Query 033172
Match_columns 125
No_of_seqs 101 out of 1024
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 17:37:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033172.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033172hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1se9_A Ubiquitin family; ubiqu 100.0 4.3E-34 1.5E-38 205.9 13.4 112 4-115 14-126 (126)
2 2gow_A HCG-1 protein, ubiquiti 100.0 8.5E-29 2.9E-33 177.8 12.1 106 4-115 15-125 (125)
3 1wgh_A Ubiquitin-like 3, HCG-1 99.9 1.4E-24 4.6E-29 154.2 13.6 97 4-105 14-111 (116)
4 1wgd_A Homocysteine-responsive 99.8 3.4E-18 1.2E-22 114.8 9.3 84 4-98 5-91 (93)
5 4dwf_A HLA-B-associated transc 99.8 8.7E-18 3E-22 111.6 10.9 80 4-100 3-84 (90)
6 3phx_B Ubiquitin-like protein 99.8 8.3E-18 2.8E-22 109.1 9.9 74 6-95 4-79 (79)
7 2uyz_B Small ubiquitin-related 99.7 8.8E-18 3E-22 109.0 8.8 77 4-96 1-79 (79)
8 2faz_A Ubiquitin-like containi 99.7 1.6E-17 5.5E-22 107.3 9.9 74 6-94 2-78 (78)
9 4eew_A Large proline-rich prot 99.7 1.7E-17 5.8E-22 109.8 10.2 72 4-92 15-88 (88)
10 4fbj_B NEDD8; effector-HOST ta 99.7 1.2E-17 4.1E-22 111.4 8.9 77 8-100 2-80 (88)
11 1wy8_A NP95-like ring finger p 99.7 2.5E-17 8.6E-22 109.0 10.3 80 4-98 5-87 (89)
12 3dbh_I NEDD8; cell cycle, acti 99.7 1.5E-17 5E-22 109.4 8.7 77 4-96 10-88 (88)
13 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 3.8E-17 1.3E-21 107.6 10.5 78 4-97 5-84 (87)
14 1wju_A NEDD8 ultimate buster-1 99.7 1.7E-17 5.9E-22 115.0 9.2 76 7-99 16-97 (100)
15 4hcn_B Polyubiquitin, ubiquiti 99.7 2.4E-17 8.3E-22 111.9 9.7 77 4-96 20-98 (98)
16 2kan_A Uncharacterized protein 99.7 3.6E-17 1.2E-21 110.9 10.1 80 4-98 13-93 (94)
17 2kdb_A Homocysteine-responsive 99.7 9.3E-18 3.2E-22 115.6 7.1 76 4-90 21-99 (99)
18 2wyq_A HHR23A, UV excision rep 99.7 4.3E-17 1.5E-21 106.7 9.7 81 5-96 4-84 (85)
19 2dzi_A Ubiquitin-like protein 99.7 3E-17 1E-21 106.2 8.8 76 3-94 4-81 (81)
20 2daf_A FLJ35834 protein; hypot 99.7 2E-17 6.8E-22 117.7 8.3 80 4-98 13-94 (118)
21 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 4.8E-17 1.6E-21 109.0 9.6 78 7-100 2-81 (96)
22 3v6c_B Ubiquitin; structural g 99.7 5.1E-17 1.7E-21 108.5 9.5 74 4-93 15-90 (91)
23 3mtn_B UBA80, ubcep1, ubiquiti 99.7 5.1E-17 1.7E-21 105.8 9.3 77 5-97 2-80 (85)
24 3plu_A Ubiquitin-like modifier 99.7 4.3E-17 1.5E-21 111.7 9.0 73 4-90 19-91 (93)
25 1ndd_A NEDD8, protein (ubiquit 99.7 7.2E-17 2.5E-21 102.7 9.3 73 8-96 2-76 (76)
26 1uh6_A Ubiquitin-like 5; beta- 99.7 3.8E-17 1.3E-21 113.2 8.5 72 4-91 26-99 (100)
27 3n3k_B Ubiquitin; hydrolase, p 99.7 4.6E-17 1.6E-21 106.2 8.4 76 6-97 3-80 (85)
28 1wia_A Hypothetical ubiquitin- 99.7 1.1E-16 3.6E-21 107.7 10.1 81 2-99 3-84 (95)
29 2lxa_A Ubiquitin-like protein 99.7 2.2E-17 7.4E-22 111.3 6.6 76 7-96 2-81 (87)
30 4a20_A Ubiquitin-like protein 99.7 7.4E-17 2.5E-21 110.9 9.3 78 4-94 17-97 (98)
31 3a9j_A Ubiquitin; protein comp 99.7 1.2E-16 4.3E-21 101.6 9.7 73 8-96 2-76 (76)
32 2hj8_A Interferon-induced 17 k 99.7 3.5E-17 1.2E-21 109.0 7.3 79 6-98 4-82 (88)
33 2bwf_A Ubiquitin-like protein 99.7 1.7E-16 5.9E-21 101.7 9.6 71 6-93 4-76 (77)
34 1wyw_B Ubiquitin-like protein 99.7 8.3E-17 2.9E-21 109.3 8.4 76 5-96 20-97 (97)
35 2kk8_A Uncharacterized protein 99.7 7.7E-17 2.6E-21 107.2 8.0 73 5-93 9-84 (84)
36 3m62_B UV excision repair prot 99.7 6.1E-17 2.1E-21 111.8 7.6 78 7-98 2-79 (106)
37 1uel_A HHR23B, UV excision rep 99.7 1.9E-16 6.6E-21 106.9 9.9 81 8-99 2-82 (95)
38 1yqb_A Ubiquilin 3; structural 99.7 1.3E-16 4.5E-21 109.2 8.9 77 4-97 20-98 (100)
39 1sif_A Ubiquitin; hydrophobic 99.7 1.3E-16 4.4E-21 106.4 8.5 75 6-96 9-85 (88)
40 1wx8_A Riken cDNA 4931431F19; 99.7 7.4E-17 2.5E-21 108.5 7.3 79 4-97 15-93 (96)
41 3vdz_A Ubiquitin-40S ribosomal 99.7 2.2E-16 7.5E-21 109.8 9.5 76 5-96 34-111 (111)
42 1j8c_A Ubiquitin-like protein 99.7 4.7E-16 1.6E-20 110.7 10.8 79 4-99 30-110 (125)
43 1wx7_A Ubiquilin 3; ubiquitin- 99.7 7.1E-16 2.4E-20 105.9 11.0 78 4-98 15-94 (106)
44 1we7_A SF3A1 protein; structur 99.7 3.7E-16 1.3E-20 109.0 9.5 81 5-99 24-114 (115)
45 1ttn_A DC-UBP, dendritic cell- 99.7 4.2E-16 1.4E-20 107.4 9.3 79 5-97 22-100 (106)
46 2klc_A Ubiquilin-1; ubiquitin- 99.7 5.9E-16 2E-20 106.0 9.9 76 4-96 23-100 (101)
47 1v2y_A 3300001G02RIK protein; 99.7 2.6E-16 8.7E-21 109.7 8.2 86 4-96 5-99 (105)
48 1v5o_A 1700011N24RIK protein; 99.7 9.6E-16 3.3E-20 104.9 10.5 84 4-100 5-92 (102)
49 1yx5_B Ubiquitin; proteasome, 99.7 8.2E-16 2.8E-20 103.9 9.7 75 8-98 2-78 (98)
50 2l7r_A Ubiquitin-like protein 99.6 3E-16 1E-20 105.8 7.5 74 5-96 18-93 (93)
51 3rt3_B Ubiquitin-like protein 99.6 7E-16 2.4E-20 111.7 9.9 77 5-97 80-158 (159)
52 2fnj_B Transcription elongatio 99.6 4.1E-16 1.4E-20 110.9 8.2 78 6-92 2-80 (118)
53 2kdi_A Ubiquitin, vacuolar pro 99.6 9.6E-16 3.3E-20 107.2 9.9 77 6-98 9-87 (114)
54 1we6_A Splicing factor, putati 99.6 5.7E-16 2E-20 107.3 8.5 79 5-97 26-108 (111)
55 4ajy_B Transcription elongatio 99.6 8.4E-16 2.9E-20 109.3 9.1 77 6-93 2-81 (118)
56 2ojr_A Ubiquitin; lanthide-bin 99.6 1.5E-15 5.3E-20 105.3 10.1 76 5-96 34-111 (111)
57 3l0w_B Monoubiquitinated proli 99.6 1.2E-15 3.9E-20 113.5 10.0 78 8-99 2-79 (169)
58 3m63_B Ubiquitin domain-contai 99.6 3.1E-16 1E-20 107.7 6.1 73 5-94 27-101 (101)
59 1x1m_A Ubiquitin-like protein 99.6 1.4E-15 4.7E-20 105.0 8.9 81 5-97 11-104 (107)
60 3b1l_X E3 ubiquitin-protein li 99.4 5.1E-17 1.7E-21 104.3 0.0 72 8-95 2-75 (76)
61 3u5c_f 40S ribosomal protein S 99.6 8.2E-17 2.8E-21 118.5 0.4 79 8-100 2-80 (152)
62 1wxv_A BAG-family molecular ch 99.6 6.5E-15 2.2E-19 98.4 9.6 78 4-96 5-88 (92)
63 1wgg_A Ubiquitin carboxyl-term 99.6 4.6E-15 1.6E-19 100.9 8.7 75 4-94 5-80 (96)
64 3q3f_A Ribonuclease/ubiquitin 99.6 3E-15 1E-19 113.7 8.4 77 6-98 105-183 (189)
65 3u30_A Ubiquitin, linear DI-ub 99.6 8.4E-15 2.9E-19 107.7 10.3 77 4-96 18-96 (172)
66 3b08_A Polyubiquitin-C, ubiqui 99.6 1.4E-14 4.7E-19 103.0 10.0 75 6-96 76-152 (152)
67 2kd0_A LRR repeats and ubiquit 99.6 1.1E-14 3.7E-19 96.7 8.5 64 14-93 19-84 (85)
68 1v5t_A 8430435I17RIK protein; 99.6 8.3E-15 2.8E-19 98.1 8.0 76 4-94 5-84 (90)
69 4b6w_A Tubulin-specific chaper 99.6 1.6E-14 5.6E-19 96.8 9.1 75 7-94 3-85 (86)
70 3rt3_B Ubiquitin-like protein 99.6 1.8E-14 6.2E-19 104.2 9.5 74 7-96 3-81 (159)
71 3u5e_m 60S ribosomal protein L 99.5 3.8E-16 1.3E-20 110.9 0.1 77 8-98 2-78 (128)
72 4dbg_A Ranbp-type and C3HC4-ty 99.5 3.7E-14 1.3E-18 99.0 10.1 75 6-95 22-102 (105)
73 3u30_A Ubiquitin, linear DI-ub 99.5 1.2E-14 4.2E-19 106.8 8.1 77 6-96 96-172 (172)
74 1v86_A DNA segment, CHR 7, way 99.5 1.1E-14 3.9E-19 98.6 7.0 73 4-94 15-89 (95)
75 3b08_A Polyubiquitin-C, ubiqui 99.5 5E-14 1.7E-18 100.1 9.7 73 8-96 2-76 (152)
76 2kjr_A CG11242; UBL, ubiquitin 99.5 1.3E-13 4.3E-18 94.1 8.5 74 4-90 13-93 (95)
77 2dzj_A Synaptic glycoprotein S 99.5 8.1E-14 2.8E-18 93.6 7.4 69 6-89 10-85 (88)
78 1oqy_A HHR23A, UV excision rep 99.5 1.3E-13 4.3E-18 113.8 7.9 84 4-97 5-88 (368)
79 2kj6_A Tubulin folding cofacto 99.4 3.2E-13 1.1E-17 92.5 8.3 76 4-92 12-95 (97)
80 3ai5_A Yeast enhanced green fl 99.4 3E-13 1E-17 109.4 8.9 73 5-93 232-306 (307)
81 1v6e_A Cytoskeleton-associated 99.4 4.9E-13 1.7E-17 90.2 8.5 78 4-94 5-89 (95)
82 2xzm_9 RPS31E; ribosome, trans 99.4 1.9E-14 6.6E-19 109.5 0.4 73 8-99 2-74 (189)
83 1t0y_A Tubulin folding cofacto 99.4 3.4E-12 1.2E-16 90.0 10.4 77 6-95 6-89 (122)
84 2dzm_A FAS-associated factor 1 99.4 8E-13 2.8E-17 91.1 6.2 76 7-98 10-87 (100)
85 1wf9_A NPL4 family protein; be 99.4 8.3E-13 2.8E-17 91.2 6.2 76 4-94 5-96 (107)
86 2io1_B Small ubiquitin-related 99.4 2.8E-12 9.6E-17 87.2 8.5 77 4-96 5-83 (94)
87 2io0_B Small ubiquitin-related 99.3 1.3E-11 4.6E-16 83.5 9.9 78 4-97 3-82 (91)
88 3shq_A UBLCP1; phosphatase, hy 99.3 8.5E-12 2.9E-16 101.0 7.4 78 3-95 2-82 (320)
89 2d07_B Ubiquitin-like protein 99.3 5.9E-11 2E-15 80.3 10.0 76 4-95 15-92 (93)
90 1wz0_A Ubiquitin-like protein 99.2 7.3E-11 2.5E-15 81.7 9.1 78 4-97 22-101 (104)
91 2kzr_A Ubiquitin thioesterase 99.2 1.4E-11 4.8E-16 81.5 5.2 71 8-93 2-78 (86)
92 1wm3_A Ubiquitin-like protein 99.2 1.4E-10 4.8E-15 74.7 8.8 68 7-90 2-71 (72)
93 2k8h_A Small ubiquitin protein 99.1 1.4E-10 4.7E-15 81.2 7.7 76 5-96 25-102 (110)
94 3a4r_A Nfatc2-interacting prot 99.1 3E-10 1E-14 74.5 8.6 71 4-90 5-78 (79)
95 2eke_C Ubiquitin-like protein 99.1 4E-10 1.4E-14 78.4 9.7 75 4-95 29-105 (106)
96 1wjn_A Tubulin-folding protein 99.0 4E-09 1.4E-13 71.0 9.1 77 4-94 7-94 (97)
97 3kyd_D Small ubiquitin-related 98.8 5.7E-08 2E-12 68.5 9.2 73 5-93 39-113 (115)
98 3pge_A SUMO-modified prolifera 98.7 2E-07 6.7E-12 71.3 10.3 79 4-99 27-107 (200)
99 3tix_A Ubiquitin-like protein 98.5 4.5E-07 1.5E-11 69.5 8.0 79 4-99 55-135 (207)
100 3v7o_A Minor nucleoprotein VP3 98.1 5.5E-07 1.9E-11 69.8 0.1 79 4-97 19-97 (227)
101 4efo_A Serine/threonine-protei 98.1 1.8E-05 6.3E-10 53.8 7.6 55 11-73 18-74 (94)
102 3qx1_A FAS-associated factor 1 97.9 8.2E-05 2.8E-09 48.6 8.7 70 4-89 5-80 (84)
103 2pjh_A Protein NPL4, nuclear p 97.9 4.4E-06 1.5E-10 54.8 2.2 66 6-80 4-74 (80)
104 2jxx_A Nfatc2-interacting prot 97.9 0.00011 3.8E-09 50.0 9.2 69 4-79 23-91 (97)
105 3uf8_A Ubiquitin-like protein 97.9 7.5E-05 2.6E-09 56.6 9.3 78 3-97 18-97 (209)
106 3goe_A DNA repair protein RAD6 97.8 0.00024 8.3E-09 47.1 8.7 66 5-80 8-76 (82)
107 3ix6_A TS, tsase, thymidylate 97.6 6.8E-06 2.3E-10 67.7 -0.2 80 4-98 19-98 (360)
108 2dzk_A UBX domain-containing p 97.5 0.0012 4.1E-08 45.3 9.8 75 4-92 11-90 (109)
109 1wj4_A KIAA0794 protein; UBX d 97.4 0.00095 3.2E-08 47.0 8.6 65 4-78 41-111 (124)
110 2cr5_A Reproduction 8; UBX dom 97.4 0.0016 5.5E-08 44.6 9.2 72 5-92 22-98 (109)
111 3ivf_A Talin-1; FERM domain, c 97.2 0.0027 9.3E-08 51.0 9.9 72 4-80 1-78 (371)
112 4da1_A Protein phosphatase 1K, 97.2 5.6E-05 1.9E-09 61.5 0.0 80 4-98 28-107 (389)
113 2bps_A YUKD protein; ubiquitin 97.2 0.00049 1.7E-08 45.5 4.5 71 6-79 4-76 (81)
114 2l76_A Nfatc2-interacting prot 97.1 0.0032 1.1E-07 42.9 8.3 65 4-79 19-85 (95)
115 1s3s_G P47 protein; AAA ATPase 97.1 0.0022 7.7E-08 45.1 7.5 68 4-78 50-120 (127)
116 2kc2_A Talin-1, F1; FERM, adhe 96.0 0.0069 2.4E-07 43.1 4.1 71 8-79 13-115 (128)
117 4e71_A Plexin-B2, MM1; transme 95.3 0.12 4E-06 35.9 8.3 81 5-92 10-110 (111)
118 2r2o_A Plexin-B1; effector dom 94.8 0.17 6E-06 36.3 8.1 83 5-94 23-130 (138)
119 3h6n_A Plexin-D1; structural g 94.1 0.47 1.6E-05 33.6 9.0 67 20-93 19-105 (127)
120 4e74_A Plexin-A4; RBD, structu 91.6 0.78 2.7E-05 32.0 7.1 81 6-93 13-115 (117)
121 4a3p_A Ubiquitin carboxyl-term 90.5 1.6 5.3E-05 32.7 8.4 52 20-78 142-200 (217)
122 2inc_C TOUB protein; DIIRON, 4 89.9 2.9 0.0001 27.5 8.7 58 21-79 16-75 (83)
123 3ge3_C Toluene-4-monooxygenase 88.3 3.4 0.00012 27.2 7.6 71 7-79 4-76 (84)
124 3hm6_X Plexin-B1; structural g 88.1 2.4 8.1E-05 37.2 8.7 81 6-93 257-362 (644)
125 2al3_A TUG long isoform; TUG U 88.1 2.3 7.8E-05 28.3 6.8 71 8-94 11-83 (90)
126 3jyu_A Ubiquitin carboxyl-term 87.9 6.8 0.00023 29.4 10.4 51 21-78 155-212 (231)
127 2v1y_A Phosphatidylinositol-4, 87.1 0.97 3.3E-05 31.1 4.7 71 5-78 18-97 (108)
128 3ig3_A Plxna3 protein; plexin 84.7 5.4 0.00018 34.9 9.1 82 6-94 233-336 (627)
129 1wgk_A Riken cDNA 2900073H19 p 84.0 7.1 0.00024 26.5 7.9 67 21-97 33-109 (114)
130 3kuz_A Plexin-C1; structural g 84.0 6.4 0.00022 27.7 7.8 77 7-90 20-124 (126)
131 3po0_A Small archaeal modifier 83.5 5.1 0.00018 25.2 6.7 54 20-79 20-78 (89)
132 1vjk_A Molybdopterin convertin 81.2 5 0.00017 26.0 6.1 68 7-79 10-87 (98)
133 2y3a_A Phosphatidylinositol-4, 80.4 13 0.00045 34.4 10.4 79 4-92 49-136 (1092)
134 2q5w_D Molybdopterin convertin 78.5 2.8 9.6E-05 25.6 3.9 46 21-79 19-66 (77)
135 1ip9_A BEM1 protein; ubiquitin 76.8 5.8 0.0002 26.1 5.2 34 9-42 13-46 (85)
136 2c7h_A RBBP6, retinoblastoma-b 76.7 9.1 0.00031 25.1 6.2 32 9-40 9-41 (86)
137 1oey_A P67-PHOX, neutrophil cy 75.0 8.1 0.00028 25.1 5.5 47 6-62 5-51 (83)
138 1wgr_A Growth factor receptor- 74.3 7.5 0.00026 26.1 5.4 62 5-74 8-76 (100)
139 2l32_A Small archaeal modifier 72.3 5.4 0.00018 25.0 4.1 49 8-68 2-50 (74)
140 1ryj_A Unknown; beta/alpha pro 67.7 18 0.00061 21.9 7.5 43 21-79 17-59 (70)
141 2daj_A KIAA0977 protein, COBL- 62.9 19 0.00064 23.9 5.3 66 4-77 8-76 (91)
142 2juo_A GA-binding protein alph 62.8 30 0.001 22.8 6.8 65 21-96 6-70 (89)
143 3rpf_C Molybdopterin convertin 62.7 23 0.00079 21.4 7.2 49 21-79 15-63 (74)
144 2kmm_A Guanosine-3',5'-BIS(dip 61.6 15 0.00051 21.8 4.5 29 9-40 3-31 (73)
145 1rws_A Hypothetical protein PF 56.9 4.6 0.00016 25.1 1.5 43 21-79 24-66 (77)
146 4eut_A Serine/threonine-protei 54.6 71 0.0024 24.6 9.9 48 18-74 322-373 (396)
147 1f0z_A THis protein; ubiquitin 52.5 19 0.00066 21.3 3.8 51 14-79 5-55 (66)
148 3ivf_A Talin-1; FERM domain, c 51.9 81 0.0028 24.6 8.4 74 6-92 85-167 (371)
149 2kvr_A Ubiquitin carboxyl-term 50.4 14 0.00049 25.5 3.3 31 21-60 59-91 (130)
150 1wz3_A Autophagy 12B, ATG12B, 48.9 20 0.00069 23.6 3.7 58 5-72 12-74 (96)
151 1vd2_A Protein kinase C, IOTA 48.8 53 0.0018 21.3 6.8 50 5-62 5-54 (89)
152 2g1e_A Hypothetical protein TA 48.1 45 0.0016 20.4 5.7 57 21-79 18-79 (90)
153 3qa8_A MGC80376 protein; kinas 47.1 21 0.00071 31.1 4.5 55 14-76 319-374 (676)
154 2qjl_A URM1, ubiquitin-related 46.7 42 0.0014 21.5 5.0 28 16-43 18-47 (99)
155 1fm0_D Molybdopterin convertin 46.5 46 0.0016 20.0 6.0 47 25-79 23-70 (81)
156 3hhm_A Phosphatidylinositol-4, 46.2 20 0.00068 33.3 4.4 78 6-93 42-128 (1091)
157 3qij_A Protein 4.1; cytoskelet 44.7 27 0.00091 26.8 4.4 76 5-95 16-98 (296)
158 1h4r_A Merlin; FERM, neurofibr 44.1 1E+02 0.0035 23.3 9.7 76 5-94 21-102 (314)
159 2i1j_A Moesin; FERM, coiled-co 43.8 1.5E+02 0.0051 25.1 9.8 77 6-96 4-87 (575)
160 3hk0_A Growth factor receptor- 43.0 38 0.0013 26.0 5.0 35 5-40 7-41 (256)
161 1tyg_B YJBS; alpha beta barrel 42.2 36 0.0012 21.9 4.1 51 14-79 25-76 (87)
162 1ef1_A Moesin; membrane, FERM 41.8 1.1E+02 0.0036 22.9 9.4 76 7-96 2-84 (294)
163 2cu3_A Unknown function protei 41.5 31 0.0011 20.3 3.5 50 14-79 4-53 (64)
164 3w1s_C Ubiquitin-like protein 41.1 72 0.0025 20.7 5.8 60 4-72 6-69 (91)
165 2dhz_A RAP guanine nucleotide 39.8 90 0.0031 21.5 6.7 79 5-92 8-92 (120)
166 4gmv_A RAS-associated and plec 38.6 56 0.0019 25.4 5.4 35 5-40 30-64 (281)
167 1q1o_A Cell division control p 33.5 58 0.002 21.6 4.1 25 17-41 22-46 (98)
168 3onh_A Ubiquitin-activating en 33.3 60 0.002 22.7 4.3 58 21-80 9-73 (127)
169 2ylm_A Ubiquitin carboxyl-term 32.3 86 0.003 26.3 5.9 50 20-73 354-408 (530)
170 4gdk_A Ubiquitin-like protein 32.2 1E+02 0.0035 19.9 6.4 63 4-72 3-69 (91)
171 1y8x_B Ubiquitin-activating en 31.7 39 0.0013 22.3 3.0 57 20-79 7-77 (98)
172 3au4_A Myosin-X; protein-prote 30.8 72 0.0025 26.4 5.2 35 5-40 215-249 (555)
173 3hvz_A Uncharacterized protein 29.0 88 0.003 19.5 4.2 30 8-40 7-36 (78)
174 1wgy_A RAP guanine nucleotide 28.6 95 0.0033 20.8 4.6 36 4-40 7-42 (104)
175 2ylm_A Ubiquitin carboxyl-term 27.5 48 0.0016 27.9 3.5 29 21-58 39-69 (530)
176 1wwt_A Threonyl-tRNA synthetas 26.7 1.1E+02 0.0039 18.6 4.7 36 2-40 5-41 (88)
177 4a6q_A Histone deacetylase com 26.2 59 0.002 23.1 3.3 55 26-80 62-132 (143)
178 3tca_A Amyloid beta A4 precurs 25.9 91 0.0031 22.8 4.5 34 6-40 34-67 (291)
179 3eud_A Protein SHQ1; CS domain 25.4 85 0.0029 21.5 3.9 27 52-78 60-86 (115)
180 4eo0_A Attachment protein G3P; 25.3 63 0.0022 21.7 3.1 24 32-64 58-81 (115)
181 3pvl_A Myosin VIIA isoform 1; 23.2 1.1E+02 0.0039 26.3 5.2 35 5-40 262-296 (655)
182 1jq4_A Methane monooxygenase c 22.6 1E+02 0.0036 19.2 3.8 30 6-36 4-33 (98)
183 2k9x_A Tburm1, uncharacterized 22.0 1.5E+02 0.005 19.7 4.5 43 1-44 1-51 (110)
No 1
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=100.00 E-value=4.3e-34 Score=205.94 Aligned_cols=112 Identities=41% Similarity=0.716 Sum_probs=91.7
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
+|.++|+||+.+|+++.++++++++||++||++|+++||++++.+|+++++|||||+||+|+|++||++|+|+.+++|++
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~ 93 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGA 93 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTC
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCC
Confidence 68999999999999987899999999999999999999999999987789999999999999999999999999999988
Q ss_pred eEEEEEEEccCCccCCCC-CCCCCCCCcEEEec
Q 033172 84 VIIMHVVVQPSLAKTKTD-STKGGCFLASCSLF 115 (125)
Q Consensus 84 ~~tmhlv~~~~~~~kk~~-~~~~~~~~c~C~i~ 115 (125)
+++|||++++.++++++. ..+.++++|||+||
T Consensus 94 v~tmhlVlrl~g~~kkkk~~~~pkk~~C~C~Il 126 (126)
T 1se9_A 94 VTTMHVIIQAPVTEKEKKPKGDPKMNKCVCSVM 126 (126)
T ss_dssp CEEEEEEECCCSSCCCC----------------
T ss_pred cEEEEEEeccCCccccccCCCCCCCCCceEEeC
Confidence 999999999998877621 22238999999997
No 2
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=177.80 Aligned_cols=106 Identities=22% Similarity=0.531 Sum_probs=93.0
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCC-CccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~-~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
.+.++|+||+.+| +..+++|++++||++||++|+++||++ +|.+|.++++|||||+||+|+|++||++|+|+.+++
T Consensus 15 ~~~m~I~vktl~G-~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~-- 91 (125)
T 2gow_A 15 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT-- 91 (125)
T ss_dssp TTCEEEEEECTTS-CEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSE--
T ss_pred CCeEEEEEEeCCC-CEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc--
Confidence 3679999999999 556899999999999999999999999 578776799999999999999999999999998854
Q ss_pred ceEEEEEEEccCCccCCCCCCC----CCCCCcEEEec
Q 033172 83 GVIIMHVVVQPSLAKTKTDSTK----GGCFLASCSLF 115 (125)
Q Consensus 83 ~~~tmhlv~~~~~~~kk~~~~~----~~~~~c~C~i~ 115 (125)
++|||++++.++++++++.+ .++++| |+||
T Consensus 92 --~tlhlv~r~~~~~~~~~~~~~~~~~~~~~C-C~il 125 (125)
T 2gow_A 92 --TVMHLVARETLPEPNSQGQRNREKTGESNC-CVIL 125 (125)
T ss_dssp --EEEEEEECSCCSSSSSCCCCCCCSTTCCCC-CCCC
T ss_pred --eEEEEEecCCCCccccccccccCCCCCCCc-cEeC
Confidence 79999999999888865322 268889 9987
No 3
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.92 E-value=1.4e-24 Score=154.17 Aligned_cols=97 Identities=22% Similarity=0.538 Sum_probs=85.5
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCC-CccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKG-KTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~-~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
++.++|+||+.+| +..+++|++++||++||++|+++||++ +|.+|.++++|||||+||+|+|+.||++|+|+.+++
T Consensus 14 ~~~m~I~vKtl~G-~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~-- 90 (116)
T 1wgh_A 14 ADMINLRLILVSG-KTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKT-- 90 (116)
T ss_dssp SSSEEEEEECSSS-CEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCE--
T ss_pred CCeEEEEEEeCCC-CEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCc--
Confidence 5889999999999 556899999999999999999999999 566655599999999999999999999999987754
Q ss_pred ceEEEEEEEccCCccCCCCCCCC
Q 033172 83 GVIIMHVVVQPSLAKTKTDSTKG 105 (125)
Q Consensus 83 ~~~tmhlv~~~~~~~kk~~~~~~ 105 (125)
++|||++++.++.+++.+...
