHHHHHcCcEEEEECCHHHHHHHH-HhCCCCEEEEeCCCCC-CCH----HHHH
Confidence 468888865432 22346778888887765443111101011 1245887777432111 111 1233
Q ss_pred HHHHHHHhcCCcEEEEc
Q 033165 83 ALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC 99 (126)
+.++.. ....|++-+.
T Consensus 67 ~~l~~~-~~~~pii~ls 82 (155)
T 1qkk_A 67 RKILAL-DPDLPMILVT 82 (155)
T ss_dssp HHHHHH-CTTSCEEEEE
T ss_pred HHHHhh-CCCCCEEEEE
Confidence 334433 2478988775
No 306
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=33.37 E-value=15 Score=25.84 Aligned_cols=59 Identities=12% Similarity=0.179 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe-EEEEEccCCCCCC----CCC--CCCcCEEEEcC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET-WDVFHVARGEFPD----DDD--FGSYDGYVITG 66 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~p~----~~~--~~~~d~iii~G 66 (126)
+.+|+++..+..++.. ..+..-+.+.+++.|.+ +.++....+. .. .+. -..+||||+.+
T Consensus 10 ~~~Igvi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 10 SKMIGIIIPDLNNRFY----AQIIDGIQEVIQKEGYTALISFSTNSDV-KKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp CCEEEEEESCTTSHHH----HHHHHHHHHHHHHTTCEEEEEECSSCCH-HHHHHHHHHHHHTTCSEEEEEC
T ss_pred CCEEEEEeCCCCChhH----HHHHHHHHHHHHHCCCCEEEEEeCCCCh-HHHHHHHHHHHhCCCCEEEEcc
Confidence 4678999876655422 12334455667778988 6665432210 00 001 15799999987
No 307
>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}
Probab=33.34 E-value=1.3e+02 Score=21.39 Aligned_cols=11 Identities=18% Similarity=0.199 Sum_probs=8.2
Q ss_pred CCCCeEEEEEc
Q 033165 1 MGGKKFAVLLC 11 (126)
Q Consensus 1 M~~~ki~Il~~ 11 (126)
|.|+||+|+-+
T Consensus 1 M~MmkI~ViGa 11 (243)
T 3qy9_A 1 MASMKILLIGY 11 (243)
T ss_dssp --CCEEEEECC
T ss_pred CCceEEEEECc
Confidence 88999999977
No 308
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=33.22 E-value=55 Score=20.56 Aligned_cols=58 Identities=19% Similarity=0.160 Sum_probs=33.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHH----hhCCCeEEEEEcc----CCCCCCCCCCCCcCEEEEcCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRML----AEEGETWDVFHVA----RGEFPDDDDFGSYDGYVITGS 67 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l----~~~g~~~~~~~~~----~~~~p~~~~~~~~d~iii~G~ 67 (126)
|.|+-++|.-|.+.-.. +++-.+.| ++.|.++.+-.-. .+.++ .+++.+.|.||+..-
T Consensus 1 m~mkivaVtaCptGiAh--------TymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt-~~~I~~AD~VIia~d 66 (106)
T 2m1z_A 1 MKRKIIAVTACATGVAH--------TYMAAQALKKGAKKMGNLIKVETQGATGIENELT-EKDVNIGEVVIFAVD 66 (106)
T ss_dssp CCCEEEEEEECSSCHHH--------HHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCC-HHHHHHCSEEEEEES
T ss_pred CCccEEEEEECCCcHHH--------HHHHHHHHHHHHHHCCCEEEEEEecCccccCCCC-HHHHhhCCEEEEecc
Confidence 65656677777776432 33334444 4568777654422 13332 235688999999855
No 309
>4a3s_A 6-phosphofructokinase; transferase, glycolysis, degradosome; 2.30A {Bacillus subtilis} PDB: 6pfk_A 3u39_A 3pfk_A 4pfk_A* 1mto_A*
Probab=33.02 E-value=45 Score=25.00 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=30.0
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHH
Q 033165 61 GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAI 107 (126)
Q Consensus 61 ~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~ 107 (126)
||+-+||+.+.-. ..++.+++.+...+.-++|+..|.+=|..
T Consensus 5 gIltsGG~~pG~N-----a~ir~vv~~a~~~g~~v~Gi~~G~~Gl~~ 46 (319)
T 4a3s_A 5 GVLTSGGDSPGMN-----AAVRAVVRKAIYHDVEVYGIYNGYAGLIS 46 (319)
T ss_dssp EEEEESSCCTTHH-----HHHHHHHHHHHHTTCEEEEECSTTHHHHH
T ss_pred EEECcCCCcHHHH-----HHHHHHHHHHHHCCCEEEEEecchHHHcC
Confidence 6788888654311 22445666666778889999999998865
No 310
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=32.15 E-value=45 Score=20.25 Aligned_cols=81 Identities=15% Similarity=-0.006 Sum_probs=39.0
Q ss_pred CCC-CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHH
Q 033165 1 MGG-KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWIC 79 (126)
Q Consensus 1 M~~-~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~ 79 (126)
|++ +||+|++.+.. +...+.+.|+..|.++..+.-....+... .-..+|.||+-- .. + ... .
T Consensus 1 M~~~~~iLivdd~~~----------~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-~~~~~dlvi~d~--~~--~-~~g-~ 63 (142)
T 2qxy_A 1 MSLTPTVMVVDESRI----------TFLAVKNALEKDGFNVIWAKNEQEAFTFL-RREKIDLVFVDV--FE--G-EES-L 63 (142)
T ss_dssp --CCCEEEEECSCHH----------HHHHHHHHHGGGTCEEEEESSHHHHHHHH-TTSCCSEEEEEC--TT--T-HHH-H
T ss_pred CCCCCeEEEEeCCHH----------HHHHHHHHHHhCCCEEEEECCHHHHHHHH-hccCCCEEEEeC--CC--C-CcH-H
Confidence 554 58888865432 22357788888887766433111000000 114688888753 21 1 111 1
Q ss_pred HHHHHHHHHHhcCCcEEEEc
Q 033165 80 KLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 80 ~~~~~i~~~~~~~~PvlGIC 99 (126)
++.+.+++. ....|++.+.
T Consensus 64 ~~~~~l~~~-~~~~pii~ls 82 (142)
T 2qxy_A 64 NLIRRIREE-FPDTKVAVLS 82 (142)
T ss_dssp HHHHHHHHH-CTTCEEEEEE
T ss_pred HHHHHHHHH-CCCCCEEEEE
Confidence 223333332 1368988876
No 311
>2vvp_A Ribose-5-phosphate isomerase B; RPIB, RV2465C, RARE sugar, carbohydrate metabolism, pentose phosphate pathway; HET: R52 5RP; 1.65A {Mycobacterium tuberculosis} SCOP: c.121.1.1 PDB: 2vvo_A* 2vvq_A* 2bes_A* 2bet_A* 1usl_A
Probab=31.86 E-value=30 Score=23.59 Aligned_cols=35 Identities=11% Similarity=0.001 Sum_probs=19.5
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|++|||+|-. ++.--.. -..+.++|++.|.++.-+
T Consensus 1 m~~MkIaigs-DhaG~~l-------K~~i~~~L~~~G~eV~D~ 35 (162)
T 2vvp_A 1 MSGMRVYLGA-DHAGYEL-------KQRIIEHLKQTGHEPIDC 35 (162)
T ss_dssp --CCEEEEEE-CHHHHHH-------HHHHHHHHHHTTCEEEEC
T ss_pred CCCCEEEEEe-CchhHHH-------HHHHHHHHHHCCCEEEEe
Confidence 7888987653 3221111 234778888889866544
No 312
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=31.82 E-value=65 Score=23.96 Aligned_cols=40 Identities=10% Similarity=0.001 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|.|+||+++-.. ....+.- .-.+.+.|.+.|.+++++...
T Consensus 10 m~~~~Il~~~~~-~~GHv~p-----~l~la~~L~~~Gh~V~~~~~~ 49 (424)
T 2iya_A 10 VTPRHISFFNIP-GHGHVNP-----SLGIVQELVARGHRVSYAITD 49 (424)
T ss_dssp -CCCEEEEECCS-CHHHHHH-----HHHHHHHHHHTTCEEEEEECG
T ss_pred cccceEEEEeCC-CCcccch-----HHHHHHHHHHCCCeEEEEeCH
Confidence 678899998332 2222111 113556777889999888643
No 313
>3r5x_A D-alanine--D-alanine ligase; alpha-beta structure, cytosol, structural genomics, for structural genomics of infectious diseases, csgid; HET: MSE ATP; 2.00A {Bacillus anthracis} PDB: 3r23_A*
Probab=31.59 E-value=24 Score=25.26 Aligned_cols=60 Identities=8% Similarity=-0.056 Sum_probs=34.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
+|||+||-.+...+.-.+.+ =...+.+.|++.|.++..+.+.... .....+.++|.++..
T Consensus 3 ~m~v~vl~gg~s~e~~vs~~--s~~~v~~al~~~g~~v~~i~~~~~~-~~~~~~~~~D~v~~~ 62 (307)
T 3r5x_A 3 AMRIGVIMGGVSSEKQVSIM--TGNEMIANLDKNKYEIVPITLNEKM-DLIEKAKDIDFALLA 62 (307)
T ss_dssp CEEEEEEECCSHHHHHHHHH--HHHHHHHHSCTTTEEEEEEECSSGG-GHHHHTTTCSEEEEC
T ss_pred CcEEEEEeCCCCcchHhHHH--HHHHHHHHHHHCCCEEEEEcccCch-hHHHhccCCCEEEEe
Confidence 57999998776543211111 0234567778888887777654211 001134578887764
No 314
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=31.47 E-value=46 Score=24.47 Aligned_cols=33 Identities=21% Similarity=0.215 Sum_probs=20.9
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFH 44 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 44 (126)
|+++||+|+-.+. ....+...|.+.|.++.++.
T Consensus 1 M~~mkI~IiGaG~-----------~G~~~a~~L~~~g~~V~~~~ 33 (335)
T 3ghy_A 1 MSLTRICIVGAGA-----------VGGYLGARLALAGEAINVLA 33 (335)
T ss_dssp -CCCCEEEESCCH-----------HHHHHHHHHHHTTCCEEEEC
T ss_pred CCCCEEEEECcCH-----------HHHHHHHHHHHCCCEEEEEE
Confidence 8889999995432 33445666666777666554
No 315
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=30.74 E-value=1.4e+02 Score=20.97 Aligned_cols=57 Identities=7% Similarity=-0.042 Sum_probs=34.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSC 68 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~ 68 (126)
.+|++|+.....- .++ .+...+.+.+ ..|.+++++.+.+.+ .+++.+++.+|+.-+.
T Consensus 40 ~~kv~IlYgS~tG-nte----~~A~~La~~l-~~g~~v~v~~l~~~~---~~~l~~~~~vI~~tsT 96 (219)
T 3hr4_A 40 RVRVTILFATETG-KSE----ALAWDLGALF-SCAFNPKVVCMDKYR---LSCLEEERLLLVVTST 96 (219)
T ss_dssp SCEEEEEEECSSS-HHH----HHHHHHHHHH-TTTSEEEEEEGGGCC---GGGGGTCSEEEEEEEC
T ss_pred CCcEEEEEECCch-HHH----HHHHHHHHHH-HcCCCeEEEEcccCC---HhHhccCCeEEEEEec
Confidence 3678888665542 222 2445566655 367888888875422 2356678888876443
No 316
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=30.30 E-value=40 Score=19.92 Aligned_cols=51 Identities=8% Similarity=-0.110 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI 64 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii 64 (126)
++||+|++.+.. +...+...|+..|.++..+.-....+... .-..+|.+++
T Consensus 2 ~~~ilivdd~~~----------~~~~l~~~l~~~g~~v~~~~~~~~a~~~~-~~~~~dlvi~ 52 (127)
T 2jba_A 2 ARRILVVEDEAP----------IREMVCFVLEQNGFQPVEAEDYDSAVNQL-NEPWPDLILL 52 (127)
T ss_dssp CCEEEEECSCHH----------HHHHHHHHHHHTTCEEEEECSHHHHHTTC-SSSCCSEEEE
T ss_pred CcEEEEEcCCHH----------HHHHHHHHHHHCCceEEEeCCHHHHHHHH-hccCCCEEEE
Confidence 358888865442 22346677777787665433111101111 1235787776
No 317
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=30.28 E-value=63 Score=24.88 Aligned_cols=56 Identities=9% Similarity=-0.037 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC--------CCCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD--------DDFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~--------~~~~~~d~iii~ 65 (126)
+|||+||...+.... ..+...+.+.+++ ..++++++++... |.. +.+..+|+||+.
