Query 033167
Match_columns 125
No_of_seqs 132 out of 858
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:30:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033167.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033167hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v2d_U 50S ribosomal protein L 100.0 1.8E-55 6.3E-60 323.2 12.6 106 2-107 13-118 (118)
2 3r8s_Q 50S ribosomal protein L 100.0 1.8E-55 6.1E-60 322.9 11.3 106 2-107 12-117 (117)
3 2ghj_A 50S ribosomal protein L 100.0 2.1E-55 7E-60 323.0 10.7 105 2-106 11-115 (118)
4 2zjr_N 50S ribosomal protein L 100.0 9E-55 3.1E-59 319.6 10.8 104 2-105 13-116 (118)
5 2ftc_L MRPL20 protein; mitocho 100.0 2.1E-54 7E-59 317.7 12.4 103 2-104 13-115 (118)
6 3bbo_S Ribosomal protein L20; 100.0 1.5E-53 5.1E-58 313.5 8.8 104 2-105 13-118 (119)
7 4aik_A Transcriptional regulat 67.3 25 0.00087 24.2 7.1 58 47-104 13-72 (151)
8 4b8x_A SCO5413, possible MARR- 61.8 24 0.00083 24.0 6.1 57 48-104 18-77 (147)
9 2cob_A LCOR protein; MLR2, KIA 59.5 5.2 0.00018 26.4 2.1 28 54-81 33-60 (70)
10 3e7l_A Transcriptional regulat 54.2 9.2 0.00031 23.2 2.5 26 53-78 34-59 (63)
11 1g2h_A Transcriptional regulat 50.8 13 0.00043 22.6 2.8 26 53-78 35-60 (61)
12 1umq_A Photosynthetic apparatu 35.6 23 0.00078 23.2 2.3 25 53-77 56-80 (81)
13 1ntc_A Protein (nitrogen regul 33.5 17 0.00059 23.5 1.5 25 53-77 66-90 (91)
14 1eto_A FIS, factor for inversi 31.9 31 0.0011 23.2 2.5 25 53-77 73-97 (98)
15 1nd9_A Translation initiation 30.6 21 0.00072 20.0 1.3 25 53-77 4-28 (49)
16 3vmx_A Voltage-gated hydrogen 29.2 25 0.00086 21.7 1.5 13 51-63 34-46 (48)
17 3izc_H 60S ribosomal protein R 28.2 3.8 0.00013 33.0 -3.0 94 15-109 126-225 (256)
18 2ck3_I ATP synthase subunit ep 27.1 36 0.0012 20.9 2.0 14 59-72 5-18 (50)
19 3a2a_A Voltage-gated hydrogen 26.4 26 0.00089 22.3 1.3 14 50-63 40-53 (58)
20 3oee_I ATP synthase subunit ep 24.6 28 0.00096 22.2 1.2 13 59-71 4-16 (61)
21 3vlf_B 26S protease regulatory 24.4 1.1E+02 0.0039 19.3 4.3 54 4-83 26-79 (88)
22 4fx0_A Probable transcriptiona 22.8 1.8E+02 0.0062 19.6 6.9 53 52-104 20-78 (148)
23 2k9i_A Plasmid PRN1, complete 22.3 62 0.0021 18.3 2.4 23 51-73 21-43 (55)
24 4i1u_A Dephospho-COA kinase; s 21.6 52 0.0018 24.8 2.4 38 61-98 50-91 (210)
25 2cpg_A REPA protein, transcrip 21.5 69 0.0023 17.5 2.4 23 51-73 14-36 (45)
26 3iz5_H 60S ribosomal protein L 21.0 4.8 0.00016 32.6 -3.7 58 50-108 158-220 (258)
27 2ba3_A NIKA; dimer, bacterial 21.0 64 0.0022 18.5 2.3 21 52-72 28-48 (51)
28 1i1n_A Protein-L-isoaspartate 20.3 90 0.0031 21.9 3.4 37 59-95 3-39 (226)
No 1
>3v2d_U 50S ribosomal protein L20; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_O 2hgj_T 2hgq_T 2hgu_T 1vsa_O 2j03_U 2jl6_U 2jl8_U 2v47_U 2v49_U 2wdi_U 2wdj_U 2wdl_U 2wdn_U 2wh2_U 2wh4_U 2wrj_U 2wrl_U 2wro_U 2wrr_U ...
