Query 033172
Match_columns 125
No_of_seqs 101 out of 1024
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 10:42:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033172.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033172hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01814 NTGP5 Ubiquitin-like N 100.0 2E-33 4.2E-38 199.5 9.1 109 4-112 2-113 (113)
2 PF13881 Rad60-SLD_2: Ubiquiti 100.0 3.9E-32 8.4E-37 193.0 12.2 109 5-113 1-111 (111)
3 cd01807 GDX_N ubiquitin-like d 99.8 5.8E-18 1.3E-22 110.9 8.2 73 8-94 2-74 (74)
4 cd01790 Herp_N Homocysteine-re 99.7 5.5E-18 1.2E-22 114.0 7.2 74 7-91 2-78 (79)
5 cd01794 DC_UbP_C dendritic cel 99.7 1.1E-17 2.4E-22 109.5 6.9 68 9-92 1-70 (70)
6 cd01793 Fubi Fubi ubiquitin-li 99.7 3E-17 6.5E-22 107.6 7.6 73 8-96 2-74 (74)
7 cd01797 NIRF_N amino-terminal 99.7 3.8E-17 8.2E-22 109.0 8.0 73 8-95 2-77 (78)
8 cd01802 AN1_N ubiquitin-like d 99.7 6.9E-17 1.5E-21 113.1 8.6 76 5-96 26-103 (103)
9 cd01810 ISG15_repeat2 ISG15 ub 99.7 9.6E-17 2.1E-21 105.2 7.3 73 9-95 1-73 (74)
10 cd01798 parkin_N amino-termina 99.7 1E-16 2.2E-21 103.8 7.2 68 9-92 1-70 (70)
11 PTZ00044 ubiquitin; Provisiona 99.7 1.7E-16 3.7E-21 103.7 8.3 72 8-95 2-75 (76)
12 cd01791 Ubl5 UBL5 ubiquitin-li 99.7 1.5E-16 3.2E-21 105.2 7.9 69 7-91 2-72 (73)
13 cd01806 Nedd8 Nebb8-like ubiq 99.7 4.1E-16 8.9E-21 101.1 8.3 72 8-95 2-75 (76)
14 cd01804 midnolin_N Ubiquitin-l 99.7 6.5E-16 1.4E-20 102.7 8.4 73 7-96 2-76 (78)
15 PF00240 ubiquitin: Ubiquitin 99.6 9.9E-16 2.1E-20 98.1 8.3 66 12-93 1-68 (69)
16 cd01808 hPLIC_N Ubiquitin-like 99.6 7.2E-16 1.6E-20 100.2 7.6 71 7-92 1-71 (71)
17 cd01803 Ubiquitin Ubiquitin. U 99.6 1.1E-15 2.3E-20 99.2 8.2 73 8-96 2-76 (76)
18 cd01800 SF3a120_C Ubiquitin-li 99.6 7.8E-16 1.7E-20 101.5 7.2 71 15-99 6-76 (76)
19 cd01809 Scythe_N Ubiquitin-lik 99.6 1.9E-15 4.1E-20 97.1 7.8 72 7-92 1-72 (72)
20 cd01805 RAD23_N Ubiquitin-like 99.6 2.3E-15 5E-20 98.4 8.1 74 8-93 2-75 (77)
21 cd01792 ISG15_repeat1 ISG15 ub 99.6 2.3E-15 5E-20 100.2 7.6 72 7-94 3-78 (80)
22 cd01796 DDI1_N DNA damage indu 99.6 4.3E-15 9.3E-20 97.0 6.5 67 9-89 1-69 (71)
23 cd01815 BMSC_UbP_N Ubiquitin-l 99.5 1E-14 2.2E-19 97.3 4.9 58 25-92 18-75 (75)
24 KOG0005 Ubiquitin-like protein 99.5 1.2E-14 2.7E-19 93.4 4.2 69 8-90 2-70 (70)
25 cd01812 BAG1_N Ubiquitin-like 99.5 5.5E-14 1.2E-18 90.3 7.2 67 7-90 1-69 (71)
26 KOG0010 Ubiquitin-like protein 99.5 4.6E-14 9.9E-19 120.5 7.4 76 6-96 15-90 (493)
27 cd01763 Sumo Small ubiquitin-r 99.5 4.1E-13 8.9E-18 90.9 9.5 77 4-96 9-87 (87)
28 KOG0004 Ubiquitin/40S ribosoma 99.4 1.7E-13 3.8E-18 102.1 4.3 77 11-101 5-81 (156)
29 TIGR00601 rad23 UV excision re 99.4 1.1E-12 2.3E-17 109.9 9.2 67 8-79 2-68 (378)
30 cd01813 UBP_N UBP ubiquitin pr 99.4 7.9E-13 1.7E-17 87.3 6.4 60 15-90 8-72 (74)
31 smart00213 UBQ Ubiquitin homol 99.4 2.4E-12 5.2E-17 80.1 6.5 61 7-78 1-63 (64)
32 KOG0003 Ubiquitin/60s ribosoma 99.3 1.2E-13 2.6E-18 98.0 0.0 73 11-97 5-77 (128)
33 cd01799 Hoil1_N Ubiquitin-like 99.3 1.6E-11 3.6E-16 81.4 7.2 69 7-90 3-73 (75)
34 cd01769 UBL Ubiquitin-like dom 99.2 5.9E-11 1.3E-15 74.6 7.0 67 11-91 2-68 (69)
35 KOG0011 Nucleotide excision re 99.2 4.1E-11 8.8E-16 98.5 6.4 67 8-80 2-68 (340)
36 cd01795 USP48_C USP ubiquitin- 99.1 3.7E-10 8E-15 79.3 6.2 70 12-96 11-81 (107)
37 KOG4248 Ubiquitin-like protein 99.0 5.3E-10 1.1E-14 102.3 6.8 76 7-99 3-80 (1143)
38 PF11976 Rad60-SLD: Ubiquitin- 99.0 1.6E-09 3.4E-14 69.9 7.1 69 7-91 1-72 (72)
39 cd01789 Alp11_N Ubiquitin-like 98.9 6.7E-09 1.5E-13 69.9 8.5 73 7-92 2-81 (84)
40 cd01801 Tsc13_N Ubiquitin-like 98.8 2.1E-08 4.6E-13 66.1 5.5 53 25-89 20-74 (77)
41 PLN02560 enoyl-CoA reductase 98.7 6.5E-08 1.4E-12 79.2 7.4 70 8-89 2-80 (308)
42 KOG0001 Ubiquitin and ubiquiti 98.6 5.4E-07 1.2E-11 55.6 8.8 70 11-94 4-73 (75)
43 PF10302 DUF2407: DUF2407 ubiq 98.5 2.8E-07 6E-12 64.1 6.1 59 9-73 3-64 (97)
44 cd01788 ElonginB Ubiquitin-lik 98.5 5.9E-07 1.3E-11 64.4 6.8 78 6-92 2-80 (119)
45 PF14560 Ubiquitin_2: Ubiquiti 98.4 1.4E-06 3.1E-11 58.5 7.9 72 7-91 2-82 (87)
46 cd00196 UBQ Ubiquitin-like pro 98.2 6.7E-06 1.4E-10 47.7 6.6 65 13-91 4-68 (69)
47 KOG0006 E3 ubiquitin-protein l 98.2 2.5E-06 5.4E-11 70.9 5.5 72 7-93 3-77 (446)
48 PF00789 UBX: UBX domain; Int 98.0 0.00015 3.2E-09 47.7 9.6 73 4-89 4-80 (82)
49 PF11543 UN_NPL4: Nuclear pore 98.0 2E-05 4.3E-10 52.9 5.4 66 5-79 3-73 (80)
50 cd01770 p47_UBX p47-like ubiqu 97.5 0.0011 2.3E-08 44.3 8.0 66 6-78 4-72 (79)
51 cd01774 Faf1_like2_UBX Faf1 ik 97.4 0.0016 3.5E-08 44.0 8.2 65 5-78 3-77 (85)
52 KOG4495 RNA polymerase II tran 97.3 0.00075 1.6E-08 47.4 5.6 75 6-89 2-79 (110)
53 cd01767 UBX UBX (ubiquitin reg 97.2 0.0032 6.8E-08 41.1 7.9 64 6-78 2-70 (77)
54 cd01772 SAKS1_UBX SAKS1-like U 97.2 0.0049 1.1E-07 40.8 8.7 65 5-78 3-72 (79)
55 cd01811 OASL_repeat1 2'-5' oli 97.1 0.0053 1.1E-07 41.2 7.6 63 7-78 1-68 (80)
56 smart00166 UBX Domain present 97.0 0.0082 1.8E-07 39.5 8.4 66 5-78 3-73 (80)
57 KOG4583 Membrane-associated ER 96.8 0.00058 1.2E-08 57.1 1.7 83 4-96 7-91 (391)
58 PF08817 YukD: WXG100 protein 96.7 0.0062 1.4E-07 40.1 5.7 72 6-79 2-74 (79)
59 KOG1872 Ubiquitin-specific pro 96.6 0.0049 1.1E-07 53.3 6.1 63 18-93 13-76 (473)
60 COG5417 Uncharacterized small 96.6 0.021 4.5E-07 38.4 7.4 73 5-80 5-77 (81)
61 KOG1769 Ubiquitin-like protein 96.4 0.055 1.2E-06 38.0 8.9 64 6-79 20-85 (99)
62 cd01771 Faf1_UBX Faf1 UBX doma 96.0 0.098 2.1E-06 34.9 8.5 65 4-78 2-72 (80)
63 PF13019 Telomere_Sde2: Telome 95.8 0.081 1.8E-06 40.1 8.1 82 7-97 1-89 (162)
64 PF15044 CLU_N: Mitochondrial 95.7 0.028 6.1E-07 37.2 4.9 58 24-93 1-59 (76)
65 cd01773 Faf1_like1_UBX Faf1 ik 94.3 0.44 9.6E-06 32.2 7.7 64 5-78 4-73 (82)
66 COG5227 SMT3 Ubiquitin-like pr 94.2 0.35 7.7E-06 33.7 7.0 67 5-79 23-89 (103)
67 KOG0013 Uncharacterized conser 94.0 0.078 1.7E-06 42.0 3.9 64 7-78 146-210 (231)
68 KOG3206 Alpha-tubulin folding 90.6 1.2 2.5E-05 35.4 6.6 60 21-93 16-82 (234)
69 KOG2086 Protein tyrosine phosp 89.9 0.6 1.3E-05 39.7 4.8 66 6-78 305-373 (380)
70 cd00754 MoaD Ubiquitin domain 89.7 2.2 4.7E-05 27.1 6.4 56 16-79 14-69 (80)
71 TIGR01687 moaD_arch MoaD famil 88.5 4.7 0.0001 26.3 7.5 60 16-79 14-77 (88)
72 KOG3493 Ubiquitin-like protein 87.8 0.23 5E-06 32.6 0.8 55 16-78 11-65 (73)
73 PF10209 DUF2340: Uncharacteri 87.1 2.9 6.2E-05 30.4 6.1 57 22-78 20-100 (122)
74 smart00666 PB1 PB1 domain. Pho 85.3 4.7 0.0001 25.8 6.0 46 7-61 2-47 (81)
75 PF06234 TmoB: Toluene-4-monoo 84.8 8.5 0.00018 26.3 7.2 70 8-78 5-76 (85)
76 PF02597 ThiS: ThiS family; I 84.6 4.3 9.3E-05 25.5 5.5 51 21-78 15-65 (77)
77 PLN02799 Molybdopterin synthas 84.4 5.3 0.00012 25.8 6.0 56 15-79 16-71 (82)
78 KOG1639 Steroid reductase requ 82.9 2.8 6.1E-05 34.3 4.9 59 18-78 13-71 (297)
79 PF09379 FERM_N: FERM N-termin 82.3 10 0.00022 24.0 7.9 69 11-92 1-77 (80)
80 smart00144 PI3K_rbd PI3-kinase 82.2 9.5 0.00021 26.5 6.9 69 5-74 16-87 (108)
81 TIGR01682 moaD molybdopterin c 81.9 11 0.00024 24.2 6.8 56 15-79 13-69 (80)
82 PRK08364 sulfur carrier protei 81.6 6.4 0.00014 25.1 5.4 43 21-79 17-59 (70)
83 PF11470 TUG-UBL1: GLUT4 regul 78.4 10 0.00022 24.3 5.6 57 14-78 4-60 (65)
84 PF00564 PB1: PB1 domain; Int 78.3 7.6 0.00016 24.8 5.1 47 7-61 2-48 (84)
85 cd06407 PB1_NLP A PB1 domain i 77.9 8.2 0.00018 25.7 5.2 33 10-42 2-34 (82)
86 PF14453 ThiS-like: ThiS-like 77.1 6.9 0.00015 24.7 4.4 39 20-71 8-46 (57)
87 PF08783 DWNN: DWNN domain; I 72.3 9 0.0002 25.3 4.2 32 9-40 1-33 (74)
88 cd00565 ThiS ThiaminS ubiquiti 72.0 8.8 0.00019 23.8 4.0 47 21-79 8-54 (65)
89 PF08337 Plexin_cytopl: Plexin 71.6 26 0.00057 31.3 8.1 83 5-94 188-291 (539)
90 PF10790 DUF2604: Protein of U 71.4 19 0.0004 23.7 5.4 65 14-94 3-73 (76)
91 smart00295 B41 Band 4.1 homolo 71.3 11 0.00025 27.5 5.1 64 6-76 3-72 (207)
92 PF12754 Blt1: Cell-cycle cont 70.8 1.4 2.9E-05 36.7 0.0 48 27-76 103-160 (309)
93 cd06406 PB1_P67 A PB1 domain i 70.6 18 0.00039 24.3 5.4 35 19-62 12-48 (80)
94 PRK06437 hypothetical protein; 68.8 17 0.00036 23.1 4.8 50 14-79 7-56 (67)
95 cd05992 PB1 The PB1 domain is 66.9 14 0.00031 23.3 4.3 33 8-42 2-35 (81)
96 cd06409 PB1_MUG70 The MUG70 pr 66.7 12 0.00026 25.4 4.0 33 9-42 3-35 (86)
97 cd01787 GRB7_RA RA (RAS-associ 65.6 11 0.00023 25.7 3.6 63 6-73 2-68 (85)
98 PF11620 GABP-alpha: GA-bindin 63.4 30 0.00066 23.7 5.4 69 20-99 5-73 (88)
99 KOG3439 Protein conjugation fa 57.8 46 0.001 23.9 5.8 49 5-62 29-82 (116)
100 cd06396 PB1_NBR1 The PB1 domai 57.6 33 0.00071 23.1 4.8 33 10-42 2-36 (81)
101 PF02824 TGS: TGS domain; Int 56.4 27 0.0006 21.5 4.0 30 9-41 1-30 (60)
102 TIGR02958 sec_mycoba_snm4 secr 54.8 72 0.0016 27.6 7.6 79 7-94 3-82 (452)
103 KOG3391 Transcriptional co-rep 54.8 16 0.00035 27.2 3.2 67 26-98 60-142 (151)
104 PF11069 DUF2870: Protein of u 53.0 19 0.0004 25.2 3.1 23 56-79 3-25 (98)
105 KOG4147 Uncharacterized conser 52.7 78 0.0017 22.8 6.3 75 4-78 5-105 (127)
106 KOG0012 DNA damage inducible p 49.4 41 0.00089 28.8 5.1 53 18-79 13-69 (380)
107 KOG2507 Ubiquitin regulatory p 48.7 39 0.00085 29.7 5.0 68 5-78 313-383 (506)
108 PF14533 USP7_C2: Ubiquitin-sp 47.7 1.2E+02 0.0025 23.4 7.2 50 20-73 36-90 (213)
109 cd01776 Rin1_RA Ubiquitin doma 47.4 90 0.002 21.4 5.8 35 8-42 3-38 (87)
110 PF02192 PI3K_p85B: PI3-kinase 46.7 23 0.0005 23.6 2.7 20 21-40 3-22 (78)
111 PF07491 PPI_Ypi1: Protein pho 45.4 20 0.00044 22.9 2.1 9 106-114 34-42 (60)
112 PF04233 Phage_Mu_F: Phage Mu 45.0 12 0.00027 25.0 1.2 12 104-115 101-112 (112)
113 PF02505 MCR_D: Methyl-coenzym 44.8 54 0.0012 24.7 4.7 53 6-73 67-120 (153)
114 TIGR01683 thiS thiamine biosyn 43.7 76 0.0016 19.4 5.5 51 14-79 3-53 (64)
115 KOG1364 Predicted ubiquitin re 43.1 30 0.00065 29.4 3.4 64 8-78 279-347 (356)
116 PRK11130 moaD molybdopterin sy 43.0 89 0.0019 20.1 6.1 51 22-79 19-70 (81)
117 PF00794 PI3K_rbd: PI3-kinase 42.7 99 0.0021 20.9 5.5 70 4-74 14-85 (106)
118 cd06411 PB1_p51 The PB1 domain 42.5 52 0.0011 22.1 3.8 35 20-61 9-43 (78)
119 cd06408 PB1_NoxR The PB1 domai 41.7 1.1E+02 0.0024 20.7 6.0 34 9-42 3-36 (86)
120 KOG4250 TANK binding protein k 40.8 1.2E+02 0.0025 28.3 6.9 47 10-64 318-364 (732)
121 COG4055 McrD Methyl coenzyme M 40.4 87 0.0019 23.7 5.1 54 11-78 78-132 (165)
122 KOG0007 Splicing factor 3a, su 39.6 14 0.00029 30.7 0.8 47 14-70 290-339 (341)
123 COG5100 NPL4 Nuclear pore prot 37.1 1.8E+02 0.004 25.7 7.3 66 9-79 3-72 (571)
124 smart00143 PI3K_p85B PI3-kinas 36.9 37 0.00081 22.7 2.5 20 21-40 3-22 (78)
125 PF00788 RA: Ras association ( 34.0 1.2E+02 0.0027 19.1 4.8 47 7-58 3-52 (93)
126 TIGR03260 met_CoM_red_D methyl 33.6 1E+02 0.0022 23.1 4.6 41 22-73 78-118 (150)
127 PF06200 tify: tify domain; I 33.4 45 0.00098 19.1 2.1 15 50-64 3-17 (36)
128 PF08154 NLE: NLE (NUC135) dom 31.1 1.4E+02 0.003 18.7 6.0 55 7-66 2-59 (65)
129 PRK12385 fumarate reductase ir 30.3 1.5E+02 0.0033 23.3 5.5 41 1-41 1-48 (244)
130 PTZ00380 microtubule-associate 29.1 92 0.002 22.5 3.6 44 23-73 46-89 (121)
131 PF00894 Luteo_coat: Luteoviru 28.9 1.4E+02 0.003 22.1 4.5 55 6-62 45-117 (138)
132 KOG2689 Predicted ubiquitin re 28.6 87 0.0019 25.9 3.8 35 5-40 209-243 (290)
133 cd01768 RA RA (Ras-associating 28.3 1.6E+02 0.0035 18.7 6.3 23 18-40 13-35 (87)
134 PF11816 DUF3337: Domain of un 28.1 98 0.0021 25.5 4.1 52 23-74 253-312 (331)
135 PF14732 UAE_UbL: Ubiquitin/SU 28.0 1.5E+02 0.0032 19.7 4.3 50 26-78 7-61 (87)
136 PRK05659 sulfur carrier protei 27.6 1.5E+02 0.0032 18.0 4.7 51 14-79 5-55 (66)
137 KOG4102 Uncharacterized conser 27.5 37 0.00081 24.6 1.3 9 106-114 60-68 (121)
138 PF14836 Ubiquitin_3: Ubiquiti 27.5 2E+02 0.0044 19.5 8.0 52 19-78 15-72 (88)
139 cd01775 CYR1_RA Ubiquitin doma 27.3 2.2E+02 0.0048 19.8 6.8 31 9-40 5-35 (97)
140 PRK06083 sulfur carrier protei 26.7 2E+02 0.0043 19.1 7.5 59 5-79 15-73 (84)
141 PF06123 CreD: Inner membrane 26.5 64 0.0014 28.0 2.8 55 6-78 198-252 (430)
142 PF11816 DUF3337: Domain of un 26.1 63 0.0014 26.6 2.6 29 23-62 301-329 (331)
143 cd01777 SNX27_RA Ubiquitin dom 25.3 1.6E+02 0.0035 20.1 4.1 34 6-40 1-34 (87)
144 PRK11715 inner membrane protei 24.0 76 0.0017 27.6 2.8 54 7-78 206-259 (436)
145 cd06404 PB1_aPKC PB1 domain is 23.2 1.4E+02 0.003 20.3 3.4 34 9-42 1-34 (83)
146 PF05520 Citrus_P18: Citrus tr 23.1 50 0.0011 24.2 1.3 16 106-124 134-149 (167)
147 PF14941 OAF: Transcriptional 22.6 1.5E+02 0.0032 23.9 4.0 37 3-40 24-60 (240)
148 PF15349 DCA16: DDB1- and CUL4 22.1 26 0.00056 26.7 -0.3 11 106-116 173-183 (216)
149 cd01612 APG12_C Ubiquitin-like 21.9 2.5E+02 0.0054 18.7 4.6 61 6-72 1-65 (87)
150 PRK08053 sulfur carrier protei 21.6 2.1E+02 0.0045 17.6 5.9 51 14-79 5-55 (66)
151 KOG2561 Adaptor protein NUB1, 21.5 52 0.0011 29.2 1.4 45 27-78 59-103 (568)
152 cd06398 PB1_Joka2 The PB1 doma 21.5 2.7E+02 0.0058 18.8 5.2 38 18-61 10-52 (91)
153 COG5222 Uncharacterized conser 20.9 3.8E+02 0.0081 22.8 6.2 47 9-62 5-54 (427)
154 cd01760 RBD Ubiquitin-like dom 20.8 2.5E+02 0.0054 18.1 4.9 31 9-40 2-32 (72)
155 PF14191 YodL: YodL-like 20.6 2.8E+02 0.0061 19.3 4.7 40 23-62 45-84 (103)
156 PF02991 Atg8: Autophagy prote 20.5 2.5E+02 0.0054 19.5 4.4 45 22-72 37-81 (104)
157 cd01764 Urm1 Urm1-like ubuitin 20.2 2.8E+02 0.0061 18.6 6.4 54 23-79 24-83 (94)
No 1
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=100.00 E-value=2e-33 Score=199.54 Aligned_cols=109 Identities=62% Similarity=1.069 Sum_probs=103.4
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
+|.|+||||+.+|+||.++.|++++||++||++|+++||++++.+|..+++|||||+||+|+|++||++|+++.|++++.
