BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033170
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LC53|EPF2_ARATH Protein EPIDERMAL PATTERNING FACTOR 2 OS=Arabidopsis thaliana
GN=EPF2 PE=2 SV=1
Length = 120
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 61/90 (67%), Gaps = 7/90 (7%)
Query: 37 SVSVDENGASRFDDHAAHVNPE--PNKGRETEEVGTGVYPTGSSIPDCSHACGPCFPCKR 94
+V+ E + + H E N G E E +YPTGSS+PDCS+ACG C PCKR
Sbjct: 34 TVNGGEKKNADIEQAQTHHKKEISKNGGVEME-----MYPTGSSLPDCSYACGACSPCKR 88
Query: 95 VMVSFKCSVAESCPIVYRCMCRGKYYHVPS 124
VM+SF+CSVAESC ++YRC CRG+YYHVPS
Sbjct: 89 VMISFECSVAESCSVIYRCTCRGRYYHVPS 118
>sp|C4B8C5|EPFL7_ARATH EPIDERMAL PATTERNING FACTOR-like protein 7 OS=Arabidopsis thaliana
GN=EPFL7 PE=2 SV=1
Length = 172
Score = 85.1 bits (209), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 45/50 (90%)
Query: 75 TGSSIPDCSHACGPCFPCKRVMVSFKCSVAESCPIVYRCMCRGKYYHVPS 124
+GSSIPDCS+ACGPC PCK V++S CS +E+CP+VY+C+C+GKYYHVPS
Sbjct: 121 SGSSIPDCSNACGPCKPCKLVVISSTCSASEACPLVYKCLCKGKYYHVPS 170
>sp|Q8S8I4|EPF1_ARATH Protein EPIDERMAL PATTERNING FACTOR 1 OS=Arabidopsis thaliana
GN=EPF1 PE=2 SV=1
Length = 104
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/55 (58%), Positives = 38/55 (69%), Gaps = 3/55 (5%)
Query: 72 VYPTGSSIPDCSHACGPCFPCKRVMVSFKCSV---AESCPIVYRCMCRGKYYHVP 123
V GS +PDCSHACG C PC+ VMVSF C+ AE+CP+ Y+CMC K Y VP
Sbjct: 50 VQVAGSRLPDCSHACGSCSPCRLVMVSFVCASVEEAETCPMAYKCMCNNKSYPVP 104
>sp|Q1PEY6|EPFL6_ARATH EPIDERMAL PATTERNING FACTOR-like protein 6 OS=Arabidopsis thaliana
GN=EPFL6 PE=2 SV=1
Length = 156
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 42/109 (38%), Gaps = 6/109 (5%)
Query: 15 FLILFMFFSTGYSLRMSSHHYISVSVDENGASRFDDHAAHVNPEPNKGRETEEVGTGVYP 74
F I S+ Y+ +S + E G S + +K E + G+
Sbjct: 49 FTITPTSTSSPYNRNSNSGTLGNFYAKEEGKSTVVIKKTRKIGDRSKEAELRRILRGL-- 106
Query: 75 TGSSIPDCSHACGPCFPCKRVMVSFKCS---VAESCPIVYRCMCRGKYY 120
GSS P CS CG C PCK V V AE P +RC C K Y
Sbjct: 107 -GSSPPRCSSKCGRCTPCKPVHVPVPPGTPVTAEYYPEAWRCKCGNKLY 154
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1
Length = 514
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 76 GSSIPDCSHACGPCFPCK-RVMVSFKCSVAESCPIVYRCMCRGKYYH 121
GS P+C++ C C PCK ++++ + E P + C GK YH
Sbjct: 467 GSRPPNCTNKCHGCSPCKAKLVIVHRIMPQEYYPQRWMCSRHGKIYH 513
>sp|Q2V3I3|EPFL4_ARATH EPIDERMAL PATTERNING FACTOR-like protein 4 OS=Arabidopsis thaliana
GN=EPFL4 PE=3 SV=1
Length = 109
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Query: 76 GSSIPDCSHACGPCFPCKRVMVSFKCSVA---ESCPIVYRCMCRGKYY 120
GSS P C CG C PCK V V + ++ E P +RC C K +
Sbjct: 60 GSSPPTCRSKCGKCQPCKPVHVPIQPGLSMPLEYYPEAWRCKCGNKLF 107
>sp|B5YL10|CAS1B_THEYD CRISPR-associated endonuclease Cas1 2 OS=Thermodesulfovibrio
yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
GN=cas1-2 PE=3 SV=1
Length = 330
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 22 FSTGYSLRMSSHHYISVSVDENGASRFDDHAAHVNPEP-----NKGRETEEVGTGVYPTG 76
++GY + + HY+ N A +F A + N+G+E E+ + +
Sbjct: 81 LNSGYMILKQAEHYLDTGKRLNLAEKFVSGAIENIKKVLIYYHNRGKELSEIISKIQEIA 140
Query: 77 SSIPDCS 83
++IPDCS
Sbjct: 141 TNIPDCS 147
>sp|Q6FW77|BBP_CANGA Branchpoint-bridging protein OS=Candida glabrata (strain ATCC 2001
/ CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=BBP
PE=3 SV=1
Length = 465
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 41 DENGASRFDDHAAHVN-------PEPNKGRETEEVGTGVYPTGSSIPDCSH 84
+ NG+SRF+D++ ++N P+P ET + PT SS SH
Sbjct: 340 NHNGSSRFNDNSKYLNNGNKRATPQPELELETSHKRQQINPTSSSQDTLSH 390
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1
Length = 514
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 77 SSIPDCSHACGPCFPCK-RVMVSFKCSVAESCPIVYRCMCRGKYYH 121
SS P+C + C C PCK ++++ + P + C C K Y+
Sbjct: 468 SSPPNCKNKCKGCQPCKPKLIIVHPNKPQDYYPQKWVCSCHNKIYN 513
>sp|P86885|ADH1_MESAU Alcohol dehydrogenase 1 OS=Mesocricetus auratus GN=ADH1 PE=1 SV=1
Length = 374
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 30/71 (42%), Gaps = 11/71 (15%)
Query: 34 HYISVSVDENGASRFDDHAAH---VNPEP-NKGRE----TEEVGTGVY---PTGSSIPDC 82
H + + + G R DDHAA V P P G E E VG GV P IP
Sbjct: 34 HEVRIKMVATGICRTDDHAATGNFVTPLPIVLGHEGAGIVESVGEGVTSVKPGDKVIPLF 93
Query: 83 SHACGPCFPCK 93
S CG C CK
Sbjct: 94 SPQCGKCRVCK 104
>sp|Q9LUH9|EPFL5_ARATH EPIDERMAL PATTERNING FACTOR-like protein 5 OS=Arabidopsis thaliana
GN=EPFL5 PE=3 SV=1
Length = 107
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 76 GSSIPDCSHACGPCFPCKRVMVSFKCSV---AESCPIVYRCMCRGKYY 120
GS P C CG C PCK V V + + E P +RC C K +
Sbjct: 58 GSVPPMCRLKCGKCEPCKAVHVPIQPGLIMPLEYYPEAWRCKCGNKLF 105
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1
Length = 507
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 77 SSIPDCSHACGPCFPCK-RVMVSFKCSVAESCPIVYRCMCRGKYYH 121
SS P+C + C C PCK ++++ + P + C C K Y+
Sbjct: 461 SSPPNCKNKCKGCQPCKPKLIIVHPNQPEDYYPQRWVCSCHNKIYN 506
>sp|B4S459|ACCD_PROA2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta
OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413)
GN=accD PE=3 SV=1
Length = 279
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 25 GYSLRMSSHHYISVSVDENGASRFDDHAAHVNP 57
GY R+S + Y S+ DE FDD+ +P
Sbjct: 50 GYHFRLSPYQYFSLLFDEKKYDEFDDNLRAADP 82
>sp|Q8BFW9|GTR12_MOUSE Solute carrier family 2, facilitated glucose transporter member 12
OS=Mus musculus GN=Slc2a12 PE=2 SV=1
Length = 622
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 11 ARICFLILFMFFSTGYSLRMSSHHYISVSVDENGASRFDDHAAHVNPEPNKGRETEEVGT 70
A + F++LF+ + G SL S + +N H + P + R+ +E
Sbjct: 545 ASLAFVVLFIPETKGCSLEQISVELAKANYVKNNICFMSHHQEELVPTQLQKRKPQE--- 601
Query: 71 GVYPTGSSIPDCSHACG 87
+P+C+H CG
Sbjct: 602 -------QLPECNHLCG 611
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.137 0.452
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,462,630
Number of Sequences: 539616
Number of extensions: 1933304
Number of successful extensions: 5078
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 5068
Number of HSP's gapped (non-prelim): 22
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)