Query 033169
Match_columns 125
No_of_seqs 105 out of 217
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 17:33:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033169.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033169hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_W 60S ribosomal protein L 100.0 6.5E-70 2.2E-74 406.8 6.6 125 1-125 1-130 (130)
2 3izc_W 60S ribosomal protein R 100.0 1.9E-69 6.7E-74 400.3 6.9 119 5-125 1-119 (121)
3 4a18_M RPL22, ribosomal protei 100.0 1.1E-66 3.7E-71 384.3 9.1 110 11-122 9-118 (118)
4 3me0_B PAPG protein; immunoglo 41.9 2.2 7.6E-05 31.5 -2.1 57 14-72 32-104 (128)
5 2kl8_A OR15; structural genomi 29.8 48 0.0017 22.3 3.2 39 33-74 11-50 (85)
6 2l9b_B MRNA 3'-END-processing 29.2 25 0.00086 22.3 1.6 20 28-47 25-44 (53)
7 3sgr_A Tandem repeat of amyloi 27.3 6.7 0.00023 21.3 -1.2 19 41-59 6-24 (25)
8 2b3g_B Cellular tumor antigen 23.9 33 0.0011 19.0 1.2 20 24-43 5-24 (28)
9 4a1y_A Myelin P2 protein; tran 23.7 27 0.00091 24.8 1.1 42 33-75 14-59 (133)
10 2lpe_A Kinase suppressor of RA 23.1 6.6 0.00022 29.6 -2.3 13 92-104 85-97 (149)
11 1ggl_A Protein (cellular retin 22.4 54 0.0018 23.1 2.5 42 33-75 12-57 (134)
12 3v46_A Cell division control p 21.8 1.1E+02 0.0038 22.9 4.2 39 27-65 22-62 (170)
13 2l7q_A Conserved protein found 20.8 38 0.0013 24.7 1.4 13 107-119 44-56 (124)
14 3koj_A Uncharacterized protein 20.6 38 0.0013 23.4 1.4 44 51-104 17-62 (108)
No 1
>3iz5_W 60S ribosomal protein L22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_W
Probab=100.00 E-value=6.5e-70 Score=406.83 Aligned_cols=125 Identities=83% Similarity=1.218 Sum_probs=104.0
Q ss_pred CCccccc----ccccCccceeEEEEeecCccCCCccchhhHHHhhhcceee-ccccCCCCCceEEEEeCCEEEEEecccc
Q 033169 1 MSRGAAA----AGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKV-GGKAGALGDSVTVTREKTKITVTSDSNF 75 (125)
Q Consensus 1 m~r~~~~----~~~~~kk~~~kF~iDCt~PveD~I~d~a~fekfL~erIKV-~gk~gnLg~~V~i~r~~~ki~V~s~~~f 75 (125)
||||.+. ..++++|+.++|+||||+||||||||+++||+|||||||| ||++||||+.|+|++++++|+|+|++||
T Consensus 1 ~~~~~~~~~~~~~~~kkk~~~kF~IDct~PveD~I~d~a~fekfL~erIKV~nGk~gnLg~~V~i~~~k~ki~V~s~~~f 80 (130)
T 3iz5_W 1 MARGVAVAAKGGAGGKKKGSVSFVIDCSKPVEDKIMEIASLEKFLQERIKVAGGKAGNLGDSVTVTRDKTKVTVTSDGAF 80 (130)
T ss_dssp -------------CCCCEEEEEECCCCCCSSSCSCCCSHHHHHHHHHHHHHHSSCCSSSCCCEEEEECSSCEEEEESSSC
T ss_pred CCcccccccccccCCccccceEEEEEecCcccCCeecHHHHHHHHHhheeecCCcccccCCceEEEEeCCEEEEEeccee
Confidence 8999873 3346678888999999999999999999999999999999 9999999999999999999999999999
Q ss_pred cchhhhhHHHhhhhccCCCceEEEEeccCCCCeEEEEeeeecCCCCCCCC
Q 033169 76 SKRYLKYLTKKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125 (125)
Q Consensus 76 sKRYLKYLtKKyLKk~~LRdwlrVvA~~K~~~~YeLrYfni~~d~~e~ee 125 (125)
||||||||||||||||+|||||||||++||+++||||||||++|||||||
T Consensus 81 SKRYLKYLTKKyLKKn~LRDwLRVVA~~Kd~~~YeLrYfnI~~de~ee~~ 130 (130)
T 3iz5_W 81 SKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNVYELRYFNIAENEGEEED 130 (130)
