BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033170
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YAX|A Chain A, Cystal Structure Analysis Of S.Typhimurium Phoq Sensor
Domain With Calcium
pdb|1YAX|B Chain B, Cystal Structure Analysis Of S.Typhimurium Phoq Sensor
Domain With Calcium
pdb|1YAX|C Chain C, Cystal Structure Analysis Of S.Typhimurium Phoq Sensor
Domain With Calcium
pdb|1YAX|D Chain D, Cystal Structure Analysis Of S.Typhimurium Phoq Sensor
Domain With Calcium
Length = 153
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 28 LRMSSHHYISVSVDENGASRFDDHAAH-----VNPEPNKGRETEEVGTGVYPTGSSIPDC 82
L+ + H I +VD +DH+A V + + T V +YP + +P
Sbjct: 71 LKTNGFHEIETNVDATSTLLSEDHSAQEKLKEVREDDDDAEMTHSVAVNIYPATARMPQL 130
Query: 83 SHACGPCFPCK 93
+ P +
Sbjct: 131 TIVVVDTIPIE 141
>pdb|1MGO|A Chain A, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant
pdb|1MGO|B Chain B, Horse Liver Alcohol Dehydrogenase Phe93ala Mutant
Length = 374
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 34 HYISVSVDENGASRFDDHAAH---VNPEPN-KGRE----TEEVGTGVY---PTGSSIPDC 82
H + + + G R DDH V P P G E E +G GV P IP
Sbjct: 34 HEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLA 93
Query: 83 SHACGPCFPCKRVMVSFKCSVAESCPI------VYRCMCRGKYYH 121
+ CG C CK +F S P R CRGK H
Sbjct: 94 TPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIH 138
>pdb|1AXE|A Chain A, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
pdb|1AXE|B Chain B, Crystal Structure Of The Active-Site Mutant Phe93->trp Of
Horse Liver Alcohol Dehydrogenase In Complex With Nad
And Inhibitor Trifluoroethanol
Length = 374
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 34 HYISVSVDENGASRFDDHAAH---VNPEPN-KGRE----TEEVGTGVY---PTGSSIPDC 82
H + + + G R DDH V P P G E E +G GV P IP
Sbjct: 34 HEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLW 93
Query: 83 SHACGPCFPCKRVMVSFKCSVAESCPI------VYRCMCRGKYYH 121
+ CG C CK +F S P R CRGK H
Sbjct: 94 TPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIH 138
>pdb|1A71|A Chain A, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A71|B Chain B, Ternary Complex Of An Active Site Double Mutant Of Horse
Liver Alcohol Dehydrogenase, Phe93>trp, Val203>ala With
Nad And Trifluoroethanol
pdb|1A72|A Chain A, An Active-Site Double Mutant (Phe93->trp, Val203->ala) Of
Horse Liver Alcohol Dehydrogenase In Complex With The
Isosteric Nad Analog Cpad
Length = 374
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 34 HYISVSVDENGASRFDDHAAH---VNPEPN-KGRE----TEEVGTGVY---PTGSSIPDC 82
H + + + G R DDH V P P G E E +G GV P IP
Sbjct: 34 HEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLW 93
Query: 83 SHACGPCFPCKRVMVSFKCSVAESCPI------VYRCMCRGKYYH 121
+ CG C CK +F S P R CRGK H
Sbjct: 94 TPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIH 138
>pdb|3TW9|A Chain A, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109
pdb|3TW9|B Chain B, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109
pdb|3TW9|C Chain C, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109
pdb|3TW9|D Chain D, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109
pdb|3TWA|A Chain A, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Glycerol
pdb|3TWA|B Chain B, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Glycerol
pdb|3TWA|C Chain C, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Glycerol
pdb|3TWA|D Chain D, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Glycerol
pdb|3TWA|E Chain E, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Glycerol
pdb|3TWB|A Chain A, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Gluconic Acid
pdb|3TWB|B Chain B, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Gluconic Acid
pdb|3TWB|C Chain C, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Gluconic Acid
pdb|3TWB|D Chain D, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Gluconic Acid
pdb|3TWB|E Chain E, Crystal Structure Of Gluconate Dehydratase (Target