T Consensus 91 --~tlhLvlr~~~~~~~~~~~~~ 111 (116)
T 1wgh_A 91 --TVMHLVARETLPEPNSQGQRS 111 (116)
T ss_dssp --EEEEEEECSSCSSSCCSSCCC
T ss_pred --eEEEEEccCCCCCCCcccccc
Confidence 799999999999888755443
No 4
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=3.4e-18 Score=114.84 Aligned_cols=84 Identities=15% Similarity=0.165 Sum_probs=71.0
Q ss_pred CCeEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccC--CCCCCCc
Q 033172 4 EELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGEV 80 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~--~i~~gd~ 80 (125)
+..++|.++..+|.. ...+++++++||.+||++|++..| ..+| +++|||||+||.|+|+.+|++| +|.++
T Consensus 5 ~~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~---~~i~--~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~-- 77 (93)
T 1wgd_A 5 SSGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYP---ERPR--PEDQRLIYSGKLLLDHQCLRDLLPKQEKR-- 77 (93)
T ss_dssp SCCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHST---TCCC--TTTCEEEETTEECCSSSCHHHHSCSSSCS--
T ss_pred CcEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhc---CCCC--hHHeEEEECCEECcCcCCHHHHhcCCCCC--
Confidence 577899999988852 224567799999999999999854 2344 8999999999999999999999 99988
Q ss_pred CCceEEEEEEEccCCccC
Q 033172 81 PGGVIIMHVVVQPSLAKT 98 (125)
Q Consensus 81 ~~~~~tmhlv~~~~~~~k 98 (125)
.++||++++.++++
T Consensus 78 ----~~i~lv~~~~gg~~ 91 (93)
T 1wgd_A 78 ----HVLHLVCNVKSGPS 91 (93)
T ss_dssp ----EEEEEECCCCCCCC
T ss_pred ----CEEEEEeCCCCCCC
Confidence 89999999887754
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=8.7e-18 Score=111.61 Aligned_cols=80 Identities=18% Similarity=0.367 Sum_probs=68.0
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
...++|.++..+|..+ .+++++++||.+||++|++. +| +++|||||+||.|+|+.+|++|+| +|
T Consensus 3 ~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrLi~~Gk~L~d~~tL~~~~i-~g--- 68 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAASVSIP---------SEKQRLIYQGRVLQDDKKLQEYNV-GG--- 68 (90)
T ss_dssp CCEEEEEEEETTCCEE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTC-TT---
T ss_pred CcEEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHhCCC---------HHHEEEEECCeECCCCCCHHHcCC-CC---
Confidence 4678899999999665 78999999999999999998 55 999999999999999999999999 77
Q ss_pred CceEEEEEEEccCCccCCC
Q 033172 82 GGVIIMHVVVQPSLAKTKT 100 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~~kk~ 100 (125)
.++||+++++++....
T Consensus 69 ---~~i~l~~~~~~~~~~~ 84 (90)
T 4dwf_A 69 ---KVIHLVERAPPQTHLP 84 (90)
T ss_dssp ---EEEEEEECCCC-----
T ss_pred ---cEEEEEecCCCCCCCC
Confidence 7999999987765543
No 6
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.75 E-value=8.3e-18 Score=109.12 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=66.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
.++|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~----- 68 (79)
T 3phx_B 4 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGLEGVQ---------DDLFWLTFEGKPLEDQLPLGEYGLKPL----- 68 (79)
T ss_dssp CEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTCCTT-----
T ss_pred CEEEEEEeCCCCEE-EEEECCcChHHHHHHHHHhhcCCC---------HHHEEEEECCEECCCCCcHHHCCCCCC-----
Confidence 46788888999665 68999999999999999988 55 999999999999999999999999998
Q ss_pred eEEEEEEEccCC
Q 033172 84 VIIMHVVVQPSL 95 (125)
Q Consensus 84 ~~tmhlv~~~~~ 95 (125)
+++|++++..+
T Consensus 69 -~~l~l~~rl~G 79 (79)
T 3phx_B 69 -STVFMNLRLRG 79 (79)
T ss_dssp -CEEEEEECCBC
T ss_pred -CEEEEEEecCC
Confidence 68999998753
No 7
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.74 E-value=8.8e-18 Score=109.00 Aligned_cols=77 Identities=18% Similarity=0.278 Sum_probs=69.4
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
|+.++|.++..+|+.+ .+++++++||.+||++|+++ +| +++|||+|+|+.|+|++||++|+|.++
T Consensus 1 m~~m~i~vk~~~g~~~-~~~v~~~~tv~~lk~~i~~~~gi~---------~~~qrL~~~G~~L~d~~tl~~~~i~~~--- 67 (79)
T 2uyz_B 1 MEYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE--- 67 (79)
T ss_dssp CCEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCHHHHTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHHCCC---------cccEEEEECCEEeCCCCCHHHcCCCCC---
Confidence 4678999999999665 68999999999999999998 55 899999999999999999999999999
Q ss_pred CceEEEEEEEccCCc
Q 033172 82 GGVIIMHVVVQPSLA 96 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~ 96 (125)
.++|++++..++
T Consensus 68 ---~~i~l~~~~~GG 79 (79)
T 2uyz_B 68 ---DVIEVYQEQTGG 79 (79)
T ss_dssp ---EEEEEEECCCC-
T ss_pred ---CEEEEEEeccCC
Confidence 799999987664
No 8
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=1.6e-17 Score=107.33 Aligned_cols=74 Identities=20% Similarity=0.252 Sum_probs=66.4
Q ss_pred eEEEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 6 LIDIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~-v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
.++|.++..+|+.+..++ +++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip---------~~~qrL~~~g~~L~d~~tL~~~~i~~g---- 68 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE---------PGLQRLFYRGKQMEDGHTLFDYEVRLN---- 68 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTTTTTCCTT----
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC----
Confidence 367888889997654688 99999999999999998 55 999999999999999999999999988
Q ss_pred ceEEEEEEEccC
Q 033172 83 GVIIMHVVVQPS 94 (125)
Q Consensus 83 ~~~tmhlv~~~~ 94 (125)
+++|++++++
T Consensus 69 --~~i~l~~r~~ 78 (78)
T 2faz_A 69 --DTIQLLVRQS 78 (78)
T ss_dssp --CEEEEEECCC
T ss_pred --CEEEEEEeCC
Confidence 7899999864
No 9
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=109.77 Aligned_cols=72 Identities=19% Similarity=0.426 Sum_probs=65.2
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
.+.++|.++..+|..+ .+++++++||++||++|++. +| +++|||||+||.|+|+.+|++|+| +|
T Consensus 15 ~~~m~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i-~g--- 80 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTR-TFIVGAQMNVKEFKEHIAASVSIP---------SEKQRLIYQGRVLQDDKKLQEYNV-GG--- 80 (88)
T ss_dssp CCEEEEEEEETTSCEE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTC-TT---
T ss_pred CCeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHhCCC---------HHHEEEEECCEECCCCCcHHHcCC-CC---
Confidence 4678999999999665 68999999999999999998 55 999999999999999999999999 78
Q ss_pred CceEEEEEEEc
Q 033172 82 GGVIIMHVVVQ 92 (125)
Q Consensus 82 ~~~~tmhlv~~ 92 (125)
.++|+++|
T Consensus 81 ---~~i~lv~R 88 (88)
T 4eew_A 81 ---KVIHLVER 88 (88)
T ss_dssp ---EEEEEEEC
T ss_pred ---cEEEEEEC
Confidence 79999976
No 10
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.73 E-value=1.2e-17 Score=111.41 Aligned_cols=77 Identities=26% Similarity=0.381 Sum_probs=65.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
+|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+| +
T Consensus 2 ~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i~~g------~ 65 (88)
T 4fbj_B 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG------S 65 (88)
T ss_dssp EEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTTTTTCCTT------C
T ss_pred EEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------hhHEEEEECCeECCCCCcHHHcCCCCC------C
Confidence 678888899665 78999999999999999998 55 999999999999999999999999998 7
Q ss_pred EEEEEEccCCccCCC
Q 033172 86 IMHVVVQPSLAKTKT 100 (125)
Q Consensus 86 tmhlv~~~~~~~kk~ 100 (125)
++|++++..++..-.
T Consensus 66 ~l~l~~rl~Gg~~~~ 80 (88)
T 4fbj_B 66 VLHLVLALRGGGGLR 80 (88)
T ss_dssp EEEEECBCC------
T ss_pred EEEEEEECCCCCCCC
Confidence 899999988876543
No 11
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=2.5e-17 Score=109.00 Aligned_cols=80 Identities=24% Similarity=0.281 Sum_probs=70.5
Q ss_pred CCeEEEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172 4 EELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~-~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~ 80 (125)
...++|.++..+|.....+ ++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~gk~L~d~~tL~~~~i~~g-- 73 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR---------PECQRLFYRGKQLENGYTLFDYDVGLN-- 73 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC---------TTTEEEEETTEECCSSSBHHHHTCCTT--
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCeECCCCCCHHHCCCCCC--
Confidence 5778999999988433478 599999999999999998 55 999999999999999999999999988
Q ss_pred CCceEEEEEEEccCCccC
Q 033172 81 PGGVIIMHVVVQPSLAKT 98 (125)
Q Consensus 81 ~~~~~tmhlv~~~~~~~k 98 (125)
.++|+++++.++.+
T Consensus 74 ----~~i~l~~~~~gG~~ 87 (89)
T 1wy8_A 74 ----DIIQLLVRPDSGPS 87 (89)
T ss_dssp ----CEEEEEECCCCSSC
T ss_pred ----CEEEEEEeCCCCCC
Confidence 78999999887754
No 12
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.73 E-value=1.5e-17 Score=109.40 Aligned_cols=77 Identities=26% Similarity=0.403 Sum_probs=69.6
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
+..++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 10 ~~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~--- 76 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG--- 76 (88)
T ss_dssp CCCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCCEEETTEECCTTSBGGGGTCCTT---
T ss_pred CCcEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------HHHEEEEECCeECCCCCcHHHcCCCCC---
Confidence 5678999999999665 78999999999999999998 55 999999999999999999999999998
Q ss_pred CceEEEEEEEccCCc
Q 033172 82 GGVIIMHVVVQPSLA 96 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~ 96 (125)
.++|++++..++
T Consensus 77 ---~~i~l~~rl~GG 88 (88)
T 3dbh_I 77 ---SVLHLVLRLRGG 88 (88)
T ss_dssp ---CEEEECCCCCCC
T ss_pred ---CEEEEEEeCCCC
Confidence 689999987764
No 13
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=3.8e-17 Score=107.55 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=70.2
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
+..++|.++..+|.. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 5 ~~~m~i~Vk~~~g~~-~~~~v~~~~tV~~lK~~i~~~~gi~---------~~~qrL~~~Gk~L~d~~tL~~~~i~~g--- 71 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGS-YAYAINPNSFILGLKQQIEDQQGLP---------KKQQQLEFQGQVLQDWLGLGIYGIQDS--- 71 (87)
T ss_dssp SSSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHHHHTCCC---------TTTEEEEETTEECCSSSBHHHHTCCTT---
T ss_pred CCCEEEEEEcCCCCE-EEEEeCCCChHHHHHHHHHHHhCCC---------hHHEEEEECCEEccCCCCHHHCCCCCC---
Confidence 567899999999954 478999999999999999998 55 999999999999999999999999998
Q ss_pred CceEEEEEEEccCCcc
Q 033172 82 GGVIIMHVVVQPSLAK 97 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~~ 97 (125)
+++|+++++.++.
T Consensus 72 ---~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 72 ---DTLILSKKKGSGP 84 (87)
T ss_dssp ---EEEEEEECSCCCS
T ss_pred ---CEEEEEEeccCCC
Confidence 8999999987763
No 14
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.73 E-value=1.7e-17 Score=114.97 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=62.5
Q ss_pred EEEEEEeCC----CCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172 7 IDIKFRLYD----GSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (125)
Q Consensus 7 v~l~~~~~~----g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~ 80 (125)
+.|++++.+ +. ...+++++++||.+||++|+++ +| +++|||||+||+|+|++||++|+|.+|
T Consensus 16 ati~V~~~~~~~~~~-~~~lev~~~~TV~~lK~kI~~k~gip---------~~qQrLI~~GKiL~D~~TL~~y~I~~g-- 83 (100)
T 1wju_A 16 ATIEVFLPPRLKKDR-KNLLETRLHITGRELRSKIAETFGLQ---------ENYIKIVINKKQLQLGKTLEEQGVAHN-- 83 (100)
T ss_dssp EEEEEECCTTTCCSS-SEEEEEESSSBHHHHHHHHHHHTTCC---------STTCEEEETTEECCTTSBHHHHTCCSS--
T ss_pred EEEEEEecCCCCCCc-EEEEEeCCcCHHHHHHHHHHHHHCcC---------HHHeEEEeCCeECCCCCcHHHcCCCCC--
Confidence 456666766 53 4479999999999999999999 55 999999999999999999999999999
Q ss_pred CCceEEEEEEEccCCccCC
Q 033172 81 PGGVIIMHVVVQPSLAKTK 99 (125)
Q Consensus 81 ~~~~~tmhlv~~~~~~~kk 99 (125)
+++ ++++..+....
T Consensus 84 ----sti-~vl~lrg~~~~ 97 (100)
T 1wju_A 84 ----VKA-MVLELKQSSGP 97 (100)
T ss_dssp ----EEE-EEECCCCCCCS
T ss_pred ----CEE-EEEEECCCCcc
Confidence 778 45555555443
No 15
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=2.4e-17 Score=111.89 Aligned_cols=77 Identities=25% Similarity=0.380 Sum_probs=68.7
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
++.++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+||.|+|+.+|++|+|.+|
T Consensus 20 ~~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~~i~~g--- 86 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE--- 86 (98)
T ss_dssp --CCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTCBSGGGTCCTT---
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHhCCC---------hhHEEEEECCEECCCCCcHHHCCCCCC---
Confidence 4678999999999665 78999999999999999998 55 999999999999999999999999998
Q ss_pred CceEEEEEEEccCCc
Q 033172 82 GGVIIMHVVVQPSLA 96 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~ 96 (125)
.+|||+++..++
T Consensus 87 ---~~i~l~~rl~GG 98 (98)
T 4hcn_B 87 ---STLHLVLRLRGG 98 (98)
T ss_dssp ---EEEEEECBCSCC
T ss_pred ---CEEEEEEecCCC
Confidence 899999998764
No 16
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.72 E-value=3.6e-17 Score=110.89 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=69.9
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CccccCCCCCCCcCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEVPG 82 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~-~tL~~~~i~~gd~~~ 82 (125)
-..++|.++..+| . ..+++++++||.+||++|++. +.+| +++|||+|+||.|+|+ .+|++|+|.++
T Consensus 13 ~~~~~I~Vk~~~~-~-~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~~tL~~ygI~~g---- 79 (94)
T 2kan_A 13 VRKIHVTVKFPSK-Q-FTVEVDRTETVSSLKDKIHIV-----ENTP--IKRMQLYYSGIELADDYRNLNEYGITEF---- 79 (94)
T ss_dssp SCCEEEEEECSSC-E-EEEEECTTCBHHHHHHHHHHH-----SSSC--TTTEEEEETTEEECCTTSBHHHHTCCTT----
T ss_pred CCCEEEEEEcCCc-E-EEEEECCCCcHHHHHHHHHHH-----HCcC--HHHEEEEECCEECCCCcccHHHCCCCCC----
Confidence 3568888998887 4 478999999999999999998 2233 9999999999999999 99999999998
Q ss_pred ceEEEEEEEccCCccC
Q 033172 83 GVIIMHVVVQPSLAKT 98 (125)
Q Consensus 83 ~~~tmhlv~~~~~~~k 98 (125)
.++||++++.++++
T Consensus 80 --stl~lv~r~~gg~~ 93 (94)
T 2kan_A 80 --SEIVVFLKSINRAK 93 (94)
T ss_dssp --EEEEEEECCCSSCC
T ss_pred --CEEEEEEeCCCCCC
Confidence 89999999988754
No 17
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.72 E-value=9.3e-18 Score=115.57 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCeEEEEEEeCCCCe-eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccC--CCCCCCc
Q 033172 4 EELIDIKFRLYDGSD-IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQC--KIPYGEV 80 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~-~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~--~i~~gd~ 80 (125)
+..++|.+|..+|.. ...+++++++||.+||++|++++| ..+| +++|||||+||+|+|+.||++| +|.++
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~---g~pp--~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~-- 93 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYP---SKPL--TKDQRLVYSGRLLPDHLQLKDILRKQDEY-- 93 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHST---TCCC--TTTCCEEETTEEECTTSBTHHHHTTTCSE--
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhc---CCCC--hhhEEEEECCEECCCCCCHHHHhcCCCCC--
Confidence 467999999998862 236888999999999999999865 1222 6999999999999999999999 99988
Q ss_pred CCceEEEEEE
Q 033172 81 PGGVIIMHVV 90 (125)
Q Consensus 81 ~~~~~tmhlv 90 (125)
.+|||+
T Consensus 94 ----~tihLv 99 (99)
T 2kdb_A 94 ----HMVHLV 99 (99)
T ss_dssp ----EEEEEC
T ss_pred ----CEEEeC
Confidence 899985
No 18
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.72 E-value=4.3e-17 Score=106.68 Aligned_cols=81 Identities=25% Similarity=0.366 Sum_probs=65.3
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
..++|.++..+|+.+ .+++++++||++||++|++.+. .+.+| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~~m~i~vk~~~g~~~-~~~v~~~~TV~~lK~~i~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~~~i~~g------ 72 (85)
T 2wyq_A 4 MAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEK------ 72 (85)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHHHC--TTTCC--GGGEEEEETTEECCTTSBGGGGCCCTT------
T ss_pred ceEEEEEEECCCCEE-EEEECCCCCHHHHHHHHHhhcc--ccCCC--HHHeEEEECCEECcCCCCHHHcCCCCC------
Confidence 357888888989655 7899999999999999999621 11233 999999999999999999999999998
Q ss_pred EEEEEEEccCCc
Q 033172 85 IIMHVVVQPSLA 96 (125)
Q Consensus 85 ~tmhlv~~~~~~ 96 (125)
+++|++.+++.+
T Consensus 73 ~~i~l~~~~~~~ 84 (85)
T 2wyq_A 73 NFVVVMVTKTKA 84 (85)
T ss_dssp SEEEEEEC----
T ss_pred CEEEEEEcCCCC
Confidence 689999877643
No 19
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3e-17 Score=106.23 Aligned_cols=76 Identities=21% Similarity=0.353 Sum_probs=67.6
Q ss_pred CCCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (125)
Q Consensus 3 ~~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~ 80 (125)
+.+.++|+++..+|..+ .+++++++||++||++|++. +| +++|||+|+||.|+|+.+|++|+|.+|
T Consensus 4 ~~~~m~i~vk~~~g~~~-~~~v~~~~tV~~LK~~i~~~~~i~---------~~~qrL~~~gk~L~d~~tL~~~~i~~g-- 71 (81)
T 2dzi_A 4 GSSGMQLTVKALQGREC-SLQVPEDELVSTLKQLVSEKLNVP---------VRQQRLLFKGKALADGKRLSDYSIGPN-- 71 (81)
T ss_dssp SSSSEEEEEEETTSCEE-EEEECSSCBHHHHHHHHHHHTCCC---------TTTCEEEETTEECCTTSBGGGGTCCSS--
T ss_pred CCCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------HHHEEEEECCeECCCCCcHHHcCCCCC--
Confidence 35778999998888554 68999999999999999998 44 899999999999999999999999988
Q ss_pred CCceEEEEEEEccC
Q 033172 81 PGGVIIMHVVVQPS 94 (125)
Q Consensus 81 ~~~~~tmhlv~~~~ 94 (125)
.++|++++++
T Consensus 72 ----~~i~l~~~~~ 81 (81)
T 2dzi_A 72 ----SKLNLVVKPL 81 (81)
T ss_dssp ----BCCEEECCCC
T ss_pred ----CEEEEEEeCC
Confidence 6899988764
No 20
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2e-17 Score=117.71 Aligned_cols=80 Identities=21% Similarity=0.227 Sum_probs=69.4
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
+..++|++++..+.....++|+++.||++||++++++ .| +++|||||+||+|+|++||++|||++|
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP---------~e~qrLIy~GKiLKD~eTL~~~gIk~g--- 80 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP---------HSVLQIRYSGKILKNNETLVQHGVKPQ--- 80 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC---------TTTEEEEETTEEECSSCCHHHHSCCSS---
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC---------hHHEEEEECCeEcCCcchHHHcCCCCC---
Confidence 4668888886543344578999999999999999999 55 999999999999999999999999998
Q ss_pred CceEEEEEEEccCCccC
Q 033172 82 GGVIIMHVVVQPSLAKT 98 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~~k 98 (125)
.||||+++...|..
T Consensus 81 ---~TIhLvi~s~~p~~ 94 (118)
T 2daf_A 81 ---EIVQVEIFSTNPDL 94 (118)
T ss_dssp ---CEEEEEEEESCTTT
T ss_pred ---CEEEEEEecCCCcc
Confidence 79999999877755
No 21
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.71 E-value=4.8e-17 Score=109.00 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=66.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 2 m~i~vk~~~g~~~-~~~v~~~~TV~~LK~~i~~~~gip---------~~~qrL~~~G~~L~d~~tL~~~~i~~~------ 65 (96)
T 3k9o_B 2 MQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------ 65 (96)
T ss_dssp CEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------
T ss_pred cEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhhhCCC---------hhHEEEEECCEECCCCCcHHHcCCCCC------
Confidence 4688888999655 78999999999999999998 55 999999999999999999999999988
Q ss_pred EEEEEEEccCCccCCC
Q 033172 85 IIMHVVVQPSLAKTKT 100 (125)
Q Consensus 85 ~tmhlv~~~~~~~kk~ 100 (125)
.++|++++..++.+..
T Consensus 66 ~~i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 66 STLHLVLRLRGYADLR 81 (96)
T ss_dssp CEEEEEECCCC-----
T ss_pred CEEEEEEEcCCCCccc
Confidence 6899999998887654
No 22
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.71 E-value=5.1e-17 Score=108.53 Aligned_cols=74 Identities=23% Similarity=0.393 Sum_probs=67.4
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
...++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 15 ~~~m~i~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g--- 81 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE--- 81 (91)
T ss_dssp CCSEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTCBTGGGTCCTT---
T ss_pred CCeEEEEEEeCCCCEE-EEEECCCCCHHHHHHHHHhhhCCC---------hhhEEEEECCeECCCcCcHHHCCCCCC---
Confidence 4778999999999665 78999999999999999998 55 999999999999999999999999999
Q ss_pred CceEEEEEEEcc
Q 033172 82 GGVIIMHVVVQP 93 (125)
Q Consensus 82 ~~~~tmhlv~~~ 93 (125)
.++|++++.
T Consensus 82 ---~~i~l~~rl 90 (91)
T 3v6c_B 82 ---STLHLVLRL 90 (91)
T ss_dssp ---CEEEEECCC
T ss_pred ---CEEEEEEec
Confidence 689999875
No 23
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=5.1e-17 Score=105.82 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=68.2
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
..++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 2 s~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~i~---------~~~qrL~~~g~~L~d~~tL~~~~i~~~---- 67 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKW---- 67 (85)
T ss_dssp -CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTGGGTCCTT----
T ss_pred CeEEEEEEcCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCCHHHcCCCCC----
Confidence 457889999999655 78999999999999999998 55 999999999999999999999999988
Q ss_pred ceEEEEEEEccCCcc
Q 033172 83 GVIIMHVVVQPSLAK 97 (125)
Q Consensus 83 ~~~tmhlv~~~~~~~ 97 (125)
.++|++++..++.
T Consensus 68 --~~l~l~~r~~GG~ 80 (85)
T 3mtn_B 68 --STLFLLLRLRGGG 80 (85)
T ss_dssp --CEEEEECCCCCC-
T ss_pred --CEEEEEEECcCCC
Confidence 6899999987764
No 24
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.71 E-value=4.3e-17 Score=111.75 Aligned_cols=73 Identities=11% Similarity=0.178 Sum_probs=64.9
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
+.-++|.++...|+.+ .++++|++||.+||++|+++ +++| +++|||||+||+|+|..||++|+|.+|
T Consensus 19 ~~mIqI~Vk~~~Gkk~-~v~v~p~DTI~~LK~~I~~k-----~Gip--~~qQrLif~Gk~LkD~~TL~dY~I~dg----- 85 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKV-RVKCLGEDSVGDFKKVLSLQ-----IGTQ--PNKIVLQKGGSVLKDHISLEDYEVHDQ----- 85 (93)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHH-----HTCC--GGGEEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred CceEEEEEECCCCCEE-EEEECCcCHHHHHHHHHHHH-----hCCC--HHHEEEEeCCEEccCcCCHHHcCCCCC-----
Confidence 5778999999999766 79999999999999999998 2333 999999999999999999999999999
Q ss_pred eEEEEEE
Q 033172 84 VIIMHVV 90 (125)
Q Consensus 84 ~~tmhlv 90 (125)
+++||.
T Consensus 86 -stLhL~ 91 (93)
T 3plu_A 86 -TNLELY 91 (93)
T ss_dssp -CEEEEE
T ss_pred -CEEEEE
Confidence 789985
No 25
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.71 E-value=7.2e-17 Score=102.72 Aligned_cols=73 Identities=27% Similarity=0.423 Sum_probs=64.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
+|+++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+| +
T Consensus 2 ~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~~i~---------~~~q~L~~~g~~L~d~~tL~~~~i~~g------~ 65 (76)
T 1ndd_A 2 LIKVKTLTGKEI-EIDIEPTDKVERIKERVEEKEGIP---------PQQQRLIYSGKQMNDEKTAADYKILGG------S 65 (76)
T ss_dssp EEEEECTTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBGGGGTCCTT------C
T ss_pred EEEEECCCCCEE-EEEECCCChHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence 577888888554 78999999999999999998 55 999999999999999999999999998 6
Q ss_pred EEEEEEccCCc
Q 033172 86 IMHVVVQPSLA 96 (125)
Q Consensus 86 tmhlv~~~~~~ 96 (125)
++|++++..++
T Consensus 66 ~i~l~~~~~GG 76 (76)
T 1ndd_A 66 VLHLVLALRGG 76 (76)
T ss_dssp EEEEEECCC--
T ss_pred EEEEEEeCCCC
Confidence 89999987664
No 26
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.71 E-value=3.8e-17 Score=113.24 Aligned_cols=72 Identities=17% Similarity=0.240 Sum_probs=65.7
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
++.++|.++...|+.+ .+++++++||.+||++|+++ +| +++|||||+||+|+|+.||++|+|.++
T Consensus 26 ~~mm~I~VKtl~Gk~i-~lev~p~dTV~~lK~~Ia~k~Gip---------~~qQrLi~~Gk~L~D~~TL~dygI~~g--- 92 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKV-RVKCNTDDTIGDLKKLIAAQTGTR---------WNKIVLKKWYTIFKDHVSLGDYEIHDG--- 92 (100)
T ss_dssp CCEEEEEEECSSSSCE-EEEEETTSBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCSSCBHHHHTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------HHHEEEEECCEECCCCCCHHHcCCCCC---
Confidence 5669999999989665 68999999999999999999 55 999999999999999999999999998
Q ss_pred CceEEEEEEE
Q 033172 82 GGVIIMHVVV 91 (125)
Q Consensus 82 ~~~~tmhlv~ 91 (125)
.++||+.
T Consensus 93 ---stlhL~~ 99 (100)
T 1uh6_A 93 ---MNLELYY 99 (100)
T ss_dssp ---EEEEEEC
T ss_pred ---CEEEEEe
Confidence 7899874
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.70 E-value=4.6e-17 Score=106.21 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=65.9
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
.++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 3 ~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~~ip---------~~~qrL~~~g~~L~d~~tL~~~~i~~~----- 67 (85)
T 3n3k_B 3 HMRIVVKTLMGRTI-ILEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIHNH----- 67 (85)
T ss_dssp -CEEEEECGGGCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETBEECCTTCBTTTTTCCTT-----
T ss_pred eEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------HHHEEEEECCeECCCCCCHHHCCCCCC-----
Confidence 56788888888654 78999999999999999998 55 999999999999999999999999998
Q ss_pred eEEEEEEEccCCcc
Q 033172 84 VIIMHVVVQPSLAK 97 (125)
Q Consensus 84 ~~tmhlv~~~~~~~ 97 (125)
.++|++++..++.
T Consensus 68 -~~i~l~~rl~GG~ 80 (85)
T 3n3k_B 68 -SALYLLLKLRGGG 80 (85)
T ss_dssp -CEEEEEECCC---
T ss_pred -CEEEEEEeccCCC
Confidence 6899999988764
No 28
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.70 E-value=1.1e-16 Score=107.73 Aligned_cols=81 Identities=19% Similarity=0.332 Sum_probs=70.7
Q ss_pred CCCCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CccccCCCCCCCc
Q 033172 2 PDEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGEV 80 (125)
Q Consensus 2 ~~~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~-~tL~~~~i~~gd~ 80 (125)
++++.++|.++..+|.. ..+++++++||.+||++|++.. +++|||||+||.|+|+ .+|++|+|.+|
T Consensus 3 ~~~~~m~i~Vk~~~g~~-~~~~v~~~~TV~~LK~~i~~~~----------~~~qrLi~~Gk~L~D~~~tL~~y~i~~g-- 69 (95)
T 1wia_A 3 SGSSGINVRLKFLNDTE-ELAVARPEDTVGTLKSKYFPGQ----------ESQMKLIYQGRLLQDPARTLSSLNITNN-- 69 (95)
T ss_dssp CCCCSEEEEEEETTTEE-EEEEECSSSBHHHHHHHHSSST----------TTTCEEEETTEECCCSSCBTTTTTCCTT--
T ss_pred CCCCeEEEEEEeCCCCE-EEEEECCCCcHHHHHHHHHhhC----------cCcEEEEECCEEccCCcCCHHHcCCCCC--
Confidence 45788999999999955 4789999999999999999883 5899999999999999 99999999998
Q ss_pred CCceEEEEEEEccCCccCC
Q 033172 81 PGGVIIMHVVVQPSLAKTK 99 (125)
Q Consensus 81 ~~~~~tmhlv~~~~~~~kk 99 (125)
.+|||+++.+.++..