Probab=100.00 E-value=1.8e-55 Score=323.24 Aligned_cols=106 Identities=46% Similarity=0.782 Sum_probs=103.3
Q ss_pred cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167 2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR 81 (125)
Q Consensus 2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR 81 (125)
.|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||+||++|+++||+|||
T Consensus 13 Rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~gL~k~~i~LNR 92 (118)
T 3v2d_U 13 KHKKILKLAKGYWGLRSKSFRKARETLFAAGNYAYAHRKRRKRDFRRLWIVRINAACRQHGLNYSTFIHGLKKAGIEVDR 92 (118)
T ss_dssp HHHHHHHHTTTCSGGGGTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHcCCCCcH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhChHHHHHHHHHHHhhCC
Q 033167 82 KVLSELSMHEPYSFKALVDISRNAFP 107 (125)
Q Consensus 82 K~La~LAi~dp~sF~~Lv~~ak~~~~ 107 (125)
||||||||+||.+|++||+.++.+++
T Consensus 93 K~La~lAi~dp~~F~~lv~~ak~~~~ 118 (118)
T 3v2d_U 93 KNLADLAVREPQVFAELVERAKAAQG 118 (118)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998763
No 2
>3r8s_Q 50S ribosomal protein L20; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_O 1p86_O 2awb_Q 2aw4_Q 2i2v_Q 2j28_Q 2i2t_Q* 2qao_Q* 2qba_Q* 2qbc_Q* 2qbe_Q 2qbg_Q 2qbi_Q* 2qbk_Q* 2qov_Q 2qox_Q 2qoz_Q* 2qp1_Q* 2rdo_Q 2vhm_Q ...
Probab=100.00 E-value=1.8e-55 Score=322.91 Aligned_cols=106 Identities=42% Similarity=0.794 Sum_probs=103.5
Q ss_pred cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167 2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR 81 (125)
Q Consensus 2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR 81 (125)
.|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||+||++|+++||+|||
T Consensus 12 Rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~L~k~~i~LNR 91 (117)
T 3r8s_Q 12 RHKKILKQAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDR 91 (117)
T ss_dssp HHHHHHHHTTTCCTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHhccccCcccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCCCcH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhChHHHHHHHHHHHhhCC
Q 033167 82 KVLSELSMHEPYSFKALVDISRNAFP 107 (125)
Q Consensus 82 K~La~LAi~dp~sF~~Lv~~ak~~~~ 107 (125)
||||||||+||.+|++||+.++++++
T Consensus 92 K~La~lAi~dp~~F~~lv~~ak~~~~ 117 (117)
T 3r8s_Q 92 KILADIAVFDKVAFTALVEKAKAALA 117 (117)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHhcC
Confidence 99999999999999999999998753
No 3
>2ghj_A 50S ribosomal protein L20; folding intermediate, ribosomal protein extension, structural protein; 2.90A {Aquifex aeolicus} PDB: 1gyz_A
Probab=100.00 E-value=2.1e-55 Score=322.96 Aligned_cols=105 Identities=46% Similarity=0.857 Sum_probs=97.2
Q ss_pred cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167 2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR 81 (125)
Q Consensus 2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR 81 (125)
.|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||.||++|+++||+|||
T Consensus 11 rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~glsYS~fi~gL~k~~I~LNR 90 (118)
T 2ghj_A 11 KKKKILKLAKGYRGQRSRSYRRAKEAVMRALYYQYRDRKLRKREFRRLWIARINAAVRAYGLNYSTFINGLKKAGIELDR 90 (118)
T ss_dssp -------CCSSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHTTTTCCCCH
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhChHHHHHHHHHHHhhC
Q 033167 82 KVLSELSMHEPYSFKALVDISRNAF 106 (125)
Q Consensus 82 K~La~LAi~dp~sF~~Lv~~ak~~~ 106 (125)
||||||||+||.+|.+||+.++.++
T Consensus 91 KvLA~lAi~dp~~F~~lv~~ak~~l 115 (118)
T 2ghj_A 91 KILADMAVRDPQAFEQVVNKVKEAL 115 (118)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876
No 4
>2zjr_N 50S ribosomal protein L20; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.144.2.1 PDB: 1nwx_O* 1nwy_O* 1sm1_O* 1xbp_O* 1yl3_1 2b66_U 2b9n_U 2b9p_U 2zjp_N* 2zjq_N 1nkw_O 3cf5_N* 3dll_N* 3pio_N* 3pip_N* 1pnu_O 1pny_O 1vor_R 1vou_R 1vow_R ...