Efi-501679) From Salmonella Enterica Subsp. Enterica
Serovar Enteritidis Str. P125109 Complexed With
Magnesium And Gluconic Acid
Length = 442
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 44 GASRFDDHAAHVNPEPNKGRETEEVGTGVYPTGSSIPDCSHACGP 88
G D A++N +P G + +E YP IP + A P
Sbjct: 391 GCPEIDHGYAYLNDKPGLGIDIDEAKAAKYPCEGGIPSWTMARTP 435
>pdb|3OQ6|A Chain A, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed
With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol
pdb|3OQ6|B Chain B, Horse Liver Alcohol Dehydrogenase A317c Mutant Complexed
With Nad+ And 2,3,4,5,6-Pentafluorobenzyl Alcohol
Length = 374
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 34 HYISVSVDENGASRFDDHAAH---VNPEPN-KGRE----TEEVGTGVY---PTGSSIPDC 82
H + + + G R DDH V P P G E E +G GV P IP
Sbjct: 34 HEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLF 93
Query: 83 SHACGPCFPCKRVMVSFKCSVAESCPI------VYRCMCRGKYYH 121
+ CG C CK +F S P R CRGK H
Sbjct: 94 TPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIH 138
>pdb|1QLH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nad Double
Mutant Of Gly 293 Ala And Pro 295 Thr
pdb|1QLJ|A Chain A, Horse Liver Alcohol Dehydrogenase Apo Enzyme Double Mutant
Of Gly 293 Ala And Pro 295 Thr
Length = 374
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 34 HYISVSVDENGASRFDDHAAH---VNPEPN-KGRE----TEEVGTGVY---PTGSSIPDC 82
H + + + G R DDH V P P G E E +G GV P IP
Sbjct: 34 HEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLF 93
Query: 83 SHACGPCFPCKRVMVSFKCSVAESCPI------VYRCMCRGKYYH 121
+ CG C CK +F S P R CRGK H
Sbjct: 94 TPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIH 138
>pdb|1N8K|A Chain A, Horse Liver Alcohol Dehydrogenase Val292thr Mutant
Complexed To Nad+ And Pyrazole
pdb|1N8K|B Chain B, Horse Liver Alcohol Dehydrogenase Val292thr Mutant
Complexed To Nad+ And Pyrazole
Length = 374
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 34 HYISVSVDENGASRFDDHAAH---VNPEPN-KGRE----TEEVGTGVY---PTGSSIPDC 82
H + + + G R DDH V P P G E E +G GV P IP
Sbjct: 34 HEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLF 93
Query: 83 SHACGPCFPCKRVMVSFKCSVAESCPI------VYRCMCRGKYYH 121
+ CG C CK +F S P R CRGK H
Sbjct: 94 TPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIH 138
>pdb|6ADH|A Chain A, Structure Of Triclinic Ternary Complex Of Horse Liver
Alcohol Dehydrogenase At 2.9 Angstroms Resolution
pdb|6ADH|B Chain B, Structure Of Triclinic Ternary Complex Of Horse Liver
Alcohol Dehydrogenase At 2.9 Angstroms Resolution
pdb|2OHX|A Chain A, Refined Crystal Structure Of Liver Alcohol Dehydrogenase-
Nadh Complex At 1.8 Angstroms Resolution
pdb|2OHX|B Chain B, Refined Crystal Structure Of Liver Alcohol Dehydrogenase-
Nadh Complex At 1.8 Angstroms Resolution
pdb|2OXI|A Chain A, Refined Crystal Structure Of Cu-Substituted Alcohol
Dehydrogenase At 2.1 Angstroms Resolution
pdb|2OXI|B Chain B, Refined Crystal Structure Of Cu-Substituted Alcohol
Dehydrogenase At 2.1 Angstroms Resolution
pdb|1HLD|A Chain A, Structures Of Horse Liver Alcohol Dehydrogenase Complexed
With Nad+ And Substituted Benzyl Alcohols
pdb|1HLD|B Chain B, Structures Of Horse Liver Alcohol Dehydrogenase Complexed
With Nad+ And Substituted Benzyl Alcohols
pdb|1ADB|A Chain A, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|1ADB|B Chain B, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|1ADC|A Chain A, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|1ADC|B Chain B, Crystallographic Studies Of Isosteric Nad Analogues Bound
To Alcohol Dehydrogenase: Specificity And Substrate
Binding In Two Ternary Complexes
pdb|3BTO|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|3BTO|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3s)3-Butylthiolane 1-Oxide
pdb|1LDY|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDY|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
Cyclohexyl Formamide (Cxf)