T Consensus 70 ----~~i~l~~~~~~~~~~ 84 (95)
T 1wia_A 70 ----CVIHCHRSPPGAAVS 84 (95)
T ss_dssp ----EEEEEECCCCCCCCC
T ss_pred ----CEEEEEECCCCCCCC
Confidence 899999987665443
No 29
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.2e-17 Score=111.33 Aligned_cols=76 Identities=22% Similarity=0.480 Sum_probs=63.2
Q ss_pred EEEEEEeCCCCeeeeEE--eCCcchHHHHHHHH-HhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCC-CCCCcCC
Q 033172 7 IDIKFRLYDGSDIGPFR--YSSASTVDMLKQRI-VSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEVPG 82 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~--v~~~~TV~~lK~~I-~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i-~~gd~~~ 82 (125)
++|.+|..+|..+ .++ +++++||.+||++| ++. +++| +++|||||+||+|+|+.||++|+| ++|
T Consensus 2 mqI~VKtl~g~~~-~i~v~v~~~~TV~~lK~~I~~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~~~---- 69 (87)
T 2lxa_A 2 VHLTLKKIQAPKF-SIEHDFSPSDTILQIKQHLISEE-----KASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN---- 69 (87)
T ss_dssp CEEEEEECSSSCE-ECCEECCTTCBHHHHHHHHHHTT-----SCSS--STTEEEEETTEECCTTCBHHHHCCCGGG----
T ss_pred EEEEEEcCCCCEE-EEEEcCCCCCcHHHHHHHHHHHh-----cCCC--hHHEEEEECCEECcCcCCHHHcCCCCCC----
Confidence 5788899999654 455 44999999999999 665 2334 999999999999999999999999 567
Q ss_pred ceEEEEEEEccCCc
Q 033172 83 GVIIMHVVVQPSLA 96 (125)
Q Consensus 83 ~~~tmhlv~~~~~~ 96 (125)
+++||+.+++-.
T Consensus 70 --stl~v~~~~~~~ 81 (87)
T 2lxa_A 70 --STITVMIKPNLE 81 (87)
T ss_dssp --CEEEEEECCCCC
T ss_pred --CEEEEEcCCCcc
Confidence 789999988754
No 30
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.70 E-value=7.4e-17 Score=110.95 Aligned_cols=78 Identities=21% Similarity=0.419 Sum_probs=64.5
Q ss_pred CCeEEEEEEeCCCCee-eeEEeCCcchHHHHHHHH-HhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCC-CCCCc
Q 033172 4 EELIDIKFRLYDGSDI-GPFRYSSASTVDMLKQRI-VSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKI-PYGEV 80 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~-~~~~v~~~~TV~~lK~~I-~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i-~~gd~ 80 (125)
+..++|.++..+|..+ ..+++++++||++||++| ++. +.+| +++|||||+||.|+|+.+|++|+| ++|
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dy~I~~~g-- 87 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEE-----KASH--ISEIKLLLKGKVLHDNLFLSDLKVTPAN-- 87 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTT-----SCSC--GGGEEEEETTEEECTTCBGGGSCCBTTB--
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHh-----cCCC--hhhEEEEECCEECcCcCCHHHcCcCCCC--
Confidence 4778999999999654 234667999999999999 544 1334 999999999999999999999999 888
Q ss_pred CCceEEEEEEEccC
Q 033172 81 PGGVIIMHVVVQPS 94 (125)
Q Consensus 81 ~~~~~tmhlv~~~~ 94 (125)
.++|++++.|
T Consensus 88 ----~ti~lmvskp 97 (98)
T 4a20_A 88 ----STITVMIKPN 97 (98)
T ss_dssp ----CEEEEEECCC
T ss_pred ----CEEEEEEeCC
Confidence 6899988765
No 31
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.70 E-value=1.2e-16 Score=101.61 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=65.4
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
+|+++..+|..+ .+++++++||.+||++|++. +| +++|||+|.|+.|+|+.+|++|++.+| .
T Consensus 2 ~i~vk~~~g~~~-~i~v~~~~tv~~lK~~i~~~~~i~---------~~~q~L~~~g~~L~d~~tL~~~~i~~g------~ 65 (76)
T 3a9j_A 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQRE------S 65 (76)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTGGGTCCTT------C
T ss_pred EEEEEcCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEEECCeECCCCCcHHHcCCCCC------C
Confidence 577888888554 78999999999999999998 55 899999999999999999999999988 6
Q ss_pred EEEEEEccCCc
Q 033172 86 IMHVVVQPSLA 96 (125)
Q Consensus 86 tmhlv~~~~~~ 96 (125)
++|++++..++
T Consensus 66 ~i~l~~~~~GG 76 (76)
T 3a9j_A 66 TLHLVLRLRGG 76 (76)
T ss_dssp EEEEEECCCCC
T ss_pred EEEEEEeCCCC
Confidence 89999998764
No 32
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.70 E-value=3.5e-17 Score=108.98 Aligned_cols=79 Identities=19% Similarity=0.126 Sum_probs=64.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
.++|.++..+|+.+ .+++++++||++||++|++. +.+| +++|||+|+|+.|+|+.+|++|+|.+| +
T Consensus 4 ~m~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~~I~~g------~ 69 (88)
T 2hj8_A 4 PLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGL-----EGVQ--DDLFWLTFEGKPLEDQLPLGEYGLKPL------S 69 (88)
T ss_dssp EEEEEEEETTSCEE-EEEEESSSBHHHHHHHHHHH-----TCSC--TTTEEEESSSSCCCTTSBHHHHHCSTT------C
T ss_pred cEEEEEECCCCCEE-EEEECCCCcHHHHHHHHHHH-----hCCC--hhHEEEEECCEECCCCCcHHHcCCCCC------C
Confidence 57788888888554 78999999999999999998 2233 999999999999999999999999998 6
Q ss_pred EEEEEEccCCccC
Q 033172 86 IMHVVVQPSLAKT 98 (125)
Q Consensus 86 tmhlv~~~~~~~k 98 (125)
++|++.++.++..
T Consensus 70 ~i~l~~~~~gg~~ 82 (88)
T 2hj8_A 70 TVFMNLRLRGGLE 82 (88)
T ss_dssp EEEEEEC------
T ss_pred EEEEEEEcCCCcc
Confidence 8999999877653
No 33
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.69 E-value=1.7e-16 Score=101.71 Aligned_cols=71 Identities=30% Similarity=0.383 Sum_probs=63.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
.++|+++. +|.. ..+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 4 ~m~i~vk~-~g~~-~~~~v~~~~tV~~LK~~i~~~~~i~---------~~~qrL~~~gk~L~d~~tL~~~~i~~g----- 67 (77)
T 2bwf_A 4 SLNIHIKS-GQDK-WEVNVAPESTVLQFKEAINKANGIP---------VANQRLIYSGKILKDDQTVESYHIQDG----- 67 (77)
T ss_dssp EEEEEEEE-TTEE-EEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred EEEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHHHhCCC---------HHHEEEEECCeEcCCCCCHHHcCCCCC-----
Confidence 37888888 7744 478999999999999999998 55 999999999999999999999999998
Q ss_pred eEEEEEEEcc
Q 033172 84 VIIMHVVVQP 93 (125)
Q Consensus 84 ~~tmhlv~~~ 93 (125)
.++|++.++
T Consensus 68 -~~i~l~~~~ 76 (77)
T 2bwf_A 68 -HSVHLVKSQ 76 (77)
T ss_dssp -CEEEEEECC
T ss_pred -CEEEEEEcC
Confidence 689998765
No 34
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.69 E-value=8.3e-17 Score=109.30 Aligned_cols=76 Identities=18% Similarity=0.291 Sum_probs=68.9
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
+.++|.++..+|+.+ .+++++++||.+||++|+++ +| +++|||||+|+.|+|+.||++|+|.++
T Consensus 20 ~~m~I~Vk~~~g~~~-~l~v~~~~tv~~lK~~i~~~~gip---------~~~qrLif~Gk~L~d~~tl~dy~i~~g---- 85 (97)
T 1wyw_B 20 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE---- 85 (97)
T ss_dssp CEEEEEEECTTCCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCHHHHTCCTT----
T ss_pred CcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCCC---------hhhEEEEECCeEcCCCCCHHHCCCCCC----
Confidence 458999999999665 68999999999999999998 55 899999999999999999999999999
Q ss_pred ceEEEEEEEccCCc
Q 033172 83 GVIIMHVVVQPSLA 96 (125)
Q Consensus 83 ~~~tmhlv~~~~~~ 96 (125)
.++|++++..++
T Consensus 86 --~~I~l~~~~~GG 97 (97)
T 1wyw_B 86 --DVIEVYQEQTGG 97 (97)
T ss_dssp --CEEEEEESSSCC
T ss_pred --CEEEEEEecCCC
Confidence 689999987664
No 35
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.69 E-value=7.7e-17 Score=107.25 Aligned_cols=73 Identities=25% Similarity=0.347 Sum_probs=64.9
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCee-cCCCCccccCCCCCCCcC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKI-LENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~-L~D~~tL~~~~i~~gd~~ 81 (125)
.-..|.++..+|+.+ .+++++++||++||++|++. +| +++|||||+|+. |+|+.+|++|+|.+|
T Consensus 9 ~~~~i~vk~l~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~lL~D~~tL~~y~I~~g--- 75 (84)
T 2kk8_A 9 SHMKFLVENLNGSSF-ELEVDYRDTLLVVKQKIERSQHIP---------VSKQTLIVDGIVILREDLTVEQCQIVPT--- 75 (84)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCCSSSBHHHHTCCTT---
T ss_pred CceEEEEEecCCcEE-EEEECCCChHHHHHHHHHHHHCcC---------hHHEEEEECCEEecCCcCCHHHcCCCCC---
Confidence 345678888999665 78999999999999999999 55 999999999999 999999999999988
Q ss_pred CceEEEEEEEcc
Q 033172 82 GGVIIMHVVVQP 93 (125)
Q Consensus 82 ~~~~tmhlv~~~ 93 (125)
+++|++++|
T Consensus 76 ---s~i~lv~~p 84 (84)
T 2kk8_A 76 ---SDIQLEVSS 84 (84)
T ss_dssp ---SCEEEEECC
T ss_pred ---CEEEEEEcC
Confidence 689998875
No 36
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=6.1e-17 Score=111.80 Aligned_cols=78 Identities=23% Similarity=0.435 Sum_probs=63.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEE
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVII 86 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~t 86 (125)
++|.++..+|..+ .+++++++||.+||++|++.. .+| +++|||||+||.|+|+.+|++|+|.+| .+
T Consensus 2 m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~-----gip--~~~QrLi~~Gk~L~D~~tL~~~~i~~g------~~ 67 (106)
T 3m62_B 2 VSLTFKNFKKEKV-PLDLEPSNTILETKTKLAQSI-----SCE--ESQIKLIYSGKVLQDSKTVSECGLKDG------DQ 67 (106)
T ss_dssp -CEEEECTTCCEE-EECCCTTSBHHHHHHHHHHTT-----TSC--GGGCEEEETTEECCTTSBTTTTTCCTT------CE
T ss_pred EEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHH-----CCC--hhhEEEEECCEECCCcCCHHHcCCCCC------CE
Confidence 4678888889654 789999999999999999982 233 899999999999999999999999999 68
Q ss_pred EEEEEccCCccC
Q 033172 87 MHVVVQPSLAKT 98 (125)
Q Consensus 87 mhlv~~~~~~~k 98 (125)
+|++++.+.+.+
T Consensus 68 i~lv~~~~~~~~ 79 (106)
T 3m62_B 68 VVFMVSQKKSTK 79 (106)
T ss_dssp EEEECCC-----
T ss_pred EEEEEcCCCCCC
Confidence 999998655443
No 37
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=1.9e-16 Score=106.85 Aligned_cols=81 Identities=26% Similarity=0.350 Sum_probs=66.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm 87 (125)
+|.++..+|..+ .+++++++||++||++|++.+. .+.+| +++|||||+||.|+|+.+|++|+|.+| .++
T Consensus 2 ~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~~--~~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------~~i 70 (95)
T 1uel_A 2 QVTLKTLQQQTF-KIDIDPEETVKALKEKIESEKG--KDAFP--VAGQKLIYAGKILNDDTALKEYKIDEK------NFV 70 (95)
T ss_dssp EEEEEETTCCEE-EEECCTTSBHHHHHHHHHHHHC--TTTCC--TTTEEEEETTEECCTTSBGGGGTCCSS------SEE
T ss_pred EEEEEeCCCCEE-EEEECCCCHHHHHHHHHHhhcc--cCCCC--hhhEEEEECCEECCCcCcHHHCCCCCC------CEE
Confidence 577888888655 7899999999999999999721 11233 999999999999999999999999998 689
Q ss_pred EEEEccCCccCC
Q 033172 88 HVVVQPSLAKTK 99 (125)
Q Consensus 88 hlv~~~~~~~kk 99 (125)
|++++.+.+.+.
T Consensus 71 ~l~~~~~~~~~~ 82 (95)
T 1uel_A 71 VVMVTKPKAVST 82 (95)
T ss_dssp EEEESSCCCCCC
T ss_pred EEEEeCCCCCCC
Confidence 998886655443
No 38
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.3e-16 Score=109.22 Aligned_cols=77 Identities=23% Similarity=0.417 Sum_probs=69.2
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
.+.++|.++..+| .+ .+++++++||.+||++|++. +| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 20 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~ygI~~g--- 85 (100)
T 1yqb_A 20 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQRFKAH---------PDQLVLIFAGKILKDPDSLAQCGVRDG--- 85 (100)
T ss_dssp TTEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBHHHHTCCTT---
T ss_pred CCeEEEEEEcCCC-cE-EEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHCCCCCC---
Confidence 4678999999988 45 78999999999999999998 55 999999999999999999999999988
Q ss_pred CceEEEEEEEccCCcc
Q 033172 82 GGVIIMHVVVQPSLAK 97 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~~ 97 (125)
.++||+++..+++
T Consensus 86 ---stI~l~~r~~~~p 98 (100)
T 1yqb_A 86 ---LTVHLVIKRQHRA 98 (100)
T ss_dssp ---CEEEEEECCCCSC
T ss_pred ---CEEEEEEcCCCCC
Confidence 6899999877654
No 39
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.3e-16 Score=106.38 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=63.5
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
..+|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+||.|+|+.+|++|+|.+|
T Consensus 9 ~~~i~v~~~~G~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g----- 73 (88)
T 1sif_A 9 GLQLFIKTLTGKTF-TVEMEPSDTIENLKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 73 (88)
T ss_dssp -CEEEEEETTSCEE-EEECCTTSBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBSGGGTCCTT-----
T ss_pred ceEEEEEeCCCCEE-EEEECCCChHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCcHHHcCCCCC-----
Confidence 35788899999655 78999999999999999998 55 999999999999999999999999988
Q ss_pred eEEEEEEEccCCc
Q 033172 84 VIIMHVVVQPSLA 96 (125)
Q Consensus 84 ~~tmhlv~~~~~~ 96 (125)
+++|+++++.++
T Consensus 74 -~~i~l~~r~~GG 85 (88)
T 1sif_A 74 -STLHLVLRLRGG 85 (88)
T ss_dssp -CEEEEEC-----
T ss_pred -CEEEEEEeCCCC
Confidence 689999998776
No 40
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.68 E-value=7.4e-17 Score=108.54 Aligned_cols=79 Identities=24% Similarity=0.283 Sum_probs=68.2
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
++.++|+++.. |..+ .+++++++||.+||++|++. +.+| +++|||+|.|+.|+|+.+|++|+|.++
T Consensus 15 ~~~m~i~Vk~~-g~~~-~~~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~Gk~L~D~~tL~~~gi~~g----- 80 (96)
T 1wx8_A 15 SRIIRVSVKTP-QDCH-EFFLAENSNVRRFKKQISKY-----LHCN--ADRLVLIFTGKILRDQDILSQRGILDG----- 80 (96)
T ss_dssp SCEEEEEEECS-SSEE-EEEEETTCCHHHHHHHHHHH-----TCSC--TTTBCCEETTEECCTTSCHHHHTCCTT-----
T ss_pred CCcEEEEEEEC-CeEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEECCCcCCHHHCCCCCC-----
Confidence 46788888888 7554 78999999999999999998 1222 899999999999999999999999998
Q ss_pred eEEEEEEEccCCcc
Q 033172 84 VIIMHVVVQPSLAK 97 (125)
Q Consensus 84 ~~tmhlv~~~~~~~ 97 (125)
.+|||++++.+++
T Consensus 81 -~~i~l~~~~~~g~ 93 (96)
T 1wx8_A 81 -STVHVVVRSHSGP 93 (96)
T ss_dssp -EEEECCBCCSSCS
T ss_pred -CEEEEEEeCCCCC
Confidence 8999999877653
No 41
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.68 E-value=2.2e-16 Score=109.81 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=68.4
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
..++|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+||.|+|+.+|++|+|.++
T Consensus 34 ~~m~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~~gI~~g---- 99 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 99 (111)
T ss_dssp GCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTTTTTCCTT----
T ss_pred ccEEEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHHhCCC---------hHHEEEEECCEECCCCCcHHHCCCCCC----
Confidence 468899999999665 78999999999999999998 55 999999999999999999999999998
Q ss_pred ceEEEEEEEccCCc
Q 033172 83 GVIIMHVVVQPSLA 96 (125)
Q Consensus 83 ~~~tmhlv~~~~~~ 96 (125)
+++|++++..++
T Consensus 100 --s~I~l~~rl~GG 111 (111)
T 3vdz_A 100 --STLHLVLRLRGG 111 (111)
T ss_dssp --CEEEEEECCCC-
T ss_pred --CEEEEEEecCCC
Confidence 789999998764
No 42
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=4.7e-16 Score=110.66 Aligned_cols=79 Identities=23% Similarity=0.342 Sum_probs=65.1
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
+..++|.++.. |..+ .+++++++||.+||++|++. +| +++|||||+||.|+|+.+|++|+|.+|
T Consensus 30 ~~~m~I~Vk~~-g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~dygI~~g--- 95 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKE-EFAVPENSSVQQFKEAISKRFKSQ---------TDQLVLIFAGKILKDQDTLIQHGIHDG--- 95 (125)
T ss_dssp CCCEEEEEECS-SCEE-EEEECTTCCHHHHHHHHHHHHCSC---------SSSEEEEETTEEESTTSCGGGTTCSSS---
T ss_pred CCcEEEEEEeC-CeEE-EEEECCCCcHHHHHHHHHHHHCcC---------cceEEEEECCEEcCCCCCHHHcCCCCC---
Confidence 35688888888 7554 78999999999999999998 55 999999999999999999999999988
Q ss_pred CceEEEEEEEccCCccCC
Q 033172 82 GGVIIMHVVVQPSLAKTK 99 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~~kk 99 (125)
.+|||+.+..++...
T Consensus 96 ---stI~lv~~~~gg~~~ 110 (125)
T 1j8c_A 96 ---LTVHLVIKRDPNSSS 110 (125)
T ss_dssp ---EEEEEEEC-------
T ss_pred ---CEEEEEeccCCCCCC
Confidence 899999998776543
No 43
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=7.1e-16 Score=105.94 Aligned_cols=78 Identities=23% Similarity=0.409 Sum_probs=69.2
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
...++|+++..+| .+ .+++++++||.+||++|++. +| +++|||||+||.|+|+.+|++|+|.++
T Consensus 15 ~~~m~I~Vk~~~g-~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gi~~g--- 80 (106)
T 1wx7_A 15 PHLIKVTVKTPKD-KE-DFSVTDTCTIQQLKEEISQRFKAH---------PDQLVLIFAGKILKDPDSLAQCGVRDG--- 80 (106)
T ss_dssp SSEEEEEEECSSC-EE-EEEEETTCCHHHHHHHHHHHHTCC---------TTTEEEEETTEECCTTSCHHHHTCCTT---
T ss_pred CceEEEEEEeCCC-cE-EEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHcCCCCC---
Confidence 3568888988888 44 78999999999999999998 55 899999999999999999999999988
Q ss_pred CceEEEEEEEccCCccC
Q 033172 82 GGVIIMHVVVQPSLAKT 98 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~~k 98 (125)
.+|||+++..++..
T Consensus 81 ---~~i~l~~~~~~~~~ 94 (106)
T 1wx7_A 81 ---LTVHLVIKRQHRAM 94 (106)
T ss_dssp ---EEEEEEECCCCCSC
T ss_pred ---CEEEEEEcCCCCCC
Confidence 79999998776654
No 44
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.66 E-value=3.7e-16 Score=109.01 Aligned_cols=81 Identities=17% Similarity=0.310 Sum_probs=69.8
Q ss_pred CeEEEEEEeCC----------CCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCC
Q 033172 5 ELIDIKFRLYD----------GSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCK 74 (125)
Q Consensus 5 ~~v~l~~~~~~----------g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~ 74 (125)
..|+|+++..+ | ....+++++++||.+||++|++. +.+| +++|||+|+|+.|+|+.+|++|+
T Consensus 24 ~~i~l~V~~p~~~~~~~~~L~G-~~~~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~ 95 (115)
T 1we7_A 24 GPVSIKVQVPNMQDKTEWKLNG-QGLVFTLPLTDQVSVIKVKIHEA-----TGMP--AGKQKLQYEGIFIKDSNSLAYYN 95 (115)
T ss_dssp SCEEEEEEECCCSSSCSSCCSS-EEEEEEECSCSBTHHHHHHHHHH-----SSCC--TTTEEEEETTEEECTTSBHHHHT
T ss_pred CCEEEEEEcCCCccccccccCC-eEEEEEECCCCCHHHHHHHHHHH-----HCCC--hHHEEEEECCEECCCCCCHHHCC
Confidence 47888888864 4 34578999999999999999998 2233 99999999999999999999999
Q ss_pred CCCCCcCCceEEEEEEEccCCccCC
Q 033172 75 IPYGEVPGGVIIMHVVVQPSLAKTK 99 (125)
Q Consensus 75 i~~gd~~~~~~tmhlv~~~~~~~kk 99 (125)
|.++ ++|||+++..++.++
T Consensus 96 i~~g------~~i~lv~rl~GGk~~ 114 (115)
T 1we7_A 96 MASG------AVIHLALKERSGPSS 114 (115)
T ss_dssp CCSS------CEEEEEECCCSCCSC
T ss_pred CCCC------CEEEEEEEcCCCCCC
Confidence 9988 789999999888654
No 45
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.66 E-value=4.2e-16 Score=107.36 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=68.4
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
..++|.++..+|+.+ .+++++++||.+||++|++. +.+| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 22 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~qrLi~~Gk~L~D~~tL~~ygI~~g------ 87 (106)
T 1ttn_A 22 YECQLRLRLSTGKDL-KLVVRSTDTVFHMKRRLHAA-----EGVE--PGSQRWFFSGRPLTDKMKFEELKIPKD------ 87 (106)
T ss_dssp CSEEEEEEETTTEEE-EEEECTTSHHHHHHHHHHHT-----TCCC--STTCEEEETTEECCTTSHHHHCCCSSS------
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCcHHHHHHHHHHH-----HCcC--cccEEEEECCEECCCCCcHHHcCCCCC------
Confidence 468899999999554 78999999999999999998 1222 999999999999999999999999998
Q ss_pred EEEEEEEccCCcc
Q 033172 85 IIMHVVVQPSLAK 97 (125)
Q Consensus 85 ~tmhlv~~~~~~~ 97 (125)
.++||+.+.+.+.
T Consensus 88 ~ti~lv~~~~~~~ 100 (106)
T 1ttn_A 88 YVVQVIVSQPVQN 100 (106)
T ss_dssp CEEEEECCCSSCC
T ss_pred CEEEEEEeCCCCC
Confidence 7899999876553
No 46
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=5.9e-16 Score=106.02 Aligned_cols=76 Identities=22% Similarity=0.371 Sum_probs=66.8
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
.+.++|.++.. |.. ..+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 23 ~~~m~I~Vk~~-g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gI~~g--- 88 (101)
T 2klc_A 23 PKIMKVTVKTP-KEK-EEFAVPENSSVQQFKEEISKRFKSH---------TDQLVLIFAGKILKDQDTLSQHGIHDG--- 88 (101)
T ss_dssp CCCEEEEEECS-SCE-EEEEECSCCCHHHHHHHHHHHHTCC---------GGGEEEEETTEEECTTCCTGGGTCCTT---
T ss_pred CCeEEEEEEeC-CcE-EEEEECCCCCHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCcCcHHHcCCCCC---
Confidence 46788888888 644 478999999999999999998 55 999999999999999999999999988
Q ss_pred CceEEEEEEEccCCc
Q 033172 82 GGVIIMHVVVQPSLA 96 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~ 96 (125)
.++||+.++++.
T Consensus 89 ---~~I~l~~~~~~~ 100 (101)
T 2klc_A 89 ---LTVHLVIKTQNR 100 (101)
T ss_dssp ---CEEEEEECCSSC
T ss_pred ---CEEEEEEcCCCC
Confidence 689999887653
No 47
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.66 E-value=2.6e-16 Score=109.74 Aligned_cols=86 Identities=16% Similarity=0.118 Sum_probs=68.0
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCC------CCceeEEEecCeecC-CCCccccCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPK------AVTEIKLISSGKILE-NNKTVGQCK 74 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~------~~~~qrLI~~Gr~L~-D~~tL~~~~ 74 (125)
.....|.++..+|+.+ +++|++++||++||++|++. .|.+-..-+. ..++|||||+|+.|+ |++||++|+
T Consensus 5 ~~~M~I~Vk~l~g~~~-~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dyg 83 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVM-PVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYG 83 (105)
T ss_dssp CCSEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHT
T ss_pred CCcEEEEEEecCCCEE-EEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcC
Confidence 5678999999999766 79999999999999999998 3300000000 025789999999995 679999999
Q ss_pred CCCCCcCCceEEEEEEEccCCc
Q 033172 75 IPYGEVPGGVIIMHVVVQPSLA 96 (125)
Q Consensus 75 i~~gd~~~~~~tmhlv~~~~~~ 96 (125)
|.+| .++|++++..+.
T Consensus 84 I~~g------~~l~lv~~lr~~ 99 (105)
T 1v2y_A 84 IRNR------DEVSFIKKLGQK 99 (105)
T ss_dssp CCSS------EEEEEEECSCSC
T ss_pred CCCC------CEEEEEehhccC
Confidence 9999 799999998665
No 48
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.65 E-value=9.6e-16 Score=104.89 Aligned_cols=84 Identities=8% Similarity=0.102 Sum_probs=68.1
Q ss_pred CCeEEEEEEeCCCC---eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCC-CccccCCCCCCC
Q 033172 4 EELIDIKFRLYDGS---DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENN-KTVGQCKIPYGE 79 (125)
Q Consensus 4 ~~~v~l~~~~~~g~---~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~-~tL~~~~i~~gd 79 (125)
...++|+++..++. ....+++++++||++||++|++. +.+| +++|||+|+|+.|+|+ +||++|+|.+|
T Consensus 5 ~~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~-----~gip--~~~qrL~~~gk~L~D~~~tL~~ygI~~g- 76 (102)
T 1v5o_A 5 SSGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELE-----SGVP--AEEAQIVYMEQLLTDDHCSLGSYGLKDG- 76 (102)
T ss_dssp SCCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHH-----TCCC--GGGBCEEETTEEECCSSSBHHHHTCCTT-
T ss_pred CCeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHH-----HCcC--hHHeEEEECCEECCCCcccHHHCCCCCC-
Confidence 34577777776542 44578999999999999999998 2233 9999999999999887 79999999998
Q ss_pred cCCceEEEEEEEccCCccCCC
Q 033172 80 VPGGVIIMHVVVQPSLAKTKT 100 (125)
Q Consensus 80 ~~~~~~tmhlv~~~~~~~kk~ 100 (125)
.++||+.+..++....
T Consensus 77 -----~~l~l~~~~~gg~~~~ 92 (102)
T 1v5o_A 77 -----DMVVLLQKDNVGLRTP 92 (102)
T ss_dssp -----EEEEECBCCCCCCSSC
T ss_pred -----CEEEEEECCCCCCCCC
Confidence 7899998876665443
No 49
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.65 E-value=8.2e-16 Score=103.87 Aligned_cols=75 Identities=23% Similarity=0.384 Sum_probs=65.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
+|+++..+|..+ .+++++++||.+||++|++. +| +++|||+|+||.|+|+.+|++|+|.+| .
T Consensus 2 ~I~Vk~~~g~~~-~~~v~~~~TV~~LK~~I~~~~gi~---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~ 65 (98)
T 1yx5_B 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (98)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHTCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred EEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC------C
Confidence 578888888554 78999999999999999998 44 899999999999999999999999988 6
Q ss_pred EEEEEEccCCccC
Q 033172 86 IMHVVVQPSLAKT 98 (125)
Q Consensus 86 tmhlv~~~~~~~k 98 (125)
++|++.+..++..
