Query 033170
Match_columns 125
No_of_seqs 103 out of 121
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 17:34:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033170.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033170hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2liy_A Epidermal patterning fa 96.9 0.00074 2.5E-08 42.7 3.1 39 75-116 1-44 (45)
2 2l3i_A Aoxki4A, antimicrobial 66.0 1.3 4.5E-05 25.6 0.1 8 107-114 4-11 (30)
3 2jr7_A DPH3 homolog; DESR1, CS 15.6 41 0.0014 23.2 0.6 11 109-119 22-32 (89)
4 1x4w_A Hypothetical protein FL 15.1 30 0.001 22.9 -0.3 10 110-119 32-41 (67)
5 2gjv_A Putative cytoplasmic pr 14.7 46 0.0016 25.7 0.7 16 71-86 112-127 (175)
6 1wge_A Hypothetical protein 26 14.4 43 0.0015 22.7 0.4 11 109-119 29-39 (83)
7 1yop_A KTI11P; zinc finger, me 13.6 46 0.0016 22.6 0.3 11 109-119 22-32 (83)
8 1m93_A Serine proteinase inhib 13.5 1.1E+02 0.0036 18.5 2.0 18 2-19 14-31 (55)
9 1dwl_A Ferredoxin I; electron 13.5 64 0.0022 17.7 0.9 11 84-94 7-17 (59)
10 2fdn_A Ferredoxin; electron tr 13.2 83 0.0028 17.4 1.3 11 84-94 6-16 (55)
No 1
>2liy_A Epidermal patterning factor-like protein 9; plant peptide hormone, EPFL family, stomatal density, positi regulator, hormone; NMR {Arabidopsis thaliana}
Probab=96.87 E-value=0.00074 Score=42.70 Aligned_cols=39 Identities=31% Similarity=0.809 Sum_probs=32.2
Q ss_pred CCCCCCccc-CCCCCCc-cCcceEecccCC---CCccccceeeeecC
Q 033170 75 TGSSIPDCS-HACGPCF-PCKRVMVSFKCS---VAESCPIVYRCMCR 116 (125)
Q Consensus 75 iGS~PP~C~-~KC~~C~-PC~aV~Vp~~~s---~~eY~P~~WkCkCg 116 (125)
|||+.|.|. |-|.+|. -|.+-|||+.-. .+-| -|||.|+
T Consensus 1 igS~APtCTYNECrgCr~~C~aeqvPvd~~dP~~SAY---hY~CvCh 44 (45)
T 2liy_A 1 IGSTAPTCTYNECRGCRYKCRAEQVPVEGNDPINSAY---HYRCVCH 44 (45)
T ss_dssp CCSCTTTTCGGGGTTCCSEEEEEEEESSCSSSCSCCE---EEEEEEE
T ss_pred CCccCCceeehhhcCcccccceeeccccCCCcccchh---eeEeEec
Confidence 799999997 5899997 499999999874 3444 5899986
No 2
>2l3i_A Aoxki4A, antimicrobial peptide in spider venom; antimicrobial protein; NMR {Araneae}
Probab=66.04 E-value=1.3 Score=25.56 Aligned_cols=8 Identities=38% Similarity=1.368 Sum_probs=7.2
Q ss_pred ccceeeee
Q 033170 107 CPIVYRCM 114 (125)
Q Consensus 107 ~P~~WkCk 114 (125)
+|-+|||+
T Consensus 4 cpkswkck 11 (30)
T 2l3i_A 4 CPKSWKCK 11 (30)
T ss_dssp SSSCSCCC
T ss_pred CCcchhHH
Confidence 79999997
No 3
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=15.64 E-value=41 Score=23.17 Aligned_cols=11 Identities=27% Similarity=0.966 Sum_probs=8.6
Q ss_pred ceeeeecCCcc
Q 033170 109 IVYRCMCRGKY 119 (125)
Q Consensus 109 ~~WkCkCg~k~ 119 (125)
..|-|+|||.|
T Consensus 22 y~ypCrCGd~F 32 (89)
T 2jr7_A 22 YFYPCPCGDNF 32 (89)
T ss_dssp EEEECTTSSEE
T ss_pred EEEcCCCCCEE
Confidence 45789999984
No 4
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=15.12 E-value=30 Score=22.92 Aligned_cols=10 Identities=20% Similarity=0.577 Sum_probs=7.8
Q ss_pred eeeeecCCcc