pdb|1LDE|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1LDE|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
N-Formyl Piperdine
pdb|1BTO|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1BTO|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed To Nadh And
(1s, 3r)3-Butylthiolane 1-Oxide
pdb|1HET|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing A Hydroxide Adduct To Nadh
pdb|1HET|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing A Hydroxide Adduct To Nadh
pdb|1HEU|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HEU|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HF3|A Chain A, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1HF3|B Chain B, Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase
Containing Cadmium And A Hydroxide Adduct To Nadh
pdb|1MG0|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1MG0|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1MG0|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1MG0|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2, 3-Difluorobenzyl Alcohol
pdb|1N92|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
4- Iodopyrazole
pdb|1N92|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
4- Iodopyrazole
pdb|1P1R|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1P1R|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1P1R|C Chain C, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1P1R|D Chain D, Horse Liver Alcohol Dehydrogenase Complexed With Nadh And
R- N-1-Methylhexylformamide
pdb|1YE3|A Chain A, Horse Liver Alcohol Dehydrogenase Apoenzyme
pdb|2JHF|A Chain A, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHF|B Chain B, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHG|A Chain A, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|2JHG|B Chain B, Structural Evidence For A Ligand Coordination Switch In
Liver Alcohol Dehydrogenase
pdb|1ADF|A Chain A, Crystallographic Studies Of Two Alcohol
Dehydrogenase-Bound Analogs Of Thiazole-4-Carboxamide
Adenine Dinucleotide (Tad), The Active Anabolite Of The
Antitumor Agent Tiazofurin
pdb|1ADG|A Chain A, Crystallographic Studies Of Two Alcohol
Dehydrogenase-Bound Analogs Of Thiazole-4-Carboxamide
Adenine Dinucleotide (Tad), The Active Anabolite Of The
Antitumor Agent Tiazofurin
pdb|5ADH|A Chain A, Interdomain Motion In Liver Alcohol Dehydrogenase.
Structural And Energetic Analysis Of The Hinge Bending
Mode
pdb|7ADH|A Chain A, Three-Dimensional Structure Of Isonicotinimidylated Liver
Alcohol Dehydrogenase
pdb|8ADH|A Chain A, Interdomain Motion In Liver Alcohol Dehydrogenase.
Structural And Energetic Analysis Of The Hinge Bending
Mode
pdb|4DWV|A Chain A, Horse Alcohol Dehydrogenase Complexed With Nad+ And
2,3,4,5,6- Pentafluorobenzyl Alcohol
pdb|4DWV|B Chain B, Horse Alcohol Dehydrogenase Complexed With Nad+ And
2,3,4,5,6- Pentafluorobenzyl Alcohol
pdb|4DXH|A Chain A, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2,2,2- Trifluoroethanol
pdb|4DXH|B Chain B, Horse Liver Alcohol Dehydrogenase Complexed With Nad+ And
2,2,2- Trifluoroethanol
Length = 374
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 34 HYISVSVDENGASRFDDHAAH---VNPEPN-KGRE----TEEVGTGVY---PTGSSIPDC 82
H + + + G R DDH V P P G E E +G GV P IP
Sbjct: 34 HEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLF 93
Query: 83 SHACGPCFPCKRVMVSFKCSVAESCPI------VYRCMCRGKYYH 121
+ CG C CK +F S P R CRGK H
Sbjct: 94 TPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIH 138
>pdb|1AXG|A Chain A, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|B Chain B, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|C Chain C, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
pdb|1AXG|D Chain D, Crystal Structure Of The Val203->ala Mutant Of Liver
Alcohol Dehydrogenase Complexed With Cofactor Nad And
Inhibitor Trifluoroethanol Solved To 2.5 Angstrom
Resolution
Length = 374
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 34 HYISVSVDENGASRFDDHAAH---VNPEPN-KGRE----TEEVGTGVY---PTGSSIPDC 82