T Consensus 66 ~i~l~~~~~gG~~ 78 (98)
T 1yx5_B 66 TLHLVLRLRGGRD 78 (98)
T ss_dssp EEEEEECCCCC--
T ss_pred EEEEEEeCCCCCc
Confidence 8999999876644
No 50
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.65 E-value=3e-16 Score=105.79 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=63.4
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
..++|.++. |+. ..+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 18 ~~m~I~Vk~--g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~y~I~~g---- 81 (93)
T 2l7r_A 18 GSMQLFVRA--QEL-HTFEVTGQETVAQIKAHVASLEGIA---------PEDQVVLLAGAPLEDEATLGQCGVEAL---- 81 (93)
T ss_dssp --CEEEEES--SSE-EEEECCSSCBHHHHHHHHHHHHTCC---------GGGCEEEETTEECCTTSBHHHHTCCSS----
T ss_pred CcEEEEEEC--CCE-EEEEeCCCCcHHHHHHHHHHHhCcC---------hhHEEEEECCEECCCCCcHHHCCCCCC----
Confidence 345666665 644 478999999999999999998 55 999999999999999999999999988
Q ss_pred ceEEEEEEEccCCc
Q 033172 83 GVIIMHVVVQPSLA 96 (125)
Q Consensus 83 ~~~tmhlv~~~~~~ 96 (125)
+++|+++++.++
T Consensus 82 --stI~lv~rl~GG 93 (93)
T 2l7r_A 82 --TTLEVAGRMLGG 93 (93)
T ss_dssp --CEEEEECCCCCC
T ss_pred --CEEEEEEecCCC
Confidence 789999998764
No 51
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.65 E-value=7e-16 Score=111.70 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=66.4
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
..++|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.||++|+|.+|
T Consensus 80 ~~m~i~vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gip---------~~~q~L~~~G~~L~d~~tL~~y~i~~g---- 145 (159)
T 3rt3_B 80 EPLSILVRNNKGRSS-TYEVRLTQTVAHLKQQVSGLEGVQ---------DDLFWLTFEGKPLEDQLPLGEYGLKPL---- 145 (159)
T ss_dssp CCEEEEEECTTSCEE-EEEECTTSBHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTSBGGGGTCCTT----
T ss_pred CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHHHCCC---------HHHEEEEECCeecCCCCCHHHcCCCCC----
Confidence 346677778888655 78999999999999999998 55 999999999999999999999999999
Q ss_pred ceEEEEEEEccCCcc
Q 033172 83 GVIIMHVVVQPSLAK 97 (125)
Q Consensus 83 ~~~tmhlv~~~~~~~ 97 (125)
+++|++++..++.
T Consensus 146 --~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 146 --STVFMNLRLRGGG 158 (159)
T ss_dssp --CEEEEEECCC---
T ss_pred --CEEEEEEecCCCC
Confidence 7999999988875
No 52
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.65 E-value=4.1e-16 Score=110.92 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=61.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc-CCce
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PGGV 84 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~-~~~~ 84 (125)
.++|+++- ++....+++++++||++||++|++. +.+| +++|||||+||.|+|++||++|+|.+... +...
T Consensus 2 ~mfl~ir~--~ktti~lev~~sdTV~~lK~kI~~~-----egIP--~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~ 72 (118)
T 2fnj_B 2 DVFLMIRR--HKTTIFTDAKESSTVFELKRIVEGI-----LKRP--PEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAP 72 (118)
T ss_dssp EEEEEEEE--BTEEEEEEEETTSBHHHHHHHHHHH-----HCCC--GGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBC
T ss_pred cEEEEEec--CCEEEEEEeCCcChHHHHHHHHHHH-----hCCC--HHHeEEEECCeECCCCCCHHHcCcccccccCCCC
Confidence 35566654 4444568999999999999999998 2333 99999999999999999999999994110 1112
Q ss_pred EEEEEEEc
Q 033172 85 IIMHVVVQ 92 (125)
Q Consensus 85 ~tmhlv~~ 92 (125)
+++||++|
T Consensus 73 stL~L~lr 80 (118)
T 2fnj_B 73 ATVGLAFR 80 (118)
T ss_dssp EEEEEEEB
T ss_pred CEEEEEec
Confidence 89999999
No 53
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.65 E-value=9.6e-16 Score=107.23 Aligned_cols=77 Identities=25% Similarity=0.359 Sum_probs=69.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
...|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 9 ~~~i~vk~l~G~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~ygI~~g----- 73 (114)
T 2kdi_A 9 EFQIFAKTLTGKTI-TLEVESSDTIDNVKSKIQDKEGIP---------PDQQRLIWAGKQLEDGRTLSDYNIQRE----- 73 (114)
T ss_dssp CCEEEEEETTCCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTTTTTCCSS-----
T ss_pred cEEEEEEeCCCcEE-EEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCCCcHHHCCCCCC-----
Confidence 46788889999554 78999999999999999998 66 999999999999999999999999988
Q ss_pred eEEEEEEEccCCccC
Q 033172 84 VIIMHVVVQPSLAKT 98 (125)
Q Consensus 84 ~~tmhlv~~~~~~~k 98 (125)
+++||++++.++..
T Consensus 74 -stI~l~~~~~GG~~ 87 (114)
T 2kdi_A 74 -STLHLVLRLRGGSM 87 (114)
T ss_dssp -CEEEEEECCCSSCC
T ss_pred -CEEEEEEEcCCCce
Confidence 68999999887754
No 54
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.64 E-value=5.7e-16 Score=107.33 Aligned_cols=79 Identities=19% Similarity=0.279 Sum_probs=68.6
Q ss_pred CeEEEEEEeC---CCCeeeeEEeCC-cchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172 5 ELIDIKFRLY---DGSDIGPFRYSS-ASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (125)
Q Consensus 5 ~~v~l~~~~~---~g~~~~~~~v~~-~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~ 80 (125)
..++|.+++. +|.. ..+++++ ++||.+||++|++. +.+| +++|||+|+|++|+|+.+|++|+|.+|
T Consensus 26 ~~i~i~Vk~~~~~~g~~-~~l~v~~l~~TV~~LK~~I~~~-----~gip--~~~QrL~~~Gk~L~D~~tL~~y~I~~g-- 95 (111)
T 1we6_A 26 GPATIRVSKPNENDGQF-MEITVQSLSENVGSLKEKIAGE-----IQIP--ANKQKLSGKAGFLKDNMSLAHYNVGAG-- 95 (111)
T ss_dssp SCEEEEECCTTCSSSCC-EEEEESCSSSBHHHHHHHHHHH-----TTCC--TTTSEEECSSSBCCTTSBTTTTTCSSS--
T ss_pred CcEEEEEEecccCCCcE-EEEEecCCCCcHHHHHHHHHHH-----HCCC--HHHeEEEECCEECCCCCcHHHCCCCCC--
Confidence 4688888887 7744 4789998 99999999999998 2233 999999999999999999999999998
Q ss_pred CCceEEEEEEEccCCcc
Q 033172 81 PGGVIIMHVVVQPSLAK 97 (125)
Q Consensus 81 ~~~~~tmhlv~~~~~~~ 97 (125)
.++||+++..++.
T Consensus 96 ----~~l~l~~r~~GGk 108 (111)
T 1we6_A 96 ----EILTLSLRERSGP 108 (111)
T ss_dssp ----CEEEEECSSCCSS
T ss_pred ----CEEEEEEEcCCCC
Confidence 6899999988774
No 55
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.64 E-value=8.4e-16 Score=109.35 Aligned_cols=77 Identities=19% Similarity=0.216 Sum_probs=63.2
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc-CC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV-PG 82 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~-~~ 82 (125)
++.|+++-. +.+..+++++++||.+||++|++. +| +++|||||+||+|+|++||++|||..+.. +.
T Consensus 2 ~vFl~Ikr~--ktTI~ldve~sdTV~~lK~kI~~~~giP---------p~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q 70 (118)
T 4ajy_B 2 DVFLMIRRH--KTTIFTDAKESSTVFELKRIVEGILKRP---------PDEQRLYKDDQLLDDGKTLGECGFTSQTARPQ 70 (118)
T ss_dssp EEEEEEEEB--TEEEEEEEETTSBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTTTTTCCGGGSBTT
T ss_pred ceEEEEecC--CEEEEEEcCCCChHHHHHHHHHHHHCCC---------HHHeEEEeCCeECCCcCCHHHcCCCcCcccCC
Confidence 466666544 334568999999999999999998 65 99999999999999999999999998222 23
Q ss_pred ceEEEEEEEcc
Q 033172 83 GVIIMHVVVQP 93 (125)
Q Consensus 83 ~~~tmhlv~~~ 93 (125)
..+++||++|.
T Consensus 71 ~~atl~Lvlr~ 81 (118)
T 4ajy_B 71 APATVGLAFRA 81 (118)
T ss_dssp BCEEEEEEECC
T ss_pred CCCEEEEEEec
Confidence 33899999996
No 56
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=105.27 Aligned_cols=76 Identities=22% Similarity=0.361 Sum_probs=67.8
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
..++|+++..+|..+ .+++++++||.+||++|++. +| +++|||+|+||.|+|+.+|++|+|.++
T Consensus 34 ~~m~I~Vk~~~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrLi~~Gk~L~D~~tL~~~gI~~g---- 99 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 99 (111)
T ss_dssp SCEEEEEECSSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------TTTEEEEETTEECCSSCBTTTTTCCTT----
T ss_pred CeEEEEEEcCCCCEE-EEEeCCCCCHHHHHHHHHHHHCcC---------cccEEEEECCEECCCCCcHHHcCCCCC----
Confidence 468899998888655 78999999999999999998 55 899999999999999999999999988
Q ss_pred ceEEEEEEEccCCc
Q 033172 83 GVIIMHVVVQPSLA 96 (125)
Q Consensus 83 ~~~tmhlv~~~~~~ 96 (125)
+++||+++..++
T Consensus 100 --s~I~l~~rl~GG 111 (111)
T 2ojr_A 100 --STLHLVLRLRGG 111 (111)
T ss_dssp --CEEEEEECCCC-
T ss_pred --CEEEEEEeCCCC
Confidence 689999988764
No 57
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.64 E-value=1.2e-15 Score=113.51 Aligned_cols=78 Identities=24% Similarity=0.373 Sum_probs=66.6
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm 87 (125)
+|.++..+|+.+ .+++++++||.+||++|++. +.+| +++|||+|+||.|+|+.+|++|+|.+| .++
T Consensus 2 qI~Vk~~~Gk~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~y~I~~g------stI 67 (169)
T 3l0w_B 2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (169)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHH-----HCCC--TTTEEEEETTEECCTTSBGGGGTCCTT------CEE
T ss_pred EEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHH-----HCcC--HHHEEEEECCccccCcCcHHHcCCCCC------CEE
Confidence 678888999665 68999999999999999998 1223 999999999999999999999999998 799
Q ss_pred EEEEccCCccCC
Q 033172 88 HVVVQPSLAKTK 99 (125)
Q Consensus 88 hlv~~~~~~~kk 99 (125)
|++++..++.+.
T Consensus 68 ~Lvlrl~GG~k~ 79 (169)
T 3l0w_B 68 HLVLRLRGGGGE 79 (169)
T ss_dssp EEEECCCC---C
T ss_pred EEEEEecccccc
Confidence 999998887654
No 58
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.1e-16 Score=107.66 Aligned_cols=73 Identities=29% Similarity=0.375 Sum_probs=61.9
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
..++|+++. +|+.+ .+++++++||++||++|++. +| +++|||+|+||.|+|+.+|++|+|.+|
T Consensus 27 m~i~I~Vk~-~g~~~-~l~v~~~~TV~~LK~~I~~~~gip---------~~~QrLi~~Gk~L~D~~tL~~~gI~~g---- 91 (101)
T 3m63_B 27 MSLNIHIKS-GQDKW-EVNVAPESTVLQFKEAINKANGIP---------VANQRLIYSGKILKDDQTVESYHIQDG---- 91 (101)
T ss_dssp --CCEEEEC-SSCCC-CBCCCTTSBHHHHHHHHHHHHSCC---------STTCCEEETTEECCTTSBTTTTTCCTT----
T ss_pred cEEEEEEEE-CCEEE-EEEeCCCCCHHHHHHHHHHHHCcC---------hHHEEEEECCEECCCcCcHHHCCCCCC----
Confidence 456677776 66444 78999999999999999998 55 999999999999999999999999999
Q ss_pred ceEEEEEEEccC
Q 033172 83 GVIIMHVVVQPS 94 (125)
Q Consensus 83 ~~~tmhlv~~~~ 94 (125)
.++||+.+.|
T Consensus 92 --~tI~lv~~~P 101 (101)
T 3m63_B 92 --HSVHLVKSQP 101 (101)
T ss_dssp --EEEEECCCC-
T ss_pred --CEEEEEeCCC
Confidence 8999987653
No 59
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.63 E-value=1.4e-15 Score=105.04 Aligned_cols=81 Identities=23% Similarity=0.298 Sum_probs=66.0
Q ss_pred CeEEEEEEeCCC---CeeeeEEeC--------C-cchHHHHHHHHHhhCCCCCccCCCCCce-eEEEecCeecCCCCccc
Q 033172 5 ELIDIKFRLYDG---SDIGPFRYS--------S-ASTVDMLKQRIVSDWPKGKTIVPKAVTE-IKLISSGKILENNKTVG 71 (125)
Q Consensus 5 ~~v~l~~~~~~g---~~~~~~~v~--------~-~~TV~~lK~~I~~~~p~~~~~~P~~~~~-qrLI~~Gr~L~D~~tL~ 71 (125)
..++|.+|..+| ..+ .++|+ + ++||.+||++|++..| +.+| +++ |||||+||.|+|+.+|+
T Consensus 11 ~~~~i~Vk~~~~~~~~~~-~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~---~gip--~~~~qrLi~~Gk~L~D~~tL~ 84 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKS-ILQLPETELGEYSLGGYSISFLKQLIAGKLQ---ESVP--DPELIDLIYCGRKLKDDQTLD 84 (107)
T ss_dssp CSCCEEEEETTCTTSCCE-EECCCCCSSCSSCCCCCBHHHHHHHHHHHCT---TTCC--CSSSEEEEETTEECCTTCBHH
T ss_pred CceEEEEEeCCCCCccEE-EEEecCccccccCcccCCHHHHHHHHHHHhc---cCCC--hhhcEEEEECCeECCCCCcHH
Confidence 457888888887 444 57754 4 4999999999999853 2444 889 99999999999999999
Q ss_pred cCCCCCCCcCCceEEEEEEEccCCcc
Q 033172 72 QCKIPYGEVPGGVIIMHVVVQPSLAK 97 (125)
Q Consensus 72 ~~~i~~gd~~~~~~tmhlv~~~~~~~ 97 (125)
+|+|.++ .+|||+.++++.+
T Consensus 85 ~y~i~~g------~~i~lv~~~~~~~ 104 (107)
T 1x1m_A 85 FYGIQPG------STVHVLRKSWSGP 104 (107)
T ss_dssp HHTCCTT------CEEEEEESSCCSS
T ss_pred HcCCCCC------CEEEEEeCCCCCC
Confidence 9999998 6899999876543
No 60
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.40 E-value=5.1e-17 Score=104.31 Aligned_cols=72 Identities=25% Similarity=0.426 Sum_probs=63.3
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
+|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+| +
T Consensus 2 ~i~Vk~~~g~~~-~~~v~~~~tV~~lK~~i~~~~gi~---------~~~qrL~~~gk~L~d~~tL~~~~i~~g------~ 65 (76)
T 3b1l_X 2 IVFVRFNSSYGF-PVEVDSDTSILQLKEVVAKQQGVP---------ADQLRVIFAGKELPNHLTVQNCDLEQQ------S 65 (76)
Confidence 466777788554 68999999999999999998 55 999999999999999999999999998 7
Q ss_pred EEEEEEccCC
Q 033172 86 IMHVVVQPSL 95 (125)
Q Consensus 86 tmhlv~~~~~ 95 (125)
++|+++++.+
T Consensus 66 ~i~l~~rlrg 75 (76)
T 3b1l_X 66 IVHIVQRPRR 75 (76)
Confidence 8999988754
No 61
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.60 E-value=8.2e-17 Score=118.51 Aligned_cols=79 Identities=25% Similarity=0.381 Sum_probs=0.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm 87 (125)
+|.++..+|..+ .+++++++||.+||++|++. +.+| +++|||||+|+.|+|+.+|++|+|.+| ++|
T Consensus 2 qI~VK~l~G~~~-~l~V~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~dygI~~g------stL 67 (152)
T 3u5c_f 2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (152)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHH-----hCCC--HHHEEEEECCEEccccCcHHHcCCCCC------CEE
Confidence 567777888554 78999999999999999998 2233 999999999999999999999999998 799
Q ss_pred EEEEccCCccCCC
Q 033172 88 HVVVQPSLAKTKT 100 (125)
Q Consensus 88 hlv~~~~~~~kk~ 100 (125)
||++++.++++++
T Consensus 68 ~Lvlrl~GGgKkr 80 (152)
T 3u5c_f 68 HLVLRLRGGGKKR 80 (152)
T ss_dssp -------------
T ss_pred EEEeeccCCCcCc
Confidence 9999999997654
No 62
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.60 E-value=6.5e-15 Score=98.40 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=64.2
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCc-----chHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCC-CCccccCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSA-----STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILEN-NKTVGQCKIPY 77 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~-----~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D-~~tL~~~~i~~ 77 (125)
++.++|+++.. |..+ .++++++ +||.+||++|++. +.+| +++|||+|.||.|+| +.+|++|+|.+
T Consensus 5 ~~~~~v~Vk~~-~~~~-~i~v~~~~~~~~~TV~~LK~~i~~~-----~gip--~~~qrL~~~Gk~L~D~~~~L~~~~i~~ 75 (92)
T 1wxv_A 5 SSGLTVTVTHS-NEKH-DLHVTSQQGSSEPVVQDLAQVVEEV-----IGVP--QSFQKLIFKGKSLKEMETPLSALGIQD 75 (92)
T ss_dssp CSSEEEEEECS-SSEE-EEEECCCSSSSSCBHHHHHHHHHHH-----TCCC--TTTCEEEETTEEECCSSSBHHHHTCCS
T ss_pred CCeEEEEEEEC-CEEE-EEEECCCcCcccCcHHHHHHHHHHH-----HCcC--HHHEEEEECCeecCCCcccHHHCCCCC
Confidence 56688888874 5444 7899995 9999999999998 2233 999999999999988 66899999998
Q ss_pred CCcCCceEEEEEEEccCCc
Q 033172 78 GEVPGGVIIMHVVVQPSLA 96 (125)
Q Consensus 78 gd~~~~~~tmhlv~~~~~~ 96 (125)
| .++||+.++..+
T Consensus 76 g------~~i~l~~~~~~~ 88 (92)
T 1wxv_A 76 G------CRVMLIGKKNSG 88 (92)
T ss_dssp S------EEEEEESCCSCS
T ss_pred C------CEEEEEecCCCC
Confidence 8 799998876554
No 63
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.59 E-value=4.6e-15 Score=100.90 Aligned_cols=75 Identities=12% Similarity=0.162 Sum_probs=63.8
Q ss_pred CCeEEEEEEeCCCCeee-eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 4 EELIDIKFRLYDGSDIG-PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~-~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
++.++|+++. .| ..+ .+++++++||.+||++|++. +.+| +++|||||.||.|+|+ +|++|+|.++
T Consensus 5 ~~~m~i~Vk~-~g-~~~~~l~v~~~~TV~~lK~~I~~~-----tgip--~~~QkLi~~Gk~L~D~-tL~~~~I~~g---- 70 (96)
T 1wgg_A 5 SSGYSVTVKW-GK-EKFEGVELNTDEPPMVFKAQLFAL-----TGVQ--PARQKVMVKGGTLKDD-DWGNIKMKNG---- 70 (96)
T ss_dssp CCEEEEEEEE-TT-EEEEEEEEESSSCHHHHHHHHHHH-----TCCC--TTTSCCEETTEECCSS-CCCSCCCCSS----
T ss_pred CcEEEEEEEE-CC-EEEEEEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEEECCcCCCCC-CHHHCCCCCC----
Confidence 6788888886 56 445 48999999999999999999 2233 9999999999999999 9999999998
Q ss_pred ceEEEEEEEccC
Q 033172 83 GVIIMHVVVQPS 94 (125)
Q Consensus 83 ~~~tmhlv~~~~ 94 (125)
.++||+..+.
T Consensus 71 --~~i~l~~~~~ 80 (96)
T 1wgg_A 71 --MTVLMMGSAD 80 (96)
T ss_dssp --CEEECCCCCC
T ss_pred --CEEEEEecch
Confidence 6899877655
No 64
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.59 E-value=3e-15 Score=113.69 Aligned_cols=77 Identities=22% Similarity=0.319 Sum_probs=69.6
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
.++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||||+|+.|+|+.+|++|+|.++
T Consensus 105 eMqI~VKtl~Gkt~-~l~V~~s~TV~~LK~kI~~~~gIp---------~~~QrLi~~Gk~L~D~~tL~dygI~~g----- 169 (189)
T 3q3f_A 105 GGQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 169 (189)
T ss_dssp CEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCCEEETTEECCTTCBGGGGTCCTT-----
T ss_pred ceeeeeecCCCCEE-EEEeCCCCcHHHHHHHHHhccCCC---------HHHEEEEECCEECCCCCCHHHCCCCCC-----
Confidence 47888899999665 78999999999999999998 55 999999999999999999999999998
Q ss_pred eEEEEEEEccCCccC
Q 033172 84 VIIMHVVVQPSLAKT 98 (125)
Q Consensus 84 ~~tmhlv~~~~~~~k 98 (125)
+++||+++..++.+
T Consensus 170 -stI~LvlrlrGG~~ 183 (189)
T 3q3f_A 170 -STLHLVLRLRGGGQ 183 (189)
T ss_dssp -CEEEECCCCCCCCC
T ss_pred -CEEEEEEEcCCCCc
Confidence 79999999887754
No 65
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.59 E-value=8.4e-15 Score=107.67 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=69.0
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
+..++|.++..+|+.+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.++
T Consensus 18 ~~~m~i~Vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip---------~~~QrL~~~g~~L~d~~tL~~~~i~~~--- 84 (172)
T 3u30_A 18 GSHMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE--- 84 (172)
T ss_dssp -CCEEEEEEETTTEEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTCBTGGGTCCTT---
T ss_pred CCcEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCccccccCCHhHcCCccc---
Confidence 4678999999999554 78999999999999999998 55 999999999999999999999999998
Q ss_pred CceEEEEEEEccCCc
Q 033172 82 GGVIIMHVVVQPSLA 96 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~ 96 (125)
+++|++++..++
T Consensus 85 ---~~l~l~~~~~gg 96 (172)
T 3u30_A 85 ---STLHLVLRLRGG 96 (172)
T ss_dssp ---CEEEEEECCCCC
T ss_pred ---ceeeeeeccccc
Confidence 689999987765
No 66
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.57 E-value=1.4e-14 Score=102.99 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=66.0
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
.+.|.++..+|..+ .+++++++||.+||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+|
T Consensus 76 ~~~i~Vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gi~---------~~~qrL~~~g~~L~d~~tL~~~~i~~~----- 140 (152)
T 3b08_A 76 GMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE----- 140 (152)
T ss_dssp CEEEEEEESSSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT-----
T ss_pred ccceeeeecCCCEE-EEEeCCCCcHHHHHHHHHHHhCcC---------hhhEEEEECCEECCCCCCHHHcCCCCC-----
Confidence 35677778888554 78999999999999999998 55 999999999999999999999999998
Q ss_pred eEEEEEEEccCCc
Q 033172 84 VIIMHVVVQPSLA 96 (125)
Q Consensus 84 ~~tmhlv~~~~~~ 96 (125)
+++|+++++.++
T Consensus 141 -~~i~l~~r~~GG 152 (152)
T 3b08_A 141 -STLHLVLRLRGG 152 (152)
T ss_dssp -CEEEEEECCCC-
T ss_pred -CEEEEEEecCCC
Confidence 689999998764
No 67
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.57 E-value=1.1e-14 Score=96.75 Aligned_cols=64 Identities=25% Similarity=0.309 Sum_probs=56.7
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEE
Q 033172 14 YDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVV 91 (125)
Q Consensus 14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~ 91 (125)
.+|+. ..+++++++||++||++|++. +| +++|||+|+||.|+|+.+|++|+|.+| .++||+.
T Consensus 19 ~~g~~-~~l~v~~~~TV~~LK~~I~~~~gip---------~~~qrL~~~Gk~L~D~~tL~~~gi~~g------~~l~l~~ 82 (85)
T 2kd0_A 19 FGGKS-IPLSVSPDCTVKDLKSQLQPITNVL---------PRGQKLIFKGKVLVETSTLKQSDVGSG------AKLMLMA 82 (85)
T ss_dssp ETTEE-EEEEECTTSBHHHHHHHHHHHHCCC---------TTTCEEEETTEECCTTCBTTTTTCCTT------EEEEEEC
T ss_pred ECCEE-EEEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEECCeECCCcCCHHHCCCCCC------CEEEEEE
Confidence 46744 478999999999999999998 55 899999999999999999999999998 7899876
Q ss_pred cc
Q 033172 92 QP 93 (125)
Q Consensus 92 ~~ 93 (125)
.+
T Consensus 83 s~ 84 (85)
T 2kd0_A 83 SQ 84 (85)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 68
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.57 E-value=8.3e-15 Score=98.13 Aligned_cols=76 Identities=24% Similarity=0.180 Sum_probs=63.9
Q ss_pred CCeEEEEEEeCCCCeeeeE-EeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE---ecCeecCCCCccccCCCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPF-RYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~-~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI---~~Gr~L~D~~tL~~~~i~~gd 79 (125)
++.++|+++. .|+. +.+ ++++++||.+||++|++. +.+| +++|||+ |+|+.|+|+.+|++|+|.+|
T Consensus 5 ~~~m~i~Vk~-~g~~-~~i~~v~~~~TV~~lK~~I~~~-----~gip--~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g- 74 (90)
T 1v5t_A 5 SSGLPIIVKW-GGQE-YSVTTLSEDDTVLDLKQFLKTL-----TGVL--PERQKLLGLKVKGKPAENDVKLGALKLKPN- 74 (90)
T ss_dssp CCSCCEEEEE-TTEE-EEECSCCSSSBHHHHHHHHHHH-----TCCC--TTTCEEESCEETTEECCTTSBHHHHTCCTT-
T ss_pred CceEEEEEEE-CCEE-EEEEEeCCCCCHHHHHHHHHHH-----HCcC--HHHeEEEeeccCCcCcCCCCCHHHcCCCCC-
Confidence 4567777776 5644 478 999999999999999999 2233 9999999 99999999999999999998
Q ss_pred cCCceEEEEEEEccC
Q 033172 80 VPGGVIIMHVVVQPS 94 (125)
Q Consensus 80 ~~~~~~tmhlv~~~~ 94 (125)
.++||+..+.
T Consensus 75 -----~~l~l~~~~~ 84 (90)
T 1v5t_A 75 -----TKIMMMGTRE 84 (90)
T ss_dssp -----EEEEEECCCS
T ss_pred -----CEEEEEecCc
Confidence 7899977654
No 69
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.56 E-value=1.6e-14 Score=96.81 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=61.6
Q ss_pred EEEEEEeC-CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe-------cCeecCCCCccccCCCCCC
Q 033172 7 IDIKFRLY-DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS-------SGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 7 v~l~~~~~-~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~-------~Gr~L~D~~tL~~~~i~~g 78 (125)
|.|.+... ++....+..|++++||++||++|+.. +++| +++||||| .|+.|+|+++|++|+|.+|
T Consensus 3 V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~-----~Gip--~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g 75 (86)
T 4b6w_A 3 VKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTH-----FATP--PEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDE 75 (86)
T ss_dssp EEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTT-----SCCC--GGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTT
T ss_pred EEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHH-----HCCC--HHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCC
Confidence 55666543 34355578999999999999999998 3333 99999997 6999999999999999999
Q ss_pred CcCCceEEEEEEEccC
Q 033172 79 EVPGGVIIMHVVVQPS 94 (125)
Q Consensus 79 d~~~~~~tmhlv~~~~ 94 (125)
.++||+-..|
T Consensus 76 ------~~ihlvd~~P 85 (86)
T 4b6w_A 76 ------FVIHVVDLQP 85 (86)
T ss_dssp ------CEEEEEECCC
T ss_pred ------CEEEEEeCCC
Confidence 7999987654
No 70
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.56 E-value=1.8e-14 Score=104.22 Aligned_cols=74 Identities=20% Similarity=0.286 Sum_probs=65.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEE-e-cCeecCCCCccccCCCCCCCcCC
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLI-S-SGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI-~-~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
++|.+++.+|+.+ .+++++++||++||++|++. +| +++|||+ | +|+.|+|+.+|++|+|.+|
T Consensus 3 m~i~vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~~gip---------~~~QrL~~~~~g~~L~d~~tL~~y~i~~~---- 68 (159)
T 3rt3_B 3 WDLTVKMLAGNEF-QVSLSSSMSVSELKAQITQKIGVH---------AFQQRLAVHPSGVALQDRVPLASQGLGPG---- 68 (159)
T ss_dssp CEEEEEETTSCEE-EEECCTTCCHHHHHHHHHHHHCCC---------GGGEEEEEETTCCBCCTTSCGGGGTCCTT----
T ss_pred eEEEEEECCCCEE-EEEeCCCCcHHHHHHHHHHHhCCC---------HHHEEEEEcCCCCCCCCCCCHHHcCCCCC----
Confidence 5788888999655 78999999999999999999 55 9999999 9 8999999999999999998
Q ss_pred ceEEEEEEEcc-CCc
Q 033172 83 GVIIMHVVVQP-SLA 96 (125)
Q Consensus 83 ~~~tmhlv~~~-~~~ 96 (125)
+++|++++. +++
T Consensus 69 --~~l~l~~~~~~~~ 81 (159)
T 3rt3_B 69 --STVLLVVDKSDEP 81 (159)
T ss_dssp --CEEEEEECCCCCC
T ss_pred --CEEEEEccCCCCc
Confidence 789999984 443
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.55 E-value=3.8e-16 Score=110.94 Aligned_cols=77 Identities=25% Similarity=0.370 Sum_probs=1.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm 87 (125)
+|.++..+|..+ .+++++++||.+||++|++. +.+| +++|||+|+|+.|+|+.||++|+|.+| +++
T Consensus 2 ~I~Vk~~~G~~~-~l~v~~~~TV~~LK~~I~~~-----~gip--~~~QrLi~~Gk~L~D~~tL~~~~I~~g------sti 67 (128)
T 3u5e_m 2 QIFVKTLTGKTI-TLEVESSDTIDNVKSKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------STL 67 (128)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEeCCCCEE-EEEeCCCCCHHHHHHHHHHH-----hCcC--hHHEEEEECCEECCCCCchhhhccCCC------CEE
Confidence 566777888554 78999999999999999998 2233 899999999999999999999999998 799
Q ss_pred EEEEccCCccC
Q 033172 88 HVVVQPSLAKT 98 (125)
Q Consensus 88 hlv~~~~~~~k 98 (125)
||+++..++..