T Consensus 236 ~mkiLvi~gspr~~s-----s~~n~~l~~~~~~-~~~v~v~dL~~~~-p~~~~d~~~~~~~l~~aD~iv~~ 299 (413)
T 3l9w_A 236 SGMILIIYAHPYPHH-----SHANKRMLEQART-LEGVEIRSLYQLY-PDFNIDIAAEQEALSRADLIVWQ 299 (413)
T ss_dssp -CCEEEEECCSCGGG-----CSHHHHHHHHHHT-SSSEEEEEHHHHC-TTSCCCHHHHHHHHHTCSEEEEE
T ss_pred CCCEEEEEECCCcch-----HHHHHHHHHHHhc-CCCEEEEEchhhC-CCCcHHHHHHHHHHHhCCEEEEE
Confidence 489999988766432 2366666666654 4678888775321 211 124578998885
No 318
>3afo_A NADH kinase POS5; alpha/beta+BETA sandwich, ATP-binding, mitochondrion NADP, nucleotide-binding, transferase, transit peptide; HET: NAI; 2.00A {Saccharomyces cerevisiae}
Probab=30.03 E-value=29 Score=26.86 Aligned_cols=34 Identities=18% Similarity=0.215 Sum_probs=23.5
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCC-cEEEEchH
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRK-KVLGICFG 101 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~-PvlGIC~G 101 (126)
++|.+|+.||- ..+....+.+...++ |++||=.|
T Consensus 114 ~~DlVIvlGGD----------GTlL~aa~~~~~~~vpPiLGIN~G 148 (388)
T 3afo_A 114 RTDLLVTLGGD----------GTILHGVSMFGNTQVPPVLAFALG 148 (388)
T ss_dssp HCSEEEEEESH----------HHHHHHHHTTTTSCCCCEEEEECS
T ss_pred CCCEEEEEeCc----------HHHHHHHHHhcccCCCeEEEEECC
Confidence 57999999992 234444555544577 89999776
No 319
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=29.95 E-value=1.2e+02 Score=20.90 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=33.1
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCC----CCC--CCCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPD----DDD--FGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~----~~~--~~~~d~iii~G~ 67 (126)
..+|+++..+...+.. ..+..-+.+.+++.|.++.++....+ ... .+. -.++||||+.+.
T Consensus 7 ~~~Ig~i~~~~~~~~~----~~~~~gi~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYF----AEIIEAVEKNCFQKGYTLILGNAWNN-LEKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp -CEEEEEESCTTSHHH----HHHHHHHHHHHHHHTCEEEEEECTTC-HHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCEEEEEeCCCCChHH----HHHHHHHHHHHHHcCCeEEEEcCCCC-hHHHHHHHHHHHhCCCCEEEEEec
Confidence 3578998866554321 12333455666677888877653211 000 001 157999999875
No 320
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=29.78 E-value=29 Score=24.40 Aligned_cols=53 Identities=17% Similarity=0.050 Sum_probs=29.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCC-------CC-CCcCEEEEcCC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDD-------DF-GSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~-------~~-~~~d~iii~G~ 67 (126)
.+||+|..... . +.+.+.|++.|.++..+...+-..++.+ .+ ++||.||++-.
T Consensus 8 g~~vlvtr~~~-~-----------~~l~~~L~~~G~~~~~~P~i~i~~~~~~~l~~~~~~l~~~~d~iiftS~ 68 (261)
T 1wcw_A 8 AVRVAYAGLRR-K-----------EAFKALAEKLGFTPLLFPVQATEKVPVPEYRDQVRALAQGVDLFLATTG 68 (261)
T ss_dssp CCEEEECCSTT-H-----------HHHHHHHHHTTCEEEECCCEEEEECCGGGGHHHHHHHHTCCSEEEECCH
T ss_pred CCEEEEeCCCc-h-----------HHHHHHHHHCCCcEEEeccEEEecCCHHHHHHHHHhhccCCCEEEEeCH
Confidence 36777775332 1 2367788889987654433211100111 13 37999999843
No 321
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=29.37 E-value=34 Score=20.98 Aligned_cols=31 Identities=10% Similarity=-0.061 Sum_probs=19.2
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV 42 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 42 (126)
.++||+|++.+.... ..+.+.|+..|.++..
T Consensus 7 ~~~~iLivd~~~~~~----------~~l~~~L~~~g~~v~~ 37 (147)
T 2zay_A 7 KWWRIMLVDTQLPAL----------AASISALSQEGFDIIQ 37 (147)
T ss_dssp -CEEEEEECTTGGGG----------HHHHHHHHHHTEEEEE
T ss_pred CCceEEEEeCCHHHH----------HHHHHHHHHcCCeEEE
Confidence 357899887665432 3466777776765553
No 322
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=29.15 E-value=1.6e+02 Score=21.00 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=33.5
Q ss_pred CCeEEEEEcC--CCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 3 GKKFAVLLCA--EDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 3 ~~ki~Il~~~--~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
..+|+++..+ ..++.. ..+..-+.+.+++.|.++.++....+ +.. +. -..+||||+.+.
T Consensus 61 ~~~Igvi~~~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 61 TQTLGLVVTNTLYHGIYF----SELLFHAARMAEEKGRQLLLADGKHS--AEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp CSEEEEEECTTTTSTTHH----HHHHHHHHHHHHHTTCEEEEEECTTS--HHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCEEEEEecCCcccChhH----HHHHHHHHHHHHHCCCEEEEEeCCCC--hHHHHHHHHHHHhCCCCEEEEeCC
Confidence 3578888776 333221 12333455666778988887764321 110 00 147999999865
No 323
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=28.89 E-value=56 Score=24.29 Aligned_cols=40 Identities=13% Similarity=-0.025 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|.|+||+++-. .....+. ..-.+.+.|.+.|.+++++...
T Consensus 5 m~m~kIl~~~~-~~~Gh~~-----p~~~la~~L~~~G~~V~~~~~~ 44 (430)
T 2iyf_A 5 TTPAHIAMFSI-AAHGHVN-----PSLEVIRELVARGHRVTYAIPP 44 (430)
T ss_dssp ---CEEEEECC-SCHHHHG-----GGHHHHHHHHHTTCEEEEEECG
T ss_pred cccceEEEEeC-CCCcccc-----chHHHHHHHHHCCCeEEEEeCH
Confidence 55789999733 2221111 1124567777889999988753
No 324
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=28.41 E-value=49 Score=19.93 Aligned_cols=32 Identities=3% Similarity=0.048 Sum_probs=19.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCe-EEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGET-WDVFH 44 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~-~~~~~ 44 (126)
++||+|++.+.. +...+.+.|+. .|.+ +..+.
T Consensus 8 ~~~iLivdd~~~----------~~~~l~~~L~~~~~~~~v~~~~ 41 (143)
T 3cnb_A 8 DFSILIIEDDKE----------FADMLTQFLENLFPYAKIKIAY 41 (143)
T ss_dssp -CEEEEECSCHH----------HHHHHHHHHHHHCTTCEEEEEC
T ss_pred CceEEEEECCHH----------HHHHHHHHHHhccCccEEEEEC
Confidence 578888865443 22346777877 7887 55443
No 325
>2zbk_A Type II DNA topoisomerase VI subunit A; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=28.29 E-value=1.5e+02 Score=22.73 Aligned_cols=47 Identities=15% Similarity=0.270 Sum_probs=30.8
Q ss_pred cCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhc-CCcEEEEc----hHHHHHHHHhCCc
Q 033165 59 YDGYVITGSCNDAHGNDVWICKLIALLKQLDSL-RKKVLGIC----FGHQVRAITVFSS 112 (126)
Q Consensus 59 ~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~-~~PvlGIC----~G~Q~la~~~Gg~ 112 (126)
++.++|+|....... .+.+++.+.+. +.|+++.+ +|.+++...-.|.
T Consensus 226 ~~~ilIt~kG~Pd~a-------TR~fL~~L~~~~~lpv~~l~D~DP~Gi~I~~tyk~GS 277 (389)
T 2zbk_A 226 YKSILITSAGQPDRA-------TRRFVRRLNEELKLPVYILTDADPYGWYIFSVFRIGS 277 (389)
T ss_dssp TTCEEEECCSSCCTT-------HHHHHHHHHHHSCCCEEEECCSSHHHHHHHHHHTSCS
T ss_pred CCEEEEECCCCCCHH-------HHHHHHHHHHhcCCCEEEEecCChhhhhhHHHHhhcc
Confidence 467888877554322 23344444332 89999998 9999998765443
No 326
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=28.26 E-value=1.3e+02 Score=21.72 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCch-HHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 3 GKKFAVLLCAEDSE-YVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 3 ~~ki~Il~~~~~~~-~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
||||+++....+.. .-. ..+...+.+.|.+.|.++.++...
T Consensus 20 ~MkIl~i~~~~~~~~gG~---~~~~~~l~~~L~~~G~~V~v~~~~ 61 (406)
T 2gek_A 20 HMRIGMVCPYSFDVPGGV---QSHVLQLAEVLRDAGHEVSVLAPA 61 (406)
T ss_dssp -CEEEEECSSCTTSCCHH---HHHHHHHHHHHHHTTCEEEEEESC
T ss_pred cceEEEEeccCCCCCCcH---HHHHHHHHHHHHHCCCeEEEEecC
Confidence 68999998654321 000 024556778888889999988765
No 327
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=27.96 E-value=1.1e+02 Score=23.16 Aligned_cols=46 Identities=24% Similarity=0.224 Sum_probs=26.6
Q ss_pred CCC-CeEEEEEcCCCchHH------HHhhC---CHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGG-KKFAVLLCAEDSEYV------KKKYG---GYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~-~ki~Il~~~~~~~~~------~~~~~---~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|++ |||+++-....+... ....| .|...+.+.|.+.|.+++++...
T Consensus 4 m~~~MkIl~i~~~~~P~~~~l~v~~~~~~GG~~~~~~~la~~L~~~G~~V~v~~~~ 59 (499)
T 2r60_A 4 MTRIKHVAFLNPQGNFDPADSYWTEHPDFGGQLVYVKEVSLALAEMGVQVDIITRR 59 (499)
T ss_dssp ---CCEEEEECCSSCCCTTCTTTTSBTTBSHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred ccccceEEEEecCCCccccccccCCCCCCCCeeehHHHHHHHHHhcCCeEEEEeCC
Confidence 443 799999864321000 00011 25566778888889999988754
No 328
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=27.93 E-value=78 Score=22.16 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=11.8
Q ss_pred CCCCeEEEEEcCCCc
Q 033165 1 MGGKKFAVLLCAEDS 15 (126)
Q Consensus 1 M~~~ki~Il~~~~~~ 15 (126)
|+++||+|+-.+...
T Consensus 5 m~~~ri~vl~SG~gs 19 (209)
T 4ds3_A 5 MKRNRVVIFISGGGS 19 (209)
T ss_dssp -CCEEEEEEESSCCH
T ss_pred CCCccEEEEEECCcH
Confidence 788899999888863
No 329
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=27.92 E-value=1.8e+02 Score=21.54 Aligned_cols=80 Identities=10% Similarity=-0.097 Sum_probs=41.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccCCCCCCCCCCC-CcCEEE-EcCCCCCCCCCchHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVARGEFPDDDDFG-SYDGYV-ITGSCNDAHGNDVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~~~~p~~~~~~-~~d~ii-i~G~~~~~~~~~~~~~~ 80 (126)
.||.++-++...... ..+..++++ .+..+.++...+-.. ....+. +-|.+| ++-|..+ .+
T Consensus 35 ~~I~i~G~G~S~~~a--------~~~~~~l~~~~g~~~~~~~~se~~~-~~~~~~~~~dlvI~iS~SG~T--------~e 97 (352)
T 3g68_A 35 KKIIITGSGTSYHSG--------VQVQPYLQNLLDIDVVKMYPFMITE-DTFKFDNENTLVVGVSQGGSS--------YS 97 (352)
T ss_dssp SEEEEECSHHHHHHH--------HHHHHHHHHHCSSEEEEECGGGCCG-GGGSSCCTTEEEEEEESSSCC--------HH
T ss_pred CEEEEEEeehHHHHH--------HHHHHHHHHHhCCcEEEEcchhhhh-cccCCCCCCcEEEEEeCCCCC--------HH
Confidence 467777665542211 123445555 578877765432211 111223 334333 3433221 34
Q ss_pred HHHHHHHHHhcCCcEEEEch
Q 033165 81 LIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~ 100 (126)
..+.++.+.+.+.++++||.
T Consensus 98 ~l~a~~~ak~~ga~~iaIT~ 117 (352)
T 3g68_A 98 TYNAMKLAEDKGCKIASMAG 117 (352)
T ss_dssp HHHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHHCCCCEEEEeC
Confidence 55667777778999999984
No 330
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.88 E-value=53 Score=19.90 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=20.8
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC--eEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE--TWDVF 43 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~~ 43 (126)
|.++||+|++.+.. +...+.+.|+..|. .+..+
T Consensus 4 ~~~~~iLivdd~~~----------~~~~l~~~L~~~g~~~~v~~~ 38 (149)
T 1k66_A 4 NATQPLLVVEDSDE----------DFSTFQRLLQREGVVNPIYRC 38 (149)
T ss_dssp CTTSCEEEECCCHH----------HHHHHHHHHHHTTBCSCEEEE
T ss_pred CCCccEEEEECCHH----------HHHHHHHHHHHcCCCceEEEE
Confidence 45678999865443 22346778888887 44443
No 331
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=27.83 E-value=86 Score=22.69 Aligned_cols=58 Identities=9% Similarity=0.075 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
.+|+++..+..++.. ..+..-+.+.+++.|.++.++....+ +.. +. -..+||||+.+.
T Consensus 67 ~~Igvi~~~~~~~~~----~~~~~gi~~~a~~~g~~~~~~~~~~~--~~~~~~~~~~l~~~~vdgiI~~~~ 131 (348)
T 3bil_A 67 NTIGVIVPSLINHYF----AAMVTEIQSTASKAGLATIITNSNED--ATTMSGSLEFLTSHGVDGIICVPN 131 (348)
T ss_dssp -CEEEEESCSSSHHH----HHHHHHHHHHHHHTTCCEEEEECTTC--HHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CEEEEEeCCCCCcHH----HHHHHHHHHHHHHcCCEEEEEeCCCC--HHHHHHHHHHHHhCCCCEEEEeCC
Confidence 468888765544321 12333455666778988887654321 100 01 147999999865
No 332
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=27.44 E-value=1.2e+02 Score=20.53 Aligned_cols=38 Identities=8% Similarity=0.084 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh--------C--CCeEEEEEccC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE--------E--GETWDVFHVAR 47 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~--------~--g~~~~~~~~~~ 47 (126)
|.||+++...+.. ++++..+.+.+.+ . +.+++++++.+
T Consensus 11 ~~~il~i~GS~r~-------~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d 58 (191)
T 3k1y_A 11 MRTLAVISAGLST-------PSSTRQIADSISEAVTAAVSARGEALSVSTIELSE 58 (191)
T ss_dssp SEEEEEEECCCSS-------SCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred hceEEEEECCCCC-------CCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHh
Confidence 6789999877654 3566656554432 3 78899988763
No 333
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=27.00 E-value=70 Score=19.24 Aligned_cols=33 Identities=12% Similarity=0.021 Sum_probs=20.1
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|.++||+|++.+.. +...+.+.|+..|.++..+
T Consensus 13 ~~~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 45 (138)
T 2b4a_A 13 MQPFRVTLVEDEPS----------HATLIQYHLNQLGAEVTVH 45 (138)
T ss_dssp -CCCEEEEECSCHH----------HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCeEEEECCCHH----------HHHHHHHHHHHcCCEEEEe
Confidence 34678888865442 2234677787778765543
No 334
>3vot_A L-amino acid ligase, BL00235; ATP-grAsp motif, ATP-binding; HET: ADP PG4; 1.80A {Bacillus licheniformis}
Probab=26.75 E-value=2e+02 Score=21.50 Aligned_cols=53 Identities=15% Similarity=0.191 Sum_probs=30.9
Q ss_pred CCC--CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 1 MGG--KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 1 M~~--~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
|+. +|++|+..+...+ ++.+..++.|.++.++....+..+. .+...|..+...
T Consensus 1 M~~~~k~l~Il~~~~~~~-----------~i~~aa~~lG~~vv~v~~~~~~~~~--~~~~~d~~~~~~ 55 (425)
T 3vot_A 1 MTKRNKNLAIICQNKHLP-----------FIFEEAERLGLKVTFFYNSAEDFPG--NLPAVERCVPLP 55 (425)
T ss_dssp -CCCCCEEEEECCCTTCC-----------HHHHHHHHTTCEEEEEEETTSCCCC--SCTTEEEEEEEC
T ss_pred CCCCCcEEEEECCChhHH-----------HHHHHHHHCCCEEEEEECCCccccc--CHhhccEEEecC
Confidence 554 5777775544322 2556778899998877654333222 345566666553
No 335
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold, cyanogenesis; 2.50A {Arabidopsis thaliana} SCOP: c.69.1.0
Probab=26.73 E-value=1.4e+02 Score=19.54 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHh-cCCcEEEEchHHHHHHHHhC
Q 033165 76 VWICKLIALLKQLDS-LRKKVLGICFGHQVRAITVF 110 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~-~~~PvlGIC~G~Q~la~~~G 110 (126)
.+...+.++++.+-. ..+-++|.++|..+...+..
T Consensus 57 ~~~~~l~~~l~~l~~~~~~~lvGhS~Gg~~a~~~a~ 92 (258)
T 3dqz_A 57 EYSKPLIETLKSLPENEEVILVGFSFGGINIALAAD 92 (258)
T ss_dssp HHHHHHHHHHHTSCTTCCEEEEEETTHHHHHHHHHT
T ss_pred HhHHHHHHHHHHhcccCceEEEEeChhHHHHHHHHH
Confidence 455556666655422 34568999999987666543
No 336
>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3}
Probab=26.73 E-value=1.2e+02 Score=22.55 Aligned_cols=89 Identities=6% Similarity=-0.097 Sum_probs=44.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEEEEEccC-CCCCCCCCCCCcCEEE-EcCCCCCCCCCchHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWDVFHVAR-GEFPDDDDFGSYDGYV-ITGSCNDAHGNDVWICK 80 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~~~~-~~~p~~~~~~~~d~ii-i~G~~~~~~~~~~~~~~ 80 (126)
.||.++-++...... ..+..++++ .|..+..+.+.. .++..+ .+.+-|.+| ++-|..+ .+
T Consensus 44 ~~I~i~G~G~S~~aa--------~~~~~~l~~~~g~~~~~~~~~~~~~~~~~-~~~~~dlvI~iS~SG~T--------~e 106 (344)
T 3fj1_A 44 SFVATVARGSSDHVC--------TYLSYAAELLLGLPVASLGPSVASVYDAR-LRLDRALCLAVSQSGKS--------PD 106 (344)
T ss_dssp SEEEEECCTHHHHHH--------HHHHHHHHHHHCCCEEECCTHHHHTTCCC-CCCTTEEEEEEESSSCC--------HH
T ss_pred CEEEEEEechHHHHH--------HHHHHHHHHHhCCcEEEecchHHhhhccc-CCCCCcEEEEEcCCCCC--------HH
Confidence 467777666643211 122344444 477776643221 111111 233344333 3433221 34
Q ss_pred HHHHHHHHHhcCCcEEEEch-HHHHHHHHh
Q 033165 81 LIALLKQLDSLRKKVLGICF-GHQVRAITV 109 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC~-G~Q~la~~~ 109 (126)
..+.++.+.+.+.++++||. .---|++..
T Consensus 107 ~l~a~~~ak~~Ga~~iaIT~~~~S~La~~a 136 (344)
T 3fj1_A 107 IVAMTRNAGRDGALCVALTNDAASPLAGVS 136 (344)
T ss_dssp HHHHHHHHHHTTCEEEEEESCTTSHHHHTS
T ss_pred HHHHHHHHHHCCCcEEEEECCCCChHHHhc
Confidence 55667777778999999984 344455543
No 337
>3l5o_A Uncharacterized protein from DUF364 family; RARE metals, siderophores, adenosyl binding site; 2.01A {Desulfitobacterium hafniense}
Probab=26.71 E-value=30 Score=25.46 Aligned_cols=50 Identities=20% Similarity=0.118 Sum_probs=30.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccC--CCCCCC---CCCCCcCEEEEcCCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVAR--GEFPDD---DDFGSYDGYVITGSC 68 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~--~~~p~~---~~~~~~d~iii~G~~ 68 (126)
+||+++-+-+. +. .+.+.+.++.++.... +++|.. .-+.+.|.++|+|+.
T Consensus 142 ~kV~vIG~fP~--------------i~-~~~~~~~~l~V~E~~p~~g~~p~~~~~~~lp~~D~viiTgst 196 (270)
T 3l5o_A 142 KKVGVVGHFPH--------------LE-SLLEPICDLSILEWSPEEGDYPLPASEFILPECDYVYITCAS 196 (270)
T ss_dssp SEEEEESCCTT--------------HH-HHHTTTSEEEEEESSCCTTCEEGGGHHHHGGGCSEEEEETHH
T ss_pred CEEEEECCchh--------------HH-HHHhcCCCEEEEECCCCCCCCChhHHHHhhccCCEEEEEeeh
Confidence 68888865421 23 3445677888886432 223321 124789999999984
No 338
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=26.62 E-value=64 Score=19.91 Aligned_cols=31 Identities=6% Similarity=-0.076 Sum_probs=18.2
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
.++||+|++.+.. +...+...|+. +.++..+
T Consensus 3 ~~~~ILivdd~~~----------~~~~l~~~L~~-~~~v~~~ 33 (151)
T 3kcn_A 3 LNERILLVDDDYS----------LLNTLKRNLSF-DFEVTTC 33 (151)
T ss_dssp CCCEEEEECSCHH----------HHHHHHHHHTT-TSEEEEE
T ss_pred CCCeEEEEeCCHH----------HHHHHHHHhcc-CceEEEe
Confidence 3579999965443 22346677754 6655543
No 339
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Probab=26.50 E-value=1.8e+02 Score=20.96 Aligned_cols=12 Identities=8% Similarity=-0.108 Sum_probs=8.2
Q ss_pred CCCCeEEEEEcC
Q 033165 1 MGGKKFAVLLCA 12 (126)
Q Consensus 1 M~~~ki~Il~~~ 12 (126)
|.++||+|+-++
T Consensus 7 M~~irv~IIG~G 18 (304)
T 3bio_A 7 DKKIRAAIVGYG 18 (304)
T ss_dssp -CCEEEEEECCS
T ss_pred CCCCEEEEECCh
Confidence 446799999653
No 340
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...
Probab=26.20 E-value=23 Score=26.63 Aligned_cols=48 Identities=19% Similarity=0.278 Sum_probs=30.6
Q ss_pred CCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHh------cCCcEEEEchHHHHHHHHhCC
Q 033165 57 GSYDGYVITGSCNDAHGNDVWICKLIALLKQLDS------LRKKVLGICFGHQVRAITVFS 111 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~------~~~PvlGIC~G~Q~la~~~Gg 111 (126)
.+.+.|++.||... .| .+.+.+++.+. ..-|-..++.|.-+.+..+.+
T Consensus 350 ~~i~~VvLvGG~s~----~p---~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~~ 403 (404)
T 3i33_A 350 GQIQEIVLVGGSTR----IP---KIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403 (404)
T ss_dssp GGCCEEEEESGGGG----CH---HHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHHHHHC-
T ss_pred hhCCEEEEECCccc----cH---HHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHHHHhcC
Confidence 46799999999543 23 34444555441 124667789999888877654
No 341
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=26.08 E-value=1.5e+02 Score=21.70 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=23.1
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEE
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
...|||++.|+...... +.+...++.+...+....++|++.
T Consensus 49 ~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 90 (304)
T 3cpr_A 49 KGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIA 90 (304)
T ss_dssp TTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEe
Confidence 36899999998654422 112223344444444445688763
No 342
>1zxx_A 6-phosphofructokinase; allosteric regulation, lactobacillus BU transferase; 1.85A {Lactobacillus delbrueckii subsp}
Probab=26.00 E-value=1e+02 Score=23.12 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=28.7
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHH
Q 033165 61 GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAI 107 (126)
Q Consensus 61 ~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~ 107 (126)
+|+-+||+.+.-. ...+.+++.+...+.-++||-.|.+=|..
T Consensus 5 ~IltsGGdapGmN-----aair~vv~~a~~~g~~v~Gi~~G~~GL~~ 46 (319)
T 1zxx_A 5 GILTSGGDAPGMN-----AAVRAVTRVAIANGLEVFGIRYGFAGLVA 46 (319)
T ss_dssp EEEECSSCCTTHH-----HHHHHHHHHHHTTTCEEEEECTHHHHHHH
T ss_pred EEEccCCCchhHH-----HHHHHHHHHHHHCCCEEEEEccChHHHcC
Confidence 5666788643311 22455666666678899999999998864
No 343
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=25.97 E-value=72 Score=19.69 Aligned_cols=81 Identities=10% Similarity=-0.070 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
++||+|++-+.. +...+.+.|+..|.++..+.-....+... .-..+|.||+-=. ....+. ..+.
T Consensus 14 ~~~ILivdd~~~----------~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-~~~~~dlvi~D~~-l~~~~g----~~~~ 77 (153)
T 3hv2_A 14 RPEILLVDSQEV----------ILQRLQQLLSPLPYTLHFARDATQALQLL-ASREVDLVISAAH-LPQMDG----PTLL 77 (153)
T ss_dssp CCEEEEECSCHH----------HHHHHHHHHTTSSCEEEEESSHHHHHHHH-HHSCCSEEEEESC-CSSSCH----HHHH
T ss_pred CceEEEECCCHH----------HHHHHHHHhcccCcEEEEECCHHHHHHHH-HcCCCCEEEEeCC-CCcCcH----HHHH
Confidence 468888865442 23357788888787655432110000000 0135787777322 111111 1233
Q ss_pred HHHHHHHhcCCcEEEEch
Q 033165 83 ALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~ 100 (126)
+.+++. ....|++-+.-
T Consensus 78 ~~l~~~-~~~~~ii~~s~ 94 (153)
T 3hv2_A 78 ARIHQQ-YPSTTRILLTG 94 (153)
T ss_dssp HHHHHH-CTTSEEEEECC
T ss_pred HHHHhH-CCCCeEEEEEC
Confidence 334432 24688887763
No 344
>3tqt_A D-alanine--D-alanine ligase; cell envelope; 1.88A {Coxiella burnetii}
Probab=25.86 E-value=99 Score=23.28 Aligned_cols=44 Identities=14% Similarity=0.009 Sum_probs=27.7
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|.++||+||--+...+.-.+-. -...+.+.|.+.+.++..+.+.
T Consensus 2 ~~~~~v~vl~GG~S~E~evSl~--Sa~~v~~~l~~~~~~v~~i~i~ 45 (372)
T 3tqt_A 2 AEKLHISVLCGGQSTEHEISIQ--SAKNIVNTLDAAKYLISVIFID 45 (372)
T ss_dssp CCSEEEEEEEECSSTTHHHHHH--HHHHHHHHSCTTTEEEEEEEEC
T ss_pred CCCCEEEEEeccCCCccHhHHH--HHHHHHHHHhhcCceEEEEEEC
Confidence 4567999999888776433221 1234556677777777666654
No 345
>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9
Probab=25.72 E-value=64 Score=22.67 Aligned_cols=48 Identities=15% Similarity=0.010 Sum_probs=29.4
Q ss_pred CCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHH-HhcCCcEEEEchHHHHHHHH
Q 033165 56 FGSYDGYVITGSCNDAHGNDVWICKLIALLKQL-DSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 56 ~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~-~~~~~PvlGIC~G~Q~la~~ 108 (126)
+.+.|+|.++=||.+... ++--....+.+ ...++|++||+- ++.++..
T Consensus 64 ~~dld~Iav~~GPGsfTG----lRiG~~~Ak~La~~~~iPl~gVs~-l~a~a~~ 112 (218)
T 2a6a_A 64 VKDLDVVGVGIGPGGLTG----LRVGIATVVGLVSPYDIPVAPLNS-FEMTAKS 112 (218)
T ss_dssp GGGCSEEEEECCSSCHHH----HHHHHHHHHHHHGGGTCCEEEECH-HHHHHHT
T ss_pred HHHCCEEEEEcCCCchHh----HHHHHHHHHHHHHHcCCCEEEeCc-HHHHHhh
Confidence 457899999999865422 11112223332 235899999986 5555543
No 346
>2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus}
Probab=25.67 E-value=51 Score=23.37 Aligned_cols=14 Identities=14% Similarity=0.176 Sum_probs=12.3
Q ss_pred CCCCeEEEEEcCCC
Q 033165 1 MGGKKFAVLLCAED 14 (126)
Q Consensus 1 M~~~ki~Il~~~~~ 14 (126)
|.++||+++|....
T Consensus 1 M~~~~va~vQ~~~~ 14 (276)
T 2w1v_A 1 MSTFRLALIQLQVS 14 (276)
T ss_dssp CCEEEEEEEECCCC
T ss_pred CCccEEEEEecccc
Confidence 88899999999855
No 347
>3n8k_A 3-dehydroquinate dehydratase; shikimate pathway, lyase, aromatic amino acid biosynthesis, drug target, citrazinic acid, S genomics; HET: D1X; 2.25A {Mycobacterium tuberculosis} PDB: 3n59_A*
Probab=25.65 E-value=54 Score=22.58 Aligned_cols=69 Identities=16% Similarity=0.071 Sum_probs=32.9
Q ss_pred CCCCeEEEEEcCCCchH---HHHhhCC--HH---HHHHHHHhhCCCeEEEEEccC-CCCCC-C-CCCCCcCEEEEcCCCC
Q 033165 1 MGGKKFAVLLCAEDSEY---VKKKYGG--YF---GVFVRMLAEEGETWDVFHVAR-GEFPD-D-DDFGSYDGYVITGSCN 69 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~---~~~~~~~--~~---~~~~~~l~~~g~~~~~~~~~~-~~~p~-~-~~~~~~d~iii~G~~~ 69 (126)
|+.|||+||.--.-+-. --+-||+ +. ..+.+...+.|.+++.+.-.. +++-+ . +..+++|+|||=.|..
T Consensus 26 m~~M~IlVLNGPNLNlLG~REP~iYG~~TL~dI~~~l~~~a~~~G~~l~~~QSN~EGeLId~Ih~A~~~~dgIIINPgAy 105 (172)
T 3n8k_A 26 MSELIVNVINGPNLGRLGRREPAVYGGTTHDELVALIEREAAELGLKAVVRQSDSEAQLLDWIHQAADAAEPVILNAGGL 105 (172)
T ss_dssp ---CEEEEEECTTGGGTTTSCHHHHCSCCHHHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHHHHHTCCEEEECGGG
T ss_pred cccCEEEEEcCCCccccCCCCCCcCCCCCHHHHHHHHHHHHHHcCCEEEEEecCCHHHHHHHHHHhhhcCcEEEECcchh
Confidence 67789998864321110 0112442 33 344455556788888876321 11100 0 0114589999965543
No 348
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=25.60 E-value=80 Score=20.05 Aligned_cols=41 Identities=10% Similarity=0.052 Sum_probs=25.6
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+..+||++||.... +.+ ++.+.+.++|++-.=+..--.+..
T Consensus 74 ~~~~iIlt~g~~~~-------~~i---~~~A~~~~ipvl~t~~~T~~~~~~ 114 (139)
T 2ioj_A 74 NVRCLILTGNLEPV-------QLV---LTKAEERGVPVILTGHDTLTAVSR 114 (139)
T ss_dssp TEEEEEEETTCCCC-------HHH---HHHHHHHTCCEEECSSCHHHHHHH
T ss_pred CCcEEEEcCCCCCC-------HHH---HHHHHHCCCeEEEECCCHHHHHHH
Confidence 67899999995321 112 233445699999877665544443
No 349
>1gsa_A Glutathione synthetase; ligase; HET: ADP GSH; 2.00A {Escherichia coli} SCOP: c.30.1.3 d.142.1.1 PDB: 1gsh_A 2glt_A 1glv_A
Probab=25.50 E-value=56 Score=23.04 Aligned_cols=40 Identities=5% Similarity=-0.043 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|||+|+..+.... +-.+..+..+.+.+++.|.++.++++.
T Consensus 2 m~i~il~~~~~~~---~~~~~s~~~l~~a~~~~G~~v~~~d~~ 41 (316)
T 1gsa_A 2 IKLGIVMDPIANI---NIKKDSSFAMLLEAQRRGYELHYMEMG 41 (316)
T ss_dssp CEEEEECSCGGGC---CTTTCHHHHHHHHHHHTTCEEEEECGG
T ss_pred ceEEEEeCcHHhC---CcCCChHHHHHHHHHHCCCEEEEEchh
Confidence 6999997764321 112234566788899999988777643
No 350
>2q2e_A Type II DNA topoisomerase VI subunit A; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=25.39 E-value=90 Score=23.77 Aligned_cols=48 Identities=10% Similarity=0.179 Sum_probs=33.1
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhc-CCcEEEEc----hHHHHHHHHhCCc
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSL-RKKVLGIC----FGHQVRAITVFSS 112 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~-~~PvlGIC----~G~Q~la~~~Gg~ 112 (126)
.++.++|+|..... ...+.+++.+.+. +.|+++.+ +|.+++...-.|.
T Consensus 218 ~~~~ilIt~kG~Pd-------~atR~~L~~L~~~~~~pv~~l~D~Dp~Gi~I~~tyk~GS 270 (369)
T 2q2e_A 218 AYNAILVHLKGQPA-------RSTRRIIKRMNEELGIPVAVFTDGDPWSYRIYASVAYGA 270 (369)
T ss_dssp TTCCCEEECCSSCC-------HHHHHHHHHHTTSSCCCEEEECCSSHHHHTTTHHHHSCC
T ss_pred cCCEEEEECCCCCC-------HHHHHHHHHHHHhcCCcEEEEecCChhHHHHHHHHhccc
Confidence 45778888775432 2245666666554 89999998 9999998654443
No 351
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=25.36 E-value=79 Score=20.65 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=26.0
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITG 66 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G 66 (126)
|++|+.....- +++. ....+.+.++.. .++++++... ....++.+||.||+.-
T Consensus 1 ki~I~Y~S~tG-nT~~----vA~~ia~~l~~~--~~~~~~~~~~--~~~~~l~~~d~ii~g~ 53 (173)
T 2fcr_A 1 KIGIFFSTSTG-NTTE----VADFIGKTLGAK--ADAPIDVDDV--TDPQALKDYDLLFLGA 53 (173)
T ss_dssp CEEEEECCSSS-HHHH----HHHHHHHHHGGG--BCCCEEGGGC--SCGGGGGGCSEEEEEE
T ss_pred CEEEEEECCCc-hHHH----HHHHHHHHhccC--CcEEEehhhc--CChhHHccCCEEEEEE
Confidence 56677654432 2211 223344444332 4556665432 0123577899988853
No 352
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=25.10 E-value=63 Score=23.62 Aligned_cols=41 Identities=24% Similarity=0.152 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCchHHHHhhCC---HHHHHHHHHhhCCCeEEEEEccC
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGG---YFGVFVRMLAEEGETWDVFHVAR 47 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~---~~~~~~~~l~~~g~~~~~~~~~~ 47 (126)
.|||+++-....+. ..|. +...+.+.|.+.|.+++++.+..
T Consensus 2 ~MkIl~v~~~~~p~----~~gG~~~~~~~la~~L~~~G~~V~v~~~~~ 45 (439)
T 3fro_A 2 HMKVLLLGFEFLPV----KVGGLAEALTAISEALASLGHEVLVFTPSH 45 (439)
T ss_dssp CCEEEEECSCCTTS----CSSSHHHHHHHHHHHHHHTTCEEEEEEECT
T ss_pred ceEEEEEecccCCc----ccCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 57999997654320 1122 55667788889999999998653
No 353
>2ixd_A LMBE-related protein; hexamer, deacetylase, rossman fold, zinc-dependent metalloenzyme, hydrolase; 1.8A {Bacillus cereus}
Probab=25.09 E-value=1.3e+02 Score=21.31 Aligned_cols=43 Identities=12% Similarity=0.226 Sum_probs=29.2
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCC
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGE 49 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 49 (126)
|+.++++++-..++++..- ....+.++. +.|.++.++.+..++
T Consensus 1 ~~~~~vL~v~aHPDDe~l~-----~Ggtia~~~-~~G~~V~vv~lT~G~ 43 (242)
T 2ixd_A 1 MSGLHILAFGAHADDVEIG-----MAGTIAKYT-KQGYEVGICDLTEAD 43 (242)
T ss_dssp -CCCSEEEEESSTTHHHHH-----HHHHHHHHH-HTTCCEEEEEEECCT
T ss_pred CCCccEEEEEeCCChHHHh-----HHHHHHHHH-HCCCeEEEEEEcCCC
Confidence 7888999999888865421 234554444 578999888877554
No 354
>1pfk_A Phosphofructokinase; transferase(phosphotransferase); HET: FBP ADP; 2.40A {Escherichia coli} SCOP: c.89.1.1 PDB: 2pfk_A
Probab=24.92 E-value=1e+02 Score=23.14 Aligned_cols=42 Identities=14% Similarity=0.112 Sum_probs=28.5
Q ss_pred EEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHHHHHHH
Q 033165 61 GYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGHQVRAI 107 (126)
Q Consensus 61 ~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la~ 107 (126)
+|+-+||+.+.-. ..++.+++.+...+.-++||-.|.+=|..
T Consensus 6 ~IltsGGdapGmN-----aair~vv~~a~~~g~~v~Gi~~G~~GL~~ 47 (320)
T 1pfk_A 6 GVLTSGGDAPGMN-----AAIRGVVRSALTEGLEVMGIYDGYLGLYE 47 (320)
T ss_dssp EEEECSSCCTTHH-----HHHHHHHHHHHHTTCEEEEESTHHHHHHT
T ss_pred EEEccCCCchhHH-----HHHHHHHHHHHHCCCEEEEEecChHHhcC
Confidence 5666788643311 22455666666678899999999998853
No 355
>1ivn_A Thioesterase I; hydrolase, protease; 1.90A {Escherichia coli} SCOP: c.23.10.5 PDB: 1u8u_A* 1j00_A* 1jrl_A 1v2g_A*
Probab=24.86 E-value=1.4e+02 Score=19.12 Aligned_cols=72 Identities=8% Similarity=-0.038 Sum_probs=39.3
Q ss_pred CHHHHHHHHHhhCCCeEEEEEccCCCCCC------C-CCC--CCcCEEEEcCCCCCCCCC---chHHHHHHHHHHHHHhc
Q 033165 24 GYFGVFVRMLAEEGETWDVFHVARGEFPD------D-DDF--GSYDGYVITGSCNDAHGN---DVWICKLIALLKQLDSL 91 (126)
Q Consensus 24 ~~~~~~~~~l~~~g~~~~~~~~~~~~~p~------~-~~~--~~~d~iii~G~~~~~~~~---~~~~~~~~~~i~~~~~~ 91 (126)
+|...+.+.|.. ++++++........ . ..+ .++|.|+|..|..+.... ..+...+.++++.+.+.
T Consensus 22 ~~~~~l~~~l~~---~~~v~n~g~~G~~~~~~~~~~~~~~~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~~~~~ 98 (190)
T 1ivn_A 22 AWPALLNDKWQS---KTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAA 98 (190)
T ss_dssp SHHHHHHHHC-C---CEEEEECCCTTCCHHHHHHHHHHHHHHHCCSEEEEECCTTTTSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHhcc---CcEEEecCCCCchHHHHHHHHHHHHHhcCCCEEEEEeeccccccCCCHHHHHHHHHHHHHHHHHc
Confidence 577777766643 25665543111000 0 001 257999998776655321 24666677777777666
Q ss_pred CCcEEEE
Q 033165 92 RKKVLGI 98 (126)
Q Consensus 92 ~~PvlGI 98 (126)
+.+++-+
T Consensus 99 ~~~vil~ 105 (190)
T 1ivn_A 99 NAEPLLM 105 (190)
T ss_dssp TCEEEEE
T ss_pred CCCEEEE
Confidence 6665544
No 356
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=24.71 E-value=73 Score=18.87 Aligned_cols=31 Identities=13% Similarity=0.116 Sum_probs=19.3
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
.+||+|++.+.. +...+.+.|++.|.++..+
T Consensus 6 ~~~ilivdd~~~----------~~~~l~~~L~~~g~~v~~~ 36 (132)
T 3lte_A 6 SKRILVVDDDQA----------MAAAIERVLKRDHWQVEIA 36 (132)
T ss_dssp -CEEEEECSCHH----------HHHHHHHHHHHTTCEEEEE
T ss_pred CccEEEEECCHH----------HHHHHHHHHHHCCcEEEEe
Confidence 368888865443 2234677888878766544
No 357
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=24.27 E-value=1.8e+02 Score=21.05 Aligned_cols=41 Identities=24% Similarity=0.165 Sum_probs=22.4
Q ss_pred CcCEEEEcCCCCCCCCCc-hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 58 SYDGYVITGSCNDAHGND-VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~-~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
+.|.||++|=-.+..... .....+.++++++.+.++|++.|
T Consensus 40 ~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~~l~~~~~~v~~v 81 (333)
T 1ii7_A 40 NVDFILIAGDLFHSSRPSPGTLKKAIALLQIPKEHSIPVFAI 81 (333)
T ss_dssp TCSEEEEESCSBSSSSCCHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEe
Confidence 467788877543221111 12334455666655557888776
No 358
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=24.25 E-value=83 Score=18.10 Aligned_cols=31 Identities=23% Similarity=0.143 Sum_probs=19.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|+||+|++.+.. +...+...|+..|.++...
T Consensus 1 m~~ilivdd~~~----------~~~~l~~~l~~~~~~v~~~ 31 (116)
T 3a10_A 1 MKRILVVDDEPN----------IRELLKEELQEEGYEIDTA 31 (116)
T ss_dssp CCEEEEECSCHH----------HHHHHHHHHHHTTCEEEEE
T ss_pred CcEEEEEeCCHH----------HHHHHHHHHHHCCCEEEEe
Confidence 358888865443 2234667777778765533
No 359
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=23.75 E-value=1.4e+02 Score=18.64 Aligned_cols=72 Identities=17% Similarity=0.365 Sum_probs=43.6
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCC-C-CCCCCCcCEEEEcCCCCCCCCCchHHHHH
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFP-D-DDDFGSYDGYVITGSCNDAHGNDVWICKL 81 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p-~-~~~~~~~d~iii~G~~~~~~~~~~~~~~~ 81 (126)
|.|.|+...++.+.+++ |.+.+++.|+.++.++... ++. + .+-..+|.+-|+.= +-|+.+|.++.
T Consensus 1 mnivivvfstdeetlrk--------fkdiikkngfkvrtvrspq-elkdsieelvkkynativvv----vvddkewaeka 67 (134)
T 2l69_A 1 MNIVIVVFSTDEETLRK--------FKDIIKKNGFKVRTVRSPQ-ELKDSIEELVKKYNATIVVV----VVDDKEWAEKA 67 (134)
T ss_dssp CCEEEEECCCCHHHHHH--------HHHHHHHTTCEEEEECSHH-HHHHHHHHHTTCCCCEEEEE----ECSSHHHHHHH
T ss_pred CcEEEEEEeCCHHHHHH--------HHHHHHhcCceEEEecCHH-HHHHHHHHHHHHhCCeEEEE----EEccHHHHHHH
Confidence 35677777777665554 6777889999998886321 110 0 01235676655431 23566888877
Q ss_pred HHHHHHH
Q 033165 82 IALLKQL 88 (126)
Q Consensus 82 ~~~i~~~ 88 (126)
..+++.+
T Consensus 68 irfvksl 74 (134)
T 2l69_A 68 IRFVKSL 74 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7766654
No 360
>3npg_A Uncharacterized DUF364 family protein; protein with unknown function from DUF364 family, structural genomics; 2.70A {Pyrococcus horikoshii}
Probab=23.61 E-value=29 Score=25.13 Aligned_cols=39 Identities=28% Similarity=0.434 Sum_probs=22.9
Q ss_pred HHHHHhhCCCeEEEEEccCC-----CCCCC-C--CCCCcCEEEEcCCC
Q 033165 29 FVRMLAEEGETWDVFHVARG-----EFPDD-D--DFGSYDGYVITGSC 68 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~-----~~p~~-~--~~~~~d~iii~G~~ 68 (126)
+.+.|.+. .++.++..... .+|+. + -+...|.++++|+.
T Consensus 128 l~~~l~~~-~~v~V~d~~p~~~~~~~~~~~~e~~~l~~~D~v~iTGsT 174 (249)
T 3npg_A 128 VVRTLKEK-YEVYVFERNMKLWDRDTYSDTLEYHILPEVDGIIASASC 174 (249)
T ss_dssp HHHHHTTT-SEEEEECCSGGGCCSSEECGGGHHHHGGGCSEEEEETTH
T ss_pred HHHHHhcc-CCEEEEECCCcccCCCCCChhHHHhhhccCCEEEEEeee
Confidence 44555555 78887764321 11211 0 24579999999995
No 361
>2o2g_A Dienelactone hydrolase; YP_324580.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.92A {Anabaena variabilis}
Probab=23.53 E-value=1.1e+02 Score=19.57 Aligned_cols=34 Identities=12% Similarity=0.174 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHhc------CCcEEEEchHHHHHHHHh
Q 033165 76 VWICKLIALLKQLDSL------RKKVLGICFGHQVRAITV 109 (126)
Q Consensus 76 ~~~~~~~~~i~~~~~~------~~PvlGIC~G~Q~la~~~ 109 (126)
.+...+.++++.+... .+-++|.|+|..+...+.
T Consensus 93 ~~~~d~~~~i~~l~~~~~~~~~~i~l~G~S~Gg~~a~~~a 132 (223)
T 2o2g_A 93 LLASRLVGATDWLTHNPDTQHLKVGYFGASTGGGAALVAA 132 (223)
T ss_dssp HHHHHHHHHHHHHHHCTTTTTSEEEEEEETHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCCCcEEEEEeCccHHHHHHHH
Confidence 3455566666665544 456899999988776643
No 362
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=23.46 E-value=1.5e+02 Score=22.06 Aligned_cols=41 Identities=15% Similarity=0.028 Sum_probs=23.0
Q ss_pred CcCEEEEcCCCCCCCCCc-hHHHHHHHHHHHHHhcCCcEEEE
Q 033165 58 SYDGYVITGSCNDAHGND-VWICKLIALLKQLDSLRKKVLGI 98 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~-~~~~~~~~~i~~~~~~~~PvlGI 98 (126)
++|.||++|=-.+..... .....+.++++++.+.++|++.|
T Consensus 60 ~~D~VliaGDl~d~~~p~~~~~~~~~~~l~~L~~~~~pv~~v 101 (386)
T 3av0_A 60 KPDVVLHSGDLFNDLRPPVKALRIAMQAFKKLHENNIKVYIV 101 (386)
T ss_dssp CCSEEEECSCSBSSSSCCHHHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 578888887532221111 12334556666665557888776
No 363
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=23.41 E-value=75 Score=18.84 Aligned_cols=31 Identities=6% Similarity=-0.150 Sum_probs=17.3
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
.++||+|++.+.. +...+...|+ .+.++..+
T Consensus 3 ~~~~ilivdd~~~----------~~~~l~~~l~-~~~~v~~~ 33 (133)
T 3nhm_A 3 LKPKVLIVENSWT----------MRETLRLLLS-GEFDCTTA 33 (133)
T ss_dssp --CEEEEECSCHH----------HHHHHHHHHT-TTSEEEEE
T ss_pred CCCEEEEEcCCHH----------HHHHHHHHHh-CCcEEEEE
Confidence 3578999865432 1234666776 66665543
No 364
>3ivz_A Nitrilase; alpha-beta sandwich, hydrolase; 1.57A {Pyrococcus abyssi} SCOP: d.160.1.2 PDB: 3iw3_A 3ki8_A 3klc_A 1j31_A
Probab=23.39 E-value=75 Score=22.29 Aligned_cols=20 Identities=20% Similarity=0.036 Sum_probs=14.0
Q ss_pred CCeEEEEEcCCCchHHHHhh
Q 033165 3 GKKFAVLLCAEDSEYVKKKY 22 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~ 22 (126)
|+||+++|......+...|.
T Consensus 1 M~rva~~Q~~~~~~d~~~N~ 20 (262)
T 3ivz_A 1 MVKVAYVQMNPQILEPDKNY 20 (262)
T ss_dssp -CEEEEEECCCCTTCHHHHH
T ss_pred CeEEEEEeccCCCCCHHHHH
Confidence 58999999988754444443
No 365
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=23.31 E-value=97 Score=18.51 Aligned_cols=30 Identities=23% Similarity=0.016 Sum_probs=18.5
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV 42 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 42 (126)
.+||+|++-+... ...+...|+..|.++..
T Consensus 7 ~~~ILivdd~~~~----------~~~l~~~L~~~g~~v~~ 36 (136)
T 1dcf_A 7 GLKVLVMDENGVS----------RMVTKGLLVHLGCEVTT 36 (136)
T ss_dssp TCEEEEECSCHHH----------HHHHHHHHHHTTCEEEE
T ss_pred CCeEEEEeCCHHH----------HHHHHHHHHHcCCeEEE
Confidence 4688888554321 23466777777876553
No 366
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=23.15 E-value=54 Score=19.71 Aligned_cols=81 Identities=10% Similarity=-0.169 Sum_probs=39.1
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE-EEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHH
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV-FHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICK 80 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~ 80 (126)
.++||+|++.+.. +...+.+.|+..|+++.. +.-....+... .-..+|.+|+-=.-.+..+. .+
T Consensus 8 ~~~~iLivdd~~~----------~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~-~~~~~dlii~d~~~~~~~~g----~~ 72 (140)
T 3cg0_A 8 DLPGVLIVEDGRL----------AAATLRIQLESLGYDVLGVFDNGEEAVRCA-PDLRPDIALVDIMLCGALDG----VE 72 (140)
T ss_dssp CCCEEEEECCBHH----------HHHHHHHHHHHHTCEEEEEESSHHHHHHHH-HHHCCSEEEEESSCCSSSCH----HH
T ss_pred CCceEEEEECCHH----------HHHHHHHHHHHCCCeeEEEECCHHHHHHHH-HhCCCCEEEEecCCCCCCCH----HH
Confidence 3578999865443 223467777777776652 32110000000 01357888774221000111 12
Q ss_pred HHHHHHHHHhcCCcEEEEc
Q 033165 81 LIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 81 ~~~~i~~~~~~~~PvlGIC 99 (126)
+.+.+++. ...|++-+.
T Consensus 73 ~~~~l~~~--~~~~ii~ls 89 (140)
T 3cg0_A 73 TAARLAAG--CNLPIIFIT 89 (140)
T ss_dssp HHHHHHHH--SCCCEEEEE
T ss_pred HHHHHHhC--CCCCEEEEe
Confidence 33344443 578988776
No 367
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=23.13 E-value=23 Score=24.46 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=28.4
Q ss_pred CCcCEEEEcCCCCCCCCCc-----hHHHHHHHHHHHHHhcCCcEEEEchHHHHHH
Q 033165 57 GSYDGYVITGSCNDAHGND-----VWICKLIALLKQLDSLRKKVLGICFGHQVRA 106 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~~~-----~~~~~~~~~i~~~~~~~~PvlGIC~G~Q~la 106 (126)
...|.+|+||-..+....- .|.++..+ .. ..+++|+|+-.|++.
T Consensus 110 ~~iDlvlvP~vafD~~G~RLG~GgGyYDR~L~---~~---~~~~igla~~~Q~v~ 158 (194)
T 1sou_A 110 EDVDFIAVPGVAFDLEGYRLGFGKGYYDRLLK---RV---KGLKVGVAYSFQVFE 158 (194)
T ss_dssp GGCSEEEECCSCBCSSSCBCCSCCSSHHHHHH---HC---CSEEEEECCGGGBCS
T ss_pred CCCCEEEECCeEECCCCceeccCCcHHHHHHH---hc---CCCEEEEEchHhccC
Confidence 4679999999865543221 35555432 22 247899999999863
No 368
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=23.05 E-value=67 Score=21.42 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=14.0
Q ss_pred HHHHHHHhcCCcEEEEchH
Q 033165 83 ALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 83 ~~i~~~~~~~~PvlGIC~G 101 (126)
+.++.+.+.++++..|.+|
T Consensus 130 ~~~~~~~~~~i~v~~igig 148 (218)
T 3ibs_A 130 EAAKAAAEKGIQVSVLGVG 148 (218)
T ss_dssp HHHHHHHTTTEEEEEEEES
T ss_pred HHHHHHHhcCCEEEEEEec
Confidence 4455555678999999888
No 369
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=22.78 E-value=1.5e+02 Score=21.62 Aligned_cols=41 Identities=17% Similarity=0.166 Sum_probs=22.8
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEE
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
...|||++.|+....+. +.+...++.+...+....++|++.
T Consensus 40 ~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 81 (297)
T 3flu_A 40 NGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIA 81 (297)
T ss_dssp TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred cCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 36899999998654321 112222333444444445688774
No 370
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=22.72 E-value=1.5e+02 Score=19.46 Aligned_cols=39 Identities=10% Similarity=0.065 Sum_probs=18.2
Q ss_pred CcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 58 SYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
++|.||++|=-.+.... .....++++.+.+.++|++.|.
T Consensus 32 ~~D~vi~~GDl~~~~~~---~~~~~~~~~~l~~~~~pv~~v~ 70 (228)
T 1uf3_A 32 GADAIALIGNLMPKAAK---SRDYAAFFRILSEAHLPTAYVP 70 (228)
T ss_dssp TCSEEEEESCSSCTTCC---HHHHHHHHHHHGGGCSCEEEEC
T ss_pred CCCEEEECCCCCCCCCC---HHHHHHHHHHHHhcCCcEEEEC
Confidence 45677777643221101 1223334444433467777664
No 371
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=22.69 E-value=65 Score=19.88 Aligned_cols=31 Identities=6% Similarity=0.001 Sum_probs=17.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhh-CCCeEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAE-EGETWD 41 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~ 41 (126)
|.++||+|++.+.. +...+.+.|+. .|.++.
T Consensus 3 ~~~~~ILivdd~~~----------~~~~l~~~L~~~~~~~v~ 34 (153)
T 3cz5_A 3 LSTARIMLVDDHPI----------VREGYRRLIERRPGYAVV 34 (153)
T ss_dssp -CCEEEEEECSCHH----------HHHHHHHHHTTSTTEEEE
T ss_pred CcccEEEEECCcHH----------HHHHHHHHHhhCCCcEEE
Confidence 34578888865432 22346777766 565543
No 372
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=22.57 E-value=77 Score=21.88 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=18.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV 42 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 42 (126)
|.++||+|++-+.. +...+...|+..+..+..
T Consensus 35 m~~~~ILivdd~~~----------~~~~l~~~L~~~g~~v~~ 66 (249)
T 3q9s_A 35 MNEQRILVIEDDHD----------IANVLRMDLTDAGYVVDH 66 (249)
T ss_dssp --CCEEEEECSCHH----------HHHHHHHHHHTTTCEEEE
T ss_pred CCCCEEEEEECCHH----------HHHHHHHHHHHCCCEEEE
Confidence 44578988855432 223466777777765443
No 373
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=22.48 E-value=1.5e+02 Score=21.66 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=22.7
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEE
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
...|||++.|+...... +.....++.+...+....++|++.
T Consensus 45 ~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVia 86 (301)
T 1xky_A 45 NGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIA 86 (301)
T ss_dssp TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred cCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEe
Confidence 36899999998654321 112222334444444445688763
No 374
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=22.06 E-value=1.4e+02 Score=21.79 Aligned_cols=41 Identities=15% Similarity=0.173 Sum_probs=22.7
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEE
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
...|||++.|+...... +.....++.+...+....++|++.
T Consensus 44 ~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpVia 85 (303)
T 2wkj_A 44 QGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIA 85 (303)
T ss_dssp TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred cCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 36899999998654321 112222333444444445688864
No 375
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=21.95 E-value=1.9e+02 Score=22.73 Aligned_cols=56 Identities=13% Similarity=0.018 Sum_probs=31.9
Q ss_pred CcCEEEEcCCCCCCCCC-------chHHHHHHHHHHHHHhcCCcEEE---EchHHHHH-HHHhCCcc
Q 033165 58 SYDGYVITGSCNDAHGN-------DVWICKLIALLKQLDSLRKKVLG---ICFGHQVR-AITVFSSH 113 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~~-------~~~~~~~~~~i~~~~~~~~PvlG---IC~G~Q~l-a~~~Gg~v 113 (126)
..|+|++.+|+.+.... .+-...+.+..+.+.+.++|+++ |..+-.+. +.++|+..
T Consensus 293 GaD~I~Vg~g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~ 359 (496)
T 4fxs_A 293 GVSAVKVGIGPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASC 359 (496)
T ss_dssp TCSEEEECSSCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSE
T ss_pred CCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCe
Confidence 68999998776543211 12222233333333344799987 76666665 66777753
No 376
>4eg0_A D-alanine--D-alanine ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.65A {Burkholderia ambifaria} PDB: 4egq_A 4egj_A
Probab=21.94 E-value=93 Score=22.39 Aligned_cols=60 Identities=17% Similarity=0.019 Sum_probs=33.7
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~ 65 (126)
++||+||..+...+.-.+-. =...+.+.|++.|.++..+.......... ...++|.++..
T Consensus 13 ~~~v~vl~gg~s~E~~vsl~--s~~~v~~al~~~g~~v~~i~~~~~~~~~l-~~~~~D~v~~~ 72 (317)
T 4eg0_A 13 FGKVAVLFGGESAEREVSLT--SGRLVLQGLRDAGIDAHPFDPAERPLSAL-KDEGFVRAFNA 72 (317)
T ss_dssp GCEEEEECCCSSTTHHHHHH--HHHHHHHHHHHTTCEEEEECTTTSCTTHH-HHTTCCEEEEC
T ss_pred cceEEEEECCCCCcceeeHH--HHHHHHHHHHHCCCEEEEEeCCCchHHHh-hhcCCCEEEEc
Confidence 46899998876654211100 12456688888999888776322111100 01467877763
No 377
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=21.88 E-value=77 Score=23.60 Aligned_cols=30 Identities=13% Similarity=0.175 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhcCCcEEEEchHHHHHHHH
Q 033165 79 CKLIALLKQLDSLRKKVLGICFGHQVRAIT 108 (126)
Q Consensus 79 ~~~~~~i~~~~~~~~PvlGIC~G~Q~la~~ 108 (126)
+++++-+++-++.++|++|.+.|--+-|+.
T Consensus 14 ~~il~~l~~~i~~~~~iig~gaGtGlsAk~ 43 (286)
T 2p10_A 14 SELVDRFQKKIRAGEPIIGGGAGTGLSAKS 43 (286)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEESSHHHHHH
T ss_pred HHHHHHHHHHHhcCCceEEEecccchhhHH
Confidence 445666777778899999999888877654
No 378
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=21.73 E-value=95 Score=22.17 Aligned_cols=40 Identities=20% Similarity=0.076 Sum_probs=23.2
Q ss_pred CCC--CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGG--KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~--~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|++ |||+++-.+.. ... .....+.+.|.+.|.++.++...
T Consensus 2 M~~m~mkIl~~~~~~g-G~~-----~~~~~la~~L~~~G~~V~v~~~~ 43 (364)
T 1f0k_A 2 MSGQGKRLMVMAGGTG-GHV-----FPGLAVAHHLMAQGWQVRWLGTA 43 (364)
T ss_dssp -----CEEEEECCSSH-HHH-----HHHHHHHHHHHTTTCEEEEEECT
T ss_pred CCCCCcEEEEEeCCCc-cch-----hHHHHHHHHHHHcCCEEEEEecC
Confidence 455 79999953321 111 01235667788889999988753
No 379
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=21.71 E-value=2.1e+02 Score=19.93 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=24.4
Q ss_pred CC-CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 1 MG-GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 1 M~-~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
|+ ++||+|--++..... |.-.+.+.|.+.|.+++++
T Consensus 1 m~~~k~IllgvTGaiaa~-------k~~~ll~~L~~~g~eV~vv 37 (209)
T 3zqu_A 1 MSGPERITLAMTGASGAQ-------YGLRLLDCLVQEEREVHFL 37 (209)
T ss_dssp CCSCSEEEEEECSSSCHH-------HHHHHHHHHHHTTCEEEEE
T ss_pred CCCCCEEEEEEECHHHHH-------HHHHHHHHHHHCCCEEEEE
Confidence 55 468988888886532 2334667777788888766
No 380
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=21.69 E-value=1.5e+02 Score=21.76 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=23.0
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEE
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
...|||++.|+...... +.+...++.+...+....++|++.
T Consensus 48 ~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpvia 89 (304)
T 3l21_A 48 QGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIA 89 (304)
T ss_dssp TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEE
T ss_pred cCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEE
Confidence 46899999998654321 112222334444444445688764
No 381
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=21.61 E-value=1.4e+02 Score=21.57 Aligned_cols=41 Identities=17% Similarity=0.151 Sum_probs=22.5
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEE
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
...|||++.|+...... +.+...++.+...+....++|++.