H + + + G R DDH V P P G E E +G GV P IP
Sbjct: 34 HEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLF 93
Query: 83 SHACGPCFPCKRVMVSFKCSVAESCPI------VYRCMCRGKYYH 121
+ CG C CK +F S P R CRGK H
Sbjct: 94 TPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIH 138
>pdb|1JU9|A Chain A, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
pdb|1JU9|B Chain B, Horse Liver Alcohol Dehydrogenase Val292ser Mutant
Length = 374
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 38/105 (36%), Gaps = 17/105 (16%)
Query: 34 HYISVSVDENGASRFDDHAAH---VNPEPN-KGRE----TEEVGTGVY---PTGSSIPDC 82
H + + + G R DDH V P P G E E +G GV P IP
Sbjct: 34 HEVRIKMVATGICRSDDHVVSGTLVTPLPVIAGHEAAGIVESIGEGVTTVRPGDKVIPLF 93
Query: 83 SHACGPCFPCKRVMVSFKCSVAESCPI------VYRCMCRGKYYH 121
+ CG C CK +F S P R CRGK H
Sbjct: 94 TPQCGKCRVCKHPEGNFCLKNDLSMPRGTMQDGTSRFTCRGKPIH 138
>pdb|3P1V|A Chain A, Crystal Structure Of A Metallo-Endopeptidases
(Bacova_00663) From Bacteroides Ovatus At 1.93 A
Resolution
pdb|3P1V|B Chain B, Crystal Structure Of A Metallo-Endopeptidases
(Bacova_00663) From Bacteroides Ovatus At 1.93 A
Resolution
Length = 407
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 37 SVSVDENGASRFDDHAAHVNPEPNKGRETEEVGTGVYPTGSSIPDCSHACGPCFPCKRVM 96
++S N AS++ D P P E ++ GVY G + P + C+
Sbjct: 327 NISTRVNFASKWKDXLPSGAPIPTPIAEKKKYPVGVYEGGGYSAKGIYR--PAYDCRXKT 384
Query: 97 VSFKCSVAESCPIVYRCMCRGKYYHVP 123
+ E CP+ R + R ++VP
Sbjct: 385 NEY----PEFCPVCQRAIRRXIEFYVP 407
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 64 ETEEVGTGVYPTGSSIPDCSHACGP 88
E +EVG G+YP SI +H+C P
Sbjct: 191 EMQEVGVGLYP---SISLLNHSCDP 212
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 64 ETEEVGTGVYPTGSSIPDCSHACGP 88
E +EVG G+YP SI +H+C P
Sbjct: 225 EMQEVGVGLYP---SISLLNHSCDP 246
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 64 ETEEVGTGVYPTGSSIPDCSHACGP 88
E +EVG G+YP SI +H+C P
Sbjct: 189 EMQEVGVGLYP---SISLLNHSCDP 210
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 64 ETEEVGTGVYPTGSSIPDCSHACGP 88
E +EVG G+YP SI +H+C P
Sbjct: 190 EMQEVGVGLYP---SISLLNHSCDP 211
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 64 ETEEVGTGVYPTGSSIPDCSHACGP 88
E +EVG G+YP SI +H+C P
Sbjct: 189 EMQEVGVGLYP---SISLLNHSCDP 210
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 25.8 bits (55), Expect = 6.5, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 64 ETEEVGTGVYPTGSSIPDCSHACGP 88
E +EVG G+YP SI +H+C P
Sbjct: 190 EXQEVGVGLYP---SISLLNHSCDP 211
>pdb|4IHC|A Chain A, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|B Chain B, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|C Chain C, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|D Chain D, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|E Chain E, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|F Chain F, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|G Chain G, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
pdb|4IHC|H Chain H, Crystal Structure Of Probable Mannonate Dehydratase
Dd703_0947 (target Efi-502222) From Dickeya Dadantii
Ech703
Length = 440
Score = 25.8 bits (55), Expect = 6.6, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 44 GASRFDDHAAHVNPEPNKGRETEEVGTGVYPTGSSIPDCSHACGP 88
G D A+VN +P G + E YP IP + A P
Sbjct: 389 GCPEIDQGYAYVNDKPGLGIDINETLAEKYPCDGGIPSWTMARTP 433
>pdb|2KL4|A Chain A, Nmr Structure Of The Protein Nb7804a
Length = 118
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 22 FSTGYSLRMSSHHYISVSVDENGASRFDDHAAHVNPEPNKG 62
F G+S +S H++SVS +E G S+F D A KG
Sbjct: 54 FIIGFS---TSKHHLSVSPEEIGISQFADAIAQAGYSATKG 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.137 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,032,583
Number of Sequences: 62578
Number of extensions: 155431
Number of successful extensions: 343
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 24
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)