T Consensus 68 ~l~~rl~GG~~ 78 (128)
T 3u5e_m 68 HLVLRLRGGII 78 (128)
T ss_dssp ---------CC
T ss_pred EEEEEcCCCCC
Confidence 99999888754
No 72
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.55 E-value=3.7e-14 Score=98.96 Aligned_cols=75 Identities=12% Similarity=0.061 Sum_probs=60.8
Q ss_pred eEEEEEEe--CCCC-eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCC-CCC
Q 033172 6 LIDIKFRL--YDGS-DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIP-YGE 79 (125)
Q Consensus 6 ~v~l~~~~--~~g~-~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~-~gd 79 (125)
.|++++.+ ..++ ....++++|++||++||++|+++ +| +++|||||+|+.|+|++||++|||. +|
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gip---------p~~QRli~ggkll~D~~TL~~ygI~~~G- 91 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFP---------PVLQQWVIGQRLARDQETLHSHGVRQNG- 91 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEEECTTCBTGGGTCCSTT-
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCC---------HHHEEEeccCeEccCcCcHHHcCCCCCC-
Confidence 45555444 4432 34579999999999999999998 66 9999999999999999999999994 77
Q ss_pred cCCceEEEEEEEccCC
Q 033172 80 VPGGVIIMHVVVQPSL 95 (125)
Q Consensus 80 ~~~~~~tmhlv~~~~~ 95 (125)
.++||++-...
T Consensus 92 -----~t~hL~l~~~~ 102 (105)
T 4dbg_A 92 -----DSAYLYLLSAR 102 (105)
T ss_dssp -----CEEEEEECCC-
T ss_pred -----CEEEEEEEecc
Confidence 68999876543
No 73
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.55 E-value=1.2e-14 Score=106.81 Aligned_cols=77 Identities=22% Similarity=0.355 Sum_probs=62.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
.++|.++..+|+.+ .+++++++||.+||++|++. +.+| +++|||+|+|+.|+|+.+|++|+|.+| +
T Consensus 96 g~~i~Vk~~~g~~~-~l~v~~~~tV~~lK~~I~~~-----~gip--~~~q~L~~~g~~L~D~~tL~~y~i~~g------~ 161 (172)
T 3u30_A 96 GMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDK-----EGIP--PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 161 (172)
T ss_dssp CEEEEEEESSCCEE-EEEECTTCBHHHHHHHHHHH-----HCCC--GGGCCEEETTEECCTTSBSGGGTCCTT------C
T ss_pred cccceeecccCcce-eEEecCCCCHHHHHHHHHHH-----hCCC--ceeEEEEECCccCCCCCcHHHhCCCCC------C
Confidence 35566777788554 78999999999999999999 2233 999999999999999999999999999 7
Q ss_pred EEEEEEccCCc
Q 033172 86 IMHVVVQPSLA 96 (125)
Q Consensus 86 tmhlv~~~~~~ 96 (125)
++||+++..++
T Consensus 162 tl~l~~rlrgG 172 (172)
T 3u30_A 162 TLHLVLRLRGG 172 (172)
T ss_dssp EEEECC-----
T ss_pred EEEEEEecCCC
Confidence 99999987653
No 74
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.54 E-value=1.1e-14 Score=98.56 Aligned_cols=73 Identities=29% Similarity=0.308 Sum_probs=62.0
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
++.++|+++. .| ....+++++++||.+||++|++. +| +++|||+|.|+.|+ +.+|++|+|.++
T Consensus 15 ~~~~~i~Vk~-~g-~~~~i~v~~~~TV~~LK~~I~~~tgip---------~~~QrL~~~Gk~Ld-d~tL~~~~i~~g--- 79 (95)
T 1v86_A 15 KELVDLKIIW-NK-TKHDVKVPLDSTGSELKQKIHSITGLP---------PAMQKVMYKGLVPE-DKTLREIKVTSG--- 79 (95)
T ss_dssp CCCEEEEEEE-TT-EEEEEEECTTSBHHHHHHHHHHHHCSC---------STTCCCBSSSBCCS-SSBHHHHCCCTT---
T ss_pred CceEEEEEEE-CC-EEEEEEECCCCcHHHHHHHHHHHHCcC---------HHHeEEEECCeeCC-cCcHHHCCCCCC---
Confidence 4678888884 46 44578999999999999999999 55 99999999999995 459999999998
Q ss_pred CceEEEEEEEccC
Q 033172 82 GGVIIMHVVVQPS 94 (125)
Q Consensus 82 ~~~~tmhlv~~~~ 94 (125)
.+|||+..+.
T Consensus 80 ---~~i~lv~~~~ 89 (95)
T 1v86_A 80 ---AKIMVVGSTI 89 (95)
T ss_dssp ---EEEEECCSSC
T ss_pred ---CEEEEEeccc
Confidence 7899977654
No 75
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.53 E-value=5e-14 Score=100.07 Aligned_cols=73 Identities=23% Similarity=0.382 Sum_probs=65.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
+|+++..+|+.+ .+++++++||++||++|++. +| +++|||+|+|+.|+|+.+|++|+|.+| .
T Consensus 2 ~i~vk~~~g~~~-~~~v~~~~tv~~lK~~i~~~~gip---------~~~q~L~~~g~~L~d~~tL~~~~i~~~------~ 65 (152)
T 3b08_A 2 QIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE------S 65 (152)
T ss_dssp EEEEEETTSCEE-EEECCTTCBHHHHHHHHHHHHCCC---------GGGEEEEETTEECCTTSBTGGGTCCTT------C
T ss_pred EEEEEeCCCCEE-EEEECCCCCHHHHHHHHHHHHCcC---------hHHeEEEECCeECcCcccHHHhccCCC------C
Confidence 577888888554 78999999999999999998 55 899999999999999999999999998 6
Q ss_pred EEEEEEccCCc
Q 033172 86 IMHVVVQPSLA 96 (125)
Q Consensus 86 tmhlv~~~~~~ 96 (125)
++|++.+.+++
T Consensus 66 ~l~l~~~~~~~ 76 (152)
T 3b08_A 66 TLHLVLRLRGG 76 (152)
T ss_dssp EEEEEECCTTC
T ss_pred eeEEEeecccc
Confidence 89999887654
No 76
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.48 E-value=1.3e-13 Score=94.07 Aligned_cols=74 Identities=18% Similarity=0.163 Sum_probs=61.9
Q ss_pred CCeEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec--Ce---ec-CCCCccccCCCC
Q 033172 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS--GK---IL-ENNKTVGQCKIP 76 (125)
Q Consensus 4 ~~~v~l~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~--Gr---~L-~D~~tL~~~~i~ 76 (125)
+..|+|.++...+. ...++++++++||++||++|++. +.+| +++|||+|. |+ .| +|+++|++|+|.
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~-----~GiP--~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~ 85 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEIL-----TGGC--AGTMKVQVFKGDTCVSTMDNNDAQLGYYANS 85 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHH-----HCSC--TTTEEEEEEETTEEEEECCCTTSBHHHHCCS
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHH-----HCcC--HHHeEEEEecCCcccceeCCCCCCHhHCCcC
Confidence 57888988886663 24578999999999999999999 3333 999999998 45 34 999999999999
Q ss_pred CCCcCCceEEEEEE
Q 033172 77 YGEVPGGVIIMHVV 90 (125)
Q Consensus 77 ~gd~~~~~~tmhlv 90 (125)
+| .++||+
T Consensus 86 ~g------stihlv 93 (95)
T 2kjr_A 86 DG------LRLHVV 93 (95)
T ss_dssp SS------CEEEEE
T ss_pred CC------CEEEEE
Confidence 99 789986
No 77
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.1e-14 Score=93.59 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=59.5
Q ss_pred eEEEEEEeCCCCee-eeE-EeCCcchHHHHHHHHHhh---CCCCCccCCCCCceeEEEec--CeecCCCCccccCCCCCC
Q 033172 6 LIDIKFRLYDGSDI-GPF-RYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISS--GKILENNKTVGQCKIPYG 78 (125)
Q Consensus 6 ~v~l~~~~~~g~~~-~~~-~v~~~~TV~~lK~~I~~~---~p~~~~~~P~~~~~qrLI~~--Gr~L~D~~tL~~~~i~~g 78 (125)
.++|.++...|+.+ ..+ ++++++||++||++|++. || +++|||+|. |++|+|++||++|+|.++
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~---------~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~ 80 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWY---------PARQSLRLDPKGKSLKDEDVLQKLPVGTT 80 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSC---------TTTCCEESSTTSCCCCTTCBTTTSSCCSE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCC---------hHHeEEEecCCCcCcCCCCCHHHcCCCCC
Confidence 36788888887664 357 999999999999999994 55 899999977 999999999999999988
Q ss_pred CcCCceEEEEE
Q 033172 79 EVPGGVIIMHV 89 (125)
Q Consensus 79 d~~~~~~tmhl 89 (125)
+++|+
T Consensus 81 ------stl~~ 85 (88)
T 2dzj_A 81 ------ATLYF 85 (88)
T ss_dssp ------EEEEE
T ss_pred ------CEEEE
Confidence 67776
No 78
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.45 E-value=1.3e-13 Score=113.78 Aligned_cols=84 Identities=21% Similarity=0.381 Sum_probs=68.1
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
...+.|.||..+|+.+ .++|++++||.+||++|++.+. ++.+| +++|||||+||+|+|+++|++|+|++++
T Consensus 5 ~~~M~I~VKtl~Gk~~-~leV~~~~TV~~LK~~I~~~~~--~~gip--~~~QrLiy~GK~L~D~~tL~dygI~~gs---- 75 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTF-KIRMEPDETVKVLKEKIEAEKG--RDAFP--VAGQKLIYAGKILSDDVPIRDYRIDEKN---- 75 (368)
T ss_dssp -CCCCEEEEETTTEEE-EECCCTTCBHHHHHHHHHHHTC--SSSCC--STEEEEESSSSEECSSSBTTTTCCCTTS----
T ss_pred CceEEEEEEeCCCCEE-EEEeCCCChHHHHHHHHHHHhC--cCCCC--hhheEEEECCeecCCcCCHHHcCCCCCC----
Confidence 3457788888999554 7899999999999999999632 23344 9999999999999999999999999883
Q ss_pred eEEEEEEEccCCcc
Q 033172 84 VIIMHVVVQPSLAK 97 (125)
Q Consensus 84 ~~tmhlv~~~~~~~ 97 (125)
.++||+.++.++.
T Consensus 76 -tIv~lv~k~~~~~ 88 (368)
T 1oqy_A 76 -FVVVMVTKTKAGQ 88 (368)
T ss_dssp -CEEEEEECCCSSS
T ss_pred -EEEEEEecCCCCC
Confidence 2458888876543
No 79
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.45 E-value=3.2e-13 Score=92.50 Aligned_cols=76 Identities=12% Similarity=0.175 Sum_probs=62.6
Q ss_pred CCeEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe---e----cCCCCccccCCC
Q 033172 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK---I----LENNKTVGQCKI 75 (125)
Q Consensus 4 ~~~v~l~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr---~----L~D~~tL~~~~i 75 (125)
++.|.|.+...... ...+++|++++||++||++|++. +.+| +++|||||.|+ . ++|+++|++|+|
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~-----~Gip--~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I 84 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKK-----CGTS--VNSMALELYDDSGSKVAVLSDDSRPLGFFSP 84 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHH-----HCCC--TTSEEEEEECSSSCBCCCSSGGGSCHHHHCC
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHH-----HCcC--HHHeEEEEecCCCcccceecCCcCCHHHCCC
Confidence 57888888875443 23578999999999999999999 3333 99999999984 3 599999999999
Q ss_pred CCCCcCCceEEEEEEEc
Q 033172 76 PYGEVPGGVIIMHVVVQ 92 (125)
Q Consensus 76 ~~gd~~~~~~tmhlv~~ 92 (125)
.+| .++||+-.
T Consensus 85 ~~g------~~Ihlvd~ 95 (97)
T 2kj6_A 85 FDG------FRLHIIDL 95 (97)
T ss_dssp CSC------CEEEEEEC
T ss_pred CCC------CEEEEEeC
Confidence 999 78998753
No 80
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.44 E-value=3e-13 Score=109.39 Aligned_cols=73 Identities=23% Similarity=0.399 Sum_probs=64.4
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
..++|.++..+|+.+ .+++++++||++||++|++. +| +++|||+|+||.|+|+.+|++|+|.++
T Consensus 232 ~~MqI~VKtl~Gk~~-~leV~~s~TV~dLK~kI~~~~GIp---------~~~QRLi~~Gk~L~D~~TLsdygI~~g---- 297 (307)
T 3ai5_A 232 GSMQIFVKTLTGKTI-TLEVEPSDTIENVKAKIQDKEGIP---------PDQQRLIFAGKQLEDGRTLSDYNIQKE---- 297 (307)
T ss_dssp CCEEEEEECTTSCEE-EEEECTTCBHHHHHHHHHHHHCCC---------GGGCEEEETTEECCTTSBTGGGTCCTT----
T ss_pred CeEEEEEEeCCCCEE-EEEECCCCcHHHHHHHHHHHHCcC---------hHHEEEEeCCeecCCCCCHHHcCCCCC----
Confidence 457888888888655 78999999999999999998 55 999999999999999999999999988
Q ss_pred ceEEEEEEEcc
Q 033172 83 GVIIMHVVVQP 93 (125)
Q Consensus 83 ~~~tmhlv~~~ 93 (125)
+++||++|.
T Consensus 298 --stL~LvlRL 306 (307)
T 3ai5_A 298 --STLHLVLRL 306 (307)
T ss_dssp --CEEEEEC--
T ss_pred --CEEEEEEeC
Confidence 689999875
No 81
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.43 E-value=4.9e-13 Score=90.24 Aligned_cols=78 Identities=18% Similarity=0.152 Sum_probs=62.5
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC---ee----cCCCCccccCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIP 76 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G---r~----L~D~~tL~~~~i~ 76 (125)
+..|.|.++........++++++++||++||++|++. +.+| +++|||+|.| +. |+|+++|++|+|.
T Consensus 5 ~~~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~-----~gip--~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~ 77 (95)
T 1v6e_A 5 SSGVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELV-----VGSP--ASCMELELYGADDKFYSKLDQEDALLGSYPVD 77 (95)
T ss_dssp CCCEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHH-----TCSC--TTTCBCEEECSSSCEEEECCCSSSBTTSSSCC
T ss_pred CcEEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHH-----HCCC--HHHeEEEEeCCCCccccccCCCcCCHhHCCCC
Confidence 5668888877555323578999999999999999999 2333 9999999987 43 5899999999999
Q ss_pred CCCcCCceEEEEEEEccC
Q 033172 77 YGEVPGGVIIMHVVVQPS 94 (125)
Q Consensus 77 ~gd~~~~~~tmhlv~~~~ 94 (125)
+| .++||+-..|
T Consensus 78 ~g------~~l~v~d~~P 89 (95)
T 1v6e_A 78 DG------CRIHVIDHSG 89 (95)
T ss_dssp TT------CEEEEBCCSC
T ss_pred CC------CEEEEEECCc
Confidence 98 6899876433
No 82
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.41 E-value=1.9e-14 Score=109.49 Aligned_cols=73 Identities=18% Similarity=0.242 Sum_probs=1.7
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIM 87 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tm 87 (125)
+|.+++.+|..+ .++|++++||.+||++|++. +.+| +++|||||+|++|+|+.||+ .+ +||
T Consensus 2 qI~VKtL~Gkti-tLeV~~sdTV~~LK~kI~~k-----eGIP--~~qQRLIf~GK~LeD~~TLs-----~~------STL 62 (189)
T 2xzm_9 2 QVQVKTLEGETK-IYTLEQGTSVLDLKSQISQD-----MGFE--IDMMTLVNNGFIAPNTELVT-----DD------VTY 62 (189)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEcCCCCEE-EEEECCcChHHHHHHHHHHH-----hCcC--hhHEEEEecCeECCCCCccc-----CC------CEE
Confidence 567777888544 78999999999999999998 2333 99999999999999999998 45 689
Q ss_pred EEEEccCCccCC
Q 033172 88 HVVVQPSLAKTK 99 (125)
Q Consensus 88 hlv~~~~~~~kk 99 (125)
||++++.++.++
T Consensus 63 hLvlRLrGG~~k 74 (189)
T 2xzm_9 63 YLSLKLLGGKKK 74 (189)
T ss_dssp ---------CCC
T ss_pred EEEEecCCCccc
Confidence 999999887663
No 83
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.38 E-value=3.4e-12 Score=90.04 Aligned_cols=77 Identities=12% Similarity=0.132 Sum_probs=61.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC---ee----cCCCCccccCCCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG---KI----LENNKTVGQCKIPYG 78 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G---r~----L~D~~tL~~~~i~~g 78 (125)
.|.|.++...+....++++++++||++||++|++. +++| +++|||+|.| +. ++|+++|++|+|..|
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~-----~Gip--~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g 78 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELV-----VGTT--VDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDG 78 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHH-----HCCC--TTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSS
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHH-----hCCC--HHHeEEEEecCCCccccccCCCcCCHHHCCCCCC
Confidence 57777766544213478999999999999999999 2233 9999999988 42 589999999999998
Q ss_pred CcCCceEEEEEEEccCC
Q 033172 79 EVPGGVIIMHVVVQPSL 95 (125)
Q Consensus 79 d~~~~~~tmhlv~~~~~ 95 (125)
.++||+...++
T Consensus 79 ------~~ihvvd~~p~ 89 (122)
T 1t0y_A 79 ------YRIHAVDVTGG 89 (122)
T ss_dssp ------EEEEEEECTTC
T ss_pred ------CEEEEEeCCCC
Confidence 89999875444
No 84
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=8e-13 Score=91.14 Aligned_cols=76 Identities=16% Similarity=0.306 Sum_probs=60.8
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe--cCeecCCCCccccCCCCCCCcCCce
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~--~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
+.+++++ .|+.+ .+++++++||++||++|++. +.+| +++|||+| .|+ |+|+.+|++|+|+.|
T Consensus 10 ~~~~vk~-~Gk~~-~v~v~~~~TV~~LK~~I~~~-----tgIp--p~~QkLi~~~~gk-L~D~~tLs~~~I~~g------ 73 (100)
T 2dzm_A 10 LDFRVEY-RDRNV-DVVLEDTCTVGEIKQILENE-----LQIP--VSKMLLKGWKTGD-VEDSTVLKSLHLPKN------ 73 (100)
T ss_dssp EEEEEEC-SSCEE-EEEEETTSBHHHHHHHHHHH-----HCCC--TTTCCEECCSSSC-CCTTSBHHHHCCCSE------
T ss_pred EEEEEEe-CCeEE-EEEECCCCcHHHHHHHHHHH-----HCCC--hhHeEEEccCCCC-CCCcCCHHHcCCCCC------
Confidence 3444444 56454 78999999999999999999 3333 89999997 676 999999999999988
Q ss_pred EEEEEEEccCCccC
Q 033172 85 IIMHVVVQPSLAKT 98 (125)
Q Consensus 85 ~tmhlv~~~~~~~k 98 (125)
++|||+++...+.-
T Consensus 74 stL~lvl~~~~~~~ 87 (100)
T 2dzm_A 74 NSLYVLTPDLPPPS 87 (100)
T ss_dssp EEEEECCSSSCCCC
T ss_pred CEEEEEecCCCCCc
Confidence 89999988766443
No 85
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.37 E-value=8.3e-13 Score=91.16 Aligned_cols=76 Identities=16% Similarity=0.215 Sum_probs=64.0
Q ss_pred CCeEEEEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe-----------e----cCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-----------I----LENN 67 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr-----------~----L~D~ 67 (125)
.+.+.||||..+|.. .++++ +++||.+||++|++.. .+| +++|||+|.|+ . ++|+
T Consensus 5 ~~~M~irvrs~~G~~--~v~v~~~~~Tv~~LK~kI~~~~-----gip--~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~ 75 (107)
T 1wf9_A 5 SSGTMLRVRSRDGLE--RVSVDGPHITVSQLKTLIQDQL-----QIP--IHNQTLSTNRNLLLAKSPSDFLAFTDMADPN 75 (107)
T ss_dssp CCCEEEEEECSSCEE--EEEECCTTSBHHHHHHHHHHHS-----CCC--TTTCCCBSSGGGGTCCSHHHHTTCCSSCCTT
T ss_pred CCeEEEEEECCCCCE--EEEECCCCCcHHHHHHHHHHHh-----CcC--cccCEEEECCccccccCccccccccccCCCC
Confidence 566889999999943 47899 9999999999999982 233 89999999998 4 6899
Q ss_pred CccccCCCCCCCcCCceEEEEEEEccC
Q 033172 68 KTVGQCKIPYGEVPGGVIIMHVVVQPS 94 (125)
Q Consensus 68 ~tL~~~~i~~gd~~~~~~tmhlv~~~~ 94 (125)
++|++|+|..| .++||+....
T Consensus 76 ~tL~~~gi~~G------~~L~l~~~~~ 96 (107)
T 1wf9_A 76 LRISSLNLAHG------SMVYLAYEGE 96 (107)
T ss_dssp CBGGGTCCCTT------CEEECCCSSC
T ss_pred CCHHHCCCCCC------CEEEEEeCCC
Confidence 99999999999 6899977643
No 86
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.36 E-value=2.8e-12 Score=87.20 Aligned_cols=77 Identities=17% Similarity=0.238 Sum_probs=69.2
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
++.++|+++..+|+.+ .+.|.+++++..|++.++++ +| ++++||+|.|+.|++++|++++++.++
T Consensus 5 ~~~i~ikVk~~~g~~i-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg--- 71 (94)
T 2io1_B 5 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE--- 71 (94)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEECCCCHHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC---
Confidence 5789999999999766 68999999999999999998 55 899999999999999999999999999
Q ss_pred CceEEEEEEEccCCc
Q 033172 82 GGVIIMHVVVQPSLA 96 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~ 96 (125)
.+||++++..++
T Consensus 72 ---D~Idv~~~~~GG 83 (94)
T 2io1_B 72 ---DTIDVFQQQTGG 83 (94)
T ss_dssp ---CEEEEEECCEES
T ss_pred ---CEEEEEEeccCC
Confidence 589999987765
No 87
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=1.3e-11 Score=83.51 Aligned_cols=78 Identities=17% Similarity=0.228 Sum_probs=69.3
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
++.++|+++..+|+.+ .+.|.+++++..|++..+++ +| ++++||+|.|+.|++++|++++++.+|
T Consensus 3 ~~~i~ikVk~~~g~~v-~~~vk~~t~l~kl~~~y~~~~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg--- 69 (91)
T 2io0_B 3 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE--- 69 (91)
T ss_dssp -CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHTTCC---------STTEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC---
Confidence 4679999999999766 69999999999999999998 44 899999999999999999999999999
Q ss_pred CceEEEEEEEccCCcc
Q 033172 82 GGVIIMHVVVQPSLAK 97 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~~ 97 (125)
.+||++.+..++.
T Consensus 70 ---D~Idv~~~q~gg~ 82 (91)
T 2io0_B 70 ---DTIDVFQQQTGGV 82 (91)
T ss_dssp ---EEEEEEECCCCCC
T ss_pred ---CEEEEEEeccCCc
Confidence 6899998877653
No 88
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.26 E-value=8.5e-12 Score=100.97 Aligned_cols=78 Identities=18% Similarity=0.280 Sum_probs=62.0
Q ss_pred CCCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE---ecCeecCCCCccccCCCCCCC
Q 033172 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 3 ~~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI---~~Gr~L~D~~tL~~~~i~~gd 79 (125)
+++.++|+++. +|+. ..+++++++||++||++|++. +++| +++|||| |+|+.|+|+.+|++|+|++|
T Consensus 2 ~~~~i~i~Vk~-~g~~-~~v~v~~~~Tv~~lK~~I~~~-----tgVp--p~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g- 71 (320)
T 3shq_A 2 EVKEVVVIVKW-SGKE-YPVDLTDQDTVEVLRHEIFRK-----TQVR--PERQKLLNLKYKGKTAADNVKISALELKPN- 71 (320)
T ss_dssp --CEEEEEEEE-TTEE-EEEEEETTSBHHHHHHHHHHH-----HCCC--GGGCEETTCBSSSSBCCTTSBTTSSCCC---
T ss_pred CCceEEEEEEE-CCEE-EEEEECCCCcHHHHHHHHHHH-----HCcC--HHHeEEeecccCCcccCccccHHHcCCCCC-
Confidence 35678888886 5644 479999999999999999998 2333 9999999 89999999999999999999
Q ss_pred cCCceEEEEEEEccCC
Q 033172 80 VPGGVIIMHVVVQPSL 95 (125)
Q Consensus 80 ~~~~~~tmhlv~~~~~ 95 (125)
.++||+-.+..
T Consensus 72 -----~~l~L~gs~~~ 82 (320)
T 3shq_A 72 -----FKLMMVGSTEA 82 (320)
T ss_dssp -----CEEEEECCCC-
T ss_pred -----CEEEEEccchh
Confidence 68998766543
No 89
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.25 E-value=5.9e-11 Score=80.34 Aligned_cols=76 Identities=17% Similarity=0.239 Sum_probs=66.7
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
++.|+|+++..+|+.+ .+.|.+++++..|++.++++ +| ++++||+|.|+.|.+++|++++++.+|
T Consensus 15 ~~~i~ikV~~~~g~~i-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~dl~medg--- 81 (93)
T 2d07_B 15 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE--- 81 (93)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEEccCCHHHHHHHHHHHHhCCC---------ccceEEEECCEEcCCCCCHHHcCCCCC---
Confidence 3688888888889665 68999999999999999988 55 899999999999999999999999999
Q ss_pred CceEEEEEEEccCC
Q 033172 82 GGVIIMHVVVQPSL 95 (125)
Q Consensus 82 ~~~~tmhlv~~~~~ 95 (125)
.+||++++..+
T Consensus 82 ---D~Idv~~~q~G 92 (93)
T 2d07_B 82 ---DTIDVFQQQTG 92 (93)
T ss_dssp ---EEEEEEECC--
T ss_pred ---CEEEEEeeccC
Confidence 68999887654
No 90
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=7.3e-11 Score=81.74 Aligned_cols=78 Identities=17% Similarity=0.242 Sum_probs=69.4
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
.+.|+|+++..+|+.+ .+.|.+++++..|++.++++ +| ++++||+|.|+.|.+++|++++++.++
T Consensus 22 ~~~I~IkVk~~~g~~i-~~kVk~~t~l~kL~~~y~ek~gi~---------~~~~rf~FdG~~l~~~~Tp~dl~medg--- 88 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE--- 88 (104)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSCHHHHHHHHHHHHTCC---------TTTSCEESSSSBCCTTSCTTTTTCCTT---
T ss_pred CCeEEEEEECCCCCEE-EEEEcCCChHHHHHHHHHHHhCCC---------cceEEEEECCEEcCCCCCHHHcCCCCC---
Confidence 3688999998899765 69999999999999999988 55 889999999999999999999999999
Q ss_pred CceEEEEEEEccCCcc
Q 033172 82 GGVIIMHVVVQPSLAK 97 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~~ 97 (125)
.+||++++..++.
T Consensus 89 ---D~Idv~~~q~GG~ 101 (104)
T 1wz0_A 89 ---DTIDVFQQQTSGP 101 (104)
T ss_dssp ---EEEEECCCCCCCS
T ss_pred ---CEEEEEEeccCCC
Confidence 6899988876654
No 91
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.21 E-value=1.4e-11 Score=81.54 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=57.9
Q ss_pred EEEEEeCCCCeeeeEE-eCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecC---CCCccccCCCCCCCcC
Q 033172 8 DIKFRLYDGSDIGPFR-YSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILE---NNKTVGQCKIPYGEVP 81 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~-v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L~---D~~tL~~~~i~~gd~~ 81 (125)
+|++|+.+|..+ +. +++++||.+||++|+++. .+| +++|||+|.+ |.|+ |+.+|++|||..|
T Consensus 2 ~i~vr~~~G~~~--v~~l~~~~Tv~~Lk~~I~~~~-----gi~--~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g--- 69 (86)
T 2kzr_A 2 RVRCKAKGGTHL--LQGLSSRTRLRELQGQIAAIT-----GIA--PGSQRILVGYPPECLDLSDRDITLGDLPIQSG--- 69 (86)
T ss_dssp CEEEEETTEEEE--ECSCCTTCBHHHHHHHHHHHT-----CCC--TTTCCCEESSCCCCCCCCCSSCBTTTSSCCTT---
T ss_pred EEEEEcCCCCEE--eeecCCCCCHHHHHHHHHHHh-----CCC--ccceEEEeCCCCcccccCCCCCCHHHcCCCCC---
Confidence 588889999543 56 999999999999999981 222 8999999974 8874 7899999999988
Q ss_pred CceEEEEEEEcc
Q 033172 82 GGVIIMHVVVQP 93 (125)
Q Consensus 82 ~~~~tmhlv~~~ 93 (125)
.++||....