Q 033170 110 VYRCMCRGKY 119 (125)
Q Consensus 110 ~WkCkCg~k~ 119 (125)
+++|+||+.|
T Consensus 32 gf~CrCg~~F 41 (67)
T 1x4w_A 32 LGSCRCGYVF 41 (67)
T ss_dssp HHCCSSSCCC
T ss_pred ceEecCCCEe
Confidence 4889998865
No 5
>2gjv_A Putative cytoplasmic protein; structural genomics, unknown function, PSI, protein structur initiative; 2.39A {Salmonella typhimurium} SCOP: d.323.1.2
Probab=14.75 E-value=46 Score=25.74 Aligned_cols=16 Identities=25% Similarity=0.484 Sum_probs=13.0
Q ss_pred cccCCCCCCCcccCCC
Q 033170 71 GVYPTGSSIPDCSHAC 86 (125)
Q Consensus 71 ~~~~iGS~PP~C~~KC 86 (125)
.+...|=+||+|..+|
T Consensus 112 RlaL~Gf~ppdC~r~~ 127 (175)
T 2gjv_A 112 RRSLGGIELPDCDRPL 127 (175)
T ss_dssp HHHHTTCCCTTCSSCC
T ss_pred HHHHcCccCCCCCCcc
Confidence 4567899999998766
No 6
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=14.41 E-value=43 Score=22.70 Aligned_cols=11 Identities=27% Similarity=0.966 Sum_probs=8.4
Q ss_pred ceeeeecCCcc
Q 033170 109 IVYRCMCRGKY 119 (125)
Q Consensus 109 ~~WkCkCg~k~ 119 (125)
..|-|+||++|
T Consensus 29 y~y~CrCGd~F 39 (83)
T 1wge_A 29 YFYPCPCGDNF 39 (83)
T ss_dssp EEECCSSSSCE
T ss_pred EEEeCCCCCEE
Confidence 35779999984
No 7
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=13.59 E-value=46 Score=22.58 Aligned_cols=11 Identities=27% Similarity=1.071 Sum_probs=8.3
Q ss_pred ceeeeecCCcc
Q 033170 109 IVYRCMCRGKY 119 (125)
Q Consensus 109 ~~WkCkCg~k~ 119 (125)
..|-|+||+.|
T Consensus 22 y~ypCrCGd~F 32 (83)
T 1yop_A 22 FTYPCPCGDRF 32 (83)
T ss_dssp EEEEETTTEEE
T ss_pred EEEeCCCCCeE
Confidence 45789999765
No 8
>1m93_A Serine proteinase inhibitor 2; serpin, CRMA, apoptosis, ICE inhibitor, viral protein; 1.65A {Cowpox virus} SCOP: e.1.1.1
Probab=13.52 E-value=1.1e+02 Score=18.46 Aligned_cols=18 Identities=28% Similarity=0.484 Sum_probs=11.8
Q ss_pred CCcccchhhHHHHHHHHH
Q 033170 2 RNSIFSPARARICFLILF 19 (125)
Q Consensus 2 ~~~~~~~~~~~~~l~~~f 19 (125)
.|-+|||..-...|.+++
T Consensus 14 ~Ni~~SP~Si~~aLaml~ 31 (55)
T 1m93_A 14 ENVFISPPSISSVLTILY 31 (55)
T ss_dssp SCEEECHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHHHH
Confidence 477899977555554444
No 9
>1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1
Probab=13.48 E-value=64 Score=17.68 Aligned_cols=11 Identities=27% Similarity=0.727 Sum_probs=7.6
Q ss_pred CCCCCCccCcc
Q 033170 84 HACGPCFPCKR 94 (125)
Q Consensus 84 ~KC~~C~PC~a 94 (125)
.+|.+|+-|..
T Consensus 7 ~~C~~C~~C~~ 17 (59)
T 1dwl_A 7 EECIGCESCVE 17 (59)
T ss_dssp CCCSSCCGGGG
T ss_pred hhCcChhHHHH
Confidence 46777777754
No 10
>2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A
Probab=13.22 E-value=83 Score=17.43 Aligned_cols=11 Identities=36% Similarity=0.866 Sum_probs=8.2
Q ss_pred CCCCCCccCcc
Q 033170 84 HACGPCFPCKR 94 (125)
Q Consensus 84 ~KC~~C~PC~a 94 (125)
.+|.+|+-|..
T Consensus 6 ~~C~~C~~C~~ 16 (55)
T 2fdn_A 6 EACISCGACEP 16 (55)
T ss_dssp TTCCCCCTTGG
T ss_pred ccCcChhhHHH
Confidence 57888888865
Done!