Probab=100.00 E-value=9e-55 Score=319.56 Aligned_cols=104 Identities=57% Similarity=0.903 Sum_probs=102.0
Q ss_pred cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167 2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR 81 (125)
Q Consensus 2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR 81 (125)
.|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||.||++|+++||+|||
T Consensus 13 rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYS~fi~gL~k~~I~LNR 92 (118)
T 2zjr_N 13 RHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNR 92 (118)
T ss_dssp HHHHHHTTCSSCCGGGGTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHCTTCCCC
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhChHHHHHHHHHHHhh
Q 033167 82 KVLSELSMHEPYSFKALVDISRNA 105 (125)
Q Consensus 82 K~La~LAi~dp~sF~~Lv~~ak~~ 105 (125)
||||||||+||.+|.+||+.++.+
T Consensus 93 KvLA~lAi~dp~~F~~lv~~ak~~ 116 (118)
T 2zjr_N 93 KVLADIAAREPEAFKALVDASRNA 116 (118)
T ss_dssp SSHHHHHHHCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCHHHHHHHHHHHHHh
Confidence 999999999999999999999864
No 5
>2ftc_L MRPL20 protein; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=100.00 E-value=2.1e-54 Score=317.68 Aligned_cols=103 Identities=39% Similarity=0.712 Sum_probs=101.4
Q ss_pred cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167 2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNR 81 (125)
Q Consensus 2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNR 81 (125)
.|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+|||.||++|+++||+|||
T Consensus 13 rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~g~sYs~fi~~L~k~~I~LNR 92 (118)
T 2ftc_L 13 RIQEVLKHARHFRGRKNRCYRLAVRTVIRAFVKCTKARYLKKKNMRTLWINRITAASQEHGLKYPALIGNLVKCQVELNR 92 (118)
T ss_pred HHHHHHHHhccccccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhCCCccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhhChHHHHHHHHHHHh
Q 033167 82 KVLSELSMHEPYSFKALVDISRN 104 (125)
Q Consensus 82 K~La~LAi~dp~sF~~Lv~~ak~ 104 (125)
||||||||+||.+|++||+.++.
T Consensus 93 KvLa~lAi~dp~~F~~lv~~ak~ 115 (118)
T 2ftc_L 93 KVLADLAIYEPKTFKSLAALASR 115 (118)
T ss_pred HHHHHHHHcCHHHHHHHHHHHHh
Confidence 99999999999999999999875
No 6
>3bbo_S Ribosomal protein L20; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=1.5e-53 Score=313.48 Aligned_cols=104 Identities=37% Similarity=0.609 Sum_probs=101.9
Q ss_pred cHHHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCC--ChHHHHHHHHHcCcch
Q 033167 2 NKKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGV--NYGNFMHGLMKENIQL 79 (125)
Q Consensus 2 ~Rkkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~Gl--sYs~fi~~Lkk~~i~L 79 (125)
.|++||++|+||+|++|+|||+|+|+|+|||+|||+||++||||||+|||+|||||+|++|+ |||.||++|+++||+|
T Consensus 13 rrkkilk~AkGfrG~~s~~~r~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~gl~~sYs~fi~~L~k~~I~L 92 (119)
T 3bbo_S 13 RRKKIRFFASSFRGAHSRLTRTIAQQKIRALVSAHRDRDRQKRDFRRLWITRINAAIRERGVYYNYSKFIHDLYKRQLLL 92 (119)
T ss_dssp HHHHHHHHCSSCSSSTTSSHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhccccccccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhHHHHHhhhChHHHHHHHHHHHhh
Q 033167 80 NRKVLSELSMHEPYSFKALVDISRNA 105 (125)
Q Consensus 80 NRK~La~LAi~dp~sF~~Lv~~ak~~ 105 (125)
||||||||||+||.+|.+|++.+++.
