BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033171
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GY7|A Chain A, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|B Chain B, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|C Chain C, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GY7|D Chain D, N77y Point Mutant Of S.Cerevisiae Ntf2
pdb|1GYB|A Chain A, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|B Chain B, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|C Chain C, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
pdb|1GYB|D Chain D, N77y Point Mutant Of Yntf2 Bound To Fxfg Nucleoporin
Repeat
Length = 125
Score = 104 bits (260), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 73/118 (61%), Gaps = 1/118 (0%)
Query: 8 VGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMIS 67
+ + F YY+ FD DR+ L +LY+ SMLTFE + G DI K LPF + +H I+
Sbjct: 8 LAQNFTQFYYNQFDTDRSQLGNLYRNESMLTFETSQLQGAKDIVEKLVSLPFQKVQHRIT 67
Query: 68 TIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRLNYG 125
T+D+QP G +L+ ++G L + E + RFSQ+FHLIP S+ V NDIFRLNY
Sbjct: 68 TLDAQPASPYGDVLVMITGDLLIDEEQNPQRFSQVFHLIPDG-NSYYVFNDIFRLNYS 124
>pdb|1ZO2|A Chain A, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
pdb|1ZO2|B Chain B, Structure Of Nuclear Transport Factor 2 (Ntf2) From
Cryptosporidium Parvum
Length = 129
Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 79/125 (63%), Gaps = 2/125 (1%)
Query: 1 MEDQTELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFD 60
+ Q + +GK FV HYY F +R +L LY P SMLT+E +F G +I KFN L F
Sbjct: 7 LNPQFDQIGKQFVQHYYQTFQTNRPALGGLYGPQSMLTWEDTQFQGQANIVNKFNSLNFQ 66
Query: 61 QCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIF 120
+ + I+ +D QP P+ G ++FV+G +++ + L+FSQ+F+L+P+ G F + ND+F
Sbjct: 67 RVQFEITRVDCQPSPNNGS-IVFVTGDVRID-DGQPLKFSQVFNLMPSGNGGFMIFNDLF 124
Query: 121 RLNYG 125
RLN G
Sbjct: 125 RLNLG 129
>pdb|1OUN|A Chain A, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1OUN|B Chain B, Crystal Structure Of Nuclear Transport Factor 2 (Ntf2)
pdb|1A2K|A Chain A, Gdpran-Ntf2 Complex
pdb|1A2K|B Chain B, Gdpran-Ntf2 Complex
pdb|1GY6|A Chain A, Ntf2 From Rat, Ammonium Sulphate Conditions
pdb|1GY6|B Chain B, Ntf2 From Rat, Ammonium Sulphate Conditions
Length = 127
Score = 88.6 bits (218), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 6 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHM 65
E +G +F+ HYY LFDNDR L ++Y S LT+EGQ+F G I K + LPF + +H
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 66 ISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRL--- 122
I+ D QP P + ++ V G L+ A ED + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPTPDS-CIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRLALH 124
Query: 123 NYG 125
N+G
Sbjct: 125 NFG 127
>pdb|1QMA|A Chain A, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|B Chain B, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|C Chain C, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
pdb|1QMA|D Chain D, Nuclear Transport Factor 2 (Ntf2) W7a Mutant
Length = 126
Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 6/124 (4%)
Query: 5 TELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRH 64
E +G +F+ HYY LFDNDR L ++Y S LT+EGQ+F G I K + LPF + +H
Sbjct: 6 AEQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQH 65
Query: 65 MISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRL-- 122
I+ D QP P + ++ V G L+ A ED + F QMF L+ ++ ND+FRL
Sbjct: 66 SITAQDHQPTPDS-CIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRLAL 122
Query: 123 -NYG 125
N+G
Sbjct: 123 HNFG 126
>pdb|1JB2|A Chain A, Crystal Structure Of Ntf2 M84e Mutant
pdb|1JB2|B Chain B, Crystal Structure Of Ntf2 M84e Mutant
Length = 127
Score = 88.2 bits (217), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 6 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHM 65
E +G +F+ HYY LFDNDR L ++Y S LT+EGQ+F G I K + LPF + +H
Sbjct: 8 EQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 66 ISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRL--- 122
I+ D QP P + ++ V G L+ A ED + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPTPDS-CIISEVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRLALH 124
Query: 123 NYG 125
N+G
Sbjct: 125 NFG 127