T Consensus 70 ---~~l~v~~~~ 78 (86)
T 2kzr_A 70 ---DMLIVEEDQ 78 (86)
T ss_dssp ---CEEECCCCS
T ss_pred ---CEEEEEeCC
Confidence 688986553
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.18 E-value=1.4e-10 Score=74.67 Aligned_cols=68 Identities=18% Similarity=0.268 Sum_probs=61.3
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCce
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGV 84 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~ 84 (125)
++|+++..+|+.+ .+.+.+++++..|++..+++ +| ++++||+|.|+.|++++|++++++.+|
T Consensus 2 i~lkV~~~~g~~v-~~~v~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~~l~medg------ 65 (72)
T 1wm3_A 2 INLKVAGQDGSVV-QFKIKRHTPLSKLMKAYCERQGLS---------MRQIRFRFDGQPINETDTPAQLEMEDE------ 65 (72)
T ss_dssp EEEEEECTTSCEE-EEEECTTSCTHHHHHHHHHHHTCC---------TTTCEEEETTEECCTTCCTTTTTCCTT------
T ss_pred EEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cceEEEEECCEEcCCCCCHHHcCCCCC------
Confidence 6788888899766 79999999999999999988 55 899999999999999999999999999
Q ss_pred EEEEEE
Q 033172 85 IIMHVV 90 (125)
Q Consensus 85 ~tmhlv 90 (125)
.++|+.
T Consensus 66 D~Idv~ 71 (72)
T 1wm3_A 66 DTIDVF 71 (72)
T ss_dssp EEEEEE
T ss_pred CEEEEE
Confidence 678875
No 93
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.14 E-value=1.4e-10 Score=81.20 Aligned_cols=76 Identities=16% Similarity=0.276 Sum_probs=68.6
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
+.|+|+++..+|+.+ .+.|.+++++..|++..+++ +| ++++||+|.|+.|.+++|++++++.++
T Consensus 25 ~~I~IkVk~~~g~~i-~fkVk~~t~l~kL~~ay~ek~gi~---------~~~~rfiFdG~~L~~~~Tp~dl~mEDg---- 90 (110)
T 2k8h_A 25 ALVAVKVVNADGAEM-FFRIKSRTALKKLIDTYCKKQGIS---------RNSVRFLFDGTPIDETKTPEELGMEDD---- 90 (110)
T ss_dssp CCEEEEEEETTSCCE-EEEECTTSSHHHHHHHHHHHHTCC---------SSSCEEESSSCBCCSSSHHHHHHCSSE----
T ss_pred CeEEEEEECCCCCEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC----
Confidence 679999999999766 79999999999999999988 55 889999999999999999999999999
Q ss_pred ceEEEEEEEccCCc
Q 033172 83 GVIIMHVVVQPSLA 96 (125)
Q Consensus 83 ~~~tmhlv~~~~~~ 96 (125)
.+||+++...++
T Consensus 91 --D~Idv~~~q~Gg 102 (110)
T 2k8h_A 91 --DVIDAMVEQTGG 102 (110)
T ss_dssp --EEEEEECCCCCC
T ss_pred --CEEEEEEcccCc
Confidence 689998887654
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.13 E-value=3e-10 Score=74.54 Aligned_cols=71 Identities=10% Similarity=0.145 Sum_probs=63.5
Q ss_pred CCeEEEEEEeCCCC-eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172 4 EELIDIKFRLYDGS-DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (125)
Q Consensus 4 ~~~v~l~~~~~~g~-~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~ 80 (125)
.+.++|+++..+|+ .+ .+.+.+++++..|++..+++ +| ++++||+|.|+.|++++|++++++.+|
T Consensus 5 ~~~i~ikV~~~~g~~~i-~~~i~~~t~l~kl~~~y~~~~gi~---------~~~~rf~fdG~~l~~~~Tp~~l~medg-- 72 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQML-EISLSPDSPLKVLMSHYEEAMGLS---------GHKLSFFFDGTKLSGKELPADLGLESG-- 72 (79)
T ss_dssp CCCEEEEEECSSTTCEE-EEEECTTSCHHHHHHHHHHHHTCT---------TCCCEEEETTEECCSCCCHHHHTCCTT--
T ss_pred CCEEEEEEEeCCCCEEE-EEEECCCChHHHHHHHHHHHhCCC---------cccEEEEECCEEcCCCCCHHHcCCCCC--
Confidence 57899999999995 55 68999999999999999988 55 789999999999999999999999999
Q ss_pred CCceEEEEEE
Q 033172 81 PGGVIIMHVV 90 (125)
Q Consensus 81 ~~~~~tmhlv 90 (125)
.+||+.
T Consensus 73 ----D~Idv~ 78 (79)
T 3a4r_A 73 ----DLIEVW 78 (79)
T ss_dssp ----CEEEEE
T ss_pred ----CEEEEe
Confidence 467763
No 95
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=99.13 E-value=4e-10 Score=78.41 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=65.7
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
.+.|+|+++. +|+.+ .+.|.+++++..|++..+++ ++ ++++||+|.|+.|++++|++++++.++
T Consensus 29 ~~~I~IkV~~-~g~~i-~fkIk~tt~l~kL~~ay~ek~gi~---------~~~~rF~FdG~rl~~~~Tp~dl~medg--- 94 (106)
T 2eke_C 29 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN--- 94 (106)
T ss_dssp CSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred CCeEEEEEec-CCcEE-EEEeCCCCHHHHHHHHHHHHhCCC---------cccEEEEECCeEcCCCCCHHHcCCCCC---
Confidence 3778999988 88665 68999999999999999988 54 899999999999999999999999999
Q ss_pred CceEEEEEEEccCC
Q 033172 82 GGVIIMHVVVQPSL 95 (125)
Q Consensus 82 ~~~~tmhlv~~~~~ 95 (125)
.+||++++..+
T Consensus 95 ---D~Idv~~~q~G 105 (106)
T 2eke_C 95 ---DIIEAHREQIG 105 (106)
T ss_dssp ---EEEEEEECC--
T ss_pred ---CEEEEEeeccc
Confidence 68999887654
No 96
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.97 E-value=4e-09 Score=70.97 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=60.6
Q ss_pred CCeEEEEEEeC---CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC------ee-c-CCCCcccc
Q 033172 4 EELIDIKFRLY---DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG------KI-L-ENNKTVGQ 72 (125)
Q Consensus 4 ~~~v~l~~~~~---~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G------r~-L-~D~~tL~~ 72 (125)
+..|+|+++.. +| ...+..+++++||.+||++|+..+ ..| ++.|||.|.+ .. | +|.++|+.
T Consensus 7 ~~~v~l~I~~~~~~~~-~~~e~~l~~~~TV~~LK~~i~~~~-----gip--~~~q~L~~~~~~~~~~~~~L~~d~~~L~~ 78 (97)
T 1wjn_A 7 GQLLTLKIKCSNQPER-QILEKQLPDSMTVQKVKGLLSRLL-----KVP--VSELLLSYESSKMPGREIELENDLQPLQF 78 (97)
T ss_dssp SCEEEEEEEESSCSSS-CCEEEEEETTSBHHHHHHHHHTTT-----TCC--TTTCEEEEECTTSCSCEEECCCSSSBSGG
T ss_pred CccEEEEEEecCCCCC-cEEEEECCCCCCHHHHHHHHHHHH-----CCC--hhHeEEEEEcCCCCceeeccCCCcccHhh
Confidence 45688888763 45 445789999999999999999992 223 8999999873 22 5 78999999
Q ss_pred CCCCCCCcCCceEEEEEEEccC
Q 033172 73 CKIPYGEVPGGVIIMHVVVQPS 94 (125)
Q Consensus 73 ~~i~~gd~~~~~~tmhlv~~~~ 94 (125)
|++.+| .++||....+
T Consensus 79 y~i~~G------~~I~V~d~~p 94 (97)
T 1wjn_A 79 YSVENG------DCLLVRWSGP 94 (97)
T ss_dssp GTCCTT------CEEEEECCSS
T ss_pred cCCCCC------CEEEEEecCC
Confidence 999999 6899877543
No 97
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.75 E-value=5.7e-08 Score=68.52 Aligned_cols=73 Identities=19% Similarity=0.313 Sum_probs=64.6
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPG 82 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~ 82 (125)
+.|+|+++..+|+.+ .|.|.+++++..|++...++ ++ ++++||+|.|+.|+++.|.+++++.+|
T Consensus 39 ~~I~LKV~~qdg~ev-~fkIk~tt~L~KLm~aY~er~Gl~---------~~~irFlFDG~rI~~~~TP~dL~MEDg---- 104 (115)
T 3kyd_D 39 EYIKLKVIGQDSSEI-HFKVKMTTHLKKLKESYCQRQGVP---------MNSLRFLFEGQRIADNHTPKELGMEEE---- 104 (115)
T ss_dssp CEEEEEEECTTSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------TTSEEEEETTEECCTTCCTTTTTCCTT----
T ss_pred CeEEEEEEcCCCCEE-EEEEccCChHHHHHHHHHHHhCCC---------hhhEEEEECCeECCCCCCHHHcCCCCC----
Confidence 678888888889775 68999999999999999988 54 899999999999999999999999999
Q ss_pred ceEEEEEEEcc
Q 033172 83 GVIIMHVVVQP 93 (125)
Q Consensus 83 ~~~tmhlv~~~ 93 (125)
.+|+++.+.
T Consensus 105 --D~IdV~~~Q 113 (115)
T 3kyd_D 105 --DVIEVYQEQ 113 (115)
T ss_dssp --CEEEEEECC
T ss_pred --CEEEEEeec
Confidence 468877654
No 98
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.65 E-value=2e-07 Score=71.30 Aligned_cols=79 Identities=13% Similarity=0.181 Sum_probs=68.6
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
++.|+|+++ .+|..+ .+.|.+++++..|++...++ .| ++++||+|.|+.|++++|.+++++.+|
T Consensus 27 ~~~I~LkV~-~~g~~v-~fkIk~~t~l~kL~~ay~er~Gi~---------~~~~RF~FdG~rI~~~~TP~dL~MEdg--- 92 (200)
T 3pge_A 27 ETHINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN--- 92 (200)
T ss_dssp CCCEEEEEE-CSSCEE-EEEECTTSCTHHHHHHHHHHHSSC---------GGGEEEEETTEECCTTCCTTTTTCCTT---
T ss_pred CCeEEEEEe-cCCCEE-EEEEecCCHHHHHHHHHHHHhCCC---------hhhEEEEECCEEcCCCCCHHHcCCCCC---
Confidence 466888887 477554 79999999999999999988 54 899999999999999999999999999
Q ss_pred CceEEEEEEEccCCccCC
Q 033172 82 GGVIIMHVVVQPSLAKTK 99 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~~kk 99 (125)
.+||++.+.-++.+.
T Consensus 93 ---D~Idv~~~q~gg~kd 107 (200)
T 3pge_A 93 ---DIIEAHREQIGGGGE 107 (200)
T ss_dssp ---EEEEEEECCSCCC-C
T ss_pred ---CEEEEEeccCcCcCc
Confidence 689999998887653
No 99
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.48 E-value=4.5e-07 Score=69.45 Aligned_cols=79 Identities=13% Similarity=0.165 Sum_probs=68.7
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVP 81 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~ 81 (125)
++.|+|+++ .+|..+ .|.|.+++++..|++...++ +| ++++||+|.|+.|++++|.+++++.+|
T Consensus 55 ~e~InLKVk-~dG~eV-~FKIKrtTpL~KLmeAYcERqGL~---------~~sIRFLFDGqRI~~ddTPeDLdMEDG--- 120 (207)
T 3tix_A 55 ETHINLKVS-DGSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLTFLYDGIEIQADQTPEDLDMEDN--- 120 (207)
T ss_dssp CCEEEEEEE-CSSCEE-EEEEETTSCTHHHHHHHHHHTTCC---------GGGSCEEETTEECCSSCCTTTTTCCTT---
T ss_pred CCcEEEEEe-cCCCEE-EEEEccCChHHHHHHHHHHHhCCC---------cccEEEEECCeecCCCCCHHHcCCCCC---
Confidence 467888886 577665 69999999999999999998 44 899999999999999999999999999
Q ss_pred CceEEEEEEEccCCccCC
Q 033172 82 GGVIIMHVVVQPSLAKTK 99 (125)
Q Consensus 82 ~~~~tmhlv~~~~~~~kk 99 (125)
.+|+++++..++..+
T Consensus 121 ---DtIDV~leQ~GG~~~ 135 (207)
T 3tix_A 121 ---DIIEAHREQIGGLPS 135 (207)
T ss_dssp ---EEEEECCCCCTTGGG
T ss_pred ---CEEEEEEeccCCCcc
Confidence 689998888777543
No 100
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.06 E-value=5.5e-07 Score=69.83 Aligned_cols=79 Identities=13% Similarity=0.146 Sum_probs=1.1
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
++.|+|++ ..+|+.+ .|.|.+++.+..|++...++. ..| ++++||+|.|+.|.+++|.+++++.+|
T Consensus 19 ~e~InLKV-~qdGseV-~FKIKrtTpL~KLM~AYcERq-----GLs--~~siRFLFDGqRI~dddTPadL~MEDG----- 84 (227)
T 3v7o_A 19 ETHINLKV-SDGSSEI-FFKIKKTTPLRRLMEAFAKRQ-----GKE--MDSLRFLYDGIRIQADQTPEDLDMEDN----- 84 (227)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEE-eCCCCEE-EEEEccCChHHHHHHHHHHHh-----CCC--ccceEEEECCEecCCCCCHHHcCCCCC-----
Confidence 47788888 6677555 699999999999999988881 222 899999999999999999999999999
Q ss_pred eEEEEEEEccCCcc
Q 033172 84 VIIMHVVVQPSLAK 97 (125)
Q Consensus 84 ~~tmhlv~~~~~~~ 97 (125)
.+|+++.+..++.
T Consensus 85 -DtIDV~leQ~GG~ 97 (227)
T 3v7o_A 85 -DIIEAHREQIGGL 97 (227)
T ss_dssp ------------CC
T ss_pred -CEEEEEecccCCc
Confidence 5789888877764
No 101
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.05 E-value=1.8e-05 Score=53.83 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=41.4
Q ss_pred EEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecC--CCCccccC
Q 033172 11 FRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE--NNKTVGQC 73 (125)
Q Consensus 11 ~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~--D~~tL~~~ 73 (125)
|.+..+ ....+.+.+++||..+|++|+++ +++| +++|+|||.|+.|. .+..-..|
T Consensus 18 f~~~~a-~~h~v~I~~~etv~~~ke~V~eq-----TgIp--~~~Q~LL~eg~~l~l~p~~~a~~~ 74 (94)
T 4efo_A 18 FSLQQM-TAHKIYIHSYNTATIFHELVYKQ-----TKII--SSNQELIYEGRRLVLEPGRLAQHF 74 (94)
T ss_dssp EETTTT-EEEEEEEETTCBHHHHHHHHHHH-----HCCC--GGGEEEEETTEEECCCTTCBGGGS
T ss_pred EEcccc-eEEEEEeccchHHHHHHHHHHHH-----hCCC--HHHHHHHhCCCccccCCCCccccC
Confidence 334555 55679999999999999999999 3333 99999999998764 44444444
No 102
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.92 E-value=8.2e-05 Score=48.61 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=55.8
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEEe--cCeec---CCCCccccCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLIS--SGKIL---ENNKTVGQCKIPY 77 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI~--~Gr~L---~D~~tL~~~~i~~ 77 (125)
+...+|+||+.+|+.+ .-.|..++||.+|.+.|... .+ ....+|+. =.|.| +.++||+++|+..
T Consensus 5 ~~~~~i~iRlpdG~r~-~~~F~~~~tl~~v~~fv~~~~~~---------~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p 74 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFL-ERRFLASNKLQIVFDFVASKGFP---------WDEYKLLSTFPRRDVTQLDPNKSLLEVKLFP 74 (84)
T ss_dssp CCEEEEEEECTTSCEE-EEEEETTSBHHHHHHHHHHTTCC---------TTTEEEECSSSCCBGGGSCTTSBTTTTTCCS
T ss_pred CCeEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHcCCC---------CCCeEEEeCCCCCCCcCCCCCCCHHHCCCCC
Confidence 6778999999999765 56999999999999999886 22 56677873 36777 4588999999986
Q ss_pred CCcCCceEEEEE
Q 033172 78 GEVPGGVIIMHV 89 (125)
Q Consensus 78 gd~~~~~~tmhl 89 (125)
+ .+++|
T Consensus 75 ~------a~L~v 80 (84)
T 3qx1_A 75 Q------ETLFL 80 (84)
T ss_dssp E------EEEEE
T ss_pred C------CEEEE
Confidence 6 56665
No 103
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.89 E-value=4.4e-06 Score=54.76 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=47.3
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCee-----cCCCCccccCCCCCCCc
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI-----LENNKTVGQCKIPYGEV 80 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~-----L~D~~tL~~~~i~~gd~ 80 (125)
.+.||||..+|.. .+++++++||.+|+++|++..+ +| ++.+.|.++-.. +.++.+|+++||+.||.
T Consensus 4 ~m~lRvrs~~G~~--Ri~v~~~~t~~~L~~~I~~~~~-----i~--~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~ 74 (80)
T 2pjh_A 4 SIIIRVQSPDGVK--RITATKRETAATFLKKVAKEFG-----FQ--NNGFSVYINRNKTGEITASSSKSLHLLKIKHGDL 74 (80)
T ss_dssp CCCCEEECSSEEE--ECCCCSSCCHHHHHHHHHHHTC-----CC--TTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCC
T ss_pred cEEEEEECCCCCE--EEEcCCcChHHHHHHHHHHHcC-----CC--CCcceEEecCCCCCcccCCCCCCHHHcCCCCCCE
Confidence 3678999999943 4679999999999999999854 11 333333222222 34788999999999953
No 104
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.89 E-value=0.00011 Score=50.03 Aligned_cols=69 Identities=9% Similarity=0.105 Sum_probs=57.9
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+.|+|+++-.+|.....+.+..+++...|.+...++.- .+++.+||+|.|+.|..++|.+++++.+||
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g-------~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD 91 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMG-------LSGRKLSFFFDGTKLSGRELPADLGMESGD 91 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTT-------CSSSCCEEEETTEECCSCSCHHHHTCCTTE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHC-------CCcccEEEEECCEEcCCCCCHHHcCCCCCC
Confidence 478888888888852235899999999999999888822 127899999999999999999999999994
No 105
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.89 E-value=7.5e-05 Score=56.62 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=66.7
Q ss_pred CCCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCc
Q 033172 3 DEELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEV 80 (125)
Q Consensus 3 ~~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~ 80 (125)
+++.|+||++- +|..+ .+.+..++....|++..+++ +| ++++||+|.|+.+.+++|..++.+.++
T Consensus 18 ~~~~i~ikv~~-~~~~v-~~~i~~~~~l~kl~~~y~~~~g~~---------~~~~~f~fdG~~i~~~~Tpk~L~~ed~-- 84 (209)
T 3uf8_A 18 PETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQGKE---------MDSLRFLYDGIRIQADQTPEDLDMEDN-- 84 (209)
T ss_dssp CCSEEEEEEEC-SSCEE-EEEEETTSCTHHHHHHHHHHHTCC---------GGGCEEEETTEECCTTCCTTTTTCCTT--
T ss_pred CCCcEEEEEEc-CCCEE-EEEEeeCCHHHHHHHHHHHhhCCC---------hheEEEEECCEeccCCCChHHhhhccc--
Confidence 35788888875 66554 68999999999999999998 65 999999999999999999999999998
Q ss_pred CCceEEEEEEEccCCcc
Q 033172 81 PGGVIIMHVVVQPSLAK 97 (125)
Q Consensus 81 ~~~~~tmhlv~~~~~~~ 97 (125)
.+|++..+..++.
T Consensus 85 ----d~I~~~~eq~Gg~ 97 (209)
T 3uf8_A 85 ----DIIEAHREQIGGS 97 (209)
T ss_dssp ----EEEEEECSCTTCC
T ss_pred ----ccchhhccccccc
Confidence 5788777766653
No 106
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.75 E-value=0.00024 Score=47.10 Aligned_cols=66 Identities=21% Similarity=0.285 Sum_probs=54.5
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCc-eeEEEecCeecCCCCccccCCCCCCCc
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVT-EIKLISSGKILENNKTVGQCKIPYGEV 80 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~-~qrLI~~Gr~L~D~~tL~~~~i~~gd~ 80 (125)
..|.+-+|.....++ .+.+.++++|.+|-..-..+ +| ++ .+||.|-|..|+.++++++|.+.++|.
T Consensus 8 ~~~~~~~~~~~~~dl-~f~I~~~t~v~kLi~ayc~~~~I~---------~~~~IrllFDGdRLdp~~tp~DlemeD~D~ 76 (82)
T 3goe_A 8 KLITLLLRSSKSEDL-RLSIPVDFTVKDLIKRYCTEVKIS---------FHERIRLEFEGEWLDPNDQVQSTELEDEDQ 76 (82)
T ss_dssp CEEEEEEEESSSCCE-EEEEETTSBHHHHHHHHHHHHTCC---------CCTTCEEEETTEECCTTSBGGGSSCCTTCE
T ss_pred HHHHHhhhccCCCCe-EEEecCCCCHHHHHHHHHHHcCCC---------cCceEEEEEcCcccCccCChhhhCCcCCce
Confidence 346677777666577 58999999999987666655 65 66 999999999999999999999999963
No 107
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.63 E-value=6.8e-06 Score=67.66 Aligned_cols=80 Identities=13% Similarity=0.149 Sum_probs=1.3
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
++.|+|+++- +|+.+ .+.+..+++...|++...++. ..+ ++++|++|.|+.|.+++|.+++++.+|
T Consensus 19 ~~~I~LKV~~-~g~~v-~FkIk~~t~l~kLm~aY~~r~-----G~~--~~~~rFlFdG~rI~~~~TP~~L~MEDg----- 84 (360)
T 3ix6_A 19 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQ-----GKE--MDSLRFLYDGIRIQADQTPEDLDMEDN----- 84 (360)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCeEEEEEec-CCcEE-EEEEecCChHHHHHHHHHHHh-----CCC--cceEEEEECCeECCCCCChHHcCCCcc-----
Confidence 4677788775 55443 689999999999999988882 122 899999999999999999999999999
Q ss_pred eEEEEEEEccCCccC
Q 033172 84 VIIMHVVVQPSLAKT 98 (125)
Q Consensus 84 ~~tmhlv~~~~~~~k 98 (125)
.+|+++.+..++.+
T Consensus 85 -D~Idv~~~Q~g~~~ 98 (360)
T 3ix6_A 85 -DIIEAHREQIGGMR 98 (360)
T ss_dssp -------------CH
T ss_pred -chhhhhhccCchHH
Confidence 57899888888765
No 108
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=97.50 E-value=0.0012 Score=45.34 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=55.7
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe--cCeecC---CCCccccCCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILE---NNKTVGQCKIPYG 78 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~--~Gr~L~---D~~tL~~~~i~~g 78 (125)
....+|+||+.+|+.+ .-.|..++||.+|.+.|..... . ......|+- --|.|. .++||+++|+...
T Consensus 11 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~-----~--~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ps 82 (109)
T 2dzk_A 11 STIARIQFRLPDGSSF-TNQFPSDAPLEEARQFAAQTVG-----N--TYGNFSLATMFPRREFTREDYKRRLLDLELAPS 82 (109)
T ss_dssp SCCEEEEEECSSSCEE-EEEECTTSBHHHHHHHHHHHHT-----T--SSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSE
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhccC-----C--CCCceEEEcCCCCcCCcccccCCCHHHCCCCCc
Confidence 3679999999999765 5799999999999999998721 0 134455653 355675 3789999999866
Q ss_pred CcCCceEEEEEEEc
Q 033172 79 EVPGGVIIMHVVVQ 92 (125)
Q Consensus 79 d~~~~~~tmhlv~~ 92 (125)
.++++...
T Consensus 83 ------a~L~v~~~ 90 (109)
T 2dzk_A 83 ------ASVVLLPA 90 (109)
T ss_dssp ------EEEEEECC
T ss_pred ------eEEEEEEC
Confidence 66776443
No 109
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=97.41 E-value=0.00095 Score=46.97 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=51.9
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEEe--cCeec--C-CCCccccCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLIS--SGKIL--E-NNKTVGQCKIPY 77 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI~--~Gr~L--~-D~~tL~~~~i~~ 77 (125)
+..++|+||+.+|+.+ .-.|..++||.+|.+.|... .+ ....+|+. -.|.| + .++||.++++..
T Consensus 41 ~~~t~IqIRlPdG~rl-~~rF~~~~tl~~V~~fV~~~~~~---------~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~p 110 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKRE-QITLPEQAKLLALVKHVQSKGYP---------NERFELLTNFPRRKLSHLDYDITLQEAGLCP 110 (124)
T ss_dssp SCEEEEEEECTTSCEE-EEEEETTSCHHHHHHHHHHHHCC---------TTTEEEECSSSCCEETSSCSSSCTTTTTCCS
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEecCCCCcCCccCCCCCCHHHCCCCC
Confidence 4689999999999765 57999999999999999887 22 45566763 47777 3 489999999986
Q ss_pred C
Q 033172 78 G 78 (125)
Q Consensus 78 g 78 (125)
.
T Consensus 111 s 111 (124)
T 1wj4_A 111 Q 111 (124)
T ss_dssp S
T ss_pred c
Confidence 5
No 110
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.38 E-value=0.0016 Score=44.56 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=56.2
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh-CCCCCccCCCCCceeEEEe--cCeecC--CCCccccCCCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD-WPKGKTIVPKAVTEIKLIS--SGKILE--NNKTVGQCKIPYGE 79 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~-~p~~~~~~P~~~~~qrLI~--~Gr~L~--D~~tL~~~~i~~gd 79 (125)
..++|+||+.+|+.+ .-.|..++||.+|.+.|... +. ....+|+. =.|.|. .+.||+++|+...
T Consensus 22 ~~~~IqiRlpdG~r~-~rrF~~~~tl~~v~~fv~~~~~~---------~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~- 90 (109)
T 2cr5_A 22 EVVTVALRCPNGRVL-RRRFFKSWNSQVLLDWMMKVGYH---------KSLYRLSTSFPRRALEVEGGSSLEDIGITVD- 90 (109)
T ss_dssp SEEEEEEECTTSCEE-EEEEESSSBTHHHHHHHHHHTCC---------TTTEEEECSSSCCBCCCCSSCBHHHHTCSSC-
T ss_pred CcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHhcCCC---------CCCeEEEeCCCCcCCCCCCCCCHHHcCCCCC-
Confidence 579999999999765 56999999999999999977 22 45666764 366675 5899999999977
Q ss_pred cCCceEEEEEEEc
Q 033172 80 VPGGVIIMHVVVQ 92 (125)
Q Consensus 80 ~~~~~~tmhlv~~ 92 (125)
.+++|...
T Consensus 91 -----a~L~Ve~~ 98 (109)
T 2cr5_A 91 -----TVLNVEEK 98 (109)
T ss_dssp -----EEEEEEEC
T ss_pred -----eEEEEEeC
Confidence 66766443
No 111
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=97.18 E-value=0.0027 Score=50.99 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=54.5
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe------cCeecCCCCccccCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS------SGKILENNKTVGQCKIPY 77 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~------~Gr~L~D~~tL~~~~i~~ 77 (125)
|..++||+.+. + .+..+.|+|++||.++..+|.+++|. ..+.+.++=-|.- .|+.|++++||+.|++.+
T Consensus 1 ~~~~~~~~~~~-~-~~~~~~f~~~~~v~~~~~~i~e~~~~---~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~ 75 (371)
T 3ivf_A 1 MVALSLKISIG-N-VVKTMQFEPSTMVYDACRMIRERIPE---ALAGPPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRN 75 (371)
T ss_dssp -CCEEEEEEET-T-EEEEEEECTTCBHHHHHHHHHTTCGG---GGSSCGGGEEEEECCSSGGGCEECCTTSBGGGGTCCT
T ss_pred CccEEEEEEec-c-eeEEEEECCCCCHHHHHHHHHHhccc---ccCCCHHHCeEeccCCCCCcCEeccCCCCHHHhCCCC
Confidence 35688999998 3 66789999999999999999999872 1112244444433 477899999999999998
Q ss_pred CCc
Q 033172 78 GEV 80 (125)
Q Consensus 78 gd~ 80 (125)
++.
T Consensus 76 ~~~ 78 (371)
T 3ivf_A 76 GDT 78 (371)
T ss_dssp TCE
T ss_pred Cce
Confidence 854
No 112
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.18 E-value=5.6e-05 Score=61.53 Aligned_cols=80 Identities=11% Similarity=0.169 Sum_probs=0.0
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCc
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGG 83 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~ 83 (125)
++.|+|+++- +|..+ .|.+..+++...|++...++.- . +..++||+|.|+.|.+++|.+++++.+|
T Consensus 28 ~~~i~lkv~~-~~~~~-~~~i~~~~~~~~l~~~y~~~~g-----~--~~~~~~f~f~G~~i~~~~Tp~~l~med~----- 93 (389)
T 4da1_A 28 ETHINLKVSD-GSSEI-FFKIKKTTPLRRLMEAFAKRQG-----K--EMDSLRFLYDGIRIQADQAPEDLDMEDN----- 93 (389)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEEec-CCcEE-EEEECCCChHHHHHHHHHHHhC-----C--CcceEEEEECCEEcCCCCCHHHcCCCCC-----
Confidence 3667777765 55443 6899999999999999988832 2 2899999999999999999999999999
Q ss_pred eEEEEEEEccCCccC
Q 033172 84 VIIMHVVVQPSLAKT 98 (125)
Q Consensus 84 ~~tmhlv~~~~~~~k 98 (125)
.+|++++...++..