T Consensus 93 NRKvLa~lAi~dp~~F~~l~~~~k~~ 118 (119)
T 3bbo_S 93 NRKILAQIAILNPNCIYMIYNEIIKK 118 (119)
T ss_dssp SCSSGGGGTTSCTTTTTHHHHHHHHH
T ss_pred cHHHHHHHHHhCHHHHHHHHHHHhhc
Confidence 99999999999999999999999863
No 7
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=67.31 E-value=25 Score=24.18 Aligned_cols=58 Identities=10% Similarity=0.084 Sum_probs=44.4
Q ss_pred HHhHHHHHHHHhhcCCCChHHHH--HHHHHcCcchhhhHHHHHhhhChHHHHHHHHHHHh
Q 033167 47 RSLWIQRINAGTRQHGVNYGNFM--HGLMKENIQLNRKVLSELSMHEPYSFKALVDISRN 104 (125)
Q Consensus 47 R~LWI~RINAa~R~~GlsYs~fi--~~Lkk~~i~LNRK~La~LAi~dp~sF~~Lv~~ak~ 104 (125)
-++|-..++...+.+|+|++.|. ..|...+=.+.-+-||+..-.++.+-..+|+.-..
T Consensus 13 ~r~~~~~~~~~l~~~gLt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~ 72 (151)
T 4aik_A 13 VRVWRALIDHRLKPLELTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEE 72 (151)
T ss_dssp HHHHHHHHHHHTGGGCCCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 35677788889999999998764 45655555555577899889999999999885543
No 8
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=61.76 E-value=24 Score=24.05 Aligned_cols=57 Identities=18% Similarity=0.192 Sum_probs=42.7
Q ss_pred HhHHHHHHHHhhcCCCChHHHH--HHHHHc-CcchhhhHHHHHhhhChHHHHHHHHHHHh
Q 033167 48 SLWIQRINAGTRQHGVNYGNFM--HGLMKE-NIQLNRKVLSELSMHEPYSFKALVDISRN 104 (125)
Q Consensus 48 ~LWI~RINAa~R~~GlsYs~fi--~~Lkk~-~i~LNRK~La~LAi~dp~sF~~Lv~~ak~ 104 (125)
+++..+++...+.+|+|++.|. ..|... +=.+.=+-|++..-.++.+-..+++.-..
T Consensus 18 ~~l~~~~~~~l~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~ 77 (147)
T 4b8x_A 18 QILLGEVDAVVKPYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVR 77 (147)
T ss_dssp HHHHHHHHHHHGGGTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5677889999999999999874 344332 22456677888889999999998885443
No 9
>2cob_A LCOR protein; MLR2, KIAA1795, helix-turn-helix, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.15
Probab=59.48 E-value=5.2 Score=26.45 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=24.3
Q ss_pred HHHHhhcCCCChHHHHHHHHHcCcchhh
Q 033167 54 INAGTRQHGVNYGNFMHGLMKENIQLNR 81 (125)
Q Consensus 54 INAa~R~~GlsYs~fi~~Lkk~~i~LNR 81 (125)
|..|++++|+++|.+..-++.....+++
T Consensus 33 ~~~Aak~yGVP~sTL~~RVk~~~~~~~~ 60 (70)
T 2cob_A 33 VSKAQSIYGIPHSTLEYKVKERLGTLKN 60 (70)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHTTTTSS
T ss_pred HHHHHHHhCCChHHHHHHHHhhcccccC
Confidence 5679999999999999999888877765
No 10
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=54.15 E-value=9.2 Score=23.23 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=23.2
Q ss_pred HHHHHhhcCCCChHHHHHHHHHcCcc
Q 033167 53 RINAGTRQHGVNYGNFMHGLMKENIQ 78 (125)
Q Consensus 53 RINAa~R~~GlsYs~fi~~Lkk~~i~ 78 (125)
.+..+++..|++.+.|...|++.||.