T Consensus 2 ~~~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~ 81 (113)
T cd01814 2 EEQIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGG 81 (113)
T ss_pred CccEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCC
Confidence 68899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEccCCccCCCCCCCC---CCCCcEE
Q 033172 84 VIIMHVVVQPSLAKTKTDSTKG---GCFLASC 112 (125)
Q Consensus 84 ~~tmhlv~~~~~~~kk~~~~~~---~~~~c~C 112 (125)
.+|||||+|++.+.+++++... +..+|+|
T Consensus 82 ~~TmHvvlr~~~~~~~~~k~~~~~~~~~~c~c 113 (113)
T cd01814 82 VITMHVVVQPPLADKKTEKKVDKAPKAVICTC 113 (113)
T ss_pred ceEEEEEecCCCCCccccccccCCcccCCCCC
Confidence 9999999999999999876554 8999998
No 2
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=99.98 E-value=3.9e-32 Score=192.98 Aligned_cols=109 Identities=42% Similarity=0.832 Sum_probs=87.2
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
|.|+||||+.+|+|+.++.|++++||++||+.|.++||+||+..|.+++++||||+||+|+|++||++++++.++.+..+
T Consensus 1 ~~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~ 80 (111)
T PF13881_consen 1 DKIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGP 80 (111)
T ss_dssp TSEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--
T ss_pred CeEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCC
Confidence 67999999999998999999999999999999999999999988999999999999999999999999999999887778
Q ss_pred EEEEEEEccCCccCCCCCCC--CCCCCcEEE
Q 033172 85 IIMHVVVQPSLAKTKTDSTK--GGCFLASCS 113 (125)
Q Consensus 85 ~tmhlv~~~~~~~kk~~~~~--~~~~~c~C~ 113 (125)
++|||+++++.+.++.+++. .++++|+|+
T Consensus 81 ~vmHlvvrp~~~~~~~~~~~~~~k~~~C~C~ 111 (111)
T PF13881_consen 81 TVMHLVVRPNAPEPNEEKKRKKPKQSGCSCC 111 (111)
T ss_dssp EEEEEEE-SSSSSSSSSS-----STT-----
T ss_pred EEEEEEecCCCCCccccccccCcCCCCCCCC
Confidence 99999999999988876543 489999996
No 3
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.75 E-value=5.8e-18 Score=110.86 Aligned_cols=73 Identities=23% Similarity=0.397 Sum_probs=64.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm 87 (125)
+|.+|+.+|+.+ .+++++++||++||++|++. +.+| +++|||+|+||.|+|+.+|++|+|+++ +++
T Consensus 2 ~i~vk~~~G~~~-~l~v~~~~tV~~lK~~i~~~-----~gi~--~~~q~L~~~G~~L~d~~~L~~~~i~~~------~~l 67 (74)
T cd01807 2 FLTVKLLQGREC-SLQVSEKESVSTLKKLVSEH-----LNVP--EEQQRLLFKGKALADDKRLSDYSIGPN------AKL 67 (74)
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEECCCCCCHHHCCCCCC------CEE
Confidence 578888999654 78999999999999999998 2233 999999999999999999999999998 789
Q ss_pred EEEEccC
Q 033172 88 HVVVQPS 94 (125)
Q Consensus 88 hlv~~~~ 94 (125)
|++++++
T Consensus 68 ~l~~~~~ 74 (74)
T cd01807 68 NLVVRPP 74 (74)
T ss_pred EEEEcCC
Confidence 9999864
No 4
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.74 E-value=5.5e-18 Score=114.05 Aligned_cols=74 Identities=18% Similarity=0.171 Sum_probs=61.7
Q ss_pred EEEEEEeCCCCee-eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCC--CCCCCcCCc
Q 033172 7 IDIKFRLYDGSDI-GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK--IPYGEVPGG 83 (125)
Q Consensus 7 v~l~~~~~~g~~~-~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~--i~~gd~~~~ 83 (125)
++|.+|..+|+.+ ..+++++++||++||++|++.+| ... ++++|||||+||+|+|+.||++|. +..+
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~---~~~--~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~----- 71 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYP---SKP--LEQDQRLIYSGKLLPDHLKLRDVLRKQDEY----- 71 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcC---CCC--ChhHeEEEEcCeeccchhhHHHHhhcccCC-----
Confidence 6889999999652 24555899999999999999865 122 279999999999999999999996 8876
Q ss_pred eEEEEEEE
Q 033172 84 VIIMHVVV 91 (125)
Q Consensus 84 ~~tmhlv~ 91 (125)
.+||||.
T Consensus 72 -~tiHLV~ 78 (79)
T cd01790 72 -HMVHLVC 78 (79)
T ss_pred -ceEEEEe
Confidence 7999986
No 5
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.73 E-value=1.1e-17 Score=109.54 Aligned_cols=68 Identities=28% Similarity=0.410 Sum_probs=61.6
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t 86 (125)
+++|+.+|+.+ .+++++++||++||++|++. +| +++|||||+|+.|+|+.+|++|+|+.+ ++
T Consensus 1 ~~vk~~~G~~~-~l~v~~~~TV~~lK~~I~~~~gi~---------~~~q~Li~~G~~L~D~~~l~~~~i~~~------~t 64 (70)
T cd01794 1 LKVRLSTGKDV-KLSVSSKDTVGQLKKQLQAAEGVD---------PCCQRWFFSGKLLTDKTRLQETKIQKD------YV 64 (70)
T ss_pred CeEEcCCCCEE-EEEECCcChHHHHHHHHHHHhCCC---------HHHeEEEECCeECCCCCCHHHcCCCCC------CE
Confidence 57899999665 79999999999999999988 55 999999999999999999999999977 79
Q ss_pred EEEEEc
Q 033172 87 MHVVVQ 92 (125)
Q Consensus 87 mhlv~~ 92 (125)
+||++.
T Consensus 65 v~~~~~ 70 (70)
T cd01794 65 VQVIVN 70 (70)
T ss_pred EEEEeC
Confidence 999863
No 6
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.71 E-value=3e-17 Score=107.59 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=61.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm 87 (125)
+|.+|. + +...+++++++||++||++|++. +.+| +++|||||+||.|+|+.||++|+|+++ +++
T Consensus 2 qi~vk~--~-~~~~l~v~~~~tV~~lK~~i~~~-----~gip--~~~q~Li~~Gk~L~D~~tL~~~~i~~~------~tl 65 (74)
T cd01793 2 QLFVRA--Q-NTHTLEVTGQETVSDIKAHVAGL-----EGID--VEDQVLLLAGVPLEDDATLGQCGVEEL------CTL 65 (74)
T ss_pred EEEEEC--C-CEEEEEECCcCcHHHHHHHHHhh-----hCCC--HHHEEEEECCeECCCCCCHHHcCCCCC------CEE
Confidence 344554 3 33578999999999999999998 2233 999999999999999999999999988 799
Q ss_pred EEEEccCCc
Q 033172 88 HVVVQPSLA 96 (125)
Q Consensus 88 hlv~~~~~~ 96 (125)
|++++++++
T Consensus 66 ~l~~~l~GG 74 (74)
T cd01793 66 EVAGRLLGG 74 (74)
T ss_pred EEEEecCCC
Confidence 999998764
No 7
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.71 E-value=3.8e-17 Score=109.02 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=64.9
Q ss_pred EEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~-v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
+|.+|+.+|..+..++ +++++||.+||++|++. +| +++|||||+||+|+|+.+|++|+|.++
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~---------~~~QrLi~~Gk~L~D~~tL~~y~i~~~------ 66 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVE---------PECQRLFYRGKQMEDGHTLFDYNVGLN------ 66 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCC---------HHHeEEEeCCEECCCCCCHHHcCCCCC------
Confidence 5788999996544674 89999999999999998 55 999999999999999999999999999
Q ss_pred EEEEEEEccCC
Q 033172 85 IIMHVVVQPSL 95 (125)
Q Consensus 85 ~tmhlv~~~~~ 95 (125)
+++|+++++.+
T Consensus 67 ~~i~l~~~~~~ 77 (78)
T cd01797 67 DIIQLLVRQDP 77 (78)
T ss_pred CEEEEEEecCC
Confidence 78999998765
No 8
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.70 E-value=6.9e-17 Score=113.11 Aligned_cols=76 Identities=21% Similarity=0.256 Sum_probs=68.4
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
+..+|.||..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 26 ~~M~I~Vk~l~G~~~-~leV~~~~TV~~lK~kI~~~~gip---------~~~QrLi~~Gk~L~D~~tL~dy~I~~~---- 91 (103)
T cd01802 26 DTMELFIETLTGTCF-ELRVSPFETVISVKAKIQRLEGIP---------VAQQHLIWNNMELEDEYCLNDYNISEG---- 91 (103)
T ss_pred CCEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------hHHEEEEECCEECCCCCcHHHcCCCCC----
Confidence 568899999999655 68999999999999999988 45 999999999999999999999999998
Q ss_pred ceEEEEEEEccCCc
Q 033172 83 GVIIMHVVVQPSLA 96 (125)
Q Consensus 83 ~~~tmhlv~~~~~~ 96 (125)
+++|++++..++
T Consensus 92 --stL~l~~~l~GG 103 (103)
T cd01802 92 --CTLKLVLAMRGG 103 (103)
T ss_pred --CEEEEEEecCCC
Confidence 789999987653
No 9
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.69 E-value=9.6e-17 Score=105.20 Aligned_cols=73 Identities=19% Similarity=0.249 Sum_probs=63.2
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEE
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMH 88 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmh 88 (125)
|.+|+..|+. ..+++++++||++||++|++. +.+| +++|||+|+||.|+|+++|++|+|+++ +++|
T Consensus 1 i~vk~~~g~~-~~l~v~~~~tV~~lK~~I~~~-----~gi~--~~~q~L~~~G~~L~D~~tL~~~~i~~~------~tl~ 66 (74)
T cd01810 1 ILVRNDKGRS-SIYEVQLTQTVATLKQQVSQR-----ERVQ--ADQFWLSFEGRPMEDEHPLGEYGLKPG------CTVF 66 (74)
T ss_pred CEEECCCCCE-EEEEECCcChHHHHHHHHHHH-----hCCC--HHHeEEEECCEECCCCCCHHHcCCCCC------CEEE
Confidence 4578899955 479999999999999999988 1223 999999999999999999999999998 6899
Q ss_pred EEEccCC
Q 033172 89 VVVQPSL 95 (125)
Q Consensus 89 lv~~~~~ 95 (125)
++++..+
T Consensus 67 l~~~l~g 73 (74)
T cd01810 67 MNLRLRG 73 (74)
T ss_pred EEEEccC
Confidence 9988765
No 10
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.69 E-value=1e-16 Score=103.82 Aligned_cols=68 Identities=24% Similarity=0.458 Sum_probs=61.3
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t 86 (125)
|.+|+.+|..+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++ ++
T Consensus 1 i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gi~---------~~~q~Li~~G~~L~d~~~l~~~~i~~~------st 64 (70)
T cd01798 1 VYVRTNTGHTF-PVEVDPDTDIKQLKEVVAKRQGVP---------PDQLRVIFAGKELRNTTTIQECDLGQQ------SI 64 (70)
T ss_pred CEEEcCCCCEE-EEEECCCChHHHHHHHHHHHHCCC---------HHHeEEEECCeECCCCCcHHHcCCCCC------CE
Confidence 45788899655 78999999999999999999 55 899999999999999999999999998 79
Q ss_pred EEEEEc
Q 033172 87 MHVVVQ 92 (125)
Q Consensus 87 mhlv~~ 92 (125)
+|++.|
T Consensus 65 l~l~~~ 70 (70)
T cd01798 65 LHAVRR 70 (70)
T ss_pred EEEEeC
Confidence 999875
No 11
>PTZ00044 ubiquitin; Provisional
Probab=99.69 E-value=1.7e-16 Score=103.71 Aligned_cols=72 Identities=25% Similarity=0.399 Sum_probs=65.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
+|.+|+.+|..+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|++.++ .
T Consensus 2 ~i~vk~~~G~~~-~l~v~~~~tv~~lK~~i~~~~gi~---------~~~q~L~~~g~~L~d~~~l~~~~i~~~------~ 65 (76)
T PTZ00044 2 QILIKTLTGKKQ-SFNFEPDNTVQQVKMALQEKEGID---------VKQIRLIYSGKQMSDDLKLSDYKVVPG------S 65 (76)
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------HHHeEEEECCEEccCCCcHHHcCCCCC------C
Confidence 578889999654 78999999999999999999 55 999999999999999999999999998 7
Q ss_pred EEEEEEccCC
Q 033172 86 IMHVVVQPSL 95 (125)
Q Consensus 86 tmhlv~~~~~ 95 (125)
++|++++..+
T Consensus 66 ~i~l~~~~~g 75 (76)
T PTZ00044 66 TIHMVLQLRG 75 (76)
T ss_pred EEEEEEEccC
Confidence 8999998765
No 12
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.68 E-value=1.5e-16 Score=105.17 Aligned_cols=69 Identities=17% Similarity=0.231 Sum_probs=62.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
+.|.|+...|+.+ .+++++++||++||++|++. +| +++|||||+|++|+|+.||++|||.+|
T Consensus 2 ~~i~vkt~~Gk~~-~~~v~~~~TV~~LK~~I~~~~~~~---------~~~qrLi~~Gk~L~D~~tL~~ygi~~~------ 65 (73)
T cd01791 2 IEVVCNDRLGKKV-RVKCNPDDTIGDLKKLIAAQTGTR---------PEKIVLKKWYTIFKDHISLGDYEIHDG------ 65 (73)
T ss_pred EEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------hHHEEEEeCCcCCCCCCCHHHcCCCCC------
Confidence 5788888889665 67999999999999999988 44 999999999999999999999999999
Q ss_pred EEEEEEE
Q 033172 85 IIMHVVV 91 (125)
Q Consensus 85 ~tmhlv~ 91 (125)
+++||..
T Consensus 66 stv~l~~ 72 (73)
T cd01791 66 MNLELYY 72 (73)
T ss_pred CEEEEEe
Confidence 7899854
No 13
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.67 E-value=4.1e-16 Score=101.14 Aligned_cols=72 Identities=26% Similarity=0.435 Sum_probs=65.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
.|.++..+|+.+ .++++++.||++||++|++. +| +++|||+|+|+.|+|+.+|++|++.+| .
T Consensus 2 ~i~v~~~~g~~~-~~~v~~~~tv~~lK~~i~~~~g~~---------~~~qrL~~~g~~L~d~~tl~~~~i~~g------~ 65 (76)
T cd01806 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDDKTAADYKLEGG------S 65 (76)
T ss_pred EEEEEeCCCCEE-EEEECCCCCHHHHHHHHhHhhCCC---------hhhEEEEECCeEccCCCCHHHcCCCCC------C
Confidence 688889999665 78999999999999999998 55 899999999999999999999999999 7
Q ss_pred EEEEEEccCC
Q 033172 86 IMHVVVQPSL 95 (125)
Q Consensus 86 tmhlv~~~~~ 95 (125)
++|++++..+
T Consensus 66 ~i~l~~~~~g 75 (76)
T cd01806 66 VLHLVLALRG 75 (76)
T ss_pred EEEEEEEccC
Confidence 8999998654
No 14
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.65 E-value=6.5e-16 Score=102.67 Aligned_cols=73 Identities=16% Similarity=0.255 Sum_probs=64.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
.+|.++...|+.+ ++++++++||++||++|+++ +| +++|||+|+|+.|+|+ +|++|||++|
T Consensus 2 m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~~~~~---------~~~qrL~~~Gk~L~d~-~L~~~gi~~~------ 64 (78)
T cd01804 2 MNLNIHSTTGTRF-DLSVPPDETVEGLKKRISQRLKVP---------KERLALLHRETRLSSG-KLQDLGLGDG------ 64 (78)
T ss_pred eEEEEEECCCCEE-EEEECCcCHHHHHHHHHHHHhCCC---------hHHEEEEECCcCCCCC-cHHHcCCCCC------
Confidence 5788899999664 79999999999999999988 44 8999999999999999 9999999998
Q ss_pred EEEEEEEccCCc
Q 033172 85 IIMHVVVQPSLA 96 (125)
Q Consensus 85 ~tmhlv~~~~~~ 96 (125)
+++|++....++
T Consensus 65 ~~i~l~~~~~~~ 76 (78)
T cd01804 65 SKLTLVPTVEAG 76 (78)
T ss_pred CEEEEEeecccc
Confidence 689998877543
No 15
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.65 E-value=9.9e-16 Score=98.11 Aligned_cols=66 Identities=30% Similarity=0.494 Sum_probs=59.8
Q ss_pred EeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEE
Q 033172 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHV 89 (125)
Q Consensus 12 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhl 89 (125)
|+.+|+. ..+++++++||.+||++|++. +| ++.|||+|+|+.|+|+.+|++|+|.+| .+||+
T Consensus 1 k~~~g~~-~~~~v~~~~tV~~lK~~i~~~~~~~---------~~~~~L~~~G~~L~d~~tL~~~~i~~~------~~I~l 64 (69)
T PF00240_consen 1 KTLSGKT-FTLEVDPDDTVADLKQKIAEETGIP---------PEQQRLIYNGKELDDDKTLSDYGIKDG------STIHL 64 (69)
T ss_dssp EETTSEE-EEEEEETTSBHHHHHHHHHHHHTST---------GGGEEEEETTEEESTTSBTGGGTTSTT------EEEEE
T ss_pred CCCCCcE-EEEEECCCCCHHHhhhhcccccccc---------cccceeeeeeecccCcCcHHHcCCCCC------CEEEE
Confidence 5678854 479999999999999999999 54 999999999999999999999999999 78999
Q ss_pred EEcc
Q 033172 90 VVQP 93 (125)
Q Consensus 90 v~~~ 93 (125)
+.++
T Consensus 65 ~~k~ 68 (69)
T PF00240_consen 65 VIKP 68 (69)
T ss_dssp EESS
T ss_pred EEec
Confidence 8875
No 16
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.65 E-value=7.2e-16 Score=100.19 Aligned_cols=71 Identities=21% Similarity=0.386 Sum_probs=61.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t 86 (125)
+.|.|+..+|. . .+++++++||++||++|++... +| +++|||+|+||.|+|+.+|++|+++++ ++
T Consensus 1 ~~i~vk~~~g~-~-~l~v~~~~TV~~lK~~I~~~~~-----i~--~~~~~Li~~Gk~L~d~~tL~~~~i~~~------st 65 (71)
T cd01808 1 IKVTVKTPKDK-E-EIEIAEDASVKDFKEAVSKKFK-----AN--QEQLVLIFAGKILKDTDTLTQHNIKDG------LT 65 (71)
T ss_pred CEEEEEcCCCC-E-EEEECCCChHHHHHHHHHHHhC-----CC--HHHEEEEECCeEcCCCCcHHHcCCCCC------CE
Confidence 35778888884 4 7899999999999999999832 23 899999999999999999999999998 78
Q ss_pred EEEEEc
Q 033172 87 MHVVVQ 92 (125)
Q Consensus 87 mhlv~~ 92 (125)
+|++++
T Consensus 66 l~l~~~ 71 (71)
T cd01808 66 VHLVIK 71 (71)
T ss_pred EEEEEC
Confidence 999875
No 17
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.64 E-value=1.1e-15 Score=99.20 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=65.5
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
.|.+|..+|+.+ .+++++++||++||++|++. +| ++.|||+|+|+.|+|+.+|++|++.++ +
T Consensus 2 ~i~v~~~~g~~~-~~~v~~~~tV~~lK~~i~~~~g~~---------~~~q~L~~~g~~L~d~~~L~~~~i~~~------~ 65 (76)
T cd01803 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (76)
T ss_pred EEEEEcCCCCEE-EEEECCcCcHHHHHHHHHHHhCCC---------HHHeEEEECCEECCCCCcHHHcCCCCC------C
Confidence 577888899665 68999999999999999998 55 899999999999999999999999998 7
Q ss_pred EEEEEEccCCc
Q 033172 86 IMHVVVQPSLA 96 (125)
Q Consensus 86 tmhlv~~~~~~ 96 (125)
++|++++..++
T Consensus 66 ~i~l~~~~~gg 76 (76)
T cd01803 66 TLHLVLRLRGG 76 (76)
T ss_pred EEEEEEEccCC
Confidence 89999987653
No 18
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.64 E-value=7.8e-16 Score=101.54 Aligned_cols=71 Identities=21% Similarity=0.388 Sum_probs=61.6
Q ss_pred CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEEccC
Q 033172 15 DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPS 94 (125)
Q Consensus 15 ~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~~~~ 94 (125)
+| .+.++++++++||++||++|++. +.+| +++|||+|+|+.|+|+.+|++|++.++ .++||++++.
T Consensus 6 ~g-~~~~l~v~~~~TV~~lK~~i~~~-----~gip--~~~q~L~~~G~~L~d~~tL~~~~i~~g------~~l~v~~~~~ 71 (76)
T cd01800 6 NG-QMLNFTLQLSDPVSVLKVKIHEE-----TGMP--AGKQKLQYEGIFIKDSNSLAYYNLANG------TIIHLQLKER 71 (76)
T ss_pred CC-eEEEEEECCCCcHHHHHHHHHHH-----HCCC--HHHEEEEECCEEcCCCCcHHHcCCCCC------CEEEEEEecC
Confidence 56 45579999999999999999988 2233 999999999999999999999999998 6899999988
Q ss_pred CccCC
Q 033172 95 LAKTK 99 (125)
Q Consensus 95 ~~~kk 99 (125)
++.||
T Consensus 72 gg~~~ 76 (76)
T cd01800 72 GGRKK 76 (76)
T ss_pred CCcCC
Confidence 76654
No 19
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.62 E-value=1.9e-15 Score=97.09 Aligned_cols=72 Identities=31% Similarity=0.502 Sum_probs=62.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t 86 (125)
++|.++..+|.. ..+++++++||++||++|++.. +.| ++.|||+|+|+.|+|+.+|++|++.+| ++
T Consensus 1 i~i~vk~~~g~~-~~~~v~~~~tv~~lK~~i~~~~-----gi~--~~~q~L~~~g~~L~d~~~L~~~~i~~~------~~ 66 (72)
T cd01809 1 IEIKVKTLDSQT-HTFTVEEEITVLDLKEKIAEEV-----GIP--VEQQRLIYSGRVLKDDETLSEYKVEDG------HT 66 (72)
T ss_pred CEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHHHH-----CcC--HHHeEEEECCEECCCcCcHHHCCCCCC------CE
Confidence 468888899954 5799999999999999999982 222 899999999999999999999999998 78
Q ss_pred EEEEEc
Q 033172 87 MHVVVQ 92 (125)
Q Consensus 87 mhlv~~ 92 (125)
+|++.+
T Consensus 67 l~l~~~ 72 (72)
T cd01809 67 IHLVKR 72 (72)
T ss_pred EEEEeC
Confidence 999864
No 20
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.62 E-value=2.3e-15 Score=98.42 Aligned_cols=74 Identities=28% Similarity=0.350 Sum_probs=61.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm 87 (125)
+|.++..+|..+ .+++++++||++||++|++.. .++.++++|||+|+|+.|+|+.+|++|++++| +++
T Consensus 2 ~i~vk~~~g~~~-~l~v~~~~TV~~lK~~i~~~~-----~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~------~~i 69 (77)
T cd01805 2 KITFKTLKQQTF-PIEVDPDDTVAELKEKIEEEK-----GCDYPPEQQKLIYSGKILKDDTTLEEYKIDEK------DFV 69 (77)
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHhh-----CCCCChhHeEEEECCEEccCCCCHHHcCCCCC------CEE
Confidence 577888999554 789999999999999999982 11001899999999999999999999999998 567
Q ss_pred EEEEcc
Q 033172 88 HVVVQP 93 (125)
Q Consensus 88 hlv~~~ 93 (125)
|++++.