T ss_dssp SSTTHHHHHHHHHTTSSSCSSCCCCCSSSTTTTEEEECCCC---------
T ss_pred chHHHHHHHHHHHhhcchhheEEEEecCCCCCeeEEEEEecCCCcccccC
Confidence 99999999999999999999999999999778999999999998888876
No 2
>3izc_W 60S ribosomal protein RPL22 (L22E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_W 3u5e_U 3u5i_U 4b6a_U
Probab=100.00 E-value=1.9e-69 Score=400.31 Aligned_cols=119 Identities=44% Similarity=0.768 Sum_probs=103.5
Q ss_pred cccccccCccceeEEEEeecCccCCCccchhhHHHhhhcceeeccccCCCCCceEEEEeCCEEEEEecccccchhhhhHH
Q 033169 5 AAAAGVKGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYLT 84 (125)
Q Consensus 5 ~~~~~~~~kk~~~kF~iDCt~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~r~~~ki~V~s~~~fsKRYLKYLt 84 (125)
|+|..++++|+.++|+||||+||+|||||+|+||+||||||||||++||||+.|+|++++++|+|+|++|||||||||||
T Consensus 1 map~~~~~kk~~~kF~iDct~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s~~~fSKRYLKYLT 80 (121)
T 3izc_W 1 MAPNTSRKQKIAKTFTVDVSSPTENGVFDPASYAKYLIDHIKVEGAVGNLGNAVTVTEDGTVVTVVSTAKFSGKYLKYLT 80 (121)
T ss_dssp -----CCCCEEEEEEECCCCCSSSCSCCCSHHHHHHHHHHHHHHSSSSSCCCCEEEEECSSEEEEEESSSCSHHHHHHHH
T ss_pred CCCccccccceeEEEEEEcCCcccCCeecHHHHHHHHHHHheecCcccccCceEEEEEcCCEEEEEeccccchHHHHHHH
Confidence 56777777888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhccCCCceEEEEeccCCCCeEEEEeeeecCCCCCCCC
Q 033169 85 KKYLKKHNVRDWLRVIASNKDRSVYELRYFNIAENEGEEED 125 (125)
Q Consensus 85 KKyLKk~~LRdwlrVvA~~K~~~~YeLrYfni~~d~~e~ee 125 (125)
|||||||+|||||||||++| ++||||||||++|||||||
T Consensus 81 KKyLKK~~LRDwlRVVa~~K--~~YeLryf~I~~de~eee~ 119 (121)
T 3izc_W 81 KKYLKKNQLRDWIRFVSTKT--NEYRLAFYQVTPEEDEEED 119 (121)
T ss_dssp HHHHTTSSSCCCCCCSSSCS--SCEEEECCCC---------
T ss_pred HHHhhhccccceEEEEecCC--CeEEEEEEeeCCCcccccc
Confidence 99999999999999999999 9999999999987665543
No 3
>4a18_M RPL22, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_M 4a1b_M 4a1d_M
Probab=100.00 E-value=1.1e-66 Score=384.27 Aligned_cols=110 Identities=52% Similarity=0.901 Sum_probs=99.2
Q ss_pred cCccceeEEEEeecCccCCCccchhhHHHhhhcceeeccccCCCCCceEEEEeCCEEEEEecccccchhhhhHHHhhhhc
Q 033169 11 KGKKKGATFVIDCGKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVTSDSNFSKRYLKYLTKKYLKK 90 (125)
Q Consensus 11 ~~kk~~~kF~iDCt~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~r~~~ki~V~s~~~fsKRYLKYLtKKyLKk 90 (125)
+.+|+.++|+||||+||||||||+|+||+||||||||||++||||+.|+|++++++|+|+|++|||||||||||||||||
T Consensus 9 ~~kk~~~kF~iDct~PveD~I~d~a~fekfL~erIKV~gk~gnLg~~V~i~~~~~ki~V~s~~~fSKRYLKYLTKKyLKK 88 (118)
T 4a18_M 9 QVKKVNLGFKIDCSQPVEDKVILIGEFAEFLKSKIKVGGKLGNLGENITISNDDKKINVQSTIPFSKRYLKYLTKKYLKK 88 (118)
T ss_dssp ---CCCEEEEEECHHHHHTTCCCHHHHHHHHHHHCCBTTBSSCCTTTEEEEECSSEEEEEESSCCCHHHHHHHHHHHHHH
T ss_pred ccceeeEEEEEEccCcccCceecHHHHHHHHHHHhhccCcccccCCeEEEEEcCCEEEEEeccccchHHHHHHHHHHhhh
Confidence 45688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEeccCCCCeEEEEeeeecCCCCC
Q 033169 91 HNVRDWLRVIASNKDRSVYELRYFNIAENEGE 122 (125)