T Consensus 94 -d~i~~~~~q~gg~n 107 (389)
T 4da1_A 94 -DIIEAHREQIGGEN 107 (389)
T ss_dssp ---------------
T ss_pred -CEeeeeeccccccc
Confidence 46777766665544
No 113
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.17 E-value=0.00049 Score=45.48 Aligned_cols=71 Identities=23% Similarity=0.366 Sum_probs=55.7
Q ss_pred eEEEEEEe--CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 6 LIDIKFRL--YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 6 ~v~l~~~~--~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
-++|++.+ ..|+. ..+.++...||++|++.+.+.+.- +..+.+--++|+.-.|.+|.++++|++|++.+||
T Consensus 4 yI~ITidl~~y~~~~-~DLRIP~~~tvK~Li~~l~ea~~l--~~~~~~~~~irv~NK~~~L~~~~~L~d~~ItnGD 76 (81)
T 2bps_A 4 YIDITIDLKHYNGSV-FDLRLSDYHPVKKVIDIAWQAQSV--SMPPREGHWIRVVNKDKVFSGECKLSDCGITNGD 76 (81)
T ss_dssp EEEEEEECTTTTCCE-EEEEEETTSBTTHHHHHHHHHSCC--CSCCCTTCEEEEGGGTEEEETTSBTGGGTCCTTC
T ss_pred EEEEEEEeeccCCce-EEEECCCchhHHHHHHHHHHHhCC--CcCCCCCCEEEEecCCEEEcCCCEEeeCCcCCCC
Confidence 35666666 56644 589999999999999999998431 1222222689999999999999999999999995
No 114
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.12 E-value=0.0032 Score=42.86 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=55.8
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
++.|+|+++ .+|.. .-|.+-.++....|.+...++ .+ ++++|++|.|..+.++.|.+++++.+||
T Consensus 19 ~~~IniKV~-~~g~e-v~FkIK~tt~l~KL~~aYc~r~gv~---------~~sirFlfDG~rI~~~~TP~~L~meD~D 85 (95)
T 2l76_A 19 PRLFPLKIR-CRADL-VRLPLRMSEPLQSVVDHMATHLGVS---------PSRILLLFGETELSPTATPRTLKLGVAD 85 (95)
T ss_dssp CCCEEEEEE-CSSSE-EEEEECSSSCTHHHHHHHHHHHTSC---------GGGEEEEETTEECCTTSCHHHHTCCSSC
T ss_pred CCeEEEEEE-cCCcE-EEEEEecCChHHHHHHHHHhhcCCC---------hhhEEEEECCcCCCCCCCHhHcCCCCCC
Confidence 466888888 45544 368999999999999988887 44 9999999999999999999999999995
No 115
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=97.08 E-value=0.0022 Score=45.10 Aligned_cols=68 Identities=24% Similarity=0.409 Sum_probs=52.6
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEe--cCeecC-CCCccccCCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLIS--SGKILE-NNKTVGQCKIPYG 78 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~--~Gr~L~-D~~tL~~~~i~~g 78 (125)
+...+|+||+.+|+.+ .-.|..++||.+|++.|....| + . ......|+. -.|.|+ ++.||+++|+...
T Consensus 50 ~~~t~IqIRlpdG~rl-~~rF~~~~tl~~v~~fV~~~~~-~--~---~~~~f~L~t~fPrk~l~d~~~TL~eagL~ps 120 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRL-VQKFNHSHRISDIRLFIVDARP-A--M---AATSFVLMTTFPNKELADENQTLKEANLLNA 120 (127)
T ss_dssp SCCCCEEEEETTTTEE-EEECCSSCBHHHHHHHHHHHCS-G--G---GTSCEEEEETTTTEECCSTTCBHHHHTCSSC
T ss_pred CCcEEEEEECCCCCEE-EEEeCCCCCHHHHHHHHHHhCc-C--C---CCCCeEEecCCCCCCCCCCCCcHHHCCCcCc
Confidence 3568999999999765 5799999999999999999744 1 0 135566764 467785 4799999999865
No 116
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=95.98 E-value=0.0069 Score=43.11 Aligned_cols=71 Identities=18% Similarity=0.214 Sum_probs=51.1
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCc-----c---------------------CCCCC--ceeEE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKT-----I---------------------VPKAV--TEIKL 57 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~-----~---------------------~P~~~--~~qrL 57 (125)
-|++++.+| .+..+.|+.+.+|.+++..|..+ ++...| . .|... ..+||
T Consensus 13 ~LkV~llDg-~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL 91 (128)
T 2kc2_A 13 PLKIRMLDG-TVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKL 91 (128)
T ss_dssp EEEEECTTS-CEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSC
T ss_pred cEEEEcCCC-CEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHh
Confidence 488999999 55689999999999999999998 431111 0 01111 24565
Q ss_pred Ee--cCeecCCCCccccCCCCCCC
Q 033172 58 IS--SGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 58 I~--~Gr~L~D~~tL~~~~i~~gd 79 (125)
-. .+..|+++.||.+.||.+++
T Consensus 92 ~~dd~~~WLD~srtL~EQGI~e~~ 115 (128)
T 2kc2_A 92 HTDDELNWLDHGRTLREQGVEEHE 115 (128)
T ss_dssp CCSSSEEEECSSSCHHHHTCCTTS
T ss_pred cccCCCCcccCCCcHHHcCCCCCC
Confidence 22 24799999999999999983
No 117
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=95.34 E-value=0.12 Score=35.91 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=49.8
Q ss_pred CeEEEEEEeCCC-CeeeeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCceeEEEe----cCeecCCCC---------
Q 033172 5 ELIDIKFRLYDG-SDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS----SGKILENNK--------- 68 (125)
Q Consensus 5 ~~v~l~~~~~~g-~~~~~~~v~~~~TV~~lK~~I~~~~p~~~--~~~P~~~~~qrLI~----~Gr~L~D~~--------- 68 (125)
..+.|......+ ....++.+=.-+||.++|++|...+=++. ...| .++++.|=+ +|++|.|.+
T Consensus 10 ~~ltl~v~~~~~~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP-~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~w 88 (111)
T 4e71_A 10 APLTVSVIVQDEGVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWP-RPDSVVLEWRPGSTAQILSDLDLTSQREGRW 88 (111)
T ss_dssp CEEEEEEEETTSCCCCEEEEEETTCBHHHHHHHHHHHHTC----------CCSEEEEEC--CCCEECCSSCTTSCC---C
T ss_pred EEEEEEEEecCCCCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCC-CCCceeeEEecCCCCccccccCccceecCcc
Confidence 345566555432 22346677788899999999999832221 1222 467788866 356776632
Q ss_pred ----ccccCCCCCCCcCCceEEEEEEEc
Q 033172 69 ----TVGQCKIPYGEVPGGVIIMHVVVQ 92 (125)
Q Consensus 69 ----tL~~~~i~~gd~~~~~~tmhlv~~ 92 (125)
||+.|++++| ++|-++.+
T Consensus 89 krLNTL~HY~V~dg------atl~l~~~ 110 (111)
T 4e71_A 89 KRVNTLMHYNVRDG------ATLILSKV 110 (111)
T ss_dssp CCCCBHHHHTCCTT------CEEEEEEC
T ss_pred eEecchhhcCCCCC------CEEEEEeC
Confidence 6777999988 67776543
No 118
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=94.78 E-value=0.17 Score=36.33 Aligned_cols=83 Identities=19% Similarity=0.265 Sum_probs=52.2
Q ss_pred CeEEEEEEeCCC-----CeeeeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCceeEEEe----cCe-ecCCC--C--
Q 033172 5 ELIDIKFRLYDG-----SDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS----SGK-ILENN--K-- 68 (125)
Q Consensus 5 ~~v~l~~~~~~g-----~~~~~~~v~~~~TV~~lK~~I~~~~p~~~--~~~P~~~~~qrLI~----~Gr-~L~D~--~-- 68 (125)
..+.|.+....+ ..-.++.|=.-+||.++|+||.+.+=++. ... +.++++-|=+ +|+ +|.|. .
T Consensus 23 ~~ltl~v~~~~~~~~~~~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqR-P~~~d~dLEwr~g~~g~liL~D~D~tS~ 101 (138)
T 2r2o_A 23 RPLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQR-PDPRTLDVEWRSGVAGHLILSDEDVTSE 101 (138)
T ss_dssp CEEEEEEEEC-------CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGC-CCGGGEEEEEECSSSCEEEECSSSTTCC
T ss_pred EEEEEEEEccCCcccccCCceeEEEeccccHHHHHHHHHHHHHcCCccccC-CCccceeEEEecCCcCceEeeccCCccc
Confidence 445566555432 12346778788899999999999822231 122 2467777755 344 47553 2
Q ss_pred ---------ccccCCCCCCCcCCceEEEEEEEccC
Q 033172 69 ---------TVGQCKIPYGEVPGGVIIMHVVVQPS 94 (125)
Q Consensus 69 ---------tL~~~~i~~gd~~~~~~tmhlv~~~~ 94 (125)
||+.|++++| .+|-++.+..
T Consensus 102 ~~~~wkrLNTL~HY~V~Dg------a~l~l~~~~~ 130 (138)
T 2r2o_A 102 VQGLWRRLNTLQHYKVPDG------ATVALVPCLT 130 (138)
T ss_dssp EETTEEECCBHHHHTCCTT------CEEEEEEC--
T ss_pred ccCCceeecchhccCCCCC------CEEEEEECCC
Confidence 8889999999 6787776643
No 119
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=94.11 E-value=0.47 Score=33.63 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=45.9
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCceeEEEe-cC---e-ecCCC-------------CccccCCCCCCC
Q 033172 20 GPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS-SG---K-ILENN-------------KTVGQCKIPYGE 79 (125)
Q Consensus 20 ~~~~v~~~~TV~~lK~~I~~~~p~~~--~~~P~~~~~qrLI~-~G---r-~L~D~-------------~tL~~~~i~~gd 79 (125)
.++.+=.-+||.++|++|...+=++. ...| .++++.|=+ .| + +|.|. -||+.|++++|
T Consensus 19 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~dg- 96 (127)
T 3h6n_A 19 LSVRAMDTDTLTQVKEKILEAFCKNVPYSQWP-RAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIPEG- 96 (127)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHSTTSCGGGSC-CGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCCTT-
T ss_pred eeeeeeccCchhhhhHHHHHHHhccCCcccCC-CCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCCCC-
Confidence 35677778899999999999832221 1222 578888876 34 3 47652 26777999998
Q ss_pred cCCceEEEEEEEcc
Q 033172 80 VPGGVIIMHVVVQP 93 (125)
Q Consensus 80 ~~~~~~tmhlv~~~ 93 (125)
++|-++.+.
T Consensus 97 -----atv~l~~~~ 105 (127)
T 3h6n_A 97 -----ASLAMSLID 105 (127)
T ss_dssp -----CEEEEEECC
T ss_pred -----CEEEEEEcc
Confidence 678777553
No 120
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=91.61 E-value=0.78 Score=31.97 Aligned_cols=81 Identities=20% Similarity=0.324 Sum_probs=49.6
Q ss_pred eEEEEEEeCCC--CeeeeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCceeEEEe-cCe----ecCCC---------
Q 033172 6 LIDIKFRLYDG--SDIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS-SGK----ILENN--------- 67 (125)
Q Consensus 6 ~v~l~~~~~~g--~~~~~~~v~~~~TV~~lK~~I~~~~p~~~--~~~P~~~~~qrLI~-~Gr----~L~D~--------- 67 (125)
.+.|......+ ....++.+=.-+||.++|++|...+=++. ...| .++++.|=+ .|+ +|.|.
T Consensus 13 ~ltl~v~~~~~~~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP-~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~ 91 (117)
T 4e74_A 13 TLVLSCVSPDNANSPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRP-KAADMDLEWRQGSGARMILQDEDITTKIEND 91 (117)
T ss_dssp EEEEEECCC----CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSC-CGGGEEEEEECTTSCEEEECSSSTTCCC---
T ss_pred EEEEEEEccCCCCCCceEeeeecCCchHHHHHHHHHHHhcCCCcccCC-CCCceeEEEecCCCCceEeecCCCccEecCc
Confidence 34555444333 22235677678899999999999832231 1222 477888865 443 46552
Q ss_pred ----CccccCCCCCCCcCCceEEEEEEEcc
Q 033172 68 ----KTVGQCKIPYGEVPGGVIIMHVVVQP 93 (125)
Q Consensus 68 ----~tL~~~~i~~gd~~~~~~tmhlv~~~ 93 (125)
-||+.|++++| ++|-++.+.
T Consensus 92 wkrLNTL~HY~V~dg------atl~l~~~~ 115 (117)
T 4e74_A 92 WKRLNTLAHYQVPDG------SVVALVSKQ 115 (117)
T ss_dssp CCCCCBHHHHTCCTT------CEEEEEECC
T ss_pred ceEeccccccCCCCC------CEEEEEeCC
Confidence 25677899988 678776654
No 121
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=90.52 E-value=1.6 Score=32.72 Aligned_cols=52 Identities=25% Similarity=0.370 Sum_probs=38.8
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-eeEE--Ee-cCe--ecCC-CCccccCCCCCC
Q 033172 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKL--IS-SGK--ILEN-NKTVGQCKIPYG 78 (125)
Q Consensus 20 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~-~qrL--I~-~Gr--~L~D-~~tL~~~~i~~g 78 (125)
....++..+||.+|++.+...+- +| .+ ..|| +| .++ .|+| +.||++++|.++
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~-----i~--~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~ 200 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFS-----IP--DEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQG 200 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTT-----CC--TTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTT
T ss_pred eEEEEcccchHHHHHHHHHHHhC-----CC--CCCceEEEEecCCCCeeecCCCCCCHHHhCCCCC
Confidence 45788999999999999999932 11 43 6888 34 222 6665 679999999988
No 122
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=89.91 E-value=2.9 Score=27.48 Aligned_cols=58 Identities=9% Similarity=0.146 Sum_probs=43.9
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecC--eecCCCCccccCCCCCCC
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSG--KILENNKTVGQCKIPYGE 79 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~G--r~L~D~~tL~~~~i~~gd 79 (125)
.+.++.++|+.++-++++..- -+.-..|.+..-+|..++| +.|..+.|+++.||..-+
T Consensus 16 LV~VDt~dTmdqVA~kvA~Hs-VGrRV~p~p~~~~rVr~~G~~~~~pr~~tvae~gl~P~e 75 (83)
T 2inc_C 16 LVPVDTEDTMDQVAEKCAYHS-INRRVHPQPEKILRVRRHEDGTLFPRGMIVSDAGLRPTE 75 (83)
T ss_dssp EEEECTTCBHHHHHHHHHTTT-BTTTBCCCTTSEEEEEETTTCCEECTTCBGGGSCCCTTC
T ss_pred EEEecCCCcHHHHHHHHhhhh-cceecCCCCCCeEEEEecCCccCCCCCCEeeccCCCCce
Confidence 478899999999999999871 0111112234468999999 999999999999998653
No 123
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=88.34 E-value=3.4 Score=27.23 Aligned_cols=71 Identities=6% Similarity=0.064 Sum_probs=49.9
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCee--cCCCCccccCCCCCCC
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKI--LENNKTVGQCKIPYGE 79 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~--L~D~~tL~~~~i~~gd 79 (125)
+-|.-++...--...+.++.++|+.++-++++..- -+. ..++.+.-+|.-++|+. |.++-|+++.||..-+
T Consensus 4 ~Pl~~~F~gDFv~~Lv~VDt~dtmdqVA~k~A~h~-VGr-rv~p~pg~lrVr~~G~~~~~Pr~mtVaeaGl~Pme 76 (84)
T 3ge3_C 4 FPVHAAFEKDFLVQLVVVDLNDSMDQVAEKVAYHC-VNR-RVAPREGVMRVRKHRSTELFPRDMTIAESGLNPTE 76 (84)
T ss_dssp EEEEEEETTCSBEEEEEEETTCBHHHHHHHHHHTT-BTT-TBCCCSSCEEEEETTCSCBCCTTCBHHHHCCCTTC
T ss_pred cceEEEeccccEEEEEEecCCCcHHHHHHHHhhhh-cce-eeCCCCCcEEEEECCCcccCCCCCEeeccCCCcce
Confidence 33444444442333578999999999999999871 011 11123458999999997 9999999999998653
No 124
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=88.15 E-value=2.4 Score=37.23 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=50.9
Q ss_pred eEEEEEEeCCCC-----eeeeEEeCCcchHHHHHHHHHhhCCCC--CccCCCCCceeEEEe-c---Ce-ecCCCC-----
Q 033172 6 LIDIKFRLYDGS-----DIGPFRYSSASTVDMLKQRIVSDWPKG--KTIVPKAVTEIKLIS-S---GK-ILENNK----- 68 (125)
Q Consensus 6 ~v~l~~~~~~g~-----~~~~~~v~~~~TV~~lK~~I~~~~p~~--~~~~P~~~~~qrLI~-~---Gr-~L~D~~----- 68 (125)
.+.|.+....|. ...++.+-.-+||.++|++|...+=++ +... +.++++.|=+ . |+ +|.|.+
T Consensus 257 ~ltL~v~~~~~~~~~~~~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~r-P~~~~~dLEwr~g~~g~~iL~D~D~ts~~ 335 (644)
T 3hm6_X 257 PLTLNALLAVGPGAGEAQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQR-PDPRTLDVEWRSGVAGHLILSDEDVTSEV 335 (644)
T ss_dssp EEEEEEECC-------CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGS-CCGGGEEEEEECSSSCEEEECSSSTTCCE
T ss_pred eEEEEEeecCccccCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccC-CCCCCcceEEeeCCCCceeecccCcccee
Confidence 445555544332 223577778889999999999872222 1122 2467788865 2 44 576644
Q ss_pred --------ccccCCCCCCCcCCceEEEEEEEcc
Q 033172 69 --------TVGQCKIPYGEVPGGVIIMHVVVQP 93 (125)
Q Consensus 69 --------tL~~~~i~~gd~~~~~~tmhlv~~~ 93 (125)
||+.|++++| ++|-++.+.
T Consensus 336 ~~~wkrLNTL~HY~V~dg------a~v~L~p~~ 362 (644)
T 3hm6_X 336 QGLWRRLNTLQHYKVPDG------ATVALVPCL 362 (644)
T ss_dssp ETTEEECCBTTTTTCCTT------CEEEEEEC-
T ss_pred cCcceeecchhhcCCCCC------cEEEEEecc
Confidence 7888999999 677776654
No 125
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=88.06 E-value=2.3 Score=28.30 Aligned_cols=71 Identities=8% Similarity=0.106 Sum_probs=55.2
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceE
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVI 85 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~ 85 (125)
+|.++..+|... .+.+.|++++.+|=+..-++ +. +++-.|-|++|.|+=+..+.=.||+.| .
T Consensus 11 ~v~Vl~~n~rr~-~VKvtp~t~L~~VL~eaC~K~gl~---------~~~~~Lkh~~k~lDLSlpfRlsgLpnn------A 74 (90)
T 2al3_A 11 AVSVLAPNGRRH-TVKVTPSTVLLQVLEDTCRRQDFN---------PSEYDLKFQRTVLDLSLQWRFANLPNN------A 74 (90)
T ss_dssp CEEEECTTSCEE-EECCCTTSBHHHHHHHHHHHTTCC---------GGGCEEEETTEEESSSCBHHHHCCCSS------C
T ss_pred EEEEEcCCCcEE-EEEECCCCCHHHHHHHHHHHhCCC---------hhhCeEEeCCEeccccceeEecCCCCC------C
Confidence 667777888554 67999999999964444444 43 778899999999998999999999988 6
Q ss_pred EEEEEEccC
Q 033172 86 IMHVVVQPS 94 (125)
Q Consensus 86 tmhlv~~~~ 94 (125)
.+-|+....
T Consensus 75 kLELv~~s~ 83 (90)
T 2al3_A 75 KLEMVPVSR 83 (90)
T ss_dssp EEEEECSSS
T ss_pred EEEEEEccC
Confidence 777765543
No 126
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=87.94 E-value=6.8 Score=29.45 Aligned_cols=51 Identities=18% Similarity=0.333 Sum_probs=38.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCc-eeEEEe-c----CeecCC-CCccccCCCCCC
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVT-EIKLIS-S----GKILEN-NKTVGQCKIPYG 78 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~-~qrLI~-~----Gr~L~D-~~tL~~~~i~~g 78 (125)
...++..+||.+|++.+...+- +| .+ ..||-. . ...|+| +.||.++++..+
T Consensus 155 ~~~~Sk~~ti~~l~~~~~~~~~-----i~--~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~ 212 (231)
T 3jyu_A 155 SCHFSKADTIATIEKEMRKLFN-----IP--AERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQG 212 (231)
T ss_dssp EEEECTTCBHHHHHHHHHHHTT-----CC--TTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTT
T ss_pred EEEecccCcHHHHHHHHHHHhC-----CC--CCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCC
Confidence 4677999999999999999832 11 44 688843 2 236665 699999999988
No 127
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=87.11 E-value=0.97 Score=31.06 Aligned_cols=71 Identities=11% Similarity=0.208 Sum_probs=46.9
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCceeEEEe---cCee--c-CCCCccccCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLIS---SGKI--L-ENNKTVGQCKI 75 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~---~p~~~~~~P~~~~~qrLI~---~Gr~--L-~D~~tL~~~~i 75 (125)
+.+.|.+.+.+|. +..++++.+.|+.++|+.++++ .|=.... .++++=.+.+ .|.+ | ++++-|-+.+.
T Consensus 18 ~~v~v~~LlPnGi-~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L--~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~p 94 (108)
T 2v1y_A 18 PRILVECLLPNGM-IVTLECLREATLITIKHELFKEARKYPLHQLL--QDESSYIFVSVTQEAEREEFFDETRRLCDLRL 94 (108)
T ss_dssp SEEEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHHGGGSTTGGGC--CCGGGCEEEEEBTTSCEEEECCTTSBGGGSCB
T ss_pred CcEEEEEEcCcEE-EEEEEeeccccHHHHHHHHHHHHHhCchHHHh--CCccceEEEEecCCceEEEeEcCceEEEeccc
Confidence 6799999999994 4578999999999999999998 2211110 1123323322 2343 6 44578877776
Q ss_pred CCC
Q 033172 76 PYG 78 (125)
Q Consensus 76 ~~g 78 (125)
-.+
T Consensus 95 f~p 97 (108)
T 2v1y_A 95 FQP 97 (108)
T ss_dssp SSS
T ss_pred cce
Confidence 644
No 128
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=84.72 E-value=5.4 Score=34.90 Aligned_cols=82 Identities=11% Similarity=0.231 Sum_probs=51.4
Q ss_pred eEEEEEEeCCCC--eeeeEEeCCcchHHHHHHHHHhhCCCCC--ccCCCCCceeEEEe-c---Ce-ecCCC---------
Q 033172 6 LIDIKFRLYDGS--DIGPFRYSSASTVDMLKQRIVSDWPKGK--TIVPKAVTEIKLIS-S---GK-ILENN--------- 67 (125)
Q Consensus 6 ~v~l~~~~~~g~--~~~~~~v~~~~TV~~lK~~I~~~~p~~~--~~~P~~~~~qrLI~-~---Gr-~L~D~--------- 67 (125)
.+.|.....+|. ...++.+=.-+||.++|++|-..+=++. ... +.++++.|=+ . |+ +|.|.
T Consensus 233 ~ltL~v~~~~~~~~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~r-P~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~ 311 (627)
T 3ig3_A 233 TLTLHCVCPESEGSAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQR-PKAEDMDLEWRQGRMARIILQDEDITTKIECD 311 (627)
T ss_dssp EEEEEEECTTTC--CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGS-CCGGGEEEEEESCSSCEEEECSSSTTCCEETT
T ss_pred eEEEEEeccCCCCCCceeeEeeccCcHHHHHHHHHHHHHcCCCcccC-CCCCccceeEeeCCCCceeeccCCccccccCc
Confidence 445555444432 2336777788899999999998822221 122 2577888855 3 44 56542
Q ss_pred ----CccccCCCCCCCcCCceEEEEEEEccC
Q 033172 68 ----KTVGQCKIPYGEVPGGVIIMHVVVQPS 94 (125)
Q Consensus 68 ----~tL~~~~i~~gd~~~~~~tmhlv~~~~ 94 (125)
-||+.|++++| .+|-++.+..
T Consensus 312 wkrLNTL~HY~V~Dg------a~v~L~p~~~ 336 (627)
T 3ig3_A 312 WKRVNSLAHYQVTDG------SLVALVPKQV 336 (627)
T ss_dssp EEECCBTTTTTCCTT------CEEEEEEC--
T ss_pred eeEecchhhcCCCCC------ceEEEEeccc
Confidence 26788999999 6777776653
No 129
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=84.00 E-value=7.1 Score=26.47 Aligned_cols=67 Identities=7% Similarity=0.005 Sum_probs=39.1
Q ss_pred eEEeCC---cchHHHHHHHHHhhCCCCCccC--C--CCCceeEEEecCe---ecCCCCccccCCCCCCCcCCceEEEEEE
Q 033172 21 PFRYSS---ASTVDMLKQRIVSDWPKGKTIV--P--KAVTEIKLISSGK---ILENNKTVGQCKIPYGEVPGGVIIMHVV 90 (125)
Q Consensus 21 ~~~v~~---~~TV~~lK~~I~~~~p~~~~~~--P--~~~~~qrLI~~Gr---~L~D~~tL~~~~i~~gd~~~~~~tmhlv 90 (125)
.++++. ..||.+|-+.|.+++|+..... . .--..+.++-+|+ +|+.- ++.+++| ..|.++
T Consensus 33 ~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~~l~gl----dt~L~dG------DeV~ii 102 (114)
T 1wgk_A 33 QVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGEL----DYQLQDQ------DSILFI 102 (114)
T ss_dssp EEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHHHHCTT----TCBCCSS------EEEEEE
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeeeccCCc----CcCCCCC------CEEEEe
Confidence 467773 3699999999999988553211 0 0022345555664 22221 3667888 456666
Q ss_pred EccCCcc
Q 033172 91 VQPSLAK 97 (125)
Q Consensus 91 ~~~~~~~ 97 (125)
....++.
T Consensus 103 p~vaGG~ 109 (114)
T 1wgk_A 103 STLHGGS 109 (114)
T ss_dssp ECSCCCC
T ss_pred CCCCCCC
Confidence 6555553
No 130
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=83.96 E-value=6.4 Score=27.69 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=44.3
Q ss_pred EEEEEEe---CCC-----CeeeeEEeCCcchHHHHHHHHHhhCC--CCCccCCCCCceeEEEe-cC---eecCCC-----
Q 033172 7 IDIKFRL---YDG-----SDIGPFRYSSASTVDMLKQRIVSDWP--KGKTIVPKAVTEIKLIS-SG---KILENN----- 67 (125)
Q Consensus 7 v~l~~~~---~~g-----~~~~~~~v~~~~TV~~lK~~I~~~~p--~~~~~~P~~~~~qrLI~-~G---r~L~D~----- 67 (125)
+.|...+ ..+ ..-.++.+=.-+||.++|++|...+= ++..-.+ .++++.|=+ .| ++|.|.