T Consensus 70 ~~~~~~ 75 (77)
T cd01805 70 VVMVSK 75 (77)
T ss_pred EEEEec
Confidence 776654
No 21
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.61 E-value=2.3e-15 Score=100.17 Aligned_cols=72 Identities=24% Similarity=0.356 Sum_probs=64.7
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEE--EecCeecCCCCccccCCCCCCCcCC
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrL--I~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
++|.++...|+.+ .+++++++||++||++|++. +| +++||| +|.|++|+|+++|++||+.+|
T Consensus 3 ~~i~Vk~~~G~~~-~~~v~~~~TV~~lK~~I~~~~~i~---------~~~qrL~~~~~G~~L~D~~tL~~~gi~~g---- 68 (80)
T cd01792 3 WDLKVKMLGGNEF-LVSLRDSMTVSELKQQIAQKIGVP---------AFQQRLAHLDSREVLQDGVPLVSQGLGPG---- 68 (80)
T ss_pred eEEEEEeCCCCEE-EEEcCCCCcHHHHHHHHHHHhCCC---------HHHEEEEeccCCCCCCCCCCHHHcCCCCC----
Confidence 6889999999665 67999999999999999998 44 999999 999999999999999999998
Q ss_pred ceEEEEEEEccC
Q 033172 83 GVIIMHVVVQPS 94 (125)
Q Consensus 83 ~~~tmhlv~~~~ 94 (125)
+++|++++..
T Consensus 69 --s~l~l~~~~~ 78 (80)
T cd01792 69 --STVLLVVQNC 78 (80)
T ss_pred --CEEEEEEEcc
Confidence 6899988754
No 22
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.58 E-value=4.3e-15 Score=97.03 Aligned_cols=67 Identities=13% Similarity=0.199 Sum_probs=57.1
Q ss_pred EEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CccccCCCCCCCcCCceEE
Q 033172 9 IKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPGGVII 86 (125)
Q Consensus 9 l~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~-~tL~~~~i~~gd~~~~~~t 86 (125)
|+|++. +|.. ..+++++++||++||++|++. +++| +++|||||+||.|+|+ .+|++|+|++| .+
T Consensus 1 l~v~~~~~g~~-~~l~v~~~~TV~~lK~~I~~~-----~gip--~~~q~Li~~Gk~L~D~~~~L~~~gi~~~------~~ 66 (71)
T cd01796 1 ITVYTARSETT-FSLDVDPDLELENFKALCEAE-----SGIP--ASQQQLIYNGRELVDNKRLLALYGVKDG------DL 66 (71)
T ss_pred CEEEECCCCCE-EEEEECCcCCHHHHHHHHHHH-----hCCC--HHHeEEEECCeEccCCcccHHHcCCCCC------CE
Confidence 467888 7754 579999999999999999998 2233 9999999999999887 68999999999 57
Q ss_pred EEE
Q 033172 87 MHV 89 (125)
Q Consensus 87 mhl 89 (125)
+|+
T Consensus 67 l~l 69 (71)
T cd01796 67 VVL 69 (71)
T ss_pred EEE
Confidence 776
No 23
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.53 E-value=1e-14 Score=97.32 Aligned_cols=58 Identities=26% Similarity=0.390 Sum_probs=48.7
Q ss_pred CCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEEc
Q 033172 25 SSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQ 92 (125)
Q Consensus 25 ~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~~ 92 (125)
+.++||.+||++|+++++ +.+ .++++|||||+||+|+|+.||++|+|++| .++||+.+
T Consensus 18 ~~~~TV~~LK~kI~~~~~---egi-~~~dqQrLIy~GKiL~D~~TL~dygI~~g------stlhLv~~ 75 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLP---DSL-PDPELIDLIHCGRKLKDDQTLDFYGIQSG------STIHILRK 75 (75)
T ss_pred CccCcHHHHHHHHHHhhc---cCC-CChHHeEEEeCCcCCCCCCcHHHcCCCCC------CEEEEEeC
Confidence 357899999999999953 111 12899999999999999999999999999 78999853
No 24
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-14 Score=93.41 Aligned_cols=69 Identities=25% Similarity=0.457 Sum_probs=61.6
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm 87 (125)
.|+.++.+|+.+ .++++|+++|..+|++|+++ +++| +.+|||||+||++.|+.|-++|++.-| +++
T Consensus 2 ~iKvktLt~KeI-eidIep~DkverIKErvEEk-----eGIP--p~qqrli~~gkqm~DD~tA~~Y~~~~G------SVl 67 (70)
T KOG0005|consen 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEK-----EGIP--PQQQRLIYAGKQMNDDKTAAHYNLLGG------SVL 67 (70)
T ss_pred eeeEeeeccceE-EEeeCcchHHHHHHHHhhhh-----cCCC--chhhhhhhccccccccccHHHhhhccc------eeE
Confidence 367888999877 78999999999999999998 3444 999999999999999999999999988 789
Q ss_pred EEE
Q 033172 88 HVV 90 (125)
Q Consensus 88 hlv 90 (125)
|++
T Consensus 68 Hlv 70 (70)
T KOG0005|consen 68 HLV 70 (70)
T ss_pred eeC
Confidence 975
No 25
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=99.52 E-value=5.5e-14 Score=90.28 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=58.4
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
|+|+++.. | ...++++++++||++||++|++. +| +++|||+|.|+.|+|+.+|++|++.+|
T Consensus 1 i~i~vk~~-g-~~~~i~v~~~~tv~~lK~~i~~~~gi~---------~~~q~L~~~g~~l~d~~~L~~~~i~~g------ 63 (71)
T cd01812 1 IRVRVKHG-G-ESHDLSISSQATFGDLKKMLAPVTGVE---------PRDQKLIFKGKERDDAETLDMSGVKDG------ 63 (71)
T ss_pred CEEEEEEC-C-EEEEEEECCCCcHHHHHHHHHHhhCCC---------hHHeEEeeCCcccCccCcHHHcCCCCC------
Confidence 46777776 6 44578999999999999999988 55 899999999999999999999999998
Q ss_pred EEEEEE
Q 033172 85 IIMHVV 90 (125)
Q Consensus 85 ~tmhlv 90 (125)
.++|++
T Consensus 64 ~~l~v~ 69 (71)
T cd01812 64 SKVMLL 69 (71)
T ss_pred CEEEEe
Confidence 577875
No 26
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=99.50 E-value=4.6e-14 Score=120.51 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=66.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
.++|++|..++ + +.|.|..+.||.++|+.|+..+. +++++|+|||+||+|+|++||..|||.+| +
T Consensus 15 ~irV~Vkt~~d-k-~~~~V~~~ssV~qlKE~I~~~f~-------a~~dqlvLIfaGrILKD~dTL~~~gI~Dg------~ 79 (493)
T KOG0010|consen 15 LIRVTVKTPKD-K-YEVNVASDSSVLQLKELIAQRFG-------APPDQLVLIYAGRILKDDDTLKQYGIQDG------H 79 (493)
T ss_pred eeEEEEecCCc-c-eeEecccchHHHHHHHHHHHhcC-------CChhHeeeeecCccccChhhHHHcCCCCC------c
Confidence 47788888777 3 47999999999999999999954 23999999999999999999999999999 8
Q ss_pred EEEEEEccCCc
Q 033172 86 IMHVVVQPSLA 96 (125)
Q Consensus 86 tmhlv~~~~~~ 96 (125)
|||||++....
T Consensus 80 TvHLVik~~~~ 90 (493)
T KOG0010|consen 80 TVHLVIKSQPR 90 (493)
T ss_pred EEEEEeccCCC
Confidence 99999986643
No 27
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.48 E-value=4.1e-13 Score=90.85 Aligned_cols=77 Identities=16% Similarity=0.323 Sum_probs=69.5
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
.+.|.|+++..+|..+ .++|.+++++..||++++++ +| +++|||+|.|+.|+|+.|+++|++.++
T Consensus 9 ~~~i~I~v~~~~g~~~-~~~v~~~~~l~~l~~~y~~~~gi~---------~~~~rf~f~G~~L~~~~T~~~l~m~d~--- 75 (87)
T cd01763 9 SEHINLKVKGQDGNEV-FFKIKRSTPLKKLMEAYCQRQGLS---------MNSVRFLFDGQRIRDNQTPDDLGMEDG--- 75 (87)
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCCHHHHHHHHHHHHhCCC---------ccceEEEECCeECCCCCCHHHcCCCCC---
Confidence 5789999999999665 68999999999999999998 54 899999999999999999999999999
Q ss_pred CceEEEEEEEccCCc
Q 033172 82 GGVIIMHVVVQPSLA 96 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~ 96 (125)
.++|++++..++
T Consensus 76 ---d~I~v~l~l~GG 87 (87)
T cd01763 76 ---DEIEVMLEQTGG 87 (87)
T ss_pred ---CEEEEEEecccC
Confidence 689999887654
No 28
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.7e-13 Score=102.08 Aligned_cols=77 Identities=23% Similarity=0.376 Sum_probs=66.2
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEE
Q 033172 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (125)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv 90 (125)
++...|..+ .+++++++||.++|++|++. |.+| +++|||||+|+.|+|..+|+||+|+.. +|+|++
T Consensus 5 Vk~l~~kti-~~eve~~~ti~~~Kakiq~~-----egIp--~dqqrlifag~qLedgrtlSDY~Iqke------stl~l~ 70 (156)
T KOG0004|consen 5 VKTLTGKTI-TLEVEANDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STLHLV 70 (156)
T ss_pred hhhccccce-eeeecccccHHHHHHhhhcc-----cCCC--chhhhhhhhhcccccCCcccccccccc------ceEEEE
Confidence 344566443 68999999999999999977 4455 999999999999999999999999977 899999
Q ss_pred EccCCccCCCC
Q 033172 91 VQPSLAKTKTD 101 (125)
Q Consensus 91 ~~~~~~~kk~~ 101 (125)
++..++.+++.
T Consensus 71 l~l~Gg~kkrk 81 (156)
T KOG0004|consen 71 LRLRGGAKKRK 81 (156)
T ss_pred EEecCCccccc
Confidence 99999988763
No 29
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.41 E-value=1.1e-12 Score=109.90 Aligned_cols=67 Identities=34% Similarity=0.501 Sum_probs=57.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.|.||+.+|+.+ .++|++++||.+||++|++.. ++...| +++|||||+||+|+|+++|++|+|++++
T Consensus 2 kItVKtl~g~~~-~IeV~~~~TV~dLK~kI~~~~--g~~~ip--~~~QkLIy~GkiL~Dd~tL~dy~I~e~~ 68 (378)
T TIGR00601 2 TLTFKTLQQQKF-KIDMEPDETVKELKEKIEAEQ--GKDAYP--VAQQKLIYSGKILSDDKTVREYKIKEKD 68 (378)
T ss_pred EEEEEeCCCCEE-EEEeCCcChHHHHHHHHHHhh--CCCCCC--hhHeEEEECCEECCCCCcHHHcCCCCCC
Confidence 688899999665 789999999999999999872 111233 8999999999999999999999999884
No 30
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.40 E-value=7.9e-13 Score=87.31 Aligned_cols=60 Identities=23% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe---cCeecCCCCccccCCCCCCCcCCceEEEEE
Q 033172 15 DGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS---SGKILENNKTVGQCKIPYGEVPGGVIIMHV 89 (125)
Q Consensus 15 ~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~---~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhl 89 (125)
.| ..+++++++++||++||++|++. +| +++||||| .|+.|+|+.+|++|++++| ..++|
T Consensus 8 ~g-~~~~v~v~~~~Tv~~lK~~i~~~tgvp---------~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g------~~i~l 71 (74)
T cd01813 8 GG-QEYSVTTLSEDTVLDLKQFIKTLTGVL---------PERQKLLGLKVKGKPAEDDVKISALKLKPN------TKIMM 71 (74)
T ss_pred CC-EEEEEEECCCCCHHHHHHHHHHHHCCC---------HHHEEEEeecccCCcCCCCcCHHHcCCCCC------CEEEE
Confidence 44 34579999999999999999998 55 99999997 9999999999999999998 45665
Q ss_pred E
Q 033172 90 V 90 (125)
Q Consensus 90 v 90 (125)
+
T Consensus 72 m 72 (74)
T cd01813 72 M 72 (74)
T ss_pred E
Confidence 4
No 31
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=99.36 E-value=2.4e-12 Score=80.08 Aligned_cols=61 Identities=30% Similarity=0.495 Sum_probs=53.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
++|++|..+ .. ..+++++++||++||++|++. +| ++.|||+|+|+.|+|+.+|++|++++|
T Consensus 1 ~~i~vk~~~-~~-~~~~v~~~~tv~~lk~~i~~~~~~~---------~~~~~L~~~g~~L~d~~tL~~~~i~~~ 63 (64)
T smart00213 1 IELTVKTLD-GT-ITLEVKPSDTVSELKEKIAELTGIP---------VEQQRLIYKGKVLEDDRTLADYNIQDG 63 (64)
T ss_pred CEEEEEECC-ce-EEEEECCCCcHHHHHHHHHHHHCCC---------HHHEEEEECCEECCCCCCHHHcCCcCC
Confidence 357778877 33 478999999999999999998 44 889999999999999999999999876
No 32
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=1.2e-13 Score=98.04 Aligned_cols=73 Identities=22% Similarity=0.337 Sum_probs=62.7
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEE
Q 033172 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (125)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv 90 (125)
.+...|+. ..++++|++||.+||++|... +++| +++|||||+||+|+|+.||++|+|..- +|+|++
T Consensus 5 ~~~~~GKT-~~le~EpS~ti~~vKA~i~~~-----~Gi~--~~~~~L~~~~k~LED~~Tla~Y~i~~~------~Tl~~~ 70 (128)
T KOG0003|consen 5 VKTLTGKT-ITLEVEPSDTIDNVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLADYNIQKE------STLHLV 70 (128)
T ss_pred EEEeeCce-EEEEecccchHHHHHHHhccc-----cCCC--HHHHHHHhcccccccCCcccccCccch------hhhhhh
Confidence 34567854 468999999999999999887 3343 999999999999999999999999966 799999
Q ss_pred EccCCcc
Q 033172 91 VQPSLAK 97 (125)
Q Consensus 91 ~~~~~~~ 97 (125)
++..++.
T Consensus 71 ~rL~GG~ 77 (128)
T KOG0003|consen 71 LRLRGGI 77 (128)
T ss_pred HHHhcCC
Confidence 9998883
No 33
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=99.28 E-value=1.6e-11 Score=81.37 Aligned_cols=69 Identities=17% Similarity=0.133 Sum_probs=53.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecC-CCCccccCCCC-CCCcCCce
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE-NNKTVGQCKIP-YGEVPGGV 84 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~-D~~tL~~~~i~-~gd~~~~~ 84 (125)
++|.=+...|..+ .+++++++||++||++|+++ +.+| +++||| |.|+.|. |+++|++|++. +|
T Consensus 3 ~~~~~~~~~~~t~-~l~v~~~~TV~~lK~kI~~~-----~gip--~~~QrL-~~G~~L~dD~~tL~~ygi~~~g------ 67 (75)
T cd01799 3 VSVEDAQSHTVTI-WLTVRPDMTVAQLKDKVFLD-----YGFP--PAVQRW-VIGQRLARDQETLYSHGIRTNG------ 67 (75)
T ss_pred EEEeccccCCCeE-EEEECCCCcHHHHHHHHHHH-----HCcC--HHHEEE-EcCCeeCCCcCCHHHcCCCCCC------
Confidence 3444445555444 68999999999999999988 2333 899999 9999884 77999999999 55
Q ss_pred EEEEEE
Q 033172 85 IIMHVV 90 (125)
Q Consensus 85 ~tmhlv 90 (125)
.++|+-
T Consensus 68 ~~~~l~ 73 (75)
T cd01799 68 DSAFLY 73 (75)
T ss_pred CEEEEE
Confidence 577774
No 34
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=99.21 E-value=5.9e-11 Score=74.60 Aligned_cols=67 Identities=31% Similarity=0.480 Sum_probs=55.2
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEE
Q 033172 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (125)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv 90 (125)
++..+|..+ .+.+++++||.+||++|++.+. .| ++.|+|+|.|+.|+|+.+|++|++.++ ..+|+.
T Consensus 2 v~~~~~~~~-~~~~~~~~ti~~lK~~i~~~~~-----~~--~~~~~l~~~g~~l~d~~~l~~~~v~~~------~~i~v~ 67 (69)
T cd01769 2 VKTLTGKTF-ELEVSPDDTVAELKAKIAAKEG-----VP--PEQQRLIYAGKILKDDKTLSDYGIQDG------STLHLV 67 (69)
T ss_pred eEccCCCEE-EEEECCCChHHHHHHHHHHHHC-----cC--hHHEEEEECCcCCCCcCCHHHCCCCCC------CEEEEE
Confidence 344567555 6899999999999999999932 22 899999999999999999999999988 567765
Q ss_pred E
Q 033172 91 V 91 (125)
Q Consensus 91 ~ 91 (125)
.
T Consensus 68 ~ 68 (69)
T cd01769 68 L 68 (69)
T ss_pred E
Confidence 3
No 35
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=99.18 E-value=4.1e-11 Score=98.51 Aligned_cols=67 Identities=28% Similarity=0.447 Sum_probs=59.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~ 80 (125)
.|.||+..|..+ .+++.|++||.+||.+|+.. ++.. -| ++.|+|||+||+|.|+.|+.+|++++++|
T Consensus 2 ~lt~KtL~q~~F-~iev~Pe~tV~evK~kIet~--~g~d-yP--~~~QkLIy~GkiL~D~~tv~Eykv~E~~f 68 (340)
T KOG0011|consen 2 KLTVKTLKQQTF-TIEVKPEDTVVEVKKKIETE--KGPD-YP--AEQQKLIYSGKILKDETTVGEYKVKEKKF 68 (340)
T ss_pred eeEeeeccCcee-EeecCcchhHHHHHHHHHhc--cCCC-Cc--hhhheeeecceeccCCcchhhhccccCce
Confidence 588999999776 78999999999999999998 2222 23 99999999999999999999999999976
No 36
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=99.07 E-value=3.7e-10 Score=79.27 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=57.1
Q ss_pred EeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeec-CCCCccccCCCCCCCcCCceEEEEEE
Q 033172 12 RLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQCKIPYGEVPGGVIIMHVV 90 (125)
Q Consensus 12 ~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L-~D~~tL~~~~i~~gd~~~~~~tmhlv 90 (125)
|+.-|. ..++|++++||.+||.+|+..+- +| +.+|||+|.|+.| +|.+||++||+..+ ++++|.
T Consensus 11 r~~~~~--~~L~V~~~~TVg~LK~lImQ~f~-----V~--P~dQkL~~dG~~L~DDsrTLssyGv~sg------Svl~Ll 75 (107)
T cd01795 11 RKVRGE--KALLVSANQTLKELKIQIMHAFS-----VA--PFDQNLSIDGKILSDDCATLGTLGVIPE------SVILLK 75 (107)
T ss_pred ccCCCC--ceEEeCccccHHHHHHHHHHHhc-----CC--cccceeeecCceeccCCccHHhcCCCCC------CEEEEE
Confidence 344453 25799999999999999999932 22 8999999999999 57999999999998 788988
Q ss_pred EccCCc
Q 033172 91 VQPSLA 96 (125)
Q Consensus 91 ~~~~~~ 96 (125)
+..|..
T Consensus 76 ideP~~ 81 (107)
T cd01795 76 ADEPIA 81 (107)
T ss_pred ecCCcc
Confidence 865543
No 37
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.3e-10 Score=102.29 Aligned_cols=76 Identities=21% Similarity=0.401 Sum_probs=67.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
.+|++|+.|. .+..|.|+..+||.++|++|.++ +| .+-|||||.||.|.|++++++|++ +|
T Consensus 3 ~~v~vktld~-r~~t~~ig~q~ti~~~~d~~r~~~ni~---------s~~qr~i~~grvl~~~k~vq~~~v-dg------ 65 (1143)
T KOG4248|consen 3 PNVLVKTLDS-RTRTFIIGAQMTIKEFKDHIRASVNIP---------SEKQRLIYQGRVLQDDKKVQEYNV-DG------ 65 (1143)
T ss_pred cceeeeeccc-ceeEEEechHHHHHHHHHHHHHhcccc---------cccceeeecceeeccchhhhhccC-CC------
Confidence 4588999988 45689999999999999999999 66 999999999999999999999999 67
Q ss_pred EEEEEEEccCCccCC
Q 033172 85 IIMHVVVQPSLAKTK 99 (125)
Q Consensus 85 ~tmhlv~~~~~~~kk 99 (125)
-++|||-|++++.-.
T Consensus 66 k~~hlverppp~~~~ 80 (1143)
T KOG4248|consen 66 KVIHLVERPPPQTHL 80 (1143)
T ss_pred eEEEeeccCCCCccc
Confidence 589999998876543
No 38
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=99.01 E-value=1.6e-09 Score=69.88 Aligned_cols=69 Identities=33% Similarity=0.483 Sum_probs=58.6
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCC-ceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAV-TEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~-~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
++|+++..+|+.+ .+.+.+++++..|+++++++ .| + +.++|+|.|+.|++++|++++++.+|
T Consensus 1 I~i~v~~~~~~~~-~~~v~~~~~~~~l~~~~~~~~~i~---------~~~~~~l~fdG~~L~~~~T~~~~~ied~----- 65 (72)
T PF11976_consen 1 ITIKVRSQDGKEI-KFKVKPTTTVSKLIEKYCEKKGIP---------PEESIRLIFDGKRLDPNDTPEDLGIEDG----- 65 (72)
T ss_dssp EEEEEEETTSEEE-EEEEETTSCCHHHHHHHHHHHTTT---------T-TTEEEEETTEEE-TTSCHHHHT-STT-----
T ss_pred CEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHhhCCC---------ccceEEEEECCEEcCCCCCHHHCCCCCC-----
Confidence 5788888999654 78999999999999999998 44 6 99999999999999999999999999
Q ss_pred eEEEEEEE
Q 033172 84 VIIMHVVV 91 (125)
Q Consensus 84 ~~tmhlv~ 91 (125)
.++|+++
T Consensus 66 -d~Idv~I 72 (72)
T PF11976_consen 66 -DTIDVII 72 (72)
T ss_dssp -EEEEEE-
T ss_pred -CEEEEEC
Confidence 6788753
No 39
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=98.95 E-value=6.7e-09 Score=69.94 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=55.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE-EecCe-----ec-CCCCccccCCCCCCC
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSGK-----IL-ENNKTVGQCKIPYGE 79 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrL-I~~Gr-----~L-~D~~tL~~~~i~~gd 79 (125)
+.|.+.........+-.++++.||.+||++++... +.| ++.||| +|.|+ .| +|+++|++|++.+|
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~-----G~~--~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg- 73 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVV-----GTP--ASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDG- 73 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHH-----CCC--ccceEEEEEcCCCCeEeecCCCccEeeeccCCCC-
Confidence 34555443332333456999999999999998881 222 899999 58999 46 78999999999999
Q ss_pred cCCceEEEEEEEc
Q 033172 80 VPGGVIIMHVVVQ 92 (125)
Q Consensus 80 ~~~~~~tmhlv~~ 92 (125)
.+||++-.