>pdb|1JB5|A Chain A, Crystal Structure Of Ntf2 M118e Mutant
pdb|1JB5|B Chain B, Crystal Structure Of Ntf2 M118e Mutant
Length = 127
Score = 87.8 bits (216), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 6 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHM 65
E +G +F+ HYY LFDNDR L ++Y S LT+EGQ+F G I K + LPF + +H
Sbjct: 8 EQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 66 ISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRL--- 122
I+ D QP P + ++ V G L+ A ED + F QMF L+ ++ ND FRL
Sbjct: 68 ITAQDHQPTPDS-CIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDEFRLALH 124
Query: 123 NYG 125
N+G
Sbjct: 125 NFG 127
>pdb|1GY5|A Chain A, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
pdb|1GY5|B Chain B, D92n,D94n Double Point Mutant Of Human Nuclear Transport
Factor 2 (Ntf2)
Length = 127
Score = 87.4 bits (215), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 6 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHM 65
E +G +F+ HYY LFDNDR L ++Y S LT+EGQ+F G I K + LPF + +H
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 66 ISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRL--- 122
I+ D QP P + ++ V G L+ A E+ + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPTPDS-CIISMVVGQLK-ANENPIMGFHQMF-LLKNINDAWVCTNDMFRLALH 124
Query: 123 NYG 125
N+G
Sbjct: 125 NFG 127
>pdb|1AR0|A Chain A, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
pdb|1AR0|B Chain B, Nuclear Transport Factor 2 (Ntf2) E42k Mutant
Length = 127
Score = 87.0 bits (214), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 6/123 (4%)
Query: 6 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHM 65
E +G +F+ HYY LFDNDR L ++Y S LT++GQ+F G I K + LPF + +H
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWKGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 66 ISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRL--- 122
I+ D QP P + ++ V G L+ A ED + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPTPDS-CIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRLALH 124
Query: 123 NYG 125
N+G
Sbjct: 125 NFG 127
>pdb|1JB4|A Chain A, Crystal Structure Of Ntf2 M102e Mutant
pdb|1JB4|B Chain B, Crystal Structure Of Ntf2 M102e Mutant
Length = 127
Score = 86.7 bits (213), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 6 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHM 65
E +G +F+ HYY LFDNDR L ++Y S LT+EGQ+F G I K + LPF + +H
Sbjct: 8 EQIGSSFINHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 66 ISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRL--- 122
I+ D QP P + ++ V G L+ A ED + F Q F L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPTPDS-CIISMVVGQLK-ADEDPIMGFHQEF-LLKNINDAWVCTNDMFRLALH 124
Query: 123 NYG 125
N+G
Sbjct: 125 NFG 127
>pdb|1U5O|A Chain A, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
pdb|1U5O|B Chain B, Structure Of The D23a Mutant Of The Nuclear Transport
Carrier Ntf2
Length = 127
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 6 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHM 65
E +G +F+ HYY LF NDR L ++Y S LT+EGQ+F G I K + LPF + +H
Sbjct: 8 EQIGSSFIQHYYQLFANDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQHS 67
Query: 66 ISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRL--- 122
I+ D QP P + ++ V G L+ A ED + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPTPDS-CIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRLALH 124
Query: 123 NYG 125
N+G
Sbjct: 125 NFG 127
>pdb|1ASK|A Chain A, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
pdb|1ASK|B Chain B, Nuclear Transport Factor 2 (Ntf2) H66a Mutant
Length = 127
Score = 85.5 bits (210), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 6/123 (4%)
Query: 6 ELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHM 65
E +G +F+ HYY LFDNDR L ++Y S LT+EGQ+F G I K + LPF + +
Sbjct: 8 EQIGSSFIQHYYQLFDNDRTQLGAIYIDASCLTWEGQQFQGKAAIVEKLSSLPFQKIQAS 67
Query: 66 ISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFRL--- 122
I+ D QP P + ++ V G L+ A ED + F QMF L+ ++ ND+FRL
Sbjct: 68 ITAQDHQPTPDS-CIISMVVGQLK-ADEDPIMGFHQMF-LLKNINDAWVCTNDMFRLALH 124
Query: 123 NYG 125
N+G
Sbjct: 125 NFG 127
>pdb|3UJM|A Chain A, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
pdb|3UJM|B Chain B, Crystal Structure Of The Ntf2-Like Domain Of The
Drosophila Melanogaster Rasputin Protein