T Consensus 20 LtL~vv~~~~~~~~~~~~~~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~-r~~d~dLEwr~g~~~~~L~D~D~tS~ 98 (126)
T 3kuz_A 20 VALNVVFEKIPENESADVCRNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGL-QLNEIGLELQMGTRQKELLDIDSSSV 98 (126)
T ss_dssp EEEEEEECCCTTSSCSCSCCEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSS-CGGGEEEEEEETTEEEEECSSCTTCC
T ss_pred EEEEEEeeccCCCcCcCcCCceEeeeecCCcHHHHHHHHHHHHhccCCCcCCC-CccccceEEecCCCcceeeccCCcce
Confidence 3666665 332 12236677788899999999988721 0111111 256777755 33 355431
Q ss_pred ---------CccccCCCCCCCcCCceEEEEEE
Q 033172 68 ---------KTVGQCKIPYGEVPGGVIIMHVV 90 (125)
Q Consensus 68 ---------~tL~~~~i~~gd~~~~~~tmhlv 90 (125)
-||+.|++++| .+|-++
T Consensus 99 ~~e~~wkrLNTL~HY~V~Dg------atlal~ 124 (126)
T 3kuz_A 99 ILEDGITKLNTIGHYEISNG------STIKVF 124 (126)
T ss_dssp BCTTSCBCCCBTGGGTCCTT------CEEEEE
T ss_pred EecCCeeEeccccccCCCCC------CEEEEe
Confidence 14556888888 566554
No 131
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=83.54 E-value=5.1 Score=25.20 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=35.3
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCcc-CCCC----CceeEEEecCeecCCCCccccCCCCCCC
Q 033172 20 GPFRYSSASTVDMLKQRIVSDWPKGKTI-VPKA----VTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 20 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~-~P~~----~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
..+++++..||.+|.+.+..++| +... .-.. .+..++.-+|+....+ ..+++||
T Consensus 20 ~~~~~~~~~Tv~~ll~~L~~~~p-~~~~~~l~~~g~l~~~~~v~VN~~~v~~~-----~~l~~gD 78 (89)
T 3po0_A 20 VRVDVDGDATVGDALDALVGAHP-ALESRVFGDDGELYDHINVLRNGEAAALG-----EATAAGD 78 (89)
T ss_dssp EEEECCTTCBHHHHHHHHHHHCG-GGHHHHBCTTSCBCTTSEEEETTEECCTT-----SBCCTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHCc-HHHHHHhccCCcccccEEEEECCEECCCC-----cccCCCC
Confidence 35788788999999999999876 1110 0000 1236788889887653 4466774
No 132
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=81.24 E-value=5 Score=25.98 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=41.8
Q ss_pred EEEEEEeC------CCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccC--C--CCCceeEEEecCeecCCCCccccCCCC
Q 033172 7 IDIKFRLY------DGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIV--P--KAVTEIKLISSGKILENNKTVGQCKIP 76 (125)
Q Consensus 7 v~l~~~~~------~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~--P--~~~~~qrLI~~Gr~L~D~~tL~~~~i~ 76 (125)
..|++++. .|..-..+++++..||.+|.+.+..++|.-.... + .-...+.+.-+|+.... +..++
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~-----~~~L~ 84 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW-----DEELK 84 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT-----TCBCC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC-----CCCCC
Confidence 45566653 2322235778888999999999998865111110 0 00255778889988764 45567
Q ss_pred CCC
Q 033172 77 YGE 79 (125)
Q Consensus 77 ~gd 79 (125)
+||
T Consensus 85 dGD 87 (98)
T 1vjk_A 85 DGD 87 (98)
T ss_dssp TTC
T ss_pred CCC
Confidence 774
No 133
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=80.36 E-value=13 Score=34.42 Aligned_cols=79 Identities=13% Similarity=0.215 Sum_probs=56.9
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCceeEEEecCe-----ec-CCCCccccCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISSGK-----IL-ENNKTVGQCK 74 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~---~p~~~~~~P~~~~~qrLI~~Gr-----~L-~D~~tL~~~~ 74 (125)
++.|.|.|.+.+|. +..++++.+.|+.++|+.|+++ .|-. ..-.++++-.+.+-.+ .+ ++.+.|.+.+
T Consensus 49 ~~~v~vd~LLPnGi-~i~~~v~~~~Tl~~iK~~lw~~A~~~pl~--~~l~~~~~Y~f~~i~~~~e~ee~~de~~~l~~~~ 125 (1092)
T 2y3a_A 49 DGAISVDFLLPTGI-YIQLEVPREATISYIKQMLWKQVHNYPMF--NLLMDIDSYMFACVNQTAVYEELEDETRRLCDVR 125 (1092)
T ss_dssp CSEEEEEEECTTCC-EEEEEEETTCBHHHHHHHHHHHGGGSTTT--TSCCCGGGEEEEEEBSSSCEEECCCTTSBSGGGC
T ss_pred CCceEEEEECCCce-EEEEEecCcccHHHHHHHHHHHHHhCCch--hccCCcceeEEEEecCCceEEEeecCceeeEeec
Confidence 47899999999995 4589999999999999999999 3311 1223567777777332 34 5568888876
Q ss_pred CCCCCcCCceEEEEEEEc
Q 033172 75 IPYGEVPGGVIIMHVVVQ 92 (125)
Q Consensus 75 i~~gd~~~~~~tmhlv~~ 92 (125)
.-.+ .+.++-+
T Consensus 126 ~~~p-------~l~lve~ 136 (1092)
T 2y3a_A 126 PFLP-------VLKLVTR 136 (1092)
T ss_dssp BSSS-------CEEEEES
T ss_pred ccce-------EEEEEec
Confidence 5433 5777766
No 134
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=78.54 E-value=2.8 Score=25.63 Aligned_cols=46 Identities=11% Similarity=0.211 Sum_probs=33.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCcee--EEEecCeecCCCCccccCCCCCCC
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEI--KLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~q--rLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+++++..||.+|.+.+..++| + ...+ .+..+|+....+ ..+++||
T Consensus 19 ~~~~~~~~tv~~ll~~l~~~~p-~-------~~~v~~~v~vNg~~v~~~-----~~L~~gD 66 (77)
T 2q5w_D 19 DIVLEQALTVQQFEDLLFERYP-Q-------INNKKFQVAVNEEFVQKS-----DFIQPND 66 (77)
T ss_dssp ECCCSSCEEHHHHHHHHHHHCG-G-------GTTCCCEEEETTEEECTT-----SEECTTC
T ss_pred EEECCCCCCHHHHHHHHHHHCc-c-------hhcceEEEEECCEECCCC-----CCcCCCC
Confidence 4667788999999999988876 1 1234 788899988654 4456774
No 135
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=76.79 E-value=5.8 Score=26.11 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=26.7
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCC
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWP 42 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p 42 (125)
+|+++.-.-++..+.++++-+..+||.+|..+..
T Consensus 13 ~KVK~yy~DDIiAIrvP~di~~~~L~dKi~~RLk 46 (85)
T 1ip9_A 13 TKIKFYYKDDIFALMLKGDTTYKELRSKIAPRID 46 (85)
T ss_dssp EEEEECBTTCCEEEEECSCCCHHHHHHHHHHHHT
T ss_pred eEEEEEecCcEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444432227889999999999999999999965
No 136
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=76.68 E-value=9.1 Score=25.14 Aligned_cols=32 Identities=9% Similarity=0.256 Sum_probs=24.3
Q ss_pred EEEEeCCCCeeeeEEeC-CcchHHHHHHHHHhh
Q 033172 9 IKFRLYDGSDIGPFRYS-SASTVDMLKQRIVSD 40 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~-~~~TV~~lK~~I~~~ 40 (125)
|.+|+.+..+...+.|+ ..-+|.+||+.|.++
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~ 41 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGR 41 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHH
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHH
Confidence 44555666666677775 568999999999988
No 137
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=74.98 E-value=8.1 Score=25.13 Aligned_cols=47 Identities=6% Similarity=0.020 Sum_probs=34.6
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr 62 (125)
.+.|++... ++..+.++++.+..+|+++|.++.+ .++++++|-|.-+
T Consensus 5 ~~~VKV~~~---~tvairvp~~~~y~~L~~~l~~kL~-------l~~~~~~LsYk~~ 51 (83)
T 1oey_A 5 AYTLKVHYK---YTVVMKTQPGLPYSQVRDMVSKKLE-------LRLEHTKLSYRPR 51 (83)
T ss_dssp CEEEEEESS---SEEEEEECTTCCHHHHHHHHHHHTT-------CCGGGCCEEECCT
T ss_pred cEEEEEEEE---EEEEEECCCCCCHHHHHHHHHHHhC-------CCcceeEEEeeCC
Confidence 344444444 4567899999999999999999954 2267888877653
No 138
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=74.27 E-value=7.5 Score=26.11 Aligned_cols=62 Identities=15% Similarity=0.113 Sum_probs=44.1
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--C--CCCCc---cCCCCCceeEEEecCeecCCCCccccCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--W--PKGKT---IVPKAVTEIKLISSGKILENNKTVGQCK 74 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~--p~~~~---~~P~~~~~qrLI~~Gr~L~D~~tL~~~~ 74 (125)
.++.|||-..||+. ..+.|++++|+.+|-+.+.++ . +.+|. ..| =++.-|.|+|-+-|-+.-
T Consensus 8 ~k~vvkvf~~Dgss-ksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P-------~L~~ER~~EDHE~vvevl 76 (100)
T 1wgr_A 8 RPHVVKVYSEDGAC-RSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHP-------HLALERGLEDHESVVEVQ 76 (100)
T ss_dssp SCEEEEEEETTSCE-EEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEET-------TTTEEEEECSSSCHHHHH
T ss_pred CCEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecC-------CCCcEEeccCchhHHHHH
Confidence 56889999999955 579999999999999999999 1 11232 222 112346788877766543
No 139
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=72.32 E-value=5.4 Score=24.98 Aligned_cols=49 Identities=10% Similarity=0.257 Sum_probs=32.8
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCC
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNK 68 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~ 68 (125)
.|++++. |......++++..||++|=+.+. +| ++..-+.-+|+++.-+.
T Consensus 2 ~v~Vkl~-g~~~~~~ev~~g~Tv~dLL~~Lg--l~---------~~~VvV~vNG~~v~~d~ 50 (74)
T 2l32_A 2 NVTVEVV-GEETSEVAVDDDGTYADLVRAVD--LS---------PHEVTVLVDGRPVPEDQ 50 (74)
T ss_dssp EEEEECS-SSSEEEEECSTTCSHHHHHHTTC--CC---------SSCCCEECCCCCCCTTS
T ss_pred EEEEEEe-CccceeEEcCCCCcHHHHHHHcC--CC---------cceEEEEECCEECCHHH
Confidence 4566666 43445689999999998754322 44 55556778998886554
No 140
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=67.70 E-value=18 Score=21.92 Aligned_cols=43 Identities=12% Similarity=0.266 Sum_probs=32.2
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.++++...||.+|.+.+.- + .....+..+|+++..+. .+++||
T Consensus 17 ~~~~~~~~tv~~Ll~~l~~--~---------~~~v~vavN~~~v~~~~-----~L~~gD 59 (70)
T 1ryj_A 17 ILESGAPRRIKDVLGELEI--P---------IETVVVKKNGQIVIDEE-----EIFDGD 59 (70)
T ss_dssp EEEESSCCBHHHHHHHTTC--C---------TTTEEEEETTEECCTTS-----BCCTTC
T ss_pred eEECCCCCcHHHHHHHhCC--C---------CCCEEEEECCEECCCcc-----cCCCCC
Confidence 4688888999999988743 2 56667889999997665 456774
No 141
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.87 E-value=19 Score=23.89 Aligned_cols=66 Identities=15% Similarity=0.139 Sum_probs=49.4
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEE---ecCeecCCCCccccCCCCC
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLI---SSGKILENNKTVGQCKIPY 77 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI---~~Gr~L~D~~tL~~~~i~~ 77 (125)
|.+++|-+......++ .+.|+|..+..+|--.|=++.. -+++..-|. -++..|+=+++|.+|||.+
T Consensus 8 E~TvRLvVNy~~tQKt-VvRVSP~vpL~ellp~IC~Kce-------fdp~~~~Ll~d~~~~e~LdLskSLndlgirE 76 (91)
T 2daj_A 8 EKTVRVVINFKKTQKT-IVRVSPHASLQELAPIICSKCE-------FDPLHTLLLKDYQSQEPLDLTKSLNDLGLRE 76 (91)
T ss_dssp CSCEEEEEEETTTEEE-EEEECSSSCTTTHHHHHHHHTT-------CCTTSEEEESCSSCCCBCCTTSCHHHHTCSE
T ss_pred ccEEEEEEeecCccee-EEEeCCCCcHHHHHHHHhhccc-------CChhhEEEecCCCCCcccchhcchhhhhhhh
Confidence 6788888888755354 5899999999999999988832 113444443 4566888899999999985
No 142
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=62.84 E-value=30 Score=22.82 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=46.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCCcCCceEEEEEEEccCCc
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGEVPGGVIIMHVVVQPSLA 96 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd~~~~~~tmhlv~~~~~~ 96 (125)
...++=...+..||+.++.+.- .+-+.=.+...+..|+++++|-+-+++-. +.+.+.+-++...+
T Consensus 6 ~qhmDI~epL~~Lk~LLe~Rl~-------i~L~~y~f~LQd~~L~~~k~LvdQcVqge----GlVQinvqik~~~~ 70 (89)
T 2juo_A 6 SQAIDINEPIGNLKKLLEPRLQ-------CSLDAHEICLQDIQLDPDRSLFDQGVKTD----GTVQLSVQVISYQG 70 (89)
T ss_dssp EEEEESSSBGGGHHHHSHHHHC-------SCCSSCEEEETTEECCTTSBTTTSSCCCC----SEEEEEEEEECCTT
T ss_pred hhhccccCcHHHHHHHHHHHhc-------CCcccCeEEeeccccCCCccHHHhhcccc----cEEEEEEEEEecCC
Confidence 4567778889999999999933 12555666678888999999999888744 34566665555444
No 143
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=62.71 E-value=23 Score=21.45 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=32.0
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+++ +..||.+|.+.+..+ | +.... .....+.-+|+...+. +..+++||
T Consensus 15 ~~e~-~~~tv~~ll~~L~~~-~-~l~~~---l~~~~vavN~~~v~~~----~~~l~~gD 63 (74)
T 3rpf_C 15 NFFI-KANDLKELRAILQEK-E-GLKEW---LGVCAIALNDHLIDNL----NTPLKDGD 63 (74)
T ss_dssp CEEE-ECSSHHHHHHHHHTC-T-TTTTT---TTTCEEEESSSEECCT----TCCCCTTC
T ss_pred EEee-CCCcHHHHHHHHHHC-c-CHHHH---hhccEEEECCEEcCCC----CcCCCCCC
Confidence 4667 678999999999876 3 11111 2567777888875432 35577784
No 144
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=61.58 E-value=15 Score=21.82 Aligned_cols=29 Identities=17% Similarity=0.065 Sum_probs=21.7
Q ss_pred EEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 9 IKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 9 l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
+++.+.+|+ ..+++..+|+.++-+.+...
T Consensus 3 i~i~~p~g~---~~~~~~g~T~~dla~~i~~~ 31 (73)
T 2kmm_A 3 VMVFTPKGE---IKRLPQGATALDFAYSLHSD 31 (73)
T ss_dssp EEEECTTCC---EEEECTTCBHHHHHHHHCSH
T ss_pred EEEEcCCCC---EEEcCCCCcHHHHHHHHhhc
Confidence 556667883 36888999999998887544
No 145
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=56.89 E-value=4.6 Score=25.12 Aligned_cols=43 Identities=9% Similarity=0.190 Sum_probs=30.4
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+++++..||.+|.+.+. +| ...+.+..+|++...+ ..+++||
T Consensus 24 ~~~~~~~~Tv~dLl~~L~--~~---------~~~v~VavNg~~v~~~-----~~L~dGD 66 (77)
T 1rws_A 24 EIEWREGMKVRDILRAVG--FN---------TESAIAKVNGKVVLED-----DEVKDGD 66 (77)
T ss_dssp CCCCCSSCCHHHHHHTTT--CS---------SCSSCEEETTEEECSS-----SCCCSSC
T ss_pred EEECCCCCcHHHHHHHhC--CC---------CcCEEEEECCEECCCC-----CCcCCCC
Confidence 467778899999987664 33 4566788899988655 4455664
No 146
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=54.56 E-value=71 Score=24.55 Aligned_cols=48 Identities=10% Similarity=0.154 Sum_probs=35.8
Q ss_pred eeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCe-ecCC-CCccccCC
Q 033172 18 DIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK-ILEN-NKTVGQCK 74 (125)
Q Consensus 18 ~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr-~L~D-~~tL~~~~ 74 (125)
....+.+.+..|+.++++.++++ .+ ++.|.|+|.+. +.-+ ....+++.
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~t~i~---------~~~q~~l~~~~~~~~~~~~~~~~~~ 373 (396)
T 4eut_A 322 TAHKIYIHSYNTATIFHELVYKQTKII---------SSNQELIYEGRRLVLEPGRLAQHFP 373 (396)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHCCC---------STTEEEESSSSEECCCSSCBTTSSC
T ss_pred eEEEEEcCchhHHHHHHHHHHHhcCCC---------hhhhHHHhcCCCCCCCCCCccccCC
Confidence 45567889999999999999998 44 89999999994 4434 33333443
No 147
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=52.47 E-value=19 Score=21.34 Aligned_cols=51 Identities=14% Similarity=0.231 Sum_probs=34.2
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+|+ +++++...||.+|.+.+.. + ...+.+..+|+++... ...+..+++||
T Consensus 5 vNg~---~~~~~~~~tv~~ll~~l~~--~---------~~~v~vavN~~~v~~~-~~~~~~L~~gD 55 (66)
T 1f0z_A 5 FNDQ---AMQCAAGQTVHELLEQLDQ--R---------QAGAALAINQQIVPRE-QWAQHIVQDGD 55 (66)
T ss_dssp ESSC---EECCCTTCCHHHHHHHHTC--C---------CSSEEEEETTEEECHH-HHTTCCCCTTE
T ss_pred ECCE---EEEcCCCCcHHHHHHHcCC--C---------CCCEEEEECCEECCch-hcCCcCCCCCC
Confidence 4563 4578888999999988743 3 5677788899887532 11234567773
No 148
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=51.91 E-value=81 Score=24.59 Aligned_cols=74 Identities=15% Similarity=0.166 Sum_probs=47.7
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEec---------CeecCCCCccccCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISS---------GKILENNKTVGQCKIP 76 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~---------Gr~L~D~~tL~~~~i~ 76 (125)
.+.+++.+.+|.. ..+.+++.+|+.+|=+.|.++.- . .+.+..-|.+. -+.|+-++++.+-+..
T Consensus 85 ~~~~~V~l~dg~~-~~~~vd~~tt~~el~~~v~~~l~-----L-~e~~~FgL~~~~~~~~~~~~~~wL~~~k~l~~q~~~ 157 (371)
T 3ivf_A 85 QRPLKIRMLDGTV-KTIMVDDSKTVTDMLMTICARIG-----I-TNHDEYSLVRELMEEKKDDELNWLDHGRTLREQGVE 157 (371)
T ss_dssp EEEEEEECTTSCE-EEEEEETTSBHHHHHHHHHHHTT-----C-SCGGGEEEECCC----------CCCTTSBTGGGTCC
T ss_pred eeEEEEECcCCCE-EEEEECCCCCHHHHHHHHHHHcC-----C-CCccccEEEEEecccccchHHHHHhcCchhHhhCCC
Confidence 4677888999965 47899999999999999999821 0 01344555442 1356666666665443
Q ss_pred CCCcCCceEEEEEEEc
Q 033172 77 YGEVPGGVIIMHVVVQ 92 (125)
Q Consensus 77 ~gd~~~~~~tmhlv~~ 92 (125)
.. .++++.++
T Consensus 158 ~~------~~l~frvK 167 (371)
T 3ivf_A 158 EH------ETLLLRRK 167 (371)
T ss_dssp TT------CEEEEEEC
T ss_pred CC------ceEEEEEE
Confidence 22 35666555
No 149
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=50.43 E-value=14 Score=25.52 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=25.9
Q ss_pred eEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEec
Q 033172 21 PFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISS 60 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~ 60 (125)
.+.|-.++|+.++++.|++. +| +++|||-..
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~---------~~~~RlW~~ 91 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFP---------QDQIRLWPM 91 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCC---------GGGCEEEEC
T ss_pred eEEEeccCcHHHHHHHHHHHhCCC---------cccEEEEEe
Confidence 46777899999999999998 66 899999543
No 150
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7
Probab=48.90 E-value=20 Score=23.62 Aligned_cols=58 Identities=10% Similarity=0.130 Sum_probs=40.9
Q ss_pred CeEEEEEEeCCCCe---eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe-ec-CCCCcccc
Q 033172 5 ELIDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-IL-ENNKTVGQ 72 (125)
Q Consensus 5 ~~v~l~~~~~~g~~---~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr-~L-~D~~tL~~ 72 (125)
++|.|+|+-.+.-. -..+.|+.+.||+++-..|..+.. .+.+=| |-+. ++ .-+.++++
T Consensus 12 ~KV~V~~~~~~~~P~l~k~KflV~~~~t~~~~~~~lRkrL~---------l~alFl-yvn~~~~Ps~d~~m~~ 74 (96)
T 1wz3_A 12 QKIVVHLRATGGAPILKQSKFKVSGSDKFANVIDFLRRQLH---------SDSLFV-YVNSAFSPNPDESVID 74 (96)
T ss_dssp CEEEEEEEECTTCCCCSCCEEEEETTSBTHHHHHHHHHHHT---------CSSCEE-EEEEEECCCTTSBHHH
T ss_pred CeEEEEEEECCCCCcccccEEEeCCCCcHHHHHHHHHHhcC---------CceEEE-EECCcccCChhhHHHH
Confidence 59999999874411 124789999999999999999954 335555 4444 55 45667765
No 151
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=48.75 E-value=53 Score=21.35 Aligned_cols=50 Identities=10% Similarity=0.038 Sum_probs=33.8
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK 62 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr 62 (125)
..+.||.... | ++..+.++++.+..+|.++|.+.++-. ....+.|-|.-.
T Consensus 5 ~~vkvK~~~~-g-di~~~~v~~~i~~~~L~~kv~~~~~~~------~~~~f~lky~DE 54 (89)
T 1vd2_A 5 SQVRVKAYYR-G-DIMITHFEPSISFEGLCNEVRDMCSFD------NEQLFTMKWIDE 54 (89)
T ss_dssp SCEEEEEESS-S-CEEEEEECTTCCHHHHHHHHHHHTTCC------SSCCEEEEECCS
T ss_pred CeEEEEEEeC-C-eEEEEECCCCCCHHHHHHHHHHHhCCC------CCCeEEEEEECC
Confidence 3444444433 4 567889999999999999999996511 124466666543
No 152
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=48.08 E-value=45 Score=20.40 Aligned_cols=57 Identities=11% Similarity=0.176 Sum_probs=34.1
Q ss_pred eEEeCCcchHHHHHHHHHhhCCCCCccC--CCC---CceeEEEecCeecCCCCccccCCCCCCC
Q 033172 21 PFRYSSASTVDMLKQRIVSDWPKGKTIV--PKA---VTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~~p~~~~~~--P~~---~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
..+++...||.+|.+.+..+.| +.... -.+ ...+.+..+|+......- .+..+++||
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p-~~~~~~l~~~~g~~~~v~v~vN~~~v~~~~~-~~~~l~~gD 79 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYG-SEFTKQMYDGNNLFKNVIILVNGNNITSMKG-LDTEIKDDD 79 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSC-HHHHHHHCCSSCSTTTCEEEESSSBGGGTCS-SSCBCCTTC
T ss_pred EEEcCCCCcHHHHHHHHHHHCc-chhhhccccccCcCcceEEEECCEEccccCC-CCcCCCCCC
Confidence 3567777899999999998865 11000 000 145678888987752211 234577774
No 153
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=47.13 E-value=21 Score=31.09 Aligned_cols=55 Identities=20% Similarity=0.323 Sum_probs=40.3
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCe-ecCCCCccccCCCC
Q 033172 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGK-ILENNKTVGQCKIP 76 (125)
Q Consensus 14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr-~L~D~~tL~~~~i~ 76 (125)
..+ ....+.+.+++|+.++++.|.++ +.+| ++.|.||+.+. .|+.....++|.+.
T Consensus 319 ~~~-~~~~~~i~~~~tl~~l~~~i~~~-----T~i~--~~~q~~~~~~~~~~~p~~~~~~~~~~ 374 (676)
T 3qa8_A 319 VSG-RVHTYPVTENENLQNLKSWLQQD-----TGIP--EEEQELLQASGLALNSAQPLTQYVID 374 (676)
T ss_dssp SSS-CCCEEECCTTCCHHHHHHHHHTT-----SCCC--STTCEEESSSSCCCCTTSCGGGSCCC
T ss_pred ccc-ccceeecCCCccHHHHHHHHHHH-----hCCC--HHHHHHHhccCCCCCCCcchhhheec
Confidence 344 34468899999999999999998 2333 78888888765 55666677776543
No 154
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=46.70 E-value=42 Score=21.46 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=20.8
Q ss_pred CCeeeeEEeC--CcchHHHHHHHHHhhCCC
Q 033172 16 GSDIGPFRYS--SASTVDMLKQRIVSDWPK 43 (125)
Q Consensus 16 g~~~~~~~v~--~~~TV~~lK~~I~~~~p~ 43 (125)
|..-..++++ +..||++|.+.+.+++|.
T Consensus 18 g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~ 47 (99)
T 2qjl_A 18 KQRVHKIKMDKEDPVTVGDLIDHIVSTMIN 47 (99)
T ss_dssp TCCEEEEEECSCSCCBHHHHHHHHHHHTCS
T ss_pred CCcEEEEecCCCCCCcHHHHHHHHHHHCch
Confidence 4333345666 678999999999999873
No 155
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=46.52 E-value=46 Score=20.00 Aligned_cols=47 Identities=11% Similarity=0.143 Sum_probs=30.7
Q ss_pred CCcchHHHHHHHHHhhCCCCCc-cCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 25 SSASTVDMLKQRIVSDWPKGKT-IVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 25 ~~~~TV~~lK~~I~~~~p~~~~-~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+..||.+|.+.+..+.| ++. ..+ .....+..+|+.... +..+++||
T Consensus 23 ~~~~tv~~ll~~L~~~~p-~~~~~l~--~~~~~v~vN~~~v~~-----~~~l~~gD 70 (81)
T 1fm0_D 23 ADFPTVEALRQHMAAQSD-RWALALE--DGKLLAAVNQTLVSF-----DHPLTDGD 70 (81)
T ss_dssp SCCSBHHHHHHHHHTTCH-HHHHHHC--CTTCEEEETTEECCT-----TCBCCTTC
T ss_pred CCCCCHHHHHHHHHHHCh-hHHHHhc--CCCEEEEECCEECCC-----CCCCCCCC
Confidence 567899999999988754 111 111 234678889988754 34566774
No 156
>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A
Probab=46.23 E-value=20 Score=33.28 Aligned_cols=78 Identities=12% Similarity=0.210 Sum_probs=51.1
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh---CCCCCccCCCCCceeEEEecCe-----ec-CCCCccccCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD---WPKGKTIVPKAVTEIKLISSGK-----IL-ENNKTVGQCKIP 76 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~---~p~~~~~~P~~~~~qrLI~~Gr-----~L-~D~~tL~~~~i~ 76 (125)
.|.|.|.+.+|. +..++++.+.|+.++|+.++.+ .|-.... .++++--+.|-.+ .+ ++.+.|-++.+-
T Consensus 42 ~i~vd~LLPnGi-~i~l~v~~~~tl~~iK~~lw~~a~~~pl~~~l--~~~~~y~f~~~~~~~~~Ee~~De~~~l~d~~~~ 118 (1091)
T 3hhm_A 42 RILVECLLPNGM-IVTLECLREATLITIKHELFKEARKYPLHQLL--QDESSYIFVSVTQEAEREEFFDETRRLCDLRLF 118 (1091)
T ss_dssp -EEEEEECTTSC-EEEEEEETTCBHHHHHHHHHHHGGGSTTGGGC--CCGGGCEEEEEBTTSCEEEECCTTSBTTTSCBS
T ss_pred ceEEEEEcCCCe-EEEEEecCCCcHHHHHHHHHHHHHhCcchhhc--CChhHeEEEEEccCceEeeeecCceeeEEeecc
Confidence 399999999995 4579999999999999999998 3311111 2355555555443 34 445566666654
Q ss_pred CCCcCCceEEEEEEEcc
Q 033172 77 YGEVPGGVIIMHVVVQP 93 (125)
Q Consensus 77 ~gd~~~~~~tmhlv~~~ 93 (125)
.. .+.++.+.
T Consensus 119 ~~-------~l~lve~~ 128 (1091)
T 3hhm_A 119 QP-------FLKVIEPV 128 (1091)
T ss_dssp SS-------EEEEECCC
T ss_pred ce-------eEEEEecC
Confidence 33 46665554
No 157
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=44.74 E-value=27 Score=26.78 Aligned_cols=76 Identities=12% Similarity=-0.078 Sum_probs=50.2
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEec---C--eecCCCCccccCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPY 77 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~---G--r~L~D~~tL~~~~i~~ 77 (125)
..+.+++.+.||... .+.+++.+|+.+|=+.|.+. +. +.+..=|.|. | +.|+.++.+.+....
T Consensus 16 ~~~~~~V~lldgt~~-~~~vd~~tt~~el~~~v~~~l~L~--------e~~~FgL~~~~~~~~~~wLd~~k~i~~q~~~- 85 (296)
T 3qij_A 16 FQGHCKVSLLDDTVY-ECVVEKHAKGQDLLKRVCEHLNLL--------EEDYFGLAIWDNATSKTWLDSAKEIKKQVRG- 85 (296)
T ss_dssp -CCEEEEECTTSCEE-EEECCTTCBHHHHHHHHHHHHTCS--------SGGGEEEEEEEETTEEEECCTTSBHHHHC---
T ss_pred ceEEEEEEccCCCEE-EEEECCCCCHHHHHHHHHHHcCCC--------CcceeEEEEEcCCCccchhccchhHHHhcCC-
Confidence 468899999999654 79999999999999999998 33 1333333332 2 367777777765321
Q ss_pred CCcCCceEEEEEEEccCC
Q 033172 78 GEVPGGVIIMHVVVQPSL 95 (125)
Q Consensus 78 gd~~~~~~tmhlv~~~~~ 95 (125)
. +..+++.++--+
T Consensus 86 ~-----~~~l~frvkfy~ 98 (296)
T 3qij_A 86 V-----PWNFTFNVKFYP 98 (296)
T ss_dssp ------CCEEEEEESSCC
T ss_pred C-----CcEEEEEEEEeC
Confidence 1 246777666443
No 158
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=44.12 E-value=1e+02 Score=23.30 Aligned_cols=76 Identities=11% Similarity=0.071 Sum_probs=53.4
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe--cCe--ecCCCCccccCCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS--SGK--ILENNKTVGQCKIPYG 78 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~--~Gr--~L~D~~tL~~~~i~~g 78 (125)
..+.+++.+.|| .+ .+.+++.+|+.+|=+.|.+. +. +.+..=|.| .|. .|+.++.|.+...+.+
T Consensus 21 ~~~~~~V~lldg-~~-~~~v~~~t~~~el~~~v~~~l~L~--------e~~~FgL~~~~~~~~~wL~~~~~i~~q~~~~~ 90 (314)
T 1h4r_A 21 KTFTVRIVTMDA-EM-EFNCEMKWKGKDLFDLVCRTLGLR--------ETWFFGLQYTIKDTVAWLKMDKKVLDHDVSKE 90 (314)
T ss_dssp CEEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHTCC--------CGGGEEEEