Query 033170
Match_columns 125
No_of_seqs 103 out of 121
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 17:34:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033170.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033170hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fug11 a.29.12.1 (1:334-438) 30.6 3.8 0.00028 26.8 -0.6 9 85-93 19-27 (105)
2 d2j0141 d.325.1.2 (4:1-50) Rib 20.1 9.4 0.00069 22.4 -0.2 16 104-119 7-22 (50)
3 d2axtk1 f.23.36.1 (K:10-46) Ph 20.0 25 0.0018 19.7 1.7 23 4-26 7-30 (37)
4 d1wffa_ g.80.1.1 (A:) ANUBL1 ( 17.1 18 0.0013 23.4 0.6 10 110-119 40-49 (85)
5 d2gjva1 d.323.1.2 (A:1-134) Pu 16.2 19 0.0014 25.1 0.7 17 71-87 88-104 (134)
6 d1qypa_ g.41.3.1 (A:) RBP9 sub 16.0 79 0.0057 18.3 3.5 41 79-119 11-53 (57)
7 d1wfla_ g.80.1.1 (A:) Zinc fin 15.3 21 0.0015 22.5 0.6 10 110-119 39-48 (74)
8 d1wfha_ g.80.1.1 (A:) Zinc fin 14.2 24 0.0017 21.7 0.7 10 110-119 29-38 (64)
9 d1a7ia1 g.39.1.3 (A:8-35) Cyst 13.6 28 0.002 18.4 0.7 7 84-90 1-7 (28)
10 d1dfxa2 g.41.5.2 (A:1-36) Desu 13.3 29 0.0021 19.3 0.8 10 109-118 5-15 (36)
No 1
>d2fug11 a.29.12.1 (1:334-438) NADH-quinone oxidoreductase chain 1, Nqo1 {Thermus thermophilus [TaxId: 274]}
Probab=30.56 E-value=3.8 Score=26.84 Aligned_cols=9 Identities=56% Similarity=1.837 Sum_probs=7.8
Q ss_pred CCCCCccCc
Q 033170 85 ACGPCFPCK 93 (125)
Q Consensus 85 KC~~C~PC~ 93 (125)
-||.|.||.
T Consensus 19 SCGkC~PCR 27 (105)
T d2fug11 19 SCGKCTPCR 27 (105)
T ss_dssp CCSCCHHHH
T ss_pred cCCCCCcch
Confidence 599999995
No 2
>d2j0141 d.325.1.2 (4:1-50) Ribosomal protein L31p {Thermus thermophilus [TaxId: 274]}
Probab=20.12 E-value=9.4 Score=22.35 Aligned_cols=16 Identities=19% Similarity=0.368 Sum_probs=13.7
Q ss_pred CccccceeeeecCCcc
Q 033170 104 AESCPIVYRCMCRGKY 119 (125)
Q Consensus 104 ~eY~P~~WkCkCg~k~ 119 (125)
-+|++..-+|.||+.+
T Consensus 7 P~y~~v~~~cscg~~f 22 (50)
T d2j0141 7 PKLVPARIICGCGNVI 22 (50)
T ss_dssp CCCTTTTTCTTSCGGG
T ss_pred CCCEEEEEEECCCCEE
Confidence 5799999999999864
No 3
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.01 E-value=25 Score=19.71 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=14.7
Q ss_pred cccchhhHHHH-HHHHHHHHHhhc
Q 033170 4 SIFSPARARIC-FLILFMFFSTGY 26 (125)
Q Consensus 4 ~~~~~~~~~~~-l~~~f~~~~~~~ 26 (125)
.+|.|.---++ ++++|++++.++
T Consensus 7 ~~f~PivdvlPiIPv~f~lLafVW 30 (37)
T d2axtk1 7 AIFDPLVDVLPVIPVLFLALAFVW 30 (37)
T ss_dssp GGCHHHHHHGGGHHHHHHHHHHHH
T ss_pred hhhchHHHHhccHHHHHHHHHHHH
Confidence 45666543344 778888877765
No 4
>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.13 E-value=18 Score=23.35 Aligned_cols=10 Identities=20% Similarity=1.036 Sum_probs=7.8
Q ss_pred eeeeecCCcc
Q 033170 110 VYRCMCRGKY 119 (125)
Q Consensus 110 ~WkCkCg~k~ 119 (125)
.++|+||+.|
T Consensus 40 ~~~CrCg~~F 49 (85)
T d1wffa_ 40 SFECRCGNNF 49 (85)
T ss_dssp CEECTTCCEE
T ss_pred CeecCCCCEe
Confidence 4699999854
No 5
>d2gjva1 d.323.1.2 (A:1-134) Putative cytoplasmic protein STM4215 {Salmonella typhimurium [TaxId: 90371]}
Probab=16.16 E-value=19 Score=25.06 Aligned_cols=17 Identities=24% Similarity=0.378 Sum_probs=13.5
Q ss_pred cccCCCCCCCcccCCCC
Q 033170 71 GVYPTGSSIPDCSHACG 87 (125)
Q Consensus 71 ~~~~iGS~PP~C~~KC~ 87 (125)
.+...|=+||+|..||.
T Consensus 88 R~aL~Gf~ppdC~~~l~ 104 (134)
T d2gjva1 88 RRSLGGIELPDCDRPLW 104 (134)
T ss_dssp HHHHTTCCCTTCSSCCE
T ss_pred HHHHcCccCCCCCccch
Confidence 45678999999987763
No 6
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]}
Probab=15.97 E-value=79 Score=18.35 Aligned_cols=41 Identities=20% Similarity=0.466 Sum_probs=28.4
Q ss_pred CCcccCCCCCCccCcceEecccC-CCCccccceeee-ecCCcc
Q 033170 79 IPDCSHACGPCFPCKRVMVSFKC-SVAESCPIVYRC-MCRGKY 119 (125)
Q Consensus 79 PP~C~~KC~~C~PC~aV~Vp~~~-s~~eY~P~~WkC-kCg~k~ 119 (125)
.|.=..+|..|+.=+++-+-.+. +.+|--=+-+.| .||.+.
T Consensus 11 ~pt~~~~CpkC~~~~a~~~~~QtRsaDE~~T~fy~C~~Cg~~w 53 (57)
T d1qypa_ 11 LPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTW 53 (57)
T ss_dssp SCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEE
T ss_pred CCcccCCCCCCCCCceEEEEeecccccCCCeEEEEeCCCCCcc
Confidence 34556789999998998877665 455655566777 577653
No 7
>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.32 E-value=21 Score=22.53 Aligned_cols=10 Identities=20% Similarity=0.840 Sum_probs=8.0
Q ss_pred eeeeecCCcc
Q 033170 110 VYRCMCRGKY 119 (125)
Q Consensus 110 ~WkCkCg~k~ 119 (125)
.++|+||+.|
T Consensus 39 ~~~CrCg~~F 48 (74)
T d1wfla_ 39 GFDCRCGNLF 48 (74)
T ss_dssp CEECTTSCEE
T ss_pred eeEccCCCEe
Confidence 4689999875
No 8
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=14.23 E-value=24 Score=21.67 Aligned_cols=10 Identities=20% Similarity=0.816 Sum_probs=7.7
Q ss_pred eeeeecCCcc
Q 033170 110 VYRCMCRGKY 119 (125)
Q Consensus 110 ~WkCkCg~k~ 119 (125)
.++|+||+.|
T Consensus 29 ~~~CrCg~~F 38 (64)
T d1wfha_ 29 GFMCRCGTTF 38 (64)
T ss_dssp CEECSSSCEE
T ss_pred eeeccCCCEe
Confidence 4589999865
No 9
>d1a7ia1 g.39.1.3 (A:8-35) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=13.55 E-value=28 Score=18.41 Aligned_cols=7 Identities=43% Similarity=1.213 Sum_probs=4.3
Q ss_pred CCCCCCc
Q 033170 84 HACGPCF 90 (125)
Q Consensus 84 ~KC~~C~ 90 (125)
||||.|.
T Consensus 1 nkcg~c~ 7 (28)
T d1a7ia1 1 NKCGACG 7 (28)
T ss_dssp CBCSSSC
T ss_pred Ccccccc
Confidence 5666664
No 10
>d1dfxa2 g.41.5.2 (A:1-36) Desulfoferrodoxin N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}
Probab=13.33 E-value=29 Score=19.29 Aligned_cols=10 Identities=40% Similarity=1.006 Sum_probs=6.6
Q ss_pred ceeee-ecCCc
Q 033170 109 IVYRC-MCRGK 118 (125)
Q Consensus 109 ~~WkC-kCg~k 118 (125)
+.||| .|||-
T Consensus 5 evYkC~~CGNi 15 (36)
T d1dfxa2 5 EVYKCTHCGNI 15 (36)
T ss_dssp CEEECTTTCCE
T ss_pred cEEEecccCcE
Confidence 56888 47763
Done!