Length = 120
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
Query: 8 VGKTFVGHYYHLFDNDRASLSSLY-QPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMI 66
VG+ FV YY L + L Y +S + E + G +I + QL F+ C I
Sbjct: 6 VGREFVRQYYTLLNKAPNHLHRFYNHNSSYIHGESKLVVGQREIHNRIQQLNFNDCHAKI 65
Query: 67 STIDSQPCPSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFR 121
S +D+Q G +++ V+G L G+ RF+Q F L + V NDIFR
Sbjct: 66 SQVDAQATLGNG-VVVQVTGELSNDGQPMR-RFTQTFVLAAQSPKKYYVHNDIFR 118
>pdb|1JKG|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Nuclear
Export Factor
pdb|1JN5|A Chain A, Structural Basis For The Recognition Of A Nucleoporin Fg-
Repeat By The Ntf2-Like Domain Of Tap-P15 Mrna Export
Factor
Length = 140
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 3 DQTELVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQC 62
DQ + FV YY D R LS LY T+ L + G G + +S F LP +
Sbjct: 11 DQACRAAEEFVNVYYTTMDKRRRLLSRLYMGTATLVWNGNAVSGQESLSEFFEMLPSSE- 69
Query: 63 RHMISTIDSQPC-----PSTGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGS---FA 114
IS +D QP PS +L+ + GS++ G + F+Q F L S +
Sbjct: 70 -FQISVVDCQPVHDEATPSQTTVLVVICGSVKFEG-NKQRDFNQNFILTAQASPSNTVWK 127
Query: 115 VQNDIFR 121
+ +D FR
Sbjct: 128 IASDCFR 134
>pdb|3NV0|B Chain B, Crystal Structure And Mutational Analysis Of The Nxf2NXT1
Heterodimeric Complex From Caenorhabditis Elegans At
1.84 A Resolution
Length = 154
Score = 52.4 bits (124), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 10/118 (8%)
Query: 10 KTFVGHYYHLFDNDRASLSSLYQPTSMLTFEGQKFFGVDDISTKFNQLPFDQCRHMISTI 69
K F+ YY + D R + LY S + G G D I LP Q H I ++
Sbjct: 38 KKFMDVYYDVMDRKREKIGFLYTQVSNAVWNGNPINGYDSICEFMKALPSTQ--HDIQSL 95
Query: 70 DSQPCPS------TGGLLIFVSGSLQLAGEDHHLRFSQMFHLIPTPRGSFAVQNDIFR 121
D+Q P +GG+L+ V+G++ + G D F+Q L+ G + V++D FR
Sbjct: 96 DAQRLPEGVTGDMSGGMLLNVAGAVTVDG-DSKRAFTQTL-LLGVEDGKYKVKSDRFR 151
>pdb|3Q90|A Chain A, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
pdb|3Q90|B Chain B, Crystal Structure Of The Ntf2 Domain Of Ras
Gtpase-Activating Protein- Binding Protein 1
Length = 140
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 50/126 (39%), Gaps = 14/126 (11%)
Query: 7 LVGKTFVGHYYHLFDNDRASLSSLYQPTSMLTFEG--------QKFFGVDDISTKFNQLP 58
LVG+ FV YY L + L Y S G +G +I K
Sbjct: 11 LVGREFVRQYYTLLNQAPDMLHRFYGKNSSYVHGGLDSNGKPADAVYGQKEIHRKVMSQN 70
Query: 59 FDQCRHMISTIDSQPCPSTGGLLIFVSGSLQLAGEDHHL-RFSQMFHLIP--TPRGSFAV 115
F C I +D+ + G+++ V G L+ + L RF Q F L P + F V
Sbjct: 71 FTNCHTKIRHVDAHATLND-GVVVQVMG--LLSNNNQALRRFMQTFVLAPEGSVANKFYV 127
Query: 116 QNDIFR 121
NDIFR
Sbjct: 128 HNDIFR 133
>pdb|3HPE|A Chain A, Crystal Structure Of Ycei (Hp1286) From Helicobacter
Pylori
pdb|3HPE|B Chain B, Crystal Structure Of Ycei (Hp1286) From Helicobacter
Pylori
Length = 164
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 10/66 (15%)
Query: 59 FDQCRHMISTIDSQ--PCPSTGGLLIFVSGSLQLAG-------EDHHLRFSQMFHLIPTP 109
F++ R + + D + P+T L +F G + + D HL+ ++ F ++ P
Sbjct: 21 FNETRGVFDSFDGKIDADPNTKALNVF-EGKIDIKSINTRNKKRDDHLKTAEFFDVVKYP 79
Query: 110 RGSFAV 115
+GSF +
Sbjct: 80 KGSFKM 85
>pdb|1OF5|A Chain A, Crystal Structure Of Mex67-mtr2
Length = 221
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 12 FVGHYYHLFDNDRASLSSLYQPTSMLT 38
F ++ +L+DN+R L +LY P S +
Sbjct: 17 FATNFLNLWDNNREQLLNLYSPQSQFS 43
>pdb|1LYA|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYA|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYW|B Chain B, Cathepsin D At Ph 7.5
pdb|1LYW|D Chain D, Cathepsin D At Ph 7.5
pdb|1LYW|F Chain F, Cathepsin D At Ph 7.5
pdb|1LYW|H Chain H, Cathepsin D At Ph 7.5
pdb|1LYB|B Chain B, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
pdb|1LYB|D Chain D, Crystal Structures Of Native And Inhibited Forms Of Human
Cathepsin D: Implications For Lysosomal Targeting And
Drug Design
Length = 241
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 7 LVGKTFVGHYYHLFDND 23
++G F+G YY +FD D
Sbjct: 215 ILGDVFIGRYYTVFDRD 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,869,661
Number of Sequences: 62578
Number of extensions: 142815
Number of successful extensions: 407
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 387
Number of HSP's gapped (non-prelim): 24
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 45 (21.9 bits)