T Consensus 34 n~~~aA~~LGisr~tL~rklkk~gi~ 59 (63)
T 3e7l_A 34 DLKRTAEEIGIDLSNLYRKIKSLNIR 59 (63)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHTTCC
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhCCC
Confidence 36679999999999999999999885
No 11
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=50.81 E-value=13 Score=22.62 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=22.3
Q ss_pred HHHHHhhcCCCChHHHHHHHHHcCcc
Q 033167 53 RINAGTRQHGVNYGNFMHGLMKENIQ 78 (125)
Q Consensus 53 RINAa~R~~GlsYs~fi~~Lkk~~i~ 78 (125)
.+..+++..||+.+.|...|++.||.
T Consensus 35 n~~~aA~~LGIsr~tL~rklkk~gi~ 60 (61)
T 1g2h_A 35 STRKLAQRLGVSHTAIANKLKQYGIG 60 (61)
T ss_dssp SHHHHHHHTTSCTHHHHHHHHTTTCC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhCCC
Confidence 45579999999999999999998863
No 12
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=35.60 E-value=23 Score=23.25 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=21.9
Q ss_pred HHHHHhhcCCCChHHHHHHHHHcCc
Q 033167 53 RINAGTRQHGVNYGNFMHGLMKENI 77 (125)
Q Consensus 53 RINAa~R~~GlsYs~fi~~Lkk~~i 77 (125)
.+..+++..||+.+.|...|++.+|
T Consensus 56 N~s~AA~~LGISR~TLyrKLkk~gi 80 (81)
T 1umq_A 56 NVSETARRLNMHRRTLQRILAKRSP 80 (81)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHTSSC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 3567999999999999999998876
No 13
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=33.47 E-value=17 Score=23.55 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=21.5
Q ss_pred HHHHHhhcCCCChHHHHHHHHHcCc
Q 033167 53 RINAGTRQHGVNYGNFMHGLMKENI 77 (125)
Q Consensus 53 RINAa~R~~GlsYs~fi~~Lkk~~i 77 (125)
.+..+++..||+.+.|...|++.||
T Consensus 66 n~~~aA~~LGIsr~tL~rklkk~~i 90 (91)
T 1ntc_A 66 HKQEAARLLGWGAATLTAKLKELGM 90 (91)
T ss_dssp CTTHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHhCc
Confidence 4567999999999999999998765
No 14
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=31.85 E-value=31 Score=23.18 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHhhcCCCChHHHHHHHHHcCc
Q 033167 53 RINAGTRQHGVNYGNFMHGLMKENI 77 (125)
Q Consensus 53 RINAa~R~~GlsYs~fi~~Lkk~~i 77 (125)
.+..|++..||+.+.|...|++.||
T Consensus 73 n~~~AA~~LGIsR~TL~rkLkk~gi 97 (98)
T 1eto_A 73 NQTRAALMMGINRGTLRKKLKKYGM 97 (98)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHTTC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHhCC
Confidence 4567999999999999999999886
No 15
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=30.61 E-value=21 Score=20.00 Aligned_cols=25 Identities=8% Similarity=0.154 Sum_probs=22.8
Q ss_pred HHHHHhhcCCCChHHHHHHHHHcCc
Q 033167 53 RINAGTRQHGVNYGNFMHGLMKENI 77 (125)
Q Consensus 53 RINAa~R~~GlsYs~fi~~Lkk~~i 77 (125)
||+-.+++.|++=..++..|+..|+
T Consensus 4 rv~~lAkel~~~~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 4 TIKTLAAERQTSVERLVQQFADAGI 28 (49)
T ss_dssp CTTHHHHHHSSSHHHHHHHHHHHTS
T ss_pred cHHHHHHHHCcCHHHHHHHHHHcCC
Confidence 6788899999999999999999998
No 16
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=29.15 E-value=25 Score=21.67 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=12.0
Q ss_pred HHHHHHHhhcCCC
Q 033167 51 IQRINAGTRQHGV 63 (125)
Q Consensus 51 I~RINAa~R~~Gl 63 (125)
|.|+|+..++||+
T Consensus 34 ieRL~~LLkqHgl 46 (48)
T 3vmx_A 34 IERLNKLLKQNGL 46 (48)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCC
Confidence 8899999999996
No 17