T Consensus 74 -----~~IhVvD~ 81 (84)
T cd01789 74 -----CRIHVIDV 81 (84)
T ss_pred -----CEEEEEeC
Confidence 78998753
No 40
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=98.75 E-value=2.1e-08 Score=66.12 Aligned_cols=53 Identities=26% Similarity=0.328 Sum_probs=43.5
Q ss_pred CCcchHHHHHHHHHhhCCCCCccCCCCCceeEE--EecCeecCCCCccccCCCCCCCcCCceEEEEE
Q 033172 25 SSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKILENNKTVGQCKIPYGEVPGGVIIMHV 89 (125)
Q Consensus 25 ~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrL--I~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhl 89 (125)
+++.||.+||+.|++.++ .. ++++||| ++.|+.|.|+++|+++|+.+| +++|+
T Consensus 20 ~~~aTV~dlk~~i~~~~~----~~--~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g------~~lyv 74 (77)
T cd01801 20 SGDATIADLKKLIAKSSP----QL--TVNRQSLRLEPKGKSLKDDDTLVDLGVGAG------ATLYV 74 (77)
T ss_pred CCCccHHHHHHHHHHHcC----CC--CcceeEEEeCCCCcccCCcccHhhcCCCCC------CEEEE
Confidence 588999999999998732 11 1788888 699999999999999999988 56765
No 41
>PLN02560 enoyl-CoA reductase
Probab=98.68 E-value=6.5e-08 Score=79.24 Aligned_cols=70 Identities=19% Similarity=0.242 Sum_probs=54.7
Q ss_pred EEEEEeCCCCee--eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec---C----eecCCCCccccCCCCCC
Q 033172 8 DIKFRLYDGSDI--GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G----KILENNKTVGQCKIPYG 78 (125)
Q Consensus 8 ~l~~~~~~g~~~--~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~---G----r~L~D~~tL~~~~i~~g 78 (125)
+|.++..+|+.+ ..+++++++||++||++|+++.+ .. ++++|||++. | +.|+|+++|+++|+.+|
T Consensus 2 ~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~----~~--~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~g 75 (308)
T PLN02560 2 KVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKK----KY--YPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDG 75 (308)
T ss_pred EEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcC----CC--ChhheEEEEecCCCCcCccccCCCCCHHhcCCCCC
Confidence 355566778776 46899999999999999998722 00 1899999983 4 48999999999999988
Q ss_pred CcCCceEEEEE
Q 033172 79 EVPGGVIIMHV 89 (125)
Q Consensus 79 d~~~~~~tmhl 89 (125)
+++++
T Consensus 76 ------stLy~ 80 (308)
T PLN02560 76 ------GTVVF 80 (308)
T ss_pred ------ceEEE
Confidence 56665
No 42
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.62 E-value=5.4e-07 Score=55.65 Aligned_cols=70 Identities=29% Similarity=0.503 Sum_probs=58.0
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEE
Q 033172 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (125)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv 90 (125)
.+...|+.+ .+.+.+..+|..+|++|+.. +.+| ..+|+|.+.|+.|+|+.+|.+|+|..+ .++|++
T Consensus 4 ~~~~~gk~~-~~~~~~~~~i~~~k~~i~~~-----~~~~--~~~q~~~~~~~~l~d~~~l~~~~i~~~------~~~~l~ 69 (75)
T KOG0001|consen 4 VKTLDGKTI-TLEVSPSDTIEVVKAKIRDK-----EGIP--VDQQRLIFGGKPLEDGRTLADYNIQEG------STLHLV 69 (75)
T ss_pred EEecCCCEE-EEEecCCCHHHHHHHHHHhh-----cCCC--CeeEEEEECCEECcCCCcHHHhCCCCC------CEEEEE
Confidence 444667554 68999999999999999988 1222 899999999999999999999999988 688887
Q ss_pred EccC
Q 033172 91 VQPS 94 (125)
Q Consensus 91 ~~~~ 94 (125)
.+..
T Consensus 70 ~~~~ 73 (75)
T KOG0001|consen 70 LSLR 73 (75)
T ss_pred EecC
Confidence 7654
No 43
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=98.52 E-value=2.8e-07 Score=64.13 Aligned_cols=59 Identities=25% Similarity=0.479 Sum_probs=45.8
Q ss_pred EEEEeCCC-CeeeeEEeC--CcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccC
Q 033172 9 IKFRLYDG-SDIGPFRYS--SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (125)
Q Consensus 9 l~~~~~~g-~~~~~~~v~--~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~ 73 (125)
|.+|+.++ -|+ +++|+ .++||..||+.|.+..|++ .+-..+||||+||.|.|...|+..
T Consensus 3 l~IRFs~sipDl-~L~I~~~~~~Tv~~LK~lIR~~~p~~-----~s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 3 LTIRFSDSIPDL-PLDIPSPNTTTVAWLKQLIRERLPPE-----PSRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred EEEEECCCCCCc-eeecCCCCcccHHHHHHHHHhhcCCC-----CccccEEeeecCcccCccchhhhh
Confidence 44455553 343 67887 8999999999999998632 357899999999999999888744
No 44
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=98.47 E-value=5.9e-07 Score=64.40 Aligned_cols=78 Identities=18% Similarity=0.243 Sum_probs=56.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc-CCce
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGV 84 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~-~~~~ 84 (125)
++.+++|=..-. + -.+..+++||.+||++|+.-.. .| +++|||+..+.+|+|++||++||+..... +..+
T Consensus 2 dvFlmIrR~KTT-i-F~dakes~tVlelK~~iegI~k-----~p--p~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~p 72 (119)
T cd01788 2 DVFLMIRRHKTT-I-FTDAKESTTVYELKRIVEGILK-----RP--PEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAP 72 (119)
T ss_pred ceEEEEEecceE-E-EeecCCcccHHHHHHHHHHHhc-----CC--hhHheeecCceeecccccHHHcCccccccccCCC
Confidence 466677655442 2 3688999999999999998832 22 99999997778999999999999954321 2233
Q ss_pred EEEEEEEc
Q 033172 85 IIMHVVVQ 92 (125)
Q Consensus 85 ~tmhlv~~ 92 (125)
.++-|.+|
T Consensus 73 A~vgLa~r 80 (119)
T cd01788 73 ATVGLAFR 80 (119)
T ss_pred CeEEEEEe
Confidence 56666666
No 45
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=98.45 E-value=1.4e-06 Score=58.45 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=52.4
Q ss_pred EEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec----Ce----ecCCCCccccCCCCC
Q 033172 7 IDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS----GK----ILENNKTVGQCKIPY 77 (125)
Q Consensus 7 v~l~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~----Gr----~L~D~~tL~~~~i~~ 77 (125)
|.|.+.....+ ...+..++++.||.+||++|+..+ ++| ++.|||.+. |. ..+|.++|.+|++.+
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~-----Gi~--~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~d 74 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLT-----GIP--PSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKD 74 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHH-----TS---TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-ST
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHh-----CCC--cccEEEEEEecCCCccccccCCCccEeecCCCCC
Confidence 44555544332 245789999999999999999992 222 899999776 11 336899999999999
Q ss_pred CCcCCceEEEEEEE
Q 033172 78 GEVPGGVIIMHVVV 91 (125)
Q Consensus 78 gd~~~~~~tmhlv~ 91 (125)
| .++|++=
T Consensus 75 g------~~i~V~D 82 (87)
T PF14560_consen 75 G------MRIHVVD 82 (87)
T ss_dssp T------EEEEEEE
T ss_pred C------CEEEEEe
Confidence 9 7888853
No 46
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=98.24 E-value=6.7e-06 Score=47.71 Aligned_cols=65 Identities=25% Similarity=0.307 Sum_probs=52.6
Q ss_pred eCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEE
Q 033172 13 LYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (125)
Q Consensus 13 ~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~ 91 (125)
+.+|.. ..+.++++.|+.+||+.|.++++ .+++.++|++.|+.+++...+.++++..+ ..+++..
T Consensus 4 ~~~~~~-~~~~~~~~~tv~~l~~~i~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~i~~~~ 68 (69)
T cd00196 4 LNDGKT-VELLVPSGTTVADLKEKLAKKLG-------LPPEQQRLLVNGKILPDSLTLEDYGLQDG------DELVLVP 68 (69)
T ss_pred ecCCCE-EEEEcCCCCcHHHHHHHHHHHHC-------cChHHeEEEECCeECCCCCcHHHcCCCCC------CEEEEEe
Confidence 345644 46788999999999999999963 22899999999999999998888999888 4667653
No 47
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=2.5e-06 Score=70.88 Aligned_cols=72 Identities=24% Similarity=0.424 Sum_probs=57.5
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
+-|+|+-.+.+-..+++|+.+++|.+||+.++.+ .| ++++|+||+||.|.|+.|++.+.+...
T Consensus 3 ~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp---------~D~L~viFaGKeLs~~ttv~~cDL~qq------ 67 (446)
T KOG0006|consen 3 VLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVP---------ADQLRVIFAGKELSNDTTVQNCDLSQQ------ 67 (446)
T ss_pred EEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCC---------hhheEEEEeccccccCceeeccccccc------
Confidence 4566653333233578999999999999999998 55 999999999999999999999888765
Q ss_pred EEEEEE-Ecc
Q 033172 85 IIMHVV-VQP 93 (125)
Q Consensus 85 ~tmhlv-~~~ 93 (125)
+.+|++ +||
T Consensus 68 s~~hi~~lRP 77 (446)
T KOG0006|consen 68 SATHIMLLRP 77 (446)
T ss_pred chhhhhccCc
Confidence 577877 444
No 48
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=97.97 E-value=0.00015 Score=47.68 Aligned_cols=73 Identities=22% Similarity=0.310 Sum_probs=55.6
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecCCC--CccccCCCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILENN--KTVGQCKIPYGE 79 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI--~~Gr~L~D~--~tL~~~~i~~gd 79 (125)
++.++|+||+.+|+.+ .-.|.+++||.+|.+.|....... .....+|+ |-.|.|.+. .||+++|+..+
T Consensus 4 ~~~~~I~vRlpdG~~l-~~~F~~~~tl~~l~~~v~~~~~~~------~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~- 75 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRL-QRRFPKSDTLQDLYDFVESQLFSP------EESDFELITAFPRRELTDEDSKTLEEAGLLPS- 75 (82)
T ss_dssp SSEEEEEEEETTSTEE-EEEEETTSBHHHHHHHHHHHHHCT------TTSSEEEEESSSTEECCSTTTSBTCCCTTSSC-
T ss_pred CCEEEEEEECCCCCEE-EEEECCcchHHHHHHHHHHhcCCC------CCccEEEEeCCCCcCCCccccccHHHhcCCCC-
Confidence 6889999999999766 679999999999999999882200 12236775 556777543 69999998877
Q ss_pred cCCceEEEEE
Q 033172 80 VPGGVIIMHV 89 (125)
Q Consensus 80 ~~~~~~tmhl 89 (125)
.+++|
T Consensus 76 -----~~l~v 80 (82)
T PF00789_consen 76 -----ATLIV 80 (82)
T ss_dssp -----EEEEE
T ss_pred -----eEEEE
Confidence 67776
No 49
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.97 E-value=2e-05 Score=52.90 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=38.4
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec--C-eec--CCCCccccCCCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--G-KIL--ENNKTVGQCKIPYGE 79 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~--G-r~L--~D~~tL~~~~i~~gd 79 (125)
+.+-||||..+|. ..+++++++|+.+|+++|++.++ +| ...|.|... + ..| .++++|+++||+.||
T Consensus 3 ~~milRvrS~dG~--~Rie~~~~~t~~~L~~kI~~~l~-----~~--~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGd 73 (80)
T PF11543_consen 3 SSMILRVRSKDGM--KRIEVSPSSTLSDLKEKISEQLS-----IP--DSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGD 73 (80)
T ss_dssp ---EEEEE-SSEE--EEEEE-TTSBHHHHHHHHHHHS----------TTT---BSSGGGGGCSSS-TT-CCCCT---TT-
T ss_pred ccEEEEEECCCCC--EEEEcCCcccHHHHHHHHHHHcC-----CC--CcceEEEecCCCCcccccCCcCCHHHcCCCCcc
Confidence 4577899999994 35799999999999999999944 11 445555221 1 134 578999999999994
No 50
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.50 E-value=0.0011 Score=44.27 Aligned_cols=66 Identities=23% Similarity=0.316 Sum_probs=51.1
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeec-CCCCccccCCCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKIL-ENNKTVGQCKIPYG 78 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI--~~Gr~L-~D~~tL~~~~i~~g 78 (125)
..+|.||+.+|+.+ ...|..++||++|.+.|....|.. ......|. |=.|.| +++.||+|+|+...
T Consensus 4 ~t~iqiRlpdG~r~-~~rF~~~~tv~~l~~~v~~~~~~~------~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~s 72 (79)
T cd01770 4 TTSIQIRLADGKRL-VQKFNSSHRVSDVRDFIVNARPEF------AARPFTLMTAFPVKELSDESLTLKEANLLNA 72 (79)
T ss_pred eeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHhCCCC------CCCCEEEecCCCCcccCCCCCcHHHCCCcCc
Confidence 46899999999776 569999999999999999885511 12455665 556767 45999999999855
No 51
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.40 E-value=0.0016 Score=44.00 Aligned_cols=65 Identities=12% Similarity=0.289 Sum_probs=52.5
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecC--------CCCccccCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE--------NNKTVGQCK 74 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L~--------D~~tL~~~~ 74 (125)
+.++|.||+.+|+.+ .-.|..++||++|.+.|... + ..+...+|+++= |.+. .+.||+++|
T Consensus 3 ~~~~I~iRlp~G~Rl-~rrF~~~~tl~~l~~fv~~~-~-------~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaG 73 (85)
T cd01774 3 DTVKIVFKLPNGTRV-ERRFLFTQSLRVIHDFLFSL-K-------ETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAG 73 (85)
T ss_pred ceEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhC-C-------CCCCcEEEecCCCCccccccccccCcCCCCHHHcC
Confidence 578999999999776 56999999999999999654 2 125778888776 7775 377999999
Q ss_pred CCCC
Q 033172 75 IPYG 78 (125)
Q Consensus 75 i~~g 78 (125)
+...
T Consensus 74 L~~s 77 (85)
T cd01774 74 LSNS 77 (85)
T ss_pred CCCc
Confidence 9865
No 52
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=97.29 E-value=0.00075 Score=47.37 Aligned_cols=75 Identities=23% Similarity=0.291 Sum_probs=53.1
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecCCCCccccCCCCCCCc-CC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYGEV-PG 82 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L~D~~tL~~~~i~~gd~-~~ 82 (125)
++.+++|=... .+ -.+-+++.||-+||.+++.-.. .| ++.|||+-.. ..|+|.+||+++|+..... +.
T Consensus 2 ~~f~~VrR~kt-ti-f~da~es~tV~elK~~l~gi~~-----~P--vn~qrL~kmd~eqlL~D~ktL~d~gfts~~ak~q 72 (110)
T KOG4495|consen 2 DVFLRVRRHKT-TI-FTDAKESSTVFELKRKLEGILK-----RP--VNEQRLYKMDTEQLLDDGKTLGDCGFTSQTAKPQ 72 (110)
T ss_pred ceeeeeeecce-eE-EeecCccccHHHHHHHHHHHHh-----CC--CcchheeecCHHHHhhccchhhhccccccccccC
Confidence 35566655443 22 3588999999999999998732 23 9999998744 4789999999999875533 33
Q ss_pred ceEEEEE
Q 033172 83 GVIIMHV 89 (125)
Q Consensus 83 ~~~tmhl 89 (125)
.+.++-+
T Consensus 73 ~pA~vgL 79 (110)
T KOG4495|consen 73 APATVGL 79 (110)
T ss_pred CCceeee
Confidence 4455554
No 53
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=97.24 E-value=0.0032 Score=41.12 Aligned_cols=64 Identities=19% Similarity=0.336 Sum_probs=48.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe--cCeecC---CCCccccCCCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILE---NNKTVGQCKIPYG 78 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~--~Gr~L~---D~~tL~~~~i~~g 78 (125)
..+|+||+.+|+.+ ...|..++||.+|.+.|..... +....+|+. -.|.|. .+.||+++|+..+
T Consensus 2 ~t~i~iRlpdG~~~-~~~F~~~~tl~~l~~fv~~~~~--------~~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~~s 70 (77)
T cd01767 2 TTKIQIRLPDGKRL-EQRFNSTHKLSDVRDFVESNGP--------PAEPFTLMTSFPRRVLTDLDYELTLQEAGLVNE 70 (77)
T ss_pred cEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHcCC--------CCCCEEEEeCCCCccCCCCCccCcHHHcCCccc
Confidence 46899999999765 5799999999999999998743 134455653 346664 5899999999844
No 54
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=97.22 E-value=0.0049 Score=40.79 Aligned_cols=65 Identities=12% Similarity=0.196 Sum_probs=49.3
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecCC---CCccccCCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYG 78 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI--~~Gr~L~D---~~tL~~~~i~~g 78 (125)
...+|+||+.+|+.+ ...|+.++|+.+|.+.|...... ....+|+ |-.|.+.+ +.||+++|+...
T Consensus 3 ~~~~i~iRlp~G~~~-~~~F~~~~tl~~v~~fV~~~~~~--------~~~f~L~t~fPrk~~~~~d~~~TL~elgL~Ps 72 (79)
T cd01772 3 TETRIQIRLLDGTTL-KQTFKAREQLAAVRLFVELNTGN--------GGPFTLMTPFPRKVFTEDDMEKPLQELGLVPS 72 (79)
T ss_pred cEEEEEEECCCCCEE-EEEeCCCChHHHHHHHHHHcCCC--------CCCEEEEeCCCCeECCcccccCCHHHCCCCCc
Confidence 568899999999765 56999999999999999987431 1334554 34566743 689999998866
No 55
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.06 E-value=0.0053 Score=41.23 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=49.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec---C--eecCCCCccccCCCCCC
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPYG 78 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~---G--r~L~D~~tL~~~~i~~g 78 (125)
|+|+++-..+++. .+.++|..+|..+|++|...|- -..+|||-|. | +.|.+..+|++|||=.+
T Consensus 1 iqVtV~q~g~~dl-~l~vnPy~pI~k~K~kI~~~~~--------~~g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~ 68 (80)
T cd01811 1 IQVTVEQTGYSDW-ILRVNPYSPIRKIKEKIRRSRN--------CSGLQRLSFQEPGGERQLLSSRKSLADYGIFSK 68 (80)
T ss_pred CEEEeeecCCCce-EEEeCCcchHHHHHHHHHHhhC--------cccceEEEeecCCcccccccccccHhhhcceec
Confidence 3566666667676 5899999999999999999952 2579999885 2 26689999999999755
No 56
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=97.03 E-value=0.0082 Score=39.46 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=48.3
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ecCeecCC---CCccccCCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SSGKILEN---NKTVGQCKIPYG 78 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI--~~Gr~L~D---~~tL~~~~i~~g 78 (125)
...+|+||+.+|+.+ ...|.+++||.+|.+.|...... .....+|+ |-.|.|.+ +.||.++++..+
T Consensus 3 ~~~~I~iRlPdG~ri-~~~F~~~~tl~~v~~~v~~~~~~-------~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~ 73 (80)
T smart00166 3 DQCRLQIRLPDGSRL-VRRFPSSDTLRTVYEFVSAALTD-------GNDPFTLNSPFPRRTFTKDDYSKTLLELALLPS 73 (80)
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHcccC-------CCCCEEEEeCCCCcCCccccccCCHHHCCCCCc
Confidence 568899999999776 57999999999999999554220 12345554 44567753 579999998655
No 57
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.00058 Score=57.11 Aligned_cols=83 Identities=18% Similarity=0.193 Sum_probs=59.4
Q ss_pred CCeEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
|..+++-++..+. ++. .+..+-..||++||.+++.-.|.+ +-..+|||||+||.|.|...|+|.-++...
T Consensus 7 e~~v~lliks~Nq~y~dl-~i~~dl~wtv~~Lk~hls~VyPsk-----pl~~dqrliYsgkllld~qcl~d~lrkq~k-- 78 (391)
T KOG4583|consen 7 EFPVTLLIKSPNQSYKDL-SISLDLKWTVGDLKVHLSQVYPSK-----PLELDQRLIYSGKLLLDHQCLTDWLRKQVK-- 78 (391)
T ss_pred CcceEEEecCCCccccce-eeehhhhhhHHHHhhhHhhcCCCC-----CchhhHHHHhhccccccchhHHHHHHHHHH--
Confidence 4566666666655 232 456677899999999999998822 126899999999999999999987665442
Q ss_pred CceEEEEEEEccCCc
Q 033172 82 GGVIIMHVVVQPSLA 96 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~ 96 (125)
-++.|+|...+..
T Consensus 79 --~Hv~hlvcnsk~v 91 (391)
T KOG4583|consen 79 --EHVKHLVCNSKEV 91 (391)
T ss_pred --HHHHHHhcCCCCC
Confidence 1466776654433
No 58
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=96.69 E-value=0.0062 Score=40.07 Aligned_cols=72 Identities=15% Similarity=0.185 Sum_probs=46.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE-ecCeecCCCCccccCCCCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI-SSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI-~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.++|.+...+|.. ..+.++.+.+|++|...|.+.+..+... +......+|. -.|+.|+++.||+++||.+|+
T Consensus 2 ~~rVtv~~~~~~~-~Dl~lP~~vpv~~li~~l~~~~~~~~~~-~~~~~~~~L~~~~g~~L~~~~tL~~~gV~dGd 74 (79)
T PF08817_consen 2 LCRVTVDAGNGRQ-VDLALPADVPVAELIPELVELLGLPGDD-PPGHGQWVLARAGGRPLDPDQTLADAGVRDGD 74 (79)
T ss_dssp EEEEEEE-TT--E-EEEEEETTSBTTHHHHHHHHHS---S----TT-E-EEEG-GGTEEEETTSBCGGGT--TT-
T ss_pred EEEEEEEcCCCcE-EEEEcCCCCcHHHHHHHHHHHhCCccCC-CCCcceEEEEecCCcccCCcCcHhHcCCCCCC
Confidence 3567777655534 4789999999999999999984311111 1112257787 788899999999999999993
No 59
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.64 E-value=0.0049 Score=53.34 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=52.9
Q ss_pred eeeeEE-eCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEEcc
Q 033172 18 DIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQP 93 (125)
Q Consensus 18 ~~~~~~-v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~~~ 93 (125)
+.++.+ ++.++|+..+|+++.+. +.+| |++||+.+.|+.|.|+.-+...+|++| .++||+-.+
T Consensus 13 k~y~v~~l~~d~t~~vlKaqlf~L-----TgV~--PeRQKv~vKGg~a~dd~~~~al~iKpn------~~lmMmGt~ 76 (473)
T KOG1872|consen 13 KKYPVETLSTDETPSVLKAQLFAL-----TGVP--PERQKVMVKGGLAKDDVDWGALQIKPN------ETLMMMGTA 76 (473)
T ss_pred ccccceeccCCCchHHHHHHHHHh-----cCCC--ccceeEEEecccccccccccccccCCC------CEEEeeccc
Confidence 445666 89999999999999998 3333 999999999999999988888999998 688876543
No 60
>COG5417 Uncharacterized small protein [Function unknown]
Probab=96.55 E-value=0.021 Score=38.38 Aligned_cols=73 Identities=16% Similarity=0.325 Sum_probs=58.0
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~ 80 (125)
-+|++-|+..+|..+ .+.++.--+|..|-..+++.. +.+-.+.+-..+|..-.++.|.++..|.+|+|.+||.
T Consensus 5 ikVTvD~t~y~g~~y-DLrl~d~~pikklIdivwe~~--kis~~~reg~~Ikv~nKa~llsgd~kL~d~~IadGD~ 77 (81)
T COG5417 5 IKVTVDFTNYNGGTY-DLRLPDYLPIKKLIDIVWESL--KISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDI 77 (81)
T ss_pred EEEEEEeEecCCceE-EEeccccchHHHHHHHHHHHh--hccccccCCCEEEEeccceEecCCceEEeccccCCCE
Confidence 367888888888554 789999999998888887771 1222334568999999999999999999999999963
No 61
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.37 E-value=0.055 Score=37.95 Aligned_cols=64 Identities=14% Similarity=0.321 Sum_probs=52.1
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.|+||+.=.++ ....|.|--++....|...-.++ .+ .+++|++|.|+.+.+.+|-++++..+||
T Consensus 20 hi~LKV~gqd~-~~~~Fkikr~t~LkKLM~aYc~r~Gl~---------~~s~RFlFdG~rI~~~~TP~~L~mEd~D 85 (99)
T KOG1769|consen 20 HINLKVKGQDG-SVVVFKIKRHTPLKKLMKAYCERQGLS---------MNSLRFLFDGQRIRETHTPADLEMEDGD 85 (99)
T ss_pred eEEEEEecCCC-CEEEEEeecCChHHHHHHHHHHHcCCc---------cceEEEEECCcCcCCCCChhhhCCcCCc
Confidence 34455444444 44478999999999999888777 43 8999999999999999999999999995
No 62
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=96.00 E-value=0.098 Score=34.86 Aligned_cols=65 Identities=22% Similarity=0.307 Sum_probs=49.6
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEE--ecCeec---CCCCccccCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPY 77 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI--~~Gr~L---~D~~tL~~~~i~~ 77 (125)
+..++|.||+.+|+.+ .-.|..++++.+|...|..+ .+ ....+|+ |=-|.+ +.+.||.++|+..
T Consensus 2 ~~~~~i~iRlP~G~r~-~rrF~~t~~L~~l~~fv~~~~~~---------~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p 71 (80)
T cd01771 2 EPISKLRVRTPSGDFL-ERRFLGDTPLQVLLNFVASKGYP---------IDEYKLLSSWPRRDLTQLDPNFTLLELKLYP 71 (80)
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCC---------CCCEEEecCCCCCCCcCCCCCCcHHHcCCCC
Confidence 5678999999999765 56999999999999999876 32 3455664 334555 3367999999886
Q ss_pred C
Q 033172 78 G 78 (125)
Q Consensus 78 g 78 (125)
.
T Consensus 72 ~ 72 (80)
T cd01771 72 Q 72 (80)
T ss_pred C
Confidence 5
No 63
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=95.77 E-value=0.081 Score=40.09 Aligned_cols=82 Identities=17% Similarity=0.257 Sum_probs=52.9
Q ss_pred EEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCce-eEEEec-Ceec--CCCCccccCCCCCCC
Q 033172 7 IDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISS-GKIL--ENNKTVGQCKIPYGE 79 (125)
Q Consensus 7 v~l~~~~~~g~---~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~-qrLI~~-Gr~L--~D~~tL~~~~i~~gd 79 (125)
|+|=+...+|- .+..+.+++++||.+|+.+|.+..| . .... +-|.+. |+.| .++..++++.-...+
T Consensus 1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~-----~--~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~ 73 (162)
T PF13019_consen 1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLP-----I--PSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD 73 (162)
T ss_pred CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcC-----C--CccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence 35666678883 2346889999999999999999955 1 1333 345443 4454 455555555433332
Q ss_pred cCCceEEEEEEEccCCcc
Q 033172 80 VPGGVIIMHVVVQPSLAK 97 (125)
Q Consensus 80 ~~~~~~tmhlv~~~~~~~ 97 (125)
. ...++++.++..+++
T Consensus 74 ~--~~~~l~l~~rl~GGK 89 (162)
T PF13019_consen 74 S--DFITLRLSLRLRGGK 89 (162)
T ss_pred C--CceEEEEEEeccCCC
Confidence 1 347899999988764
No 64
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=95.72 E-value=0.028 Score=37.20 Aligned_cols=58 Identities=22% Similarity=0.370 Sum_probs=45.7
Q ss_pred eCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCC-CCCCCcCCceEEEEEEEcc
Q 033172 24 YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK-IPYGEVPGGVIIMHVVVQP 93 (125)
Q Consensus 24 v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~-i~~gd~~~~~~tmhlv~~~ 93 (125)
|+++++|.+|++.+... | +. +.-....|.|+|+.|+|...|++.. ++++ ..++|+..|
T Consensus 1 v~~~d~v~dvrq~L~~~-~---~t--~~~Tn~~L~~~g~~L~~~~el~~i~~~~~~------~~L~lve~p 59 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAES-P---ET--CYLTNFSLEHNGQRLDDFVELSEIEGIKDG------CVLELVEEP 59 (76)
T ss_pred CChhhHHHHHHHHHHhC-c---cc--cceeEEEEEECCCccCCchhhhhhhCCCCC------cEEEEEecC
Confidence 46889999999999998 2 11 2278889999999999999998864 6666 688887654
No 65
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=94.35 E-value=0.44 Score=32.15 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=47.9
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEE--ecCeec---CCCCccccCCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLI--SSGKIL---ENNKTVGQCKIPYG 78 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI--~~Gr~L---~D~~tL~~~~i~~g 78 (125)
..-+|.||+.+|+.+ .-.|..++++.+|...|... .+ ++..+|+ |=-|.+ +.+.||+++|+...
T Consensus 4 ~~t~i~vRlP~G~r~-~rrF~~~~~L~~v~~fv~~~g~~---------~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~ 73 (82)
T cd01773 4 PKARLMLRYPDGKRE-QIALPEQAKLLALVRHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCPQ 73 (82)
T ss_pred CeeEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHhcCCC---------CCCEEEecCCCCcccCCcccCCCHHHcCCCCC
Confidence 456899999999665 67999999999999999885 33 4555554 223444 34689999999866
No 66
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.35 Score=33.69 Aligned_cols=67 Identities=18% Similarity=0.334 Sum_probs=52.8
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
+.|+||+.=.+|..+ -|.+-.+++...|-+...++.- .+.+++|++|.|+-++-++|-+++++..+|
T Consensus 23 ~hinLkvv~qd~tel-fFkiKktT~f~klm~af~~rqG-------K~m~slRfL~dG~rI~~dqTP~dldmEdnd 89 (103)
T COG5227 23 KHINLKVVDQDGTEL-FFKIKKTTTFKKLMDAFSRRQG-------KNMSSLRFLFDGKRIDLDQTPGDLDMEDND 89 (103)
T ss_pred cccceEEecCCCCEE-EEEEeccchHHHHHHHHHHHhC-------cCcceeEEEEcceecCCCCChhhcCCccch
Confidence 345555544566554 5899999999998888887732 248999999999999999999999998874
No 67
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.97 E-value=0.078 Score=41.98 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=51.4
Q ss_pred EEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172 7 IDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 7 v~l~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
..++.++. +++++ -+.....+||.++|.++.+.= + .++-.||..|+|++|-|..-|++|+|..|
T Consensus 146 ~~lk~rlTtT~~d~-~lta~~~Dtv~eik~~L~Aae--g-----~D~~sQrif~Sg~~l~dkt~LeEc~iekg 210 (231)
T KOG0013|consen 146 PILKLRLTTTREDF-WLTAPHYDTVGEIKRALRAAE--G-----VDPLSQRIFFSGGVLVDKTDLEECKIEKG 210 (231)
T ss_pred cchHHHhhhhhhhe-eecccCcCcHHHHHHHHHHhh--c-----cchhhheeeccCCceeccccceeeeecCC
Confidence 44556665 66555 568888999999999999981 1 12678999999999999999999999977
No 68
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=90.56 E-value=1.2 Score=35.41 Aligned_cols=60 Identities=20% Similarity=0.283 Sum_probs=44.9
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE-EecC-----eec-CCCCccccCCCCCCCcCCceEEEEEEEcc
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL-ISSG-----KIL-ENNKTVGQCKIPYGEVPGGVIIMHVVVQP 93 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrL-I~~G-----r~L-~D~~tL~~~~i~~gd~~~~~~tmhlv~~~ 93 (125)
+..++++.||+++|.+++-.. ..+ ++.++| +|.| ..| +++..|..|+..+| -.+|++=..
T Consensus 16 Ekr~~~~ltl~q~K~KLe~~~-----G~~--~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg------~rihviD~~ 82 (234)
T KOG3206|consen 16 EKRLSNSLTLAQFKDKLELLT-----GTE--AESMELELYDGDDKKVSALSNEDADLGFYKVEDG------LRIHVIDSN 82 (234)
T ss_pred hhhcCCcCcHHHHHhhhhhhh-----CCC--ccceEEEEEcCCCceeeeccCCcccccccCCCCc------eEEEEEecC
Confidence 457889999999999999882 222 777877 5666 255 56888889988888 788876443
No 69
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=89.91 E-value=0.6 Score=39.74 Aligned_cols=66 Identities=20% Similarity=0.342 Sum_probs=48.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe--cCeec-CCCCccccCCCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKIL-ENNKTVGQCKIPYG 78 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~--~Gr~L-~D~~tL~~~~i~~g 78 (125)
+=+|.||+.+|+.+ ...|+..-||.+|+..|...=|.+ +...+-|++ =-|.| +|+.||+++++...
T Consensus 305 tTsIQIRLanG~Rl-V~~fN~sHTv~DIR~fI~~aRp~~------~~~~F~L~~~FPpk~l~D~sqTle~AgL~Ns 373 (380)
T KOG2086|consen 305 TTSIQIRLANGTRL-VLKFNHSHTVSDIREFIDTARPGD------SSTYFILMMAFPPKPLSDDSQTLEEAGLLNS 373 (380)
T ss_pred cceEEEEecCCcee-eeeccCcccHHHHHHHHHhcCCCC------cCCceeeeecCCCcccCCcchhHHhccchhh
Confidence 45788999999776 579999999999999999985522 122344432 23566 67999999999865
No 70
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins. MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.
Probab=89.68 E-value=2.2 Score=27.13 Aligned_cols=56 Identities=14% Similarity=0.284 Sum_probs=38.3
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 16 g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
|.....+++++..||.+|.+.+.+++|.. .. ......++..+|+.... +..+.+||
T Consensus 14 g~~~~~~~~~~~~tv~~ll~~l~~~~~~~-~~--~~~~~~~v~vNg~~v~~-----~~~l~~gD 69 (80)
T cd00754 14 GKDEEELELPEGATVGELLDALEARYPGL-LE--ELLARVRIAVNGEYVRL-----DTPLKDGD 69 (80)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHCchH-HH--hhhhcEEEEECCeEcCC-----CcccCCCC
Confidence 43334567888899999999999998721 00 01456778889988873 34566773
No 71
>TIGR01687 moaD_arch MoaD family protein, archaeal. Members of this family appear to be archaeal versions of MoaD, subunit 1 of molybdopterin converting factor. This model has been split from the bacterial/eukaryotic equivalog model TIGR01682 because the presence of two members of this family in a substantial number of archaeal species suggests that roles might not be interchangeable.
Probab=88.50 E-value=4.7 Score=26.34 Aligned_cols=60 Identities=15% Similarity=0.281 Sum_probs=37.5
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccC-C---CCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIV-P---KAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 16 g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~-P---~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
|.....++++ ..||.+|.+.+.+++|..+... . .-.+.+++..+|+..+++.. ..+++||
T Consensus 14 g~~~~~v~~~-~~tv~~l~~~l~~~~p~~~~~~l~~~~~~~~~~~v~vN~~~v~~~~~---~~l~dgd 77 (88)
T TIGR01687 14 GKKSEEIEIE-GKTVGDLLNELMARYPKEFSELFKEGLGLVPNVIILVNGRNVDWGLG---TELKDGD 77 (88)
T ss_pred CCceEEEEeC-CCCHHHHHHHHHHHCcHHHHHhCccCCcccccEEEEECCEecCccCC---CCCCCCC
Confidence 4333346666 8999999999999987422100 0 00245788889988765431 4567773
No 72
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.83 E-value=0.23 Score=32.60 Aligned_cols=55 Identities=20% Similarity=0.243 Sum_probs=41.1
Q ss_pred CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172 16 GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 16 g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
|+++ .+.-.+++||+++|..|+++.- .. ++.+.|=--+-+++|.-+|++|-|.+|
T Consensus 11 GKKV-RvKCn~dDtiGD~KKliaaQtG----T~---~~kivl~k~~~i~kd~I~L~dyeihdg 65 (73)
T KOG3493|consen 11 GKKV-RVKCNTDDTIGDLKKLIAAQTG----TR---PEKIVLKKWYTIFKDHITLSDYEIHDG 65 (73)
T ss_pred CceE-EEEeCCcccccCHHHHHHHhhC----CC---hhHhHHHhhhhhhhcccceeeEEeccC
Confidence 5444 4577899999999999999922 11 455555445558899999999999987
No 73
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=87.10 E-value=2.9 Score=30.39 Aligned_cols=57 Identities=19% Similarity=0.275 Sum_probs=39.6
Q ss_pred EEeCC-cchHHHHHHHHHhhCCCCCccCC---CCCceeEEEecC-----------------eec---CCCCccccCCCCC
Q 033172 22 FRYSS-ASTVDMLKQRIVSDWPKGKTIVP---KAVTEIKLISSG-----------------KIL---ENNKTVGQCKIPY 77 (125)
Q Consensus 22 ~~v~~-~~TV~~lK~~I~~~~p~~~~~~P---~~~~~qrLI~~G-----------------r~L---~D~~tL~~~~i~~ 77 (125)
-.++. ++||.+|++.+.+.++....-.| -.-+.+|+++.. -+| +++.||.++||..
T Consensus 20 ~~vdL~~~Tv~~l~~~v~~~I~t~~~~~Pfrn~~yDtlKIy~~AHg~Kt~nLvInle~De~~iL~~~~~~~tL~~~gv~n 99 (122)
T PF10209_consen 20 HNVDLKDTTVKDLKEQVKQDIKTRPGLPPFRNVKYDTLKIYTKAHGSKTNNLVINLEDDEDWILDVSDDDKTLKELGVEN 99 (122)
T ss_pred ecCCcccCcHHHHHHHHHHHHhcCCCCCCceeeecceEEEEecCCCCCcCCceeeccCCcceeeecCCCCCcHHHcCCCc
Confidence 35776 99999999999999554422111 135667776653 266 7788899999986
Q ss_pred C
Q 033172 78 G 78 (125)
Q Consensus 78 g 78 (125)
.
T Consensus 100 E 100 (122)
T PF10209_consen 100 E 100 (122)
T ss_pred c
Confidence 5
No 74
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=85.30 E-value=4.7 Score=25.75 Aligned_cols=46 Identities=13% Similarity=0.289 Sum_probs=34.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G 61 (125)
+.||++. |.++..+.++++.|-.+|+++|.+.++ ......+|=|..
T Consensus 2 ~~vK~~~--~~~~~~~~~~~~~s~~dL~~~i~~~~~-------~~~~~~~l~Y~D 47 (81)
T smart00666 2 VDVKLRY--GGETRRLSVPRDISFEDLRSKVAKRFG-------LDNQSFTLKYQD 47 (81)
T ss_pred ccEEEEE--CCEEEEEEECCCCCHHHHHHHHHHHhC-------CCCCCeEEEEEC
Confidence 3455555 447778999999999999999999976 113577887764
No 75
>PF06234 TmoB: Toluene-4-monooxygenase system protein B (TmoB); InterPro: IPR009355 This family consists of several Toluene-4-monooxygenase system protein B (TmoB) sequences. Pseudomonas mendocina KR1 metabolises toluene as a carbon source. The initial step of the pathway is hydroxylation of toluene to form p-cresol by a multicomponent toluene-4-monooxygenase (T4MO) system [].; PDB: 3N1Y_C 3RNG_C 3RNA_C 3RN9_C 3RNC_C 3N1X_C 3RNE_C 3RNF_C 3N1Z_C 3N20_C ....
Probab=84.80 E-value=8.5 Score=26.28 Aligned_cols=70 Identities=10% Similarity=0.188 Sum_probs=42.9
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecCCCCccccCCCCCC
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYG 78 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L~D~~tL~~~~i~~g 78 (125)
-|.-++...=-...+.++.++|+.++-++++..- -+.--.|.+-..+|+-++| +.+..+.|+++.||..-
T Consensus 5 Pl~~~F~gDFv~~Lv~VDt~dTmdqVA~k~A~Hs-VGrRV~~~pg~~lrVr~~g~~~~~p~~~tVaeagl~P~ 76 (85)
T PF06234_consen 5 PLTANFEGDFVLQLVPVDTEDTMDQVAAKVAHHS-VGRRVAPRPGAPLRVRRQGDTQPFPRSMTVAEAGLQPM 76 (85)
T ss_dssp EEEEEETT-SBEEEEEEETT-BHHHHHHHHHTTT-TTTSS---TTSEEEEEETTTSSEE-TT-BGGGHT--TT
T ss_pred ceeEeeccceEEEEEEeCCCCcHHHHHHHHhhhh-cceecCCCCCCEEEEEecCCCccCCCccEehhcCCCcc
Confidence 3444444332233578999999999999999871 0100111224588999999 99999999999999865
No 76
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer. ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....
Probab=84.58 E-value=4.3 Score=25.46 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=39.0
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
...++...||.+|.+.+..++|.-. ......+..+|+...+ . -.+..+++|
T Consensus 15 ~~~~~~~~tv~~ll~~l~~~~p~~~-----~~~~~~v~vN~~~v~~-~-~~~~~l~~g 65 (77)
T PF02597_consen 15 EIEVPEGSTVRDLLEALAERYPELA-----LRDRVAVAVNGEIVPD-D-GLDTPLKDG 65 (77)
T ss_dssp EEEESSTSBHHHHHHHHCHHTGGGH-----TTTTEEEEETTEEEGG-G-TTTSBEETT
T ss_pred EEecCCCCcHHHHHHHHHhhccccc-----cCccEEEEECCEEcCC-c-cCCcCcCCC
Confidence 4688899999999999999976211 1488999999999988 2 334555677
No 77
>PLN02799 Molybdopterin synthase sulfur carrier subunit
Probab=84.45 E-value=5.3 Score=25.83 Aligned_cols=56 Identities=14% Similarity=0.142 Sum_probs=35.2
Q ss_pred CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 15 DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 15 ~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.|.+...++++...||.+|++.+.++.|+ .... -....+..+|+...++ .-+.+||
T Consensus 16 ~g~~~~~~~~~~~~tv~~L~~~l~~~~p~-l~~~---~~~~~vavN~~~v~~~-----~~l~dgD 71 (82)
T PLN02799 16 TGVSDMTLELPAGSTTADCLAELVAKFPS-LEEV---RSCCVLALNEEYTTES-----AALKDGD 71 (82)
T ss_pred hCCCeEEEECCCCCcHHHHHHHHHHHChh-HHHH---hhCcEEEECCEEcCCC-----cCcCCCC
Confidence 34444467888899999999999888651 1000 1224567788876544 3455674
No 78
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=82.90 E-value=2.8 Score=34.26 Aligned_cols=59 Identities=20% Similarity=0.123 Sum_probs=42.5
Q ss_pred eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172 18 DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 18 ~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
.+...+.+..+|++++++.+.++=-+-.+..+ ...+|+--.|+.|-|+++|++++...|
T Consensus 13 ~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~--r~tlr~e~kgkpl~~~s~l~e~~~~s~ 71 (297)
T KOG1639|consen 13 RIKEKDLSGSETIDDLLKAISAKNLKITPYRI--RLTLRVEPKGKPLIDNSKLQEYGDGSG 71 (297)
T ss_pred eeeeecCCCCCcHHHHHHHHHHhhhccCccch--hheeeccCCCccccchhHHHHhccCCC
Confidence 34456778889999999888877110111222 566677778999999999999999877
No 79
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=82.26 E-value=10 Score=23.98 Aligned_cols=69 Identities=17% Similarity=0.188 Sum_probs=48.7
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe----cC--eecCCCCccccCCCCCCCcCC
Q 033172 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS----SG--KILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~----~G--r~L~D~~tL~~~~i~~gd~~~ 82 (125)
+++.||+ ...+++++++|+.+|=+.|.++ +. +.+..=|.| .| ..|+.+++|.+.....+
T Consensus 1 V~llD~~-~~~~~v~~~~t~~~l~~~v~~~l~l~--------e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~---- 67 (80)
T PF09379_consen 1 VRLLDGT-TKTFEVDPKTTGQDLLEQVCDKLGLK--------EKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNN---- 67 (80)
T ss_dssp EEESSEE-EEEEEEETTSBHHHHHHHHHHHHTTS--------SGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSS----
T ss_pred CCCcCCC-cEEEEEcCCCcHHHHHHHHHHHcCCC--------CccEEEEEEeecCCCcceeccCcccHHHHcCCCC----
Confidence 4578885 4579999999999999999999 32 255566666 23 47788999988866522
Q ss_pred ceEEEEEEEc
Q 033172 83 GVIIMHVVVQ 92 (125)
Q Consensus 83 ~~~tmhlv~~ 92 (125)
.+.++|+.++
T Consensus 68 ~~~~l~frvk 77 (80)
T PF09379_consen 68 PPFTLYFRVK 77 (80)
T ss_dssp SSEEEEEEES
T ss_pred CCEEEEEEEE
Confidence 2367777664
No 80
>smart00144 PI3K_rbd PI3-kinase family, Ras-binding domain. Certain members of the PI3K family possess Ras-binding domains in their N-termini. These regions show some similarity (although not highly significant similarity) to Ras-binding RA domains (unpublished observation).
Probab=82.21 E-value=9.5 Score=26.48 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=45.3
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-eeEEEecCe--ecCCCCccccCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLISSGK--ILENNKTVGQCK 74 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~-~qrLI~~Gr--~L~D~~tL~~~~ 74 (125)
..+-|.+...+......+.+++++|+.+|.+.+..+. .........++ +--|==.|| .|..+..|.++.
T Consensus 16 ~~i~v~i~~~~~~~~~t~~v~~~~~p~~li~~~l~k~-~~~~~~~~~~~~dyvLkV~G~~Eyl~~~~~L~~~~ 87 (108)
T smart00144 16 NKILIVVHLEKDQQTKTLKVNPNCTPDSVLAQAFTKM-LSLHDQVDPTSEDYILKVCGRDEYLLGDHPLGSFE 87 (108)
T ss_pred CeEEEEEEEccCceeEEEEECCCCCHHHHHHHHHHHH-HhccccccCCCCcEEEEecCcEEEEeCCeeeechH
Confidence 4566666666555556789999999999999888873 22111112233 555544566 777888888776
No 81
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal. The C-terminal Gly-Gly of this model is critical to function.