T Consensus 33 ~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpvia 74 (294)
T 2ehh_A 33 NGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIA 74 (294)
T ss_dssp TTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 36899999998654321 112222333444444445688763
No 382
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=21.44 E-value=1.7e+02 Score=25.90 Aligned_cols=55 Identities=20% Similarity=-0.036 Sum_probs=28.5
Q ss_pred CC-CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCC
Q 033165 1 MG-GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSC 68 (126)
Q Consensus 1 M~-~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~ 68 (126)
|. ++||+|+..+. ..-.+.+.+++.|+++..+....+. ... .....|-.+..|.+
T Consensus 1 M~~~kkVLIagrGe-----------ia~riiraa~elGi~vVav~s~~d~-~s~-~~~~ADe~~~ig~~ 56 (1150)
T 3hbl_A 1 MKQIKKLLVANRGE-----------IAIRIFRAAAELDISTVAIYSNEDK-SSL-HRYKADESYLVGSD 56 (1150)
T ss_dssp --CCCEEEECCCHH-----------HHHHHHHHHHHTTCEEEEEECGGGT-TCG-GGGTSSEEEECCTT
T ss_pred CCCCCEEEEECCCH-----------HHHHHHHHHHHCCCEEEEEEcCCcc-cch-hhhhcceeeecCCC
Confidence 55 46888864322 1224667888899987776543221 111 12345666655543
No 383
>2dzd_A Pyruvate carboxylase; biotin carboxylase, ligase; 2.40A {Geobacillus thermodenitrificans}
Probab=21.41 E-value=80 Score=24.11 Aligned_cols=35 Identities=17% Similarity=-0.110 Sum_probs=22.1
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
|.|+||+|+..+. ....+.+.+++.|.++..+...
T Consensus 4 ~~~k~ILI~g~g~-----------~~~~i~~a~~~~G~~vv~v~~~ 38 (461)
T 2dzd_A 4 RRIRKVLVANRGE-----------IAIRVFRACTELGIRTVAIYSK 38 (461)
T ss_dssp CCCSEEEECSCHH-----------HHHHHHHHHHHHTCEEEEEECG
T ss_pred CcCcEEEEECCcH-----------HHHHHHHHHHHcCCEEEEEECC
Confidence 3467899984321 1234667788889888776543
No 384
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=21.29 E-value=41 Score=24.34 Aligned_cols=57 Identities=12% Similarity=0.050 Sum_probs=33.7
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCC-----CC--CCCcCEEEEcCC
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDD-----DD--FGSYDGYVITGS 67 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~-----~~--~~~~d~iii~G~ 67 (126)
.+|+++..+..++... .+..-+.+.+++.|.++.++.... +.. +. -..+||||+.+.
T Consensus 65 ~~Igvi~~~~~~~~~~----~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~vdGiIi~~~ 128 (333)
T 3jvd_A 65 ALVGVIVPDLSNEYYS----ESLQTIQQDLKAAGYQMLVAEANS---VQAQDVVMESLISIQAAGIIHVPV 128 (333)
T ss_dssp CEEEEEESCSSSHHHH----HHHHHHHHHHHHHTCEEEEEECCS---HHHHHHHHHHHHHHTCSEEEECCC
T ss_pred CEEEEEeCCCcChHHH----HHHHHHHHHHHHCCCEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEcch
Confidence 5788888766554221 233345566677798888776432 110 00 146899999875
No 385
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=21.22 E-value=95 Score=19.21 Aligned_cols=81 Identities=11% Similarity=-0.027 Sum_probs=39.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEEcCCCCCCCCCchHHHHHH
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVITGSCNDAHGNDVWICKLI 82 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii~G~~~~~~~~~~~~~~~~ 82 (126)
++||+|++-+.. +...+.+.|+..|.++..+.-....+... .-..+|.||+-=. ....+. ..+.
T Consensus 7 ~~~ILivdd~~~----------~~~~l~~~L~~~g~~v~~~~~~~~al~~l-~~~~~dlii~D~~-l~~~~g----~~~~ 70 (154)
T 3gt7_A 7 AGEILIVEDSPT----------QAEHLKHILEETGYQTEHVRNGREAVRFL-SLTRPDLIISDVL-MPEMDG----YALC 70 (154)
T ss_dssp CCEEEEECSCHH----------HHHHHHHHHHTTTCEEEEESSHHHHHHHH-TTCCCSEEEEESC-CSSSCH----HHHH
T ss_pred CCcEEEEeCCHH----------HHHHHHHHHHHCCCEEEEeCCHHHHHHHH-HhCCCCEEEEeCC-CCCCCH----HHHH
Confidence 368888865443 22357788888887665443111000000 1145888777422 111111 1233
Q ss_pred HHHHHHHh-cCCcEEEEc
Q 033165 83 ALLKQLDS-LRKKVLGIC 99 (126)
Q Consensus 83 ~~i~~~~~-~~~PvlGIC 99 (126)
+.+++... ..+|++-+.
T Consensus 71 ~~lr~~~~~~~~pii~~s 88 (154)
T 3gt7_A 71 RWLKGQPDLRTIPVILLT 88 (154)
T ss_dssp HHHHHSTTTTTSCEEEEE
T ss_pred HHHHhCCCcCCCCEEEEE
Confidence 33443211 468888776
No 386
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=21.21 E-value=1.5e+02 Score=21.41 Aligned_cols=41 Identities=17% Similarity=0.188 Sum_probs=22.3
Q ss_pred CCcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEE
Q 033165 57 GSYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 57 ~~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
...|||++.|+...... +.+...++.+...+....++|++.
T Consensus 33 ~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 74 (289)
T 2yxg_A 33 NGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIA 74 (289)
T ss_dssp TTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEE
T ss_pred CCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 36899999998654321 112222333444444445688763
No 387
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=21.14 E-value=1.7e+02 Score=19.72 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFH 44 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 44 (126)
++||++.-++..... +.-.+.+.|.+.|.+++++-
T Consensus 5 ~k~IllgvTGs~aa~-------k~~~ll~~L~~~g~~V~vv~ 39 (175)
T 3qjg_A 5 GENVLICLCGSVNSI-------NISHYIIELKSKFDEVNVIA 39 (175)
T ss_dssp CCEEEEEECSSGGGG-------GHHHHHHHHTTTCSEEEEEE
T ss_pred CCEEEEEEeCHHHHH-------HHHHHHHHHHHCCCEEEEEE
Confidence 479999999886431 23345677777888887663
No 388
>3ca8_A Protein YDCF; two domains, alpha/beta fold, helix bundle, structural genom structure 2 function project, S2F, unknown function; 1.80A {Escherichia coli}
Probab=21.12 E-value=2e+02 Score=20.79 Aligned_cols=13 Identities=15% Similarity=0.204 Sum_probs=10.7
Q ss_pred CCcCEEEEcCCCC
Q 033165 57 GSYDGYVITGSCN 69 (126)
Q Consensus 57 ~~~d~iii~G~~~ 69 (126)
...|+||+.||..
T Consensus 35 ~~~D~IVVLG~~~ 47 (266)
T 3ca8_A 35 YQADCVILAGNAV 47 (266)
T ss_dssp CCCSEEEEESCCC
T ss_pred CCCCEEEECCCCc
Confidence 4799999999853
No 389
>2pn1_A Carbamoylphosphate synthase large subunit; ZP_00538348.1, ATP-grAsp domain, carbamoylphosphate synthase subunit (split gene in MJ); 2.00A {Exiguobacterium sibiricum}
Probab=21.03 E-value=2.3e+02 Score=20.12 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=10.7
Q ss_pred CCCCeEEEEEcCCC
Q 033165 1 MGGKKFAVLLCAED 14 (126)
Q Consensus 1 M~~~ki~Il~~~~~ 14 (126)
|.++||+|+-.+..
T Consensus 2 m~~~~Ili~g~g~~ 15 (331)
T 2pn1_A 2 MQKPHLLITSAGRR 15 (331)
T ss_dssp TTCCEEEEESCTTC
T ss_pred CccceEEEecCCch
Confidence 78899999965543
No 390
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=21.01 E-value=72 Score=22.55 Aligned_cols=34 Identities=6% Similarity=0.212 Sum_probs=23.8
Q ss_pred CCCCcCEEEEcCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEc
Q 033165 55 DFGSYDGYVITGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGIC 99 (126)
Q Consensus 55 ~~~~~d~iii~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC 99 (126)
....+|.+|+..- ..+ ...++++...++|+.|+|
T Consensus 112 ~f~~PdlliV~Dp----~~e-------~~ai~EA~~l~IPvIalv 145 (208)
T 1vi6_A 112 EYREPEVVFVNDP----AID-------KQAVSEATAVGIPVVALC 145 (208)
T ss_dssp TCCCCSEEEESCT----TTT-------HHHHHHHHHTTCCEEEEE
T ss_pred hhCCCCEEEEECC----Ccc-------hhHHHHHHHhCCCEEEEe
Confidence 3457899999843 121 234677777899999998
No 391
>2fb9_A D-alanine:D-alanine ligase; 1.90A {Thermus caldophilus} PDB: 2zdh_A* 2yzg_A 2yzn_A* 2yzm_A* 2zdg_A* 2zdq_A*
Probab=20.95 E-value=1.1e+02 Score=22.28 Aligned_cols=16 Identities=13% Similarity=0.065 Sum_probs=12.6
Q ss_pred CCCCeEEEEEcCCCch
Q 033165 1 MGGKKFAVLLCAEDSE 16 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~ 16 (126)
|+++||+||--+...+
T Consensus 1 m~~~~v~vl~gg~s~E 16 (322)
T 2fb9_A 1 MEFMRVLLIAGGVSPE 16 (322)
T ss_dssp CCCCCEEEEEECSSTT
T ss_pred CCCcEEEEEeCCCchh
Confidence 8889999998665544
No 392
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=20.74 E-value=1e+02 Score=17.72 Aligned_cols=30 Identities=13% Similarity=0.014 Sum_probs=18.0
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV 42 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 42 (126)
|+||+|++.+.. +...+...|+..|.++..
T Consensus 1 m~~ilivdd~~~----------~~~~l~~~l~~~~~~v~~ 30 (120)
T 2a9o_A 1 MKKILIVDDEKP----------ISDIIKFNMTKEGYEVVT 30 (120)
T ss_dssp -CEEEEECSCHH----------HHHHHHHHHHHTTCEEEE
T ss_pred CceEEEEcCCHH----------HHHHHHHHHHhcCcEEEE
Confidence 468888865432 223466777777776553
No 393
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=20.73 E-value=1.7e+02 Score=18.89 Aligned_cols=30 Identities=17% Similarity=0.016 Sum_probs=18.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV 42 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 42 (126)
.+||+|++-+... ...+...|+..|+++..
T Consensus 12 ~~~iLivdd~~~~----------~~~l~~~L~~~g~~v~~ 41 (196)
T 1qo0_D 12 ELQVLVLNPPGEV----------SDALVLQLIRIGCSVRQ 41 (196)
T ss_dssp GCEEEEESCTTHH----------HHHHHHHHHHHTCEEEE
T ss_pred CCeEEEEcCChhH----------HHHHHHHHHHcCCeEEE
Confidence 4688888655432 23466777777776553
No 394
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=20.71 E-value=67 Score=23.00 Aligned_cols=51 Identities=22% Similarity=0.196 Sum_probs=33.2
Q ss_pred eEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEccCCCCCCCCC---------CCCcCEEEEcCC
Q 033165 5 KFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVARGEFPDDDD---------FGSYDGYVITGS 67 (126)
Q Consensus 5 ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~p~~~~---------~~~~d~iii~G~ 67 (126)
||++...+...+ .+.+.|++.|.+++.+.+++.. |..+. -..+|.|+++-+
T Consensus 158 ~vLi~r~~~~~~-----------~L~~~L~~~G~~v~~~~~Y~~~-~~~~~~~~~~~~l~~~~~d~v~FtS~ 217 (286)
T 3d8t_A 158 VAALQLYGKPLP-----------LLENALAERGYRVLPLMPYRHL-PDPEGILRLEEAVLRGEVDALAFVAA 217 (286)
T ss_dssp EEEEECSSSCCH-----------HHHHHHHHTTCEEEEECSEEEE-ECHHHHHHHHHHHHTTCCSEEEESSH
T ss_pred eEEEEccCcccH-----------HHHHHHHHCCCEEEEEEEEEEe-cCcccHHHHHHHHHcCCCCEEEEECH
Confidence 788887766543 3667888999988877665322 21110 146899998744
No 395
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=20.64 E-value=32 Score=26.18 Aligned_cols=44 Identities=18% Similarity=0.059 Sum_probs=24.3
Q ss_pred CCCcCEEEEc-CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchHH
Q 033165 56 FGSYDGYVIT-GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFGH 102 (126)
Q Consensus 56 ~~~~d~iii~-G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 102 (126)
+.+.|.||++ ||+..+--..--++.+.+.|+ +...|+..||.-|
T Consensus 186 I~~AD~IvlgPGSlyTSI~P~Llv~gi~~Ai~---~s~A~kV~V~Nlm 230 (341)
T 2p0y_A 186 IMAADQIVLGPGSLFTSILPNLTIGNIGRAVC---ESDAEVVYICNIM 230 (341)
T ss_dssp HHHCSEEEECSSCCCCCCHHHHSSHHHHHHHH---HCSSEEEEECCSB
T ss_pred HHhCCEEEECCCCCHHHhcccccCccHHHHHH---hCCCCEEEEeCCC
Confidence 4678999995 454433111111233333333 3568999999754
No 396
>2him_A L-asparaginase 1; hydrolase; 1.82A {Escherichia coli} PDB: 2p2d_A 2p2n_A 3ntx_A* 2ocd_A
Probab=20.59 E-value=1.6e+02 Score=22.28 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=22.7
Q ss_pred CCcCEEEEcCC-CCCCCCCchHHHHHHHHHHHHHhcCCcEEE
Q 033165 57 GSYDGYVITGS-CNDAHGNDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 57 ~~~d~iii~G~-~~~~~~~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
..++|||+-|- ..+... . ..+.+.|+++.++++||.-
T Consensus 252 ~g~~GiVle~~G~Gn~p~-~---~~~~~~l~~a~~~Gi~VV~ 289 (358)
T 2him_A 252 QPVKALILRSYGVGNAPQ-N---KAFLQELQEASDRGIVVVN 289 (358)
T ss_dssp SSCSEEEEEEBTTTBCCC-C---HHHHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEecCCCCCCCC-c---HHHHHHHHHHHHCCCEEEE
Confidence 46999999642 223322 1 2345567777788999863
No 397
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=20.55 E-value=25 Score=21.64 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCC-CeEEEEEccCCCCCCCCCC-CCcCEEEEc
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEG-ETWDVFHVARGEFPDDDDF-GSYDGYVIT 65 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g-~~~~~~~~~~~~~p~~~~~-~~~d~iii~ 65 (126)
..||+|++.+.. +...+.++|+..| .++..+.-....+.....- ..+|.||+-
T Consensus 20 ~~~ilivdd~~~----------~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D 74 (146)
T 4dad_A 20 MINILVASEDAS----------RLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMID 74 (146)
T ss_dssp GCEEEEECSCHH----------HHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEE
T ss_pred CCeEEEEeCCHH----------HHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEe
Confidence 468888865443 2234677787777 6665543111011111011 468877773
No 398
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=20.52 E-value=83 Score=19.28 Aligned_cols=31 Identities=19% Similarity=0.096 Sum_probs=17.2
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVF 43 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 43 (126)
.+||+|++-+.. ....+.++|+..|.++..+
T Consensus 14 ~~~iLivdd~~~----------~~~~l~~~L~~~g~~v~~~ 44 (143)
T 3m6m_D 14 SMRMLVADDHEA----------NRMVLQRLLEKAGHKVLCV 44 (143)
T ss_dssp -CEEEEECSSHH----------HHHHHHHHHHC--CEEEEE
T ss_pred cceEEEEeCCHH----------HHHHHHHHHHHcCCeEEEe
Confidence 468888855432 1234677887777766543
No 399
>2r85_A PURP protein PF1517; ATP-grAsp superfamily, unknown function; HET: AMP; 1.70A {Pyrococcus furiosus} SCOP: c.30.1.8 d.142.1.9 PDB: 2r84_A* 2r86_A* 2r87_A*
Probab=20.44 E-value=1.1e+02 Score=21.77 Aligned_cols=33 Identities=12% Similarity=-0.018 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEEcc
Q 033165 2 GGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFHVA 46 (126)
Q Consensus 2 ~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~ 46 (126)
++|||+|+..+ . ...+.+.+++.|.++..+...
T Consensus 1 m~m~Ililg~g-~-----------~~~l~~a~~~~G~~v~~~~~~ 33 (334)
T 2r85_A 1 MKVRIATYASH-S-----------ALQILKGAKDEGFETIAFGSS 33 (334)
T ss_dssp CCSEEEEESST-T-----------HHHHHHHHHHTTCCEEEESCG
T ss_pred CceEEEEECCh-h-----------HHHHHHHHHhCCCEEEEEECC
Confidence 04699999776 1 234677888899988877654
No 400
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=20.43 E-value=86 Score=18.72 Aligned_cols=31 Identities=6% Similarity=-0.153 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEEEE
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDVFH 44 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 44 (126)
+||+|++.+.. +...+.+.|+..+..+..+.
T Consensus 8 ~~ilivdd~~~----------~~~~l~~~L~~~~~~v~~~~ 38 (137)
T 3hdg_A 8 LKILIVEDDTD----------AREWLSTIISNHFPEVWSAG 38 (137)
T ss_dssp CCEEEECSCHH----------HHHHHHHHHHTTCSCEEEES
T ss_pred cEEEEEeCCHH----------HHHHHHHHHHhcCcEEEEEC
Confidence 68999865443 22346777877776665543
No 401
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=20.37 E-value=1.8e+02 Score=18.71 Aligned_cols=59 Identities=14% Similarity=0.202 Sum_probs=32.4
Q ss_pred HHHHHhhCCCeEEEEEccCCCCCCCCCCCCcCEEEE-cCCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEch
Q 033165 29 FVRMLAEEGETWDVFHVARGEFPDDDDFGSYDGYVI-TGSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICF 100 (126)
Q Consensus 29 ~~~~l~~~g~~~~~~~~~~~~~p~~~~~~~~d~iii-~G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~ 100 (126)
+...|...|..+..+. +... ..+.+-|.+|+ +-+..+ .+..+.++.+.+++.|+++|+-
T Consensus 58 ~~~~l~~~g~~~~~~~--~~~~---~~~~~~d~vi~iS~sG~t--------~~~~~~~~~ak~~g~~vi~IT~ 117 (180)
T 1jeo_A 58 FAMRLMHLGFKSYFVG--ETTT---PSYEKDDLLILISGSGRT--------ESVLTVAKKAKNINNNIIAIVC 117 (180)
T ss_dssp HHHHHHHTTCCEEETT--STTC---CCCCTTCEEEEEESSSCC--------HHHHHHHHHHHTTCSCEEEEES
T ss_pred HHHHHHHcCCeEEEeC--CCcc---ccCCCCCEEEEEeCCCCc--------HHHHHHHHHHHHCCCcEEEEeC
Confidence 4445556676655432 1111 23445555444 433221 2355667777778999999985
No 402
>3rof_A Low molecular weight protein-tyrosine-phosphatase; phosphatase, hydrolase; 1.03A {Staphylococcus aureus}
Probab=20.36 E-value=1.9e+02 Score=19.01 Aligned_cols=39 Identities=10% Similarity=0.002 Sum_probs=22.6
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCe-EEEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGET-WDVFH 44 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~ 44 (126)
|+|+||+++-++..-..--. ..++.+++++.|.. +++..
T Consensus 4 ~~m~~vLFVC~gN~cRSpmA-----E~i~~~~~~~~gl~~~~v~S 43 (158)
T 3rof_A 4 QGMVDVAFVCLGNICRSPMA-----EAIMRQRLKDRNIHDIKVHS 43 (158)
T ss_dssp CSCEEEEEEESSSSSHHHHH-----HHHHHHHHHHTTCCSEEEEE
T ss_pred CCCCEEEEEeCCchhHHHHH-----HHHHHHHHHHcCCCCeEEEe
Confidence 77889999988776532111 12455555555532 55543
No 403
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=20.34 E-value=77 Score=19.75 Aligned_cols=29 Identities=7% Similarity=-0.080 Sum_probs=18.6
Q ss_pred CCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEE
Q 033165 3 GKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWD 41 (126)
Q Consensus 3 ~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 41 (126)
++||+|++.+.. +...+...|+..|.++.
T Consensus 36 ~~~Ilivdd~~~----------~~~~l~~~L~~~g~~v~ 64 (157)
T 3hzh_A 36 PFNVLIVDDSVF----------TVKQLTQIFTSEGFNII 64 (157)
T ss_dssp ECEEEEECSCHH----------HHHHHHHHHHHTTCEEE
T ss_pred ceEEEEEeCCHH----------HHHHHHHHHHhCCCeEE
Confidence 468888865442 22346778888787654
No 404
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=20.30 E-value=63 Score=19.50 Aligned_cols=30 Identities=10% Similarity=-0.012 Sum_probs=18.5
Q ss_pred CeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCC--eEEEE
Q 033165 4 KKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGE--TWDVF 43 (126)
Q Consensus 4 ~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~--~~~~~ 43 (126)
+||+|++.+.. +...+.+.|+..|. .+..+
T Consensus 8 ~~ILivdd~~~----------~~~~l~~~L~~~g~~~~v~~~ 39 (143)
T 2qvg_A 8 VDILYLEDDEV----------DIQSVERVFHKISSLIKIEIA 39 (143)
T ss_dssp CSEEEECCCHH----------HHHHHHHHHHHHCTTCCEEEE
T ss_pred CeEEEEeCCHH----------HHHHHHHHHHHhCCCceEEEE
Confidence 68888865443 22346677777776 55544
No 405
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=20.27 E-value=95 Score=20.65 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=17.2
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWD 41 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 41 (126)
|..+||+|++-+... ...+...|+..|.++.
T Consensus 5 ~~~~~ilivdd~~~~----------~~~l~~~L~~~g~~v~ 35 (233)
T 1ys7_A 5 VTSPRVLVVDDDSDV----------LASLERGLRLSGFEVA 35 (233)
T ss_dssp --CCEEEEECSCHHH----------HHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEEeCCHHH----------HHHHHHHHHhCCCEEE
Confidence 345789988654432 2245666666666544
No 406
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=20.23 E-value=36 Score=25.74 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=23.8
Q ss_pred CCCcCEEEEc-CCCCCCCCCchHHHHHHHHHHHHHhcCCcEEEEchH
Q 033165 56 FGSYDGYVIT-GSCNDAHGNDVWICKLIALLKQLDSLRKKVLGICFG 101 (126)
Q Consensus 56 ~~~~d~iii~-G~~~~~~~~~~~~~~~~~~i~~~~~~~~PvlGIC~G 101 (126)
+.+.|.||+. ||+..+--..--++.+.+.|+ +...|...||.-
T Consensus 182 I~~AD~IvlgPGSl~TSI~P~Llv~gi~~Ai~---~s~A~kV~v~Nl 225 (326)
T 2q7x_A 182 ILESDMIVLGPGSLFTSILPNIVIXEIGRALL---ETXAEIAYVCNI 225 (326)
T ss_dssp HHHCSEEEECSSCCCCCCHHHHTSHHHHHHHH---HCSSEEEEECCS
T ss_pred HHhCCEEEECCCCCHHHHhhhhhhccHHHHHH---hccCceEEeccC
Confidence 4678999995 554433111111233333333 356899999973
No 407
>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}
Probab=20.22 E-value=69 Score=21.90 Aligned_cols=31 Identities=3% Similarity=-0.038 Sum_probs=20.3
Q ss_pred CCCCeEEEEEcCCCchHHHHhhCCHHHHHHHHHhhCCCeEEE
Q 033165 1 MGGKKFAVLLCAEDSEYVKKKYGGYFGVFVRMLAEEGETWDV 42 (126)
Q Consensus 1 M~~~ki~Il~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 42 (126)
|.|+||+|+-++. ....+...|.+.|.++.+
T Consensus 21 m~mmkI~IIG~G~-----------mG~~la~~l~~~g~~V~~ 51 (220)
T 4huj_A 21 QSMTTYAIIGAGA-----------IGSALAERFTAAQIPAII 51 (220)
T ss_dssp GGSCCEEEEECHH-----------HHHHHHHHHHHTTCCEEE
T ss_pred hcCCEEEEECCCH-----------HHHHHHHHHHhCCCEEEE
Confidence 5678999996543 233455666667777766
No 408
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=20.02 E-value=1.7e+02 Score=21.14 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=22.1
Q ss_pred CcCEEEEcCCCCCCCC-CchHHHHHHHHHHHHHhcCCcEEE
Q 033165 58 SYDGYVITGSCNDAHG-NDVWICKLIALLKQLDSLRKKVLG 97 (126)
Q Consensus 58 ~~d~iii~G~~~~~~~-~~~~~~~~~~~i~~~~~~~~PvlG 97 (126)
..|||++.|+...... +.+...++.+...+....++|++.
T Consensus 35 Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvia 75 (292)
T 2ojp_A 35 GTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIA 75 (292)
T ss_dssp TCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEE
T ss_pred CCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEE
Confidence 5899999998654321 112222333444444445688863
Done!