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=28.24 E-value=3.8 Score=33.03 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=59.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHh-HHHHHHHHhhcCCCChHHHHHHHHHcCcchhhhHHHHHhhhCh-
Q 033167 15 GRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSL-WIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEP- 92 (125)
Q Consensus 15 G~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~L-WI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNRK~La~LAi~dp- 92 (125)
+.+..+.+....+|.+++...--.-=.==.|.-.. .+.-|-+.|+++|++|- ++.+-...|-.+.++.-+-+||.|+
T Consensus 126 ~k~p~~lk~G~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~-~V~sK~eLG~A~Gkk~~s~VAItD~g 204 (256)
T 3izc_H 126 SPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYA-IVKGKARLGTLVNQKTSAVAALTEVR 204 (256)
T ss_dssp CCCSCCEEESHHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEE-EESCHHHHHHHTTCSSCCSEEEESSC
T ss_pred CCCChhhhccHHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEE-EECCHHHHHHHhCCCCcEEEEeecCC
Confidence 44566666677777777753200000000000011 23335789999999986 5566677777777888888888875
Q ss_pred ----HHHHHHHHHHHhhCCCC
Q 033167 93 ----YSFKALVDISRNAFPGN 109 (125)
Q Consensus 93 ----~sF~~Lv~~ak~~~~~~ 109 (125)
.+|..|++..+..++..
T Consensus 205 ~eDk~al~kLve~iktnynd~ 225 (256)
T 3izc_H 205 AEDEAALAKLVSTIDANFADK 225 (256)
T ss_dssp CSCCHHHHHHHHHHHHHCCCC
T ss_pred hhhHHHHHHHHHHHHhhhhhh
Confidence 57999999999876543
No 18
>2ck3_I ATP synthase subunit epsilon\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} PDB: 1e79_I* 1h8e_I* 2jdi_I* 2v7q_I* 2wss_I* 2w6j_I 2w6h_I 2w6i_I 2xnd_I*
Probab=27.14 E-value=36 Score=20.87 Aligned_cols=14 Identities=29% Similarity=0.439 Sum_probs=11.0
Q ss_pred hcCCCChHHHHHHH
Q 033167 59 RQHGVNYGNFMHGL 72 (125)
Q Consensus 59 R~~GlsYs~fi~~L 72 (125)
|..|+||.+|.+-.
T Consensus 5 R~aG~sY~~Ys~i~ 18 (50)
T 2ck3_I 5 RQAGLSYIRYSQIC 18 (50)
T ss_dssp SSSSCCHHHHHHHH
T ss_pred HHhCccHHHHHHHH
Confidence 67899999986544
No 19
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=26.38 E-value=26 Score=22.34 Aligned_cols=14 Identities=50% Similarity=0.677 Sum_probs=11.0
Q ss_pred HHHHHHHHhhcCCC
Q 033167 50 WIQRINAGTRQHGV 63 (125)
Q Consensus 50 WI~RINAa~R~~Gl 63 (125)
=|.|+|+..++||+
T Consensus 40 EieRL~~LLkqHgl 53 (58)
T 3a2a_A 40 EIERLNKLLRQHGL 53 (58)
T ss_dssp HHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHcCC
Confidence 38999999999997
No 20
>3oee_I ATP synthase subunit epsilon; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_I* 3fks_I 3oe7_I* 2hld_I* 3oeh_I* 3ofn_I* 4b2q_I* 2xok_I* 3zry_I*
Probab=24.58 E-value=28 Score=22.19 Aligned_cols=13 Identities=23% Similarity=0.764 Sum_probs=7.3
Q ss_pred hcCCCChHHHHHH
Q 033167 59 RQHGVNYGNFMHG 71 (125)
Q Consensus 59 R~~GlsYs~fi~~ 71 (125)
|..||||.+|.+-
T Consensus 4 R~AGltY~~Ys~i 16 (61)
T 3oee_I 4 RKAGISYAAYLNV 16 (61)
T ss_dssp ----CCHHHHHHH
T ss_pred HHhcccHHHHHHH
Confidence 6789999998654
No 21
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=24.43 E-value=1.1e+02 Score=19.33 Aligned_cols=54 Identities=13% Similarity=0.070 Sum_probs=33.3
Q ss_pred HHHHHHhhccccCCcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHhhcCCCChHHHHHHHHHcCcchhhhH
Q 033167 4 KEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKV 83 (125)
Q Consensus 4 kkilk~AkGfrG~~s~~~R~A~q~v~kAl~yayrdRk~kKR~fR~LWI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNRK~ 83 (125)
..|-+.+.||-|+ -+--+.+++.+.|+.-. ..-++...|...|++-.....+|.