Probab=81.85 E-value=11 Score=24.20 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=38.2
Q ss_pred CCCeeeeEEeCCc-chHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 15 DGSDIGPFRYSSA-STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 15 ~g~~~~~~~v~~~-~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.|.....++++++ .||.+|++.+.++.|. ... ....+++..+|+...++ ..+++||
T Consensus 13 ~g~~~~~~~~~~~~~tv~~L~~~L~~~~p~-l~~---~~~~~~v~vn~~~v~~~-----~~l~dgD 69 (80)
T TIGR01682 13 AGTDEETLELPDESTTVGELKEHLAKEGPE-LAA---SRGQVMVAVNEEYVTDD-----ALLNEGD 69 (80)
T ss_pred hCCCeEEEECCCCCcCHHHHHHHHHHhCch-hhh---hccceEEEECCEEcCCC-----cCcCCCC
Confidence 3433345778876 8999999999999761 111 13567788899988754 4566773
No 82
>PRK08364 sulfur carrier protein ThiS; Provisional
Probab=81.59 E-value=6.4 Score=25.10 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=31.5
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+++++..||.+|-+.+. .+ .....+..+|+++.. +..+++||
T Consensus 17 ~~~~~~~~tv~~ll~~l~--~~---------~~~v~v~vNg~iv~~-----~~~l~~gD 59 (70)
T PRK08364 17 EIEWRKGMKVADILRAVG--FN---------TESAIAKVNGKVALE-----DDPVKDGD 59 (70)
T ss_pred EEEcCCCCcHHHHHHHcC--CC---------CccEEEEECCEECCC-----CcCcCCCC
Confidence 578889999999887763 33 566888899998854 34456774
No 83
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=78.38 E-value=10 Score=24.32 Aligned_cols=57 Identities=11% Similarity=0.141 Sum_probs=36.6
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
.++.. ..+.+.|++++.+|=+..-+++- -++++-.|.|+++.|+-+.++.-.|++.|
T Consensus 4 ~~~rr-~~vkvtp~~~l~~VL~eac~k~~-------l~~~~~~L~h~~k~ldlslp~R~snL~n~ 60 (65)
T PF11470_consen 4 YNFRR-FKVKVTPNTTLNQVLEEACKKFG-------LDPSSYDLKHNNKPLDLSLPFRLSNLPNN 60 (65)
T ss_dssp TTS-E-EEE---TTSBHHHHHHHHHHHTT---------GGG-EEEETTEEESSS-BHHHH---SS
T ss_pred cCCcE-EEEEECCCCCHHHHHHHHHHHcC-------CCccceEEEECCEEeccccceeecCCCCC
Confidence 44533 36789999999988777666622 12678899999999999999999999887
No 84
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=78.27 E-value=7.6 Score=24.76 Aligned_cols=47 Identities=15% Similarity=0.138 Sum_probs=34.0
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G 61 (125)
+.||+...++ ....+.++.+.|..+|+++|++.++ .....++|-|..
T Consensus 2 ~~vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~-------~~~~~~~l~Y~D 48 (84)
T PF00564_consen 2 VRVKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFG-------LLDEDFQLKYKD 48 (84)
T ss_dssp EEEEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHT-------TSTSSEEEEEEE
T ss_pred EEEEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhC-------CCCccEEEEeeC
Confidence 4455555554 3323889999999999999999977 114788888865
No 85
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=77.86 E-value=8.2 Score=25.73 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=26.8
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033172 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (125)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p 42 (125)
+++..-|.++..+.++++.+..+|+++|+++++
T Consensus 2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~ 34 (82)
T cd06407 2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFK 34 (82)
T ss_pred EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 445543447778999999999999999999965
No 86
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=77.13 E-value=6.9 Score=24.72 Aligned_cols=39 Identities=13% Similarity=0.107 Sum_probs=30.4
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccc
Q 033172 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVG 71 (125)
Q Consensus 20 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~ 71 (125)
...++..++|..+||.++... ++ -+||+|-..+++..|.
T Consensus 8 k~~~~~~~~tl~~lr~~~k~~-----------~D--I~I~NGF~~~~d~~L~ 46 (57)
T PF14453_consen 8 KEIETEENTTLFELRKESKPD-----------AD--IVILNGFPTKEDIELK 46 (57)
T ss_pred EEEEcCCCcCHHHHHHhhCCC-----------CC--EEEEcCcccCCccccC
Confidence 357899999999999887665 33 4699999888876665
No 87
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=72.35 E-value=9 Score=25.33 Aligned_cols=32 Identities=16% Similarity=0.383 Sum_probs=24.3
Q ss_pred EEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhh
Q 033172 9 IKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSD 40 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~ 40 (125)
|.+|+.+..+...+.|+ ..-||.+||..|.++
T Consensus 1 V~YKFkS~k~~~~i~fdG~~Isv~dLKr~I~~~ 33 (74)
T PF08783_consen 1 VHYKFKSQKDYDTITFDGTSISVFDLKREIIEK 33 (74)
T ss_dssp EEEEETT-SSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred CeEEecccCCccEEEECCCeeEHHHHHHHHHHH
Confidence 34666777777777885 568999999999887
No 88
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein. ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.
Probab=72.01 E-value=8.8 Score=23.84 Aligned_cols=47 Identities=13% Similarity=0.213 Sum_probs=33.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
++++++..||.+|.+.+.- + .+.+.+..+|+++..+. -++..+.+||
T Consensus 8 ~~~~~~~~tv~~ll~~l~~--~---------~~~i~V~vNg~~v~~~~-~~~~~L~~gD 54 (65)
T cd00565 8 PREVEEGATLAELLEELGL--D---------PRGVAVALNGEIVPRSE-WASTPLQDGD 54 (65)
T ss_pred EEEcCCCCCHHHHHHHcCC--C---------CCcEEEEECCEEcCHHH-cCceecCCCC
Confidence 5788889999999887753 3 67888999999885431 1224466774
No 89
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=71.64 E-value=26 Score=31.27 Aligned_cols=83 Identities=20% Similarity=0.366 Sum_probs=48.0
Q ss_pred CeEEEEEEeCC-CCeeeeEEeCCcchHHHHHHHHHhhCCCC--CccCCCCCceeEEEe-c---Ce-ecCCCC--------
Q 033172 5 ELIDIKFRLYD-GSDIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS-S---GK-ILENNK-------- 68 (125)
Q Consensus 5 ~~v~l~~~~~~-g~~~~~~~v~~~~TV~~lK~~I~~~~p~~--~~~~P~~~~~qrLI~-~---Gr-~L~D~~-------- 68 (125)
..+.|.....+ +..-.++.|=.-+||.++|++|-..+=++ ....| .++++-|-+ . |+ +|.|.+
T Consensus 188 ~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp-~~~d~dLEwr~~~~~~~iL~D~D~ts~~~~~ 266 (539)
T PF08337_consen 188 KTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRP-RADDVDLEWRQGRGGRLILQDEDSTSKVEGG 266 (539)
T ss_dssp -EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS---GGGEEEEEEETTSEEEEESSSSTTSEEETT
T ss_pred EEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCC-CccccceeeecCCCCcccccCCCCCcccCCC
Confidence 34555544432 22334677777889999999999982122 12222 367777633 2 33 676543
Q ss_pred -----ccccCCCCCCCcCCceEEEEEEEccC
Q 033172 69 -----TVGQCKIPYGEVPGGVIIMHVVVQPS 94 (125)
Q Consensus 69 -----tL~~~~i~~gd~~~~~~tmhlv~~~~ 94 (125)
||+.|+|++| ++|-++.+..
T Consensus 267 wkrLNTL~HY~V~dg------a~vaLv~k~~ 291 (539)
T PF08337_consen 267 WKRLNTLAHYKVPDG------ATVALVPKQH 291 (539)
T ss_dssp EEE--BHHHHT--TT------EEEEEEES--
T ss_pred ceEeccHhhcCCCCC------ceEEEeeccc
Confidence 6777999999 7888887753
No 90
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=71.42 E-value=19 Score=23.74 Aligned_cols=65 Identities=14% Similarity=0.309 Sum_probs=42.3
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhh-----CCCC-CccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172 14 YDGSDIGPFRYSSASTVDMLKQRIVSD-----WPKG-KTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (125)
Q Consensus 14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~-----~p~~-~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm 87 (125)
++|..+ .++-+++...-.+.++--++ -|.+ ||..- -+|..|+-++.++++|+..+ .++
T Consensus 3 VNGqPv-~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkD---------e~G~vlD~~kKveD~Gftng------vkL 66 (76)
T PF10790_consen 3 VNGQPV-QVEANVNAPLHPVRAKALEQSGNVGQPPENWELKD---------ESGQVLDVNKKVEDFGFTNG------VKL 66 (76)
T ss_pred eCCCce-eeecCCCCcchHHHHHHHhhccccCCCcccceeec---------cCCcEeeccchhhhcccccc------ceE
Confidence 456433 35666666666666665555 3322 43321 36888899999999999988 778
Q ss_pred EEEEccC
Q 033172 88 HVVVQPS 94 (125)
Q Consensus 88 hlv~~~~ 94 (125)
.+.+++-
T Consensus 67 FLsLKAG 73 (76)
T PF10790_consen 67 FLSLKAG 73 (76)
T ss_pred EEEeecc
Confidence 8876643
No 91
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=71.34 E-value=11 Score=27.46 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=42.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC------eecCCCCccccCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG------KILENNKTVGQCKIP 76 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G------r~L~D~~tL~~~~i~ 76 (125)
.+.+++.+.+|+.. .+.+++++||.+|-+.|..+.- + ......-|.+.. +.|+...+|.+....
T Consensus 3 ~~~~~V~l~dg~~~-~~~~~~~~t~~ev~~~v~~~~~-----l-~~~~~F~L~~~~~~~~~~~~l~~~~~l~~~~~~ 72 (207)
T smart00295 3 PRVLKVYLLDGTTL-EFEVDSSTTAEELLETVCRKLG-----I-RESEYFGLQFEDPDEDLSHWLDPAKTLLDQDVK 72 (207)
T ss_pred cEEEEEEecCCCEE-EEEECCCCCHHHHHHHHHHHhC-----C-CccceeEEEEEcCCCCcCeeCCCccCHHHhcCC
Confidence 46789999999654 7899999999999999999921 1 013444443321 356656666655443
No 92
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=70.85 E-value=1.4 Score=36.67 Aligned_cols=48 Identities=27% Similarity=0.397 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHhh-CCCC----CccCCCCCceeE-----EEecCeecCCCCccccCCCC
Q 033172 27 ASTVDMLKQRIVSD-WPKG----KTIVPKAVTEIK-----LISSGKILENNKTVGQCKIP 76 (125)
Q Consensus 27 ~~TV~~lK~~I~~~-~p~~----~~~~P~~~~~qr-----LI~~Gr~L~D~~tL~~~~i~ 76 (125)
++||.++|+.++++ .+.+ .+.+| .+.+| |+|+-|.+.|++||.+..-.
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp--~dKik~~~~~lL~~kkPv~~~ktl~e~l~~ 160 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVP--LDKIKNFRCRLLYKKKPVGDSKTLAEVLAD 160 (309)
T ss_dssp ------------------------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCC--HHHhhhhhhhheecCccCCCcCcHHHHHhc
Confidence 69999999999996 3322 34455 78888 99999999999999886533
No 93
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=70.60 E-value=18 Score=24.33 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=29.3
Q ss_pred eeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCe
Q 033172 19 IGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK 62 (125)
Q Consensus 19 ~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr 62 (125)
+..+.++++-+..+|+++|.++ .| +++++|-|.-.
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~---------~e~i~LsYkde 48 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELP---------AEHITLSYKSE 48 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCC---------chhcEEEeccC
Confidence 3468999999999999999999 54 78888888654
No 94
>PRK06437 hypothetical protein; Provisional
Probab=68.77 E-value=17 Score=23.07 Aligned_cols=50 Identities=12% Similarity=0.083 Sum_probs=34.6
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
++|..-..++++...||.+|=+.+. ++ +..+-+..+|+++. .+..+++||
T Consensus 7 v~g~~~~~~~i~~~~tv~dLL~~Lg--i~---------~~~vaV~vNg~iv~-----~~~~L~dgD 56 (67)
T PRK06437 7 VKGHINKTIEIDHELTVNDIIKDLG--LD---------EEEYVVIVNGSPVL-----EDHNVKKED 56 (67)
T ss_pred ecCCcceEEEcCCCCcHHHHHHHcC--CC---------CccEEEEECCEECC-----CceEcCCCC
Confidence 3352324678888999988765542 44 68888999999997 345566775
No 95
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=66.88 E-value=14 Score=23.28 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=25.4
Q ss_pred EEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhhCC
Q 033172 8 DIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWP 42 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~~p 42 (125)
.||++..++ +..+.++ .+.|..+|+++|.+.++
T Consensus 2 ~vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~ 35 (81)
T cd05992 2 RVKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFG 35 (81)
T ss_pred cEEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhC
Confidence 355555543 4567888 99999999999999977
No 96
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=66.72 E-value=12 Score=25.41 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=28.0
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p 42 (125)
.||+-.+| .+.-+.+.|+.++.+|++.|++++-
T Consensus 3 FK~~~~~G-rvhRf~~~~s~~~~~L~~~I~~Rl~ 35 (86)
T cd06409 3 FKFKDPKG-RVHRFRLRPSESLEELRTLISQRLG 35 (86)
T ss_pred EEeeCCCC-CEEEEEecCCCCHHHHHHHHHHHhC
Confidence 57777888 5557899999999999999999954
No 97
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=65.64 E-value=11 Score=25.73 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=42.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CC--CCCccCCCCCceeEEEecCeecCCCCccccC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WP--KGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p--~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~ 73 (125)
..-|+|-+.||+. ..+.|++++|+.++-+.++.+ .. .+|.. .+..=-++--|.++|-+-|-+.
T Consensus 2 k~vvkv~~~Dg~s-K~l~V~~~~Ta~dV~~~L~~K~h~~~~~~W~L----vE~~P~l~lER~~EDHE~vvdv 68 (85)
T cd01787 2 KQVVKVYSEDGAS-KSLEVDERMTARDVCQLLVDKNHCQDDSSWTL----VEHLPHLQLERLFEDHELVVEV 68 (85)
T ss_pred ceEEEEEecCCCe-eEEEEcCCCcHHHHHHHHHHHhCCCCCCCeEE----EEecchhhhhhhccchHHHHHH
Confidence 3567888889955 478999999999999999998 21 12321 1222234556788887766553
No 98
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=63.41 E-value=30 Score=23.74 Aligned_cols=69 Identities=10% Similarity=0.121 Sum_probs=40.1
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEEccCCccCC
Q 033172 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLAKTK 99 (125)
Q Consensus 20 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~~~~~~~kk 99 (125)
....++=.+.+..||..++.+.- .+-+.=.+......|+++++|-+-+++-. +.+.+.+-+++.++.++
T Consensus 5 I~q~mDI~epl~~Lk~lLe~Rl~-------~~L~~~~f~LQD~~L~~~k~L~dQcVqge----GlVQlnvQi~s~~~~~r 73 (88)
T PF11620_consen 5 IMQHMDIREPLSTLKKLLERRLG-------ISLSDYEFWLQDIQLEPHKSLVDQCVQGE----GLVQLNVQIKSNQGEPR 73 (88)
T ss_dssp EEEEEESSSBGGGHHHHSHHHH--------S--SS-EEEETTEE--TTSBTTTSS--------SEEEEEEEEE--TT--E
T ss_pred EEEEEecCCcHHHHHHHHHHhhC-------CCcCCCeEEeccceecCCccHHHhhcccc----CEEEEEEEEEecCCCcc
Confidence 35677778889999999999833 11455556667778999999999988744 34566665666555443
No 99
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=57.76 E-value=46 Score=23.93 Aligned_cols=49 Identities=10% Similarity=0.168 Sum_probs=36.7
Q ss_pred CeEEEEEEeCCCCee---eeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCe
Q 033172 5 ELIDIKFRLYDGSDI---GPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK 62 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~---~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr 62 (125)
.+|.|+||-.++..+ ..+.|+++.|++.+-..|... ++ ++++-++|=..
T Consensus 29 ~kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~---------as~slflYVN~ 82 (116)
T KOG3439|consen 29 RKVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQ---------ASDSLFLYVNN 82 (116)
T ss_pred ceEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCc---------ccCeEEEEEcC
Confidence 678899988766332 248999999999999999888 44 66666666544
No 100
>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.
Probab=57.57 E-value=33 Score=23.09 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=24.6
Q ss_pred EEEeCCCCeeeeEEeCC--cchHHHHHHHHHhhCC
Q 033172 10 KFRLYDGSDIGPFRYSS--ASTVDMLKQRIVSDWP 42 (125)
Q Consensus 10 ~~~~~~g~~~~~~~v~~--~~TV~~lK~~I~~~~p 42 (125)
+++..-+.++..+.+++ +.+-.+|++.|+..+-
T Consensus 2 ~vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~ 36 (81)
T cd06396 2 NLKVTYNGESQSFLVSDSENTTWASVEAMVKVSFG 36 (81)
T ss_pred EEEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhC
Confidence 44443333566789999 7799999999999954
No 101
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=56.43 E-value=27 Score=21.48 Aligned_cols=30 Identities=33% Similarity=0.219 Sum_probs=24.5
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhC
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDW 41 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~ 41 (125)
|++.+.+|+ ..+++...|+.++-+.|....
T Consensus 1 I~v~lpdG~---~~~~~~g~T~~d~A~~I~~~l 30 (60)
T PF02824_consen 1 IRVYLPDGS---IKELPEGSTVLDVAYSIHSSL 30 (60)
T ss_dssp EEEEETTSC---EEEEETTBBHHHHHHHHSHHH
T ss_pred CEEECCCCC---eeeCCCCCCHHHHHHHHCHHH
Confidence 466679993 457999999999999998874
No 102
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=54.85 E-value=72 Score=27.58 Aligned_cols=79 Identities=10% Similarity=0.081 Sum_probs=51.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe-cCeecCCCCccccCCCCCCCcCCceE
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-SGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~-~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
.+|.+.-.+ ....+-++.+..|.++--.|.+...++... +.....-.|-- .|..|+-+.||.+.++.+| .
T Consensus 3 ~RVtV~~~~--~~~DlaLPa~~PvaellP~ll~~~~~~~~~-~~~~~~w~L~r~gG~pL~~~~sL~~~gV~DG------~ 73 (452)
T TIGR02958 3 CRVTVLAGR--RAVDVALPADVPVAELIPDLVDLLDDRGAA-ELGAVRWALARAGGSPLDPDASLAEAGVRDG------E 73 (452)
T ss_pred EEEEEeeCC--eeeeeecCCCCcHHHHHHHHHHHhCccccc-CCCCcceEEecCCCCCCCCCCCHHHcCCCCC------C
Confidence 344554333 334678899999999988888874322100 01123334432 5669999999999999999 5
Q ss_pred EEEEEEccC
Q 033172 86 IMHVVVQPS 94 (125)
Q Consensus 86 tmhlv~~~~ 94 (125)
++|+..+..
T Consensus 74 ~L~L~p~~~ 82 (452)
T TIGR02958 74 LLVLVPASA 82 (452)
T ss_pred eEEEeeCCC
Confidence 788876433
No 103
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=54.79 E-value=16 Score=27.24 Aligned_cols=67 Identities=24% Similarity=0.378 Sum_probs=39.7
Q ss_pred CcchHHHHHHHHHhhCCC----CCc----c------CC-CCCceeEEEecCeec-CCCCccccCCCCCCCcCCceEEEEE
Q 033172 26 SASTVDMLKQRIVSDWPK----GKT----I------VP-KAVTEIKLISSGKIL-ENNKTVGQCKIPYGEVPGGVIIMHV 89 (125)
Q Consensus 26 ~~~TV~~lK~~I~~~~p~----~~~----~------~P-~~~~~qrLI~~Gr~L-~D~~tL~~~~i~~gd~~~~~~tmhl 89 (125)
-++|..+|-..|.+.-|. ++. . .| .-+.++=-.++|+-+ +|++||+++++.-||+ +.+
T Consensus 60 ~datL~ELtsLvkevnpeaR~kgt~f~fa~Vf~d~~~~~y~~RevG~t~~g~Kg~ddnktL~~~kf~iGD~------lDV 133 (151)
T KOG3391|consen 60 MDATLRELTSLVKEVNPEARKKGTSFDFAVVFPDKKSPRYIVREVGTTCLGRKGIDDNKTLQQTKFEIGDY------LDV 133 (151)
T ss_pred hhhhHHHHHHHHHHcCHHHhccCceEEEEEEeccCCCCCceeeeecccccCcccCCccchhhhCCccccce------EEE
Confidence 357888888888776332 100 0 00 012333344557755 8999999999999975 444
Q ss_pred EEccCCccC
Q 033172 90 VVQPSLAKT 98 (125)
Q Consensus 90 v~~~~~~~k 98 (125)
.+.++.-.+
T Consensus 134 aI~~p~~~~ 142 (151)
T KOG3391|consen 134 AITPPNRRP 142 (151)
T ss_pred EecCcccCC
Confidence 444444333
No 104
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=53.03 E-value=19 Score=25.25 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=18.9
Q ss_pred EEEecCeecCCCCccccCCCCCCC
Q 033172 56 KLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 56 rLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.|-|+||.|..+++|++| +..++
T Consensus 3 ~LW~aGK~l~~~k~l~dy-~GkNE 25 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDY-IGKNE 25 (98)
T ss_pred eEEeccccccCCCcHHHh-cCCCc
Confidence 477999999999999999 55443
No 105
>KOG4147 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.68 E-value=78 Score=22.85 Aligned_cols=75 Identities=15% Similarity=0.152 Sum_probs=42.4
Q ss_pred CCeEEEEEEeC----CCCeeeeEEeCC-cchHHHHHHHHHhhCCCCCccCC---CCCceeEEEec---------------
Q 033172 4 EELIDIKFRLY----DGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVP---KAVTEIKLISS--------------- 60 (125)
Q Consensus 4 ~~~v~l~~~~~----~g~~~~~~~v~~-~~TV~~lK~~I~~~~p~~~~~~P---~~~~~qrLI~~--------------- 60 (125)
|..|.||+.-. +=+++.-.+++- +.||.+++..|.+++|-+....| -.-+.+|+++.
T Consensus 5 ~~tiTvRvIrsFeyRn~KnvV~Hd~dLad~Tvk~f~~~~~~~Iq~~~sl~pfRn~kfDtLKIy~~Ah~sKT~nLvinldh 84 (127)
T KOG4147|consen 5 EVTITVRVIRSFEYRNFKNVVYHDVDLADQTVKEFIVFLKQDIQLRTSLPPFRNYKFDTLKIYHQAHKSKTNNLVINLDH 84 (127)
T ss_pred ccEEEEEEEeccccccccceeEeccchhHhhHHHHHHHHHHhcccCCCCCccccccccceeeehhhhhcccceEEEeccC
Confidence 56666665432 122332345665 88999999888888664422111 01233343332
Q ss_pred -Ce-ecC-CCCccccCCCCCC
Q 033172 61 -GK-ILE-NNKTVGQCKIPYG 78 (125)
Q Consensus 61 -Gr-~L~-D~~tL~~~~i~~g 78 (125)
.+ .|+ +++||..|||...
T Consensus 85 Dd~w~L~d~~ktL~~~GIenE 105 (127)
T KOG4147|consen 85 DDRWLLKDEDKTLKAAGIENE 105 (127)
T ss_pred CcceeecCccchHHHhccCcc
Confidence 23 444 6789999999754
No 106
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=49.41 E-value=41 Score=28.77 Aligned_cols=53 Identities=15% Similarity=0.129 Sum_probs=43.2
Q ss_pred eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCC--CCccccCCCCCCC
Q 033172 18 DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILEN--NKTVGQCKIPYGE 79 (125)
Q Consensus 18 ~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D--~~tL~~~~i~~gd 79 (125)
...++.+..+.....++..++.. ++ .+..-|||+++.|.+ ..+|.++|+..+|
T Consensus 13 ~~~~i~v~~dg~L~nl~aL~~~d~g~~---------~~~~~li~n~~~l~s~~s~~l~Q~g~~~~d 69 (380)
T KOG0012|consen 13 KKFPIPVTTDGELNNLAALCWKDTGIV---------YDPSDLIYNPRPLVSNESQGLTQIGLKDGD 69 (380)
T ss_pred eeeccccccccchhhHHHHHHHHhCcc---------cchhhcccCCCccccchhhhhhhcccccce
Confidence 33467888888889999998888 44 788889999999954 5788899999884
No 107
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=48.65 E-value=39 Score=29.71 Aligned_cols=68 Identities=18% Similarity=0.255 Sum_probs=45.3
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeec--C-CCCccccCCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL--E-NNKTVGQCKIPYG 78 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L--~-D~~tL~~~~i~~g 78 (125)
+.++|.|||.+|+.+. -.|+.+.-..++|+.+...---+... =++---|=-|.. + .++||.++++...
T Consensus 313 d~~rLqiRLPdGssft-e~Fps~~vL~~vr~yvrq~~~i~~g~-----f~LatpyPRReft~eDy~KtllEl~L~ps 383 (506)
T KOG2507|consen 313 DDVRLQIRLPDGSSFT-EKFPSTSVLRMVRDYVRQNQTIGLGA-----FDLATPYPRREFTDEDYDKTLLELRLFPS 383 (506)
T ss_pred ceeEEEEecCCccchh-hcCCcchHHHHHHHHHHhcccccccc-----eeeccccccccccchhhhhhHHHhccCCc
Confidence 7899999999998774 48888888889999988661101110 011112444544 2 3789999998865
No 108
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=47.71 E-value=1.2e+02 Score=23.38 Aligned_cols=50 Identities=16% Similarity=0.203 Sum_probs=30.1
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE--EecCee---cCCCCccccC
Q 033172 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGKI---LENNKTVGQC 73 (125)
Q Consensus 20 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrL--I~~Gr~---L~D~~tL~~~ 73 (125)
..+.++.+.||.+|-+.++.+..- ...+...+|| +++||+ +..+.+|++.
T Consensus 36 ~~~~vpk~~tV~Dll~~l~~k~~~----~~~~~~~lrl~ev~~~ki~~~~~~d~~i~~l 90 (213)
T PF14533_consen 36 YELLVPKTGTVSDLLEELQKKVGF----SEEGTGKLRLWEVSNHKIYKILSEDEPISSL 90 (213)
T ss_dssp EEE--BTT-BHHHHHHHHHTT--------TT----EEEEEEETTEEEEEE-TTSBGGGS
T ss_pred EEEEECCCCCHHHHHHHHHHHcCC----CcCCcCcEEEEEeECCEEEeecCCCCchhhc
Confidence 367889999999999999999431 1112567777 778885 5678888766
No 109
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=47.36 E-value=90 Score=21.36 Aligned_cols=35 Identities=11% Similarity=0.119 Sum_probs=26.6
Q ss_pred EEEEE-eCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033172 8 DIKFR-LYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (125)
Q Consensus 8 ~l~~~-~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p 42 (125)
+|.+- +.+|-....+.+.|.+|+++|-+.+++++.
T Consensus 3 ~Va~q~~~sgct~KTL~V~P~~tt~~vc~lcA~Kf~ 38 (87)
T cd01776 3 RVAFQDVNSGCTGKTLLVRPYITTEDVCQLCAEKFK 38 (87)
T ss_pred eEEeecCCCCceeeeeecCCCCcHHHHHHHHHHHhc
Confidence 34443 345655567899999999999999999954
No 110
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=46.69 E-value=23 Score=23.56 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=17.6
Q ss_pred eEEeCCcchHHHHHHHHHhh
Q 033172 21 PFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~ 40 (125)
+++++.++|+.++|+.++++
T Consensus 3 ~l~~~~~~Tl~~iK~~lw~~ 22 (78)
T PF02192_consen 3 PLRVSRDATLSEIKEELWEE 22 (78)
T ss_dssp EEEEETT-BHHHHHHHHHHH
T ss_pred EEEccCcCcHHHHHHHHHHH
Confidence 67899999999999999998
No 111
>PF07491 PPI_Ypi1: Protein phosphatase inhibitor ; InterPro: IPR011107 These proteins include Ypi1, a novel Saccharomyces cerevisiae type 1 protein phosphatase inhibitor [] and ppp1r11/hcgv (O60927 from SWISSPROT), annotated as having protein phosphatase inhibitor activity [].
Probab=45.40 E-value=20 Score=22.92 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=7.2
Q ss_pred CCCCcEEEe
Q 033172 106 GCFLASCSL 114 (125)
Q Consensus 106 ~~~~c~C~i 114 (125)
+++.|||..
T Consensus 34 kkSK~CCIy 42 (60)
T PF07491_consen 34 KKSKCCCIY 42 (60)
T ss_pred ccCceeeee
Confidence 788999864
No 112
>PF04233 Phage_Mu_F: Phage Mu protein F like protein; InterPro: IPR006528 This domain is found exclusively in phage-related proteins, internally or toward the C terminus. Some of these proteins have been identified as being involved in phage head morphogenesis [, ].
Probab=45.03 E-value=12 Score=24.97 Aligned_cols=12 Identities=8% Similarity=0.141 Sum_probs=10.1
Q ss_pred CCCCCCcEEEec
Q 033172 104 KGGCFLASCSLF 115 (125)
Q Consensus 104 ~~~~~~c~C~i~ 115 (125)
+....+|+|++|
T Consensus 101 pp~h~nCRC~~i 112 (112)
T PF04233_consen 101 PPEHPNCRCTVI 112 (112)
T ss_pred CCCCCCCeeeeC
Confidence 458999999986
No 113
>PF02505 MCR_D: Methyl-coenzyme M reductase operon protein D; InterPro: IPR003901 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein D.; GO: 0015948 methanogenesis
Probab=44.84 E-value=54 Score=24.68 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=36.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~-~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~ 73 (125)
.++|++ .-| .+ -++++. .+.+..+++...+.+|=+ -+ |+-|+++....|++||
T Consensus 67 ~veL~V--~vG-ri-~lele~~~~~ie~I~~iCee~lpf~-------y~----i~~G~f~r~~~TvtDY 120 (153)
T PF02505_consen 67 EVELTV--KVG-RI-ILELEDEEDVIEKIREICEEVLPFG-------YD----IKEGKFIRTKPTVTDY 120 (153)
T ss_pred EEEEEE--EEe-EE-EEEecCcHHHHHHHHHHHHHhCCCc-------eE----eeeeEEeccCCchhhh
Confidence 344444 445 23 367777 788888988888887611 22 4579999999999996
No 114
>TIGR01683 thiS thiamine biosynthesis protein ThiS. This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.
Probab=43.71 E-value=76 Score=19.45 Aligned_cols=51 Identities=14% Similarity=0.253 Sum_probs=34.3
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+| .+++++...||.+|.+.+.- + ++...+..+|+++..++ -.++.+++||
T Consensus 3 iNg---~~~~~~~~~tv~~ll~~l~~--~---------~~~v~v~vN~~iv~~~~-~~~~~L~~gD 53 (64)
T TIGR01683 3 VNG---EPVEVEDGLTLAALLESLGL--D---------PRRVAVAVNGEIVPRSE-WDDTILKEGD 53 (64)
T ss_pred ECC---eEEEcCCCCcHHHHHHHcCC--C---------CCeEEEEECCEEcCHHH-cCceecCCCC
Confidence 456 35688888999999877643 3 57788889999884221 1234567775
No 115
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=43.15 E-value=30 Score=29.38 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=44.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC---eec--CCCCccccCCCCCC
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KIL--ENNKTVGQCKIPYG 78 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G---r~L--~D~~tL~~~~i~~g 78 (125)
+|.+|+.+|... -..|-+.++|..|=..+..+.. .. .-...+|+++- |-| ..+.|+.++||.+.
T Consensus 279 ~i~vR~pdG~R~-qrkf~~sepv~ll~~~~~s~~d----g~--~k~~FkLv~a~P~~k~l~~~~daT~~eaGL~nS 347 (356)
T KOG1364|consen 279 SIQVRFPDGRRK-QRKFLKSEPVQLLWSFCYSHMD----GS--DKKRFKLVQAIPASKTLDYGADATFKEAGLANS 347 (356)
T ss_pred EEEEecCCccHH-HHhhccccHHHHHHHHHHHhhc----cc--ccccceeeecccchhhhhccccchHHHhccCcc
Confidence 488889999654 3466777777766666655521 11 16778888887 555 45899999999865
No 116
>PRK11130 moaD molybdopterin synthase small subunit; Provisional
Probab=43.03 E-value=89 Score=20.07 Aligned_cols=51 Identities=10% Similarity=0.175 Sum_probs=28.9
Q ss_pred EEeCC-cchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 22 FRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 22 ~~v~~-~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
+++++ ..||.+|++.+.++.|+ +... .....++.--+++.-.++ .-+++||
T Consensus 19 ~~v~~~~~tv~~l~~~L~~~~~~-~~~~-~~~~~~~~aVN~~~~~~~-----~~l~dgD 70 (81)
T PRK11130 19 LELAADFPTVEALRQHLAQKGDR-WALA-LEDGKLLAAVNQTLVSFD-----HPLTDGD 70 (81)
T ss_pred EEecCCCCCHHHHHHHHHHhCcc-HHhh-hcCCCEEEEECCEEcCCC-----CCCCCCC
Confidence 44543 57999999999998762 1110 012344555566544332 3466774
No 117
>PF00794 PI3K_rbd: PI3-kinase family, ras-binding domain; InterPro: IPR000341 Phosphatidylinositol 3-kinase (PI3K) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. A subset of PI3Ks has the capacity to bind and be activated by the GTP-bound small GTPase p21Ras (Ras). PI3Ks are recognised as one of the principal effectors of Ras signalling to the cell-cycle control machinery. In the structure of the Ras-PI3K gamma complex, contacts between the two molecules are made primarily via the so-called switch I region of Ras and the PI3K RBD. The RBD fold comprises a five-stranded mixed beta-sheet, flanked by two alpha-helices. Interaction between Ras and the PI3K RBD is primarily polar in character and, as characterised by kinetic measurements, is reversible and transient [].; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0005942 phosphatidylinositol 3-kinase complex; PDB: 2RD0_A 3HIZ_A 3HHM_A 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2Y3A_A 3L54_A ....
Probab=42.66 E-value=99 Score=20.85 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=42.7
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe--ecCCCCccccCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK--ILENNKTVGQCK 74 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr--~L~D~~tL~~~~ 74 (125)
+..+.|++.+.+......+.++.+.|+.+|-+.+..++-.. -..+...++--|==.|+ .|..+..|.+|.
T Consensus 14 ~~~i~v~v~~~~~~~~~t~~~~~~~t~~~li~~~l~k~~~~-~~~~~~~~dyvLKV~G~~EyL~g~~~L~~y~ 85 (106)
T PF00794_consen 14 NNKIKVSVHFENSQQSFTFQVDPNSTPEELIAQALKKKLKD-LLPPDPEDDYVLKVCGREEYLLGDHPLSQYE 85 (106)
T ss_dssp SSEEEEEEEETTCSEEEEEEEETTS-HHHHHHHHHHHHHHH-TT-CHHHHGEEEEETTSSEEE-SSS-GGGBH
T ss_pred CCeEEEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHHHhh-cCCcccccCEEEEecCceEEeeCCeeeeccH
Confidence 45677777777555556899999999999988887771100 01111122555544555 777888888876
No 118
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=42.52 E-value=52 Score=22.06 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=28.1
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC
Q 033172 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (125)
Q Consensus 20 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G 61 (125)
..+.+.+..+..+|.+.|+++.+ ..++..+|-|.-
T Consensus 9 Vai~v~~g~~y~~L~~~ls~kL~-------l~~~~~~LSY~~ 43 (78)
T cd06411 9 VALRAPRGADVSSLRALLSQALP-------QQAQRGQLSYRA 43 (78)
T ss_pred EEEEccCCCCHHHHHHHHHHHhc-------CChhhcEEEecC
Confidence 35788999999999999999965 337778887754
No 119
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=41.69 E-value=1.1e+02 Score=20.75 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=27.4
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p 42 (125)
+|+++.-+.++..+.++++.+-.+|.++|.+.+.
T Consensus 3 ikVKv~~~~Dv~~i~v~~~i~f~dL~~kIrdkf~ 36 (86)
T cd06408 3 IRVKVHAQDDTRYIMIGPDTGFADFEDKIRDKFG 36 (86)
T ss_pred EEEEEEecCcEEEEEcCCCCCHHHHHHHHHHHhC
Confidence 5566653336778899999999999999999965
No 120
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=40.81 E-value=1.2e+02 Score=28.32 Aligned_cols=47 Identities=19% Similarity=0.312 Sum_probs=36.7
Q ss_pred EEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeec
Q 033172 10 KFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64 (125)
Q Consensus 10 ~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L 64 (125)
.|-+.+++- ..+.++++.|+..+++.|..+ +++| .+.|-|+|.|...
T Consensus 318 iFs~~~~~~-~~~~~~~~ntl~~~~~~I~~~-----Tgip--e~~qeLL~e~~~~ 364 (732)
T KOG4250|consen 318 IFSMVQATS-HEYYVHADNTLHSLIERISKQ-----TGIP--EGKQELLFEGGLS 364 (732)
T ss_pred EEeeccceE-EEEecChhhhHHHHHHHHHHh-----hCCC--CccceeeeecCcc
Confidence 455667744 478999999999999999999 2232 8889999998744
No 121
>COG4055 McrD Methyl coenzyme M reductase, subunit D [Coenzyme metabolism]
Probab=40.43 E-value=87 Score=23.72 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=37.7
Q ss_pred EEeCCCCeeeeEEeCCcc-hHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172 11 FRLYDGSDIGPFRYSSAS-TVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~-TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
+++..| .+ .+++++.+ +++.+++...+-+|=++ + ++-|+++.+..|..|| ++.|
T Consensus 78 L~VkvG-ri-~~eie~e~~~~e~ie~ic~e~lPf~y-------~----v~vG~F~r~kpTVTDy-~KyG 132 (165)
T COG4055 78 LKVKVG-RI-ILEIEDEDETMEKIEEICDEMLPFGY-------E----VRVGKFTRRKPTVTDY-IKYG 132 (165)
T ss_pred EEEEee-EE-EEEecCcHhHHHHHHHHHHHhCCCce-------e----eeeeeeeccCCcchhh-hhhC
Confidence 344556 33 36787775 89999888888787332 2 4679999999999987 3444
No 122
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=39.63 E-value=14 Score=30.70 Aligned_cols=47 Identities=26% Similarity=0.405 Sum_probs=35.5
Q ss_pred CCCCeeeeEEeC-CcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCcc
Q 033172 14 YDGSDIGPFRYS-SASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTV 70 (125)
Q Consensus 14 ~~g~~~~~~~v~-~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL 70 (125)
.+|.. ....+. .+..|..+|+++... ++ ++-|++.+-|.+|.|+.++
T Consensus 290 ~dg~~-~~~~~~~~~~~~~~~k~k~~~~~~i~---------~~~q~~~~~~~~l~d~~~~ 339 (341)
T KOG0007|consen 290 ADGQV-IKITVQSLSENVASLKEKIADESQIP---------ANKQKLRGEGAFLKDNRSL 339 (341)
T ss_pred CCCce-eeeccccccccccccccccccccccc---------hhheeeccCCcccCccccc
Confidence 35533 344454 677889999999888 55 8999999999999988554
No 123
>COG5100 NPL4 Nuclear pore protein [Nuclear structure]
Probab=37.06 E-value=1.8e+02 Score=25.65 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=45.8
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCC--cc--CCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGK--TI--VPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~--~~--~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
+|||-..|. ..+++.++++.+.|-++|...+.++. +. .-..++.|-.||+ +..++|+.++|+..|+
T Consensus 3 ~rfRsk~G~--~Rve~qe~d~lg~l~~kll~~~~~n~~~e~~svc~~p~~qG~~~s---~l~dqt~~dlGL~hGq 72 (571)
T COG5100 3 FRFRSKEGQ--RRVEVQESDVLGMLSPKLLAFFEVNYSPEQISVCSAPDGQGEIFS---LLKDQTPDDLGLRHGQ 72 (571)
T ss_pred EEEecCCCc--eeeeccccchhhhhhHHHHhhhccCCCccceEEEeCCCCCceeee---cccccChhhhccccCc
Confidence 788888884 35799999999999999999855331 11 0011333444443 4678899999999993
No 124
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=36.93 E-value=37 Score=22.68 Aligned_cols=20 Identities=15% Similarity=0.338 Sum_probs=18.5
Q ss_pred eEEeCCcchHHHHHHHHHhh
Q 033172 21 PFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~ 40 (125)
.+.++.+.|+.++|+.++++
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~ 22 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQ 22 (78)
T ss_pred eEEccccccHHHHHHHHHHH
Confidence 57889999999999999998
No 125
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=33.97 E-value=1.2e+02 Score=19.06 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=34.5
Q ss_pred EEEEEEeCCCCe---eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE
Q 033172 7 IDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI 58 (125)
Q Consensus 7 v~l~~~~~~g~~---~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI 58 (125)
-.||+-..++.. ...+.+++++|+.+|-+.+.+++- ++.++..-.|.
T Consensus 3 ~~lrVy~~~~~~~~~~k~i~v~~~tTa~evi~~~l~k~~-----l~~~~~~y~L~ 52 (93)
T PF00788_consen 3 GVLRVYDGDGSPGSTYKTIKVSSSTTAREVIEMALEKFG-----LAEDPSDYCLV 52 (93)
T ss_dssp EEEEEEETTSSSCCSEEEEEEETTSBHHHHHHHHHHHTT-----TSSSGGGEEEE
T ss_pred eEEEEEcCCCCCCccEEEEEECCCCCHHHHHHHHHHHhC-----CCCCCCCEEEE
Confidence 456777777741 668999999999999999999843 12446777774
No 126
>TIGR03260 met_CoM_red_D methyl-coenzyme M reductase operon protein D. Members of this protein family are protein D, a non-structural protein, of the operon for methyl coenzyme M reductase, also called coenzyme-B sulfoethylthiotransferase (EC 2.8.4.1). That enzyme, with alpha, beta, and gamma subunits, catalyzes the last step in methanogenesis; it has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this model does not separate the isozymes. Proteins in this family are expressed at much lower levels than the methyl-coenzyme M reductase itself and associate and have been shown to form at least transient associations. The precise function is unknown.
Probab=33.64 E-value=1e+02 Score=23.12 Aligned_cols=41 Identities=20% Similarity=0.279 Sum_probs=31.9
Q ss_pred EEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccC
Q 033172 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (125)
Q Consensus 22 ~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~ 73 (125)
+++...+.+.++++...+.+|=+ - -|.-|+++.+..|++||
T Consensus 78 le~~~~~~i~~I~eiC~e~~pF~-------y----~i~~g~f~r~~~TvtDY 118 (150)
T TIGR03260 78 LELEDEDIVEEIEEICKEMLPFG-------Y----EVRVGKFLRTKPTVTDY 118 (150)
T ss_pred EEecCHHHHHHHHHHHHhhCCCc-------e----EeeeeeEeecCCchhhh
Confidence 56668888999999888887711 1 14678999999999987
No 127
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=33.42 E-value=45 Score=19.05 Aligned_cols=15 Identities=7% Similarity=0.370 Sum_probs=12.5
Q ss_pred CCCceeEEEecCeec
Q 033172 50 KAVTEIKLISSGKIL 64 (125)
Q Consensus 50 ~~~~~qrLI~~Gr~L 64 (125)
+..+++.+.|+|+..
T Consensus 3 ~~~~qLTIfY~G~V~ 17 (36)
T PF06200_consen 3 PETAQLTIFYGGQVC 17 (36)
T ss_pred CCCCcEEEEECCEEE
Confidence 347899999999966
No 128
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=31.10 E-value=1.4e+02 Score=18.68 Aligned_cols=55 Identities=16% Similarity=0.213 Sum_probs=36.8
Q ss_pred EEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCC
Q 033172 7 IDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN 66 (125)
Q Consensus 7 v~l~~~~~~g~---~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D 66 (125)
|.|+|....|. .-.++.++.+.|..+|-+.|.+-.+.+.+ +-...++..|..|.+
T Consensus 2 v~v~F~t~~~~~~~~~~~~~VP~~~t~~~Ls~LvN~LL~~~~~-----~vpfdF~i~~~~lr~ 59 (65)
T PF08154_consen 2 VQVQFVTEDGEYEVPGTPISVPSNITRKELSELVNQLLDDEEE-----PVPFDFLINGEELRT 59 (65)
T ss_pred EEEEEEcCCCCccCCCCCEEEeCCCCHHHHHHHHHHHhccCCC-----CCcEEEEECCEEeec
Confidence 67888887762 11258999999999998887776522222 334667777776644
No 129
>PRK12385 fumarate reductase iron-sulfur subunit; Provisional
Probab=30.33 E-value=1.5e+02 Score=23.30 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=29.4
Q ss_pred CCCCCeEEEEEEeCCC-C------eeeeEEeCCcchHHHHHHHHHhhC
Q 033172 1 MPDEELIDIKFRLYDG-S------DIGPFRYSSASTVDMLKQRIVSDW 41 (125)
Q Consensus 1 ~~~~~~v~l~~~~~~g-~------~~~~~~v~~~~TV~~lK~~I~~~~ 41 (125)
|+++..++|+++=.+. . +-+.+++++.+||.++=..|.+++
T Consensus 1 ~~~~~~v~~~i~R~~~~~~~~~~~~~~~v~~~~~~tvl~~L~~ik~~~ 48 (244)
T PRK12385 1 MAEMKNLKIEVLRYNPEVDTEPHSQTYEVPYDETTSLLDALGYIKDNL 48 (244)
T ss_pred CCCCcEEEEEEEeeCCCCCCCceeEEEEeeCCCCCcHHHHHHHHHHhc
Confidence 7888888888554332 1 223456679999999988888774
No 130
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=29.09 E-value=92 Score=22.49 Aligned_cols=44 Identities=18% Similarity=0.218 Sum_probs=32.2
Q ss_pred EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccC
Q 033172 23 RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC 73 (125)
Q Consensus 23 ~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~ 73 (125)
-|+.+.||+++...|..++. .+++++=|..++-.+..+.++++.
T Consensus 46 lVP~d~tV~qF~~iIRkrl~-------l~~~k~flfVnn~lp~~s~~mg~l 89 (121)
T PTZ00380 46 ALPRDATVAELEAAVRQALG-------TSAKKVTLAIEGSTPAVTATVGDI 89 (121)
T ss_pred EcCCCCcHHHHHHHHHHHcC-------CChhHEEEEECCccCCccchHHHH
Confidence 69999999999999999854 225666555555555777787763
No 131
>PF00894 Luteo_coat: Luteovirus coat protein; InterPro: IPR001517 Barley yellow dwarf virus (BYDV) can be separated into two groups based on serological relationships, presumably governed by the viral capsid structure []. Coding regions of coat proteins have been identified for the MAV-PS1, P-PAV (group 1) and NY-RPV (group 2) isolates of BYDV. Group 1 proteins show 71% sequence similarity to each other, 51% similarity to those of group 2, and a high degree of similarity to those from other luteoviruses (including coat proteins from Beet western yellows virus (BWYV) [] and Potato leafroll virus (PLrV) [, ]). Among luteovirus coat protein sequences in general, several highly conserved domains can be identified, while other domains differentiate group 1 isolates from group 2 and other luteoviruses. Sequence comparisons between the genomes of PLrV, BWYV and BYDV have revealed ~65% protein sequence similarity between the capsid proteins of BWYV and PLrV and ~45% similarity between BYDV and PLrV []. The N-terminal regions of these sequences, like those of many plant virus capsid proteins, is highly basic. These regions may be involved in protein-RNA interaction.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=28.88 E-value=1.4e+02 Score=22.12 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=36.7
Q ss_pred eEEEEEEe-----CCCCeeeeEEeCCcchHHHHHHHHHhh---------CCCC----CccCCCCCceeEEEecCe
Q 033172 6 LIDIKFRL-----YDGSDIGPFRYSSASTVDMLKQRIVSD---------WPKG----KTIVPKAVTEIKLISSGK 62 (125)
Q Consensus 6 ~v~l~~~~-----~~g~~~~~~~v~~~~TV~~lK~~I~~~---------~p~~----~~~~P~~~~~qrLI~~Gr 62 (125)
.|.|.|+. ..| .+ .+++|+..+...|.-.|..- |++. .+-.+.+.+|.||+|.|-
T Consensus 45 ~v~v~f~SeAsstt~G-sI-ayElD~~ck~s~l~S~in~f~I~k~g~ksf~a~~InG~~w~~ss~dQF~iLYKgN 117 (138)
T PF00894_consen 45 NVKVEFISEASSTTSG-SI-AYELDPHCKQSTLGSYINKFSITKNGSKSFPAKQINGKEWHDSSEDQFRILYKGN 117 (138)
T ss_pred EEEEEEEeecccCCCc-cE-EEEecCccchhhhhheeeeEeeecccccccchhccCCccccccCcceEEEEEecC
Confidence 45667766 234 23 58999999988887776542 5553 122335689999999993
No 132
>KOG2689 consensus Predicted ubiquitin regulatory protein [Posttranslational modification, protein turnover, chaperones]
Probab=28.64 E-value=87 Score=25.90 Aligned_cols=35 Identities=14% Similarity=0.300 Sum_probs=30.1
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
..-+|.||+.||..+ ...|++..+...|+.-|..+
T Consensus 209 s~crlQiRl~DG~Tl-~~tF~a~E~L~~VR~wVd~n 243 (290)
T KOG2689|consen 209 SQCRLQIRLPDGQTL-TQTFNARETLAAVRLWVDLN 243 (290)
T ss_pred cceEEEEEcCCCCee-eeecCchhhHHHHHHHHHHh
Confidence 455788999999655 67999999999999999988
No 133
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=28.32 E-value=1.6e+02 Score=18.68 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.8
Q ss_pred eeeeEEeCCcchHHHHHHHHHhh
Q 033172 18 DIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 18 ~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
....+.++.++|..+|-+.+.++
T Consensus 13 ~~kti~V~~~~t~~~Vi~~~l~k 35 (87)
T cd01768 13 TYKTLRVSKDTTAQDVIQQLLKK 35 (87)
T ss_pred cEEEEEECCCCCHHHHHHHHHHH
Confidence 55689999999999999999998
No 134
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=28.08 E-value=98 Score=25.47 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=37.0
Q ss_pred EeCCcchHHHHHHHHHhhC---CCCCc-----cCCCCCceeEEEecCeecCCCCccccCC
Q 033172 23 RYSSASTVDMLKQRIVSDW---PKGKT-----IVPKAVTEIKLISSGKILENNKTVGQCK 74 (125)
Q Consensus 23 ~v~~~~TV~~lK~~I~~~~---p~~~~-----~~P~~~~~qrLI~~Gr~L~D~~tL~~~~ 74 (125)
.-..---|..|++.|++++ |.... ..+...+.+-|+|+|+.|+.+=||+..+
T Consensus 253 ~A~~mLrvkKI~~yV~ek~~~~~~~~~~~~~~~~~~p~e~lEl~C~gqvL~~~mtLaTVr 312 (331)
T PF11816_consen 253 NAPRMLRVKKILEYVAEKLEKTPESKTPEMKPKKLKPEEWLELLCNGQVLPPDMTLATVR 312 (331)
T ss_pred cccchhhhHHHHHHHHHHhccCccccCccccccCCCCCceEEEEeCCeEcCCcCCHHHHH
Confidence 3334456788888999987 21111 1223488999999999999999998766
No 135
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=28.04 E-value=1.5e+02 Score=19.74 Aligned_cols=50 Identities=12% Similarity=0.088 Sum_probs=25.7
Q ss_pred CcchHHHHHHHHHhh-CCCCCccCCCCCceeEEEecCee----cCCCCccccCCCCCC
Q 033172 26 SASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLISSGKI----LENNKTVGQCKIPYG 78 (125)
Q Consensus 26 ~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI~~Gr~----L~D~~tL~~~~i~~g 78 (125)
..+|+.+|-++|-.. .- . ..|.=.-.-++||..-. -..+++|+++||..|
T Consensus 7 ~~~TL~~lv~~Vlk~~Lg--~-~~P~v~~~~~ilyd~de~~~~~~l~k~L~elgi~~g 61 (87)
T PF14732_consen 7 KKMTLGDLVEKVLKKKLG--M-NEPDVSVGGTILYDSDEEEYDDNLPKKLSELGIVNG 61 (87)
T ss_dssp TT-BHHHHHHHCCCCCS-----SSEEEEES-EEEE-SSSSSSTTCTTSBGGGGT--TT
T ss_pred hhCcHHHHHHHHHHhccC--C-CCCEEEeCCCEEEcCCcchhhhcccCChhHcCCCCC
Confidence 356888888877654 11 0 11110115566666543 234789999999998
No 136
>PRK05659 sulfur carrier protein ThiS; Validated
Probab=27.65 E-value=1.5e+02 Score=17.99 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=32.1
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+| .++++++..||.++=+.+ .++ ...+-+.++|.++.-.. -.+.-+++||
T Consensus 5 vNG---~~~~~~~~~tl~~lL~~l--~~~---------~~~vav~vNg~iv~r~~-~~~~~l~~gD 55 (66)
T PRK05659 5 LNG---EPRELPDGESVAALLARE--GLA---------GRRVAVEVNGEIVPRSQ-HASTALREGD 55 (66)
T ss_pred ECC---eEEEcCCCCCHHHHHHhc--CCC---------CCeEEEEECCeEeCHHH-cCcccCCCCC
Confidence 466 356888888988775443 244 67777888998775221 1234466775
No 137
>KOG4102 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.48 E-value=37 Score=24.59 Aligned_cols=9 Identities=11% Similarity=0.058 Sum_probs=6.9
Q ss_pred CCCCcEEEe
Q 033172 106 GCFLASCSL 114 (125)
Q Consensus 106 ~~~~c~C~i 114 (125)
+++.|||-.
T Consensus 60 kKSKcCCIy 68 (121)
T KOG4102|consen 60 KKSKCCCIY 68 (121)
T ss_pred cccceeEEE
Confidence 788998853
No 138
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=27.46 E-value=2e+02 Score=19.54 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=33.6
Q ss_pred eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE--ec--Ce-ecCC-CCccccCCCCCC
Q 033172 19 IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI--SS--GK-ILEN-NKTVGQCKIPYG 78 (125)
Q Consensus 19 ~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI--~~--Gr-~L~D-~~tL~~~~i~~g 78 (125)
.....|+..+||..|...+.+.+- + ..+-||= |+ +. .|.+ ..||++++|..|
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~-----i---~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~g 72 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFN-----I---QEETRLWNKYSENSYELLNNPEITVEDAGLYDG 72 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT---------TS-EEEEEECTTTCEEEE--TTSBTTTTT--TT
T ss_pred HhHhhccccChHHHHHHHHHHHhC-----C---CccceehhccCCcchhhhCCCCccHHHccCcCC
Confidence 345789999999999999999854 1 3446763 32 22 4644 579999999988
No 139
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=27.28 E-value=2.2e+02 Score=19.84 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=24.8
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
||+--.|+ .+..+..+.++||.+|-..+..+
T Consensus 5 IRIFr~D~-Tf~Tls~~l~tTv~eli~~L~rK 35 (97)
T cd01775 5 IRVFRSDG-TFTTLSCPLNTTVSELIPQLAKK 35 (97)
T ss_pred EEEEecCC-cEEEEEcCCcCcHHHHHHHHHHh
Confidence 45544666 44578999999999999999998
No 140
>PRK06083 sulfur carrier protein ThiS; Provisional
Probab=26.68 E-value=2e+02 Score=19.12 Aligned_cols=59 Identities=7% Similarity=0.174 Sum_probs=37.2
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
..+.+++. .+| .+.++++..||.+|=+.+ .+| ...+-+-++|.++. ...-++..+++||
T Consensus 15 ~~~~m~I~-VNG---~~~~~~~~~tl~~LL~~l--~~~---------~~~vAVevNg~iVp-r~~w~~t~L~egD 73 (84)
T PRK06083 15 AMVLITIS-IND---QSIQVDISSSLAQIIAQL--SLP---------ELGCVFAINNQVVP-RSEWQSTVLSSGD 73 (84)
T ss_pred CCceEEEE-ECC---eEEEcCCCCcHHHHHHHc--CCC---------CceEEEEECCEEeC-HHHcCcccCCCCC
Confidence 44445543 356 256888888988776543 244 66677788999883 2233456677885
No 141
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=26.53 E-value=64 Score=27.98 Aligned_cols=55 Identities=15% Similarity=0.332 Sum_probs=37.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
++++++.+.+...+.-..+..+++| .+...|| +|+ |.|.+|.+++++.+-|....
T Consensus 198 ~f~~~l~l~Gs~~l~~~P~g~~t~v-----~l~S~W~--------~PS-----F~G~fLP~~r~i~~~GF~A~ 252 (430)
T PF06123_consen 198 PFSFSLQLNGSESLSFVPLGKTTEV-----TLKSDWP--------HPS-----FTGAFLPEEREITDSGFSAQ 252 (430)
T ss_pred eEEEEEEecCcCcEEEEecCcccEE-----EEEcCCc--------CCC-----CCCccCCCCCccCCCCceeE
Confidence 3556666655545555556666554 4566798 456 99999999999998887654
No 142
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised. This family is only found in eukaryotes. This presumed domain is typically between 285 to 342 amino acids in length.
Probab=26.15 E-value=63 Score=26.61 Aligned_cols=29 Identities=17% Similarity=0.101 Sum_probs=25.3
Q ss_pred EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe
Q 033172 23 RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (125)
Q Consensus 23 ~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr 62 (125)
.+++++|.+.||..|+.. .+++.|-|.-+
T Consensus 301 vL~~~mtLaTVr~~~WK~-----------~~di~L~YR~k 329 (331)
T PF11816_consen 301 VLPPDMTLATVRTFIWKS-----------SGDIVLHYRRK 329 (331)
T ss_pred EcCCcCCHHHHHHhhccC-----------CCeEEEEEEec
Confidence 578999999999999988 78999988654
No 143
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=25.28 E-value=1.6e+02 Score=20.06 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=29.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
+++|++-+.+|..+ .+++--+++..+|=+.+.++
T Consensus 1 ~V~L~V~Lpdg~~i-~V~v~~s~~a~~Vleav~~k 34 (87)
T cd01777 1 DVELRIALPDKATV-TVRVRKNATTDQVYQALVAK 34 (87)
T ss_pred CeEEEEEccCCCEE-EEEEEEcccHHHHHHHHHHH
Confidence 47899999999766 67999999999999999988
No 144
>PRK11715 inner membrane protein; Provisional
Probab=23.95 E-value=76 Score=27.58 Aligned_cols=54 Identities=15% Similarity=0.350 Sum_probs=37.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
+++++.+.+...+.-+.+..+++| .+.+.|| +|+ |.|.+|.+++++++-|....
T Consensus 206 f~~~l~L~Gs~~l~~~P~G~~t~v-----~l~S~Wp--------hPS-----F~G~fLP~~R~It~~GF~A~ 259 (436)
T PRK11715 206 FDFALNLRGTGSLSVVPLGRNTEV-----TLTSNWP--------HPS-----FVGDFLPAEREISESGFQAQ 259 (436)
T ss_pred EEEEEEecCccceEEEecCcccee-----EEEcCCc--------CCC-----CCCccCCCCCeeCCCCeeeE
Confidence 555555555555655666666654 4567798 456 99999999999998887654
No 145
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=23.18 E-value=1.4e+02 Score=20.28 Aligned_cols=34 Identities=9% Similarity=0.060 Sum_probs=26.3
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p 42 (125)
|++|..-+.++....+++..|-++|.+++.+-++
T Consensus 1 i~~K~~y~gdi~it~~d~~~s~e~L~~~v~~~c~ 34 (83)
T cd06404 1 VRVKAAYNGDIMITSIDPSISLEELCNEVRDMCR 34 (83)
T ss_pred CeEEEEecCcEEEEEcCCCcCHHHHHHHHHHHhC
Confidence 3555543337777899999999999999999854
No 146
>PF05520 Citrus_P18: Citrus tristeza virus P18 protein; InterPro: IPR008452 This family contains the P18 proteins of citrus tristeza virus (CTV). CTV is a member of the closterovirus group and is one of the more complex single-stranded RNA viruses. Assembly of the viral genome into virions is a critical process of the virus life cycle often defining the ability of the virus to move within the plant and to be transmitted horizontally to other plants. Closteroviridae virions are polar helical rods assembled primarily by a major coat protein, but with a related minor coat protein at one end. It is the only virus family that encodes a protein with similarity to cellular chaperones, a 70kDa heat-shock protein homologue (HSP70h). Deletion mutagenesis reveals that p33, p6, p18, p13, p20, and p23 genes are not needed for virion formation. Their function is unknown [].
Probab=23.14 E-value=50 Score=24.22 Aligned_cols=16 Identities=38% Similarity=0.702 Sum_probs=12.5
Q ss_pred CCCCcEEEecceeeeeecC
Q 033172 106 GCFLASCSLFTFWLYLVGT 124 (125)
Q Consensus 106 ~~~~c~C~i~~~~~~~~~~ 124 (125)
..+.|+|+| |-|--||
T Consensus 134 ddsrcgcsi---wcynngt 149 (167)
T PF05520_consen 134 DDSRCGCSI---WCYNNGT 149 (167)
T ss_pred cccccceEE---EEEcCCc
Confidence 578999997 7776665
No 147
>PF14941 OAF: Transcriptional regulator, Out at first
Probab=22.63 E-value=1.5e+02 Score=23.95 Aligned_cols=37 Identities=22% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 3 ~~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
++|.|+|.|+-.||. +..+.++=..-|.-+|..|-.+
T Consensus 24 ~~d~itlef~~~DGt-lit~~~Df~~~v~i~kalilge 60 (240)
T PF14941_consen 24 EEDTITLEFQRSDGT-LITQLADFKQEVQIFKALILGE 60 (240)
T ss_pred CCceEEEEEEcCCCc-EEeeehhhhhHHHHHHHHHcCh
Confidence 479999999999994 4456666666777777777655
No 148
>PF15349 DCA16: DDB1- and CUL4-associated factor 16
Probab=22.09 E-value=26 Score=26.72 Aligned_cols=11 Identities=18% Similarity=0.217 Sum_probs=8.8
Q ss_pred CCCCcEEEecc
Q 033172 106 GCFLASCSLFT 116 (125)
Q Consensus 106 ~~~~c~C~i~~ 116 (125)
-.+||||-|+|
T Consensus 173 cvsgcccgwlt 183 (216)
T PF15349_consen 173 CVSGCCCGWLT 183 (216)
T ss_pred hhcccchhhhh
Confidence 36899998876
No 149
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=21.91 E-value=2.5e+02 Score=18.71 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=37.8
Q ss_pred eEEEEEEeCCCCe---eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeec-CCCCcccc
Q 033172 6 LIDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL-ENNKTVGQ 72 (125)
Q Consensus 6 ~v~l~~~~~~g~~---~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L-~D~~tL~~ 72 (125)
+|.|+|+-.+.-. -..+.++.+.||+++...|..+.. .. +.+.+-|..+.-++ ..+.++++
T Consensus 1 kv~i~~~~~g~~p~l~k~kflv~~~~tv~~~~~~lrk~L~----l~--~~~slflyvnn~f~p~~d~~~g~ 65 (87)
T cd01612 1 KVTIRFKPIGSAPILKQKVFKISATQSFQAVIDFLRKRLK----LK--ASDSLFLYINNSFAPSPDENVGN 65 (87)
T ss_pred CeEEEEEECCCCccccccEEEeCCCCCHHHHHHHHHHHhC----CC--ccCeEEEEECCccCCCchhHHHH
Confidence 3677777654411 124789999999999999998843 00 12345554444444 34567765
No 150
>PRK08053 sulfur carrier protein ThiS; Provisional
Probab=21.56 E-value=2.1e+02 Score=17.59 Aligned_cols=51 Identities=16% Similarity=0.258 Sum_probs=33.6
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+| .+++++...||.+|-+.+... ...+.+-.+|+++.-+ .-++..+++||
T Consensus 5 vNg---~~~~~~~~~tl~~ll~~l~~~-----------~~~vaVavN~~iv~r~-~w~~~~L~~gD 55 (66)
T PRK08053 5 FND---QPMQCAAGQTVHELLEQLNQL-----------QPGAALAINQQIIPRE-QWAQHIVQDGD 55 (66)
T ss_pred ECC---eEEEcCCCCCHHHHHHHcCCC-----------CCcEEEEECCEEeChH-HcCccccCCCC
Confidence 466 356888889999988765443 4568888999988521 12234466775
No 151
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=21.50 E-value=52 Score=29.24 Aligned_cols=45 Identities=24% Similarity=0.258 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCC
Q 033172 27 ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 27 ~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
.-|=.++...|++++- ++ -+++|.|-+||+|.-.+||.+-|++.+
T Consensus 59 ~i~Gselqa~iakklg-----i~--enhvKci~~~Kils~~ktlaeQglk~n 103 (568)
T KOG2561|consen 59 HITGSELQALIAKKLG-----IK--ENHVKCIINGKILSCRKTLAEQGLKIN 103 (568)
T ss_pred ccccHHHHHHHHHHcC-----Cc--hhhhheeeccceeecccchhhhhhhhh
Confidence 3456689999999832 22 569999999999999999999998855
No 152
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=21.47 E-value=2.7e+02 Score=18.77 Aligned_cols=38 Identities=11% Similarity=0.295 Sum_probs=26.0
Q ss_pred eeeeEEeC-----CcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC
Q 033172 18 DIGPFRYS-----SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG 61 (125)
Q Consensus 18 ~~~~~~v~-----~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G 61 (125)
++.-|.++ ++.+..+|+++|++.+. .| +-....|-|.-
T Consensus 10 ~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~-----l~-~~~~~~l~Y~D 52 (91)
T cd06398 10 TLRRFTFPVAENQLDLNMDGLREKVEELFS-----LS-PDADLSLTYTD 52 (91)
T ss_pred EEEEEEeccccccCCCCHHHHHHHHHHHhC-----CC-CCCcEEEEEEC
Confidence 45556666 47899999999999964 11 12566776654
No 153
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=20.90 E-value=3.8e+02 Score=22.84 Aligned_cols=47 Identities=17% Similarity=0.247 Sum_probs=30.9
Q ss_pred EEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCe
Q 033172 9 IKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK 62 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~-~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr 62 (125)
|.+|+.+.+++..+.|+- ..+|-+||..|-.+ .- ..-+-+-|+|+|.
T Consensus 5 I~YrFkSqkn~SRI~FdGTGl~vfdlKrEII~q~Klg-------~g~DFdLl~yn~~ 54 (427)
T COG5222 5 INYRFKSQKNFSRISFDGTGLPVFDLKREIINQRKLG-------SGKDFDLLFYNGE 54 (427)
T ss_pred eEEEeeccCCcceeEeccCCccHHHHHHHHHHhhhcc-------CCccceEEEecCC
Confidence 445556676776677753 58999999888776 21 1134556678875
No 154
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=20.76 E-value=2.5e+02 Score=18.14 Aligned_cols=31 Identities=10% Similarity=0.089 Sum_probs=25.5
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
+++-+.+|... .+.+-|++||.++=+++-+.
T Consensus 2 ~~V~LPng~~t-~V~vrpg~ti~d~L~~~c~k 32 (72)
T cd01760 2 CRVYLPNGQRT-VVPVRPGMSVRDVLAKACKK 32 (72)
T ss_pred EEEECcCCCeE-EEEECCCCCHHHHHHHHHHH
Confidence 56778899554 68999999999998888877
No 155
>PF14191 YodL: YodL-like
Probab=20.56 E-value=2.8e+02 Score=19.28 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=24.9
Q ss_pred EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe
Q 033172 23 RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (125)
Q Consensus 23 ~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr 62 (125)
++.++++.++|-++....-|++....+.+++++-.|+.|.
T Consensus 45 ~l~~~~~Le~iy~~FN~~~P~df~GhsLSvSDVV~l~~~g 84 (103)
T PF14191_consen 45 ELDHTETLEDIYERFNVDHPEDFKGHSLSVSDVVELYDGG 84 (103)
T ss_pred ecCCCCCHHHHHHHhCcCCCCCCCCCccChheEEEEEcCC
Confidence 4456666777766666666666555556666666666543
No 156
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules. The yeast proteins are involved in the autophagosome, and Atg8 binds Atg19, via its N terminus and the C terminus of Atg19. Light chain 3 is proposed to function primarily as a subunit of microtubule associated proteins 1A and 1B and that its expression may regulate microtubule binding activity [] Related proteins that belong to this group include the human ganglioside expression factor and a symbiosis-related fungal protein.; PDB: 3ECI_A 3D32_B 1GNU_A 1KM7_A 1KLV_A 1KOT_A 3DOW_A 1KJT_A 1V49_A 2ZJD_C ....
Probab=20.52 E-value=2.5e+02 Score=19.48 Aligned_cols=45 Identities=18% Similarity=0.231 Sum_probs=32.9
Q ss_pred EEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCcccc
Q 033172 22 FRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQ 72 (125)
Q Consensus 22 ~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~ 72 (125)
+-++.+.||+++...|..+.. ..| -..+=|..++..+..+.||++
T Consensus 37 fLvp~~~tv~qf~~~ir~rl~----l~~--~~alfl~Vn~~lp~~s~tm~e 81 (104)
T PF02991_consen 37 FLVPKDLTVGQFVYIIRKRLQ----LSP--EQALFLFVNNTLPSTSSTMGE 81 (104)
T ss_dssp EEEETTSBHHHHHHHHHHHTT------T--TS-EEEEBTTBESSTTSBHHH
T ss_pred EEEcCCCchhhHHHHhhhhhc----CCC--CceEEEEEcCcccchhhHHHH
Confidence 578999999999999999953 111 345667777766678888886
No 157
>cd01764 Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.
Probab=20.21 E-value=2.8e+02 Score=18.56 Aligned_cols=54 Identities=11% Similarity=0.058 Sum_probs=30.1
Q ss_pred EeCCcchHHHHHHHHHhhCCCCCccCCC----CCceeEEEecCeecCCCCcc--ccCCCCCCC
Q 033172 23 RYSSASTVDMLKQRIVSDWPKGKTIVPK----AVTEIKLISSGKILENNKTV--GQCKIPYGE 79 (125)
Q Consensus 23 ~v~~~~TV~~lK~~I~~~~p~~~~~~P~----~~~~qrLI~~Gr~L~D~~tL--~~~~i~~gd 79 (125)
..+...||.+|=+.|.++.|...+..-. -...+.++.+|+ |-+.| .++.+++||
T Consensus 24 ~~~~~~tV~dll~~L~~~~~~~~~~lf~~~g~lr~~i~VlvN~~---di~~l~g~~t~L~dgD 83 (94)
T cd01764 24 DGEKPVTVGDLLDYVASNLLEERPDLFIEGGSVRPGIIVLINDT---DWELLGEEDYILEDGD 83 (94)
T ss_pred cCCCCCcHHHHHHHHHHhCchhhhhhEecCCcccCCEEEEECCc---cccccCCcccCCCCcC
Confidence 4446779999999999987643221100 023444555554 22233 246678884
Done!