Q Consensus 91 ~~LRdwlrVvA~~K~~~~YeLrYfni~~d~~e 122 (125)
|+|||||||||++| ++||||||||++||||
T Consensus 89 ~~LRDwlRVVA~~K--~~YeLrYfnI~~de~e 118 (118)
T 4a18_M 89 QDLRNYLYVTSSDK--NSYQLRYFNIQQDQAE 118 (118)
T ss_dssp TTCTTTEEEEEEET--TEEEEEECC-------
T ss_pred ccccceEEEEecCC--CeEEEEEEeccCcCCC
Confidence 99999999999999 9999999999987664
No 4
>3me0_B PAPG protein; immunoglobulin pilin chaperone, chaperone, fimbrium, immunog domain; HET: MSE; 2.03A {Escherichia coli} PDB: 2wmp_B
Probab=41.95 E-value=2.2 Score=31.49 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=32.8
Q ss_pred cceeEEEEeecCccCCCccch-hhH-------HHh-------hhcceeeccc-cCCCCCceEEEEeCCEEEEEec
Q 033169 14 KKGATFVIDCGKPVEDKIMDI-ASL-------EKF-------LQERIKVGGK-AGALGDSVTVTREKTKITVTSD 72 (125)
Q Consensus 14 k~~~kF~iDCt~PveD~I~d~-a~f-------ekf-------L~erIKV~gk-~gnLg~~V~i~r~~~ki~V~s~ 72 (125)
....-|+|-|+.|+. -+|.+ ++. ++| |-.+|.+||. .|.++-.....-.+ .++|.|.
T Consensus 32 t~~~~isV~Ct~p~~-Vki~lt~~~~p~~~~~~~f~V~L~ngl~S~l~lNG~~~~e~~~~~~~~~s~-tvtV~S~ 104 (128)
T 3me0_B 32 YAAQTLSVSCDVPAN-IRFMLLRNTTPTYSHGKKFSVGLGHGWDSIVSVNGVDTGETTMRWYKAGTQ-NLTIGSR 104 (128)
T ss_dssp EEEEEEEEEESSCEE-EEEEEEECSCCSSCCTTSCEEEEETTEEEEEEETTBCSSEEEEEESSSEEE-EEEEEEE
T ss_pred EEeeEEEEEeCCCce-EEEEEecCCcccccccCceEEecCCCeEEEEEECCeeccceeEEEEecCCc-EEEEEEE
Confidence 345689999999974 34444 311 344 5678899988 65554322221112 2666664
No 5
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=29.79 E-value=48 Score=22.27 Aligned_cols=39 Identities=26% Similarity=0.393 Sum_probs=30.0
Q ss_pred chhhHHHhhhcceeeccccCCCCCceEEEEeCCEEEEE-eccc
Q 033169 33 DIASLEKFLQERIKVGGKAGALGDSVTVTREKTKITVT-SDSN 74 (125)
Q Consensus 33 d~a~fekfL~erIKV~gk~gnLg~~V~i~r~~~ki~V~-s~~~ 74 (125)
|+..||+-|.|-|.- +..+...|+-+-++|.+.+. +.+|
T Consensus 11 dleafekalkemirq---arkfagtvtytldgndleiritgvp 50 (85)
T 2kl8_A 11 DLEAFEKALKEMIRQ---ARKFAGTVTYTLDGNDLEIRITGVP 50 (85)
T ss_dssp SHHHHHHHHHHHHHH---HTTTTCEEEEEECSSCEEEEEESCC
T ss_pred cHHHHHHHHHHHHHH---HHhhcceEEEEecCCeeEEEEecCh
Confidence 578999999998864 45577889999999987763 3455
No 6
>2l9b_B MRNA 3'-END-processing protein RNA14; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=29.16 E-value=25 Score=22.29 Aligned_cols=20 Identities=20% Similarity=0.622 Sum_probs=17.2
Q ss_pred CCCccchhhHHHhhhcceee
Q 033169 28 EDKIMDIASLEKFLQERIKV 47 (125)
Q Consensus 28 eD~I~d~a~fekfL~erIKV 47 (125)
.+.++|+..|..||.|...+
T Consensus 25 K~~~ld~~klv~~L~dqV~i 44 (53)
T 2l9b_B 25 NTNLLDAQKLVNFLNDQVEI 44 (53)
T ss_dssp CSSCCCHHHHHHHHHHTCCC
T ss_pred cccccCHHHHHHHHHhcccc
Confidence 57789999999999997665
No 7
>3sgr_A Tandem repeat of amyloid-related segment of alpha crystallin residues 90-100 mutant...; amyloid oligomer, beta cylindrin, protein fibril; 2.17A {Homo sapiens}
Probab=27.29 E-value=6.7 Score=21.25 Aligned_cols=19 Identities=47% Similarity=0.768 Sum_probs=11.3
Q ss_pred hhcceeeccccCCCCCceE
Q 033169 41 LQERIKVGGKAGALGDSVT 59 (125)
Q Consensus 41 L~erIKV~gk~gnLg~~V~ 59 (125)
|-+-|.|+||..-||+.|.
T Consensus 6 lgdvievggklkvlgdvie 24 (25)
T 3sgr_A 6 LGDVIEVGGKLKVLGDVIE 24 (26)
T ss_dssp EEEEEEETTEEEEEEEEEE
T ss_pred eeeeeeeCcEEEEeeeEEe
Confidence 3455667777666665543
No 8
>2b3g_B Cellular tumor antigen P53; OB-fold, ssDNA mimicry, replication; 1.60A {Homo sapiens}
Probab=23.86 E-value=33 Score=18.99 Aligned_cols=20 Identities=15% Similarity=0.494 Sum_probs=16.8
Q ss_pred cCccCCCccchhhHHHhhhc
Q 033169 24 GKPVEDKIMDIASLEKFLQE 43 (125)
Q Consensus 24 t~PveD~I~d~a~fekfL~e 43 (125)
++.++|-.+++.+.+++|.+
T Consensus 5 sqa~ddlmlspddi~qw~s~ 24 (28)
T 2b3g_B 5 SQAMDDLMLSPDDIEQWFTE 24 (28)
T ss_dssp GGTTGGGGCCHHHHHHHHHC
T ss_pred hhHHHhhhcChHHHHHHhhc
Confidence 45678999999999999865
No 9
>4a1y_A Myelin P2 protein; transport; HET: PLM; 1.20A {Homo sapiens} PDB: 2wut_A* 4a1h_A* 1pmp_A* 1yiv_A*
Probab=23.74 E-value=27 Score=24.79 Aligned_cols=42 Identities=21% Similarity=0.502 Sum_probs=28.0
Q ss_pred chhhHHHhhhcceeec---cccCC-CCCceEEEEeCCEEEEEecccc
Q 033169 33 DIASLEKFLQERIKVG---GKAGA-LGDSVTVTREKTKITVTSDSNF 75 (125)
Q Consensus 33 d~a~fekfL~erIKV~---gk~gn-Lg~~V~i~r~~~ki~V~s~~~f 75 (125)
+..+|+.||.. +=|+ -+.++ +.-.+.|+.+++.+++.+..+|
T Consensus 14 ~sENfdeylka-lGv~~~~Rk~a~~~kp~~~I~~~Gd~~tikt~s~~ 59 (133)
T 4a1y_A 14 SSENFDDYMKA-LGVGLATRKLGNLAKPTVIISKKGDIITIRTESTF 59 (133)
T ss_dssp EEESHHHHHHH-HTCCHHHHHHHHHCCCEEEEEEETTEEEEEEEETT
T ss_pred eccCHHHHHHH-cCCCHHHHHhHhhCCCeEEEEECCCEEEEEEecCC
Confidence 45789999954 2222 12222 3457889999999999887665
No 10
>2lpe_A Kinase suppressor of RAS 1; SAM domain, CC-SAM, coiled-coil, signaling protein, scaffold protein; NMR {Mus musculus}
Probab=23.14 E-value=6.6 Score=29.55 Aligned_cols=13 Identities=23% Similarity=0.611 Sum_probs=11.0
Q ss_pred CCCceEEEEeccC
Q 033169 92 NVRDWLRVIASNK 104 (125)
Q Consensus 92 ~LRdwlrVvA~~K 104 (125)
.|++|||||.-+.
T Consensus 85 ~l~~WLrvVgl~~ 97 (149)
T 2lpe_A 85 RFSDWLYIFNVRP 97 (149)
T ss_dssp CSTTTHHHHTCCH
T ss_pred hHHHHHHHhccCH
Confidence 5999999997766
No 11
>1ggl_A Protein (cellular retinol-binding protein III); carrier, transport protein; 2.31A {Homo sapiens} SCOP: b.60.1.2
Probab=22.39 E-value=54 Score=23.09 Aligned_cols=42 Identities=21% Similarity=0.349 Sum_probs=27.0
Q ss_pred chhhHHHhhhcceeecc---ccCC-CCCceEEEEeCCEEEEEecccc
Q 033169 33 DIASLEKFLQERIKVGG---KAGA-LGDSVTVTREKTKITVTSDSNF 75 (125)
Q Consensus 33 d~a~fekfL~erIKV~g---k~gn-Lg~~V~i~r~~~ki~V~s~~~f 75 (125)
+..+|+.||.. +=|+= +.++ +.-.+.|+.+++.+++.+..+|
T Consensus 12 sseNfdeylka-lGv~~~~rk~a~~~kp~~ei~~~Gd~~~ikt~s~~ 57 (134)
T 1ggl_A 12 SQKNMEDYLQA-LNISLAVRKIALLLKPDKEIEHQGNHMTVRTLSTF 57 (134)
T ss_dssp EEECHHHHHHH-TTCCTTTTTTGGGCCCEEEEEECSSEEEEEEECSS
T ss_pred cCcCHHHHHHH-hCCCHHHHhhhhcCCcEEEEEEcCCEEEEEEEcCC
Confidence 45689999965 22321 2222 2346888999999988876664
No 12
>3v46_A Cell division control protein 73; RAS-like fold, non-GTP binding, protein interaction surface, transcription elongation factor; 1.55A {Saccharomyces cerevisiae} PDB: 4dm4_A
Probab=21.85 E-value=1.1e+02 Score=22.93 Aligned_cols=39 Identities=18% Similarity=0.317 Sum_probs=27.4
Q ss_pred cCCCccchhhHHHhhhcceeeccc--cCCCCCceEEEEeCC
Q 033169 27 VEDKIMDIASLEKFLQERIKVGGK--AGALGDSVTVTREKT 65 (125)
Q Consensus 27 veD~I~d~a~fekfL~erIKV~gk--~gnLg~~V~i~r~~~ 65 (125)
..-.++.+.+-.+||++-.=|.-- ...-++.|.|.+...
T Consensus 22 s~sSlitm~NiK~FLedg~fv~~~~~~~~~~~~v~I~r~~~ 62 (170)
T 3v46_A 22 AASSILTVANIKQFLLESKYVNPRNLPSVPNGLVNIEKNFE 62 (170)
T ss_dssp CTTCSSCTTTHHHHHHHCCCCCGGGSCCCTTSEEEEEECCT
T ss_pred CccchhhHHHHHHHHhcCeecChhhcccCCCCeEEEEEecC
Confidence 346899999999999998777422 222246788888743
No 13
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=20.80 E-value=38 Score=24.74 Aligned_cols=13 Identities=46% Similarity=0.869 Sum_probs=10.9
Q ss_pred CeEEEEeeeecCC
Q 033169 107 SVYELRYFNIAEN 119 (125)
Q Consensus 107 ~~YeLrYfni~~d 119 (125)
..|.+||||....
T Consensus 44 t~Y~IRYFQ~dGk 56 (124)
T 2l7q_A 44 TVYTLRYFQPDGK 56 (124)
T ss_dssp CCCEEEEECCSSC
T ss_pred cEEEEEEEeecCC
Confidence 6899999998754
No 14
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=20.60 E-value=38 Score=23.35 Aligned_cols=44 Identities=7% Similarity=0.086 Sum_probs=23.8
Q ss_pred cCCCCCceEEEEeC-C-EEEEEecccccchhhhhHHHhhhhccCCCceEEEEeccC
Q 033169 51 AGALGDSVTVTREK-T-KITVTSDSNFSKRYLKYLTKKYLKKHNVRDWLRVIASNK 104 (125)
Q Consensus 51 ~gnLg~~V~i~r~~-~-ki~V~s~~~fsKRYLKYLtKKyLKk~~LRdwlrVvA~~K 104 (125)
.|+|+....+.-.. + .-..+-.+.++ +|- +.+--||++|+|-++
T Consensus 17 iGrL~~DPelR~t~~g~~~va~f~lAv~-~~~---------~~~~t~fi~vv~wgk 62 (108)
T 3koj_A 17 QATVVEAPQLRYAQDNQTPVAEMVVQFP-GLS---------SKDAPARLKVVGWGA 62 (108)
T ss_dssp EEEEEEEEEEEECTTSSSEEEEEEEEEC-C--------------CCEEEEEEEETH
T ss_pred EEEECCCCEEEEeCCCCEEEEEEEEEEC-Ccc---------cCCCcEEEEEEEEhH
Confidence 57777777765443 2 22223344444 331 234688999999765
Done!