T Consensus 26 ~~lA~~t~G~SGA--Dl~~l~~eAa~~a~r~~------------------------~~~i~~~df~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 26 ELISRLCPNSTGA--ELRSVCTEAGMFAIRAR------------------------RKVATEKDFLKAVDKVISGYKKFS 79 (88)
T ss_dssp HHHHHTCSSCCHH--HHHHHHHHHHHHHHHHS------------------------CSSBCHHHHHHHHHHHTC------
T ss_pred HHHHHHcCCCcHH--HHHHHHHHHHHHHHHhc------------------------cccCCHHHHHHHHHHHhcCccccc
Confidence 3566778899887 55666667777766431 123788899988887766666553
No 22
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=22.76 E-value=1.8e+02 Score=19.59 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=36.6
Q ss_pred HHHHHHhhcCCCChHHHHH--HHHHcC----cchhhhHHHHHhhhChHHHHHHHHHHHh
Q 033167 52 QRINAGTRQHGVNYGNFMH--GLMKEN----IQLNRKVLSELSMHEPYSFKALVDISRN 104 (125)
Q Consensus 52 ~RINAa~R~~GlsYs~fi~--~Lkk~~----i~LNRK~La~LAi~dp~sF~~Lv~~ak~ 104 (125)
...+...+.+|++.+.|.- .|.... -.+.=.-||+..-.|+.+-..+|+.-..
T Consensus 20 ~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~ 78 (148)
T 4fx0_A 20 QAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRR 78 (148)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHH
Confidence 4456778899999988743 333222 2366778888889999999999986554
No 23
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=22.34 E-value=62 Score=18.31 Aligned_cols=23 Identities=4% Similarity=0.105 Sum_probs=18.6
Q ss_pred HHHHHHHhhcCCCChHHHHHHHH
Q 033167 51 IQRINAGTRQHGVNYGNFMHGLM 73 (125)
Q Consensus 51 I~RINAa~R~~GlsYs~fi~~Lk 73 (125)
..+|...|...|+|-|.||...-
T Consensus 21 ~~~l~~~a~~~g~s~s~~ir~ai 43 (55)
T 2k9i_A 21 HDRLMEIAKEKNLTLSDVCRLAI 43 (55)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHH
Confidence 46788899999999999987643
No 24
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=21.59 E-value=52 Score=24.83 Aligned_cols=38 Identities=13% Similarity=0.162 Sum_probs=27.9
Q ss_pred CCCChHHHHHHHHHc----CcchhhhHHHHHhhhChHHHHHH
Q 033167 61 HGVNYGNFMHGLMKE----NIQLNRKVLSELSMHEPYSFKAL 98 (125)
Q Consensus 61 ~GlsYs~fi~~Lkk~----~i~LNRK~La~LAi~dp~sF~~L 98 (125)
.+..|.......-.. +=.|||+.|+++...||..-+.|
T Consensus 50 ~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~~~~~L 91 (210)
T 4i1u_A 50 AGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDEDARRRL 91 (210)
T ss_dssp TCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHHHHHHH
T ss_pred CcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHHHHHHH
Confidence 356777766655433 22699999999999999877665
No 25
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=21.48 E-value=69 Score=17.49 Aligned_cols=23 Identities=9% Similarity=0.289 Sum_probs=18.9
Q ss_pred HHHHHHHhhcCCCChHHHHHHHH
Q 033167 51 IQRINAGTRQHGVNYGNFMHGLM 73 (125)
Q Consensus 51 I~RINAa~R~~GlsYs~fi~~Lk 73 (125)
..+|...+...|+|-|.||...-
T Consensus 14 ~~~Ld~~a~~~g~srS~~ir~ai 36 (45)
T 2cpg_A 14 LENLEKMAREMGLSKSAMISVAL 36 (45)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHH
Confidence 46788899999999999987543
No 26
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=21.04 E-value=4.8 Score=32.58 Aligned_cols=58 Identities=17% Similarity=0.275 Sum_probs=45.8
Q ss_pred HHHHHHHHhhcCCCChHHHHHHHHHcCcchhhhHHHHHhhh-----ChHHHHHHHHHHHhhCCC
Q 033167 50 WIQRINAGTRQHGVNYGNFMHGLMKENIQLNRKVLSELSMH-----EPYSFKALVDISRNAFPG 108 (125)
Q Consensus 50 WI~RINAa~R~~GlsYs~fi~~Lkk~~i~LNRK~La~LAi~-----dp~sF~~Lv~~ak~~~~~ 108 (125)
++.-|=+.|++.|++|-. +.+-.+.|-.+.||+-+-+|+. |-.+|..||+.++..++.
T Consensus 158 lV~fLPaLC~k~gVPY~i-Vk~KarLG~~vgrKtct~Va~t~v~~eDk~aLakLveairtnynd 220 (258)
T 3iz5_H 158 LVVWLPALCRKMEVPYCI-VKGKARLGSIVHKKTASVLCLTTVKNEDKLEFSKILEAIKANFND 220 (258)
T ss_dssp HHHHHHHHHTTTTCCEEE-ESCHHHHHHHTTCSSCCSEEEEESCCSCCHHHHHHHHHHTTTSCC
T ss_pred HHhHHHHHHHhcCCCeEE-ECCHHHHHHHhCCccceEEEEEecCHHHHHHHHHHHHHHHhHhhh
Confidence 567788999999999963 5566777888889987777765 457799999998876544
No 27
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=21.02 E-value=64 Score=18.52 Aligned_cols=21 Identities=10% Similarity=0.340 Sum_probs=17.5
Q ss_pred HHHHHHhhcCCCChHHHHHHH
Q 033167 52 QRINAGTRQHGVNYGNFMHGL 72 (125)
Q Consensus 52 ~RINAa~R~~GlsYs~fi~~L 72 (125)
..|...+...|++-|.|+-.+
T Consensus 28 ~~l~~~A~~~g~s~SeyiR~~ 48 (51)
T 2ba3_A 28 ETIRKKAEDSGLTVSAYIRNA 48 (51)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHH
Confidence 468889999999999998654
No 28
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Probab=20.31 E-value=90 Score=21.90 Aligned_cols=37 Identities=19% Similarity=0.339 Sum_probs=28.8
Q ss_pred hcCCCChHHHHHHHHHcCcchhhhHHHHHhhhChHHH
Q 033167 59 RQHGVNYGNFMHGLMKENIQLNRKVLSELSMHEPYSF 95 (125)
Q Consensus 59 R~~GlsYs~fi~~Lkk~~i~LNRK~La~LAi~dp~sF 95 (125)
|..|.+...++..|...|+..|..++..+...+...|
T Consensus 3 ~~~~~~~~~l~~~l~~~g~~~~~~~~~a~~~~~r~~f 39 (226)
T 1i1n_A 3 KSGGASHSELIHNLRKNGIIKTDKVFEVMLATDRSHY 39 (226)
T ss_dssp CCCCSSHHHHHHHHHHTTSCCSHHHHHHHHTSCGGGT
T ss_pred CcCCchHHHHHHHHHHcCCcCCHHHHHHHHhCCHHHc
Confidence 5678889999999999999888888876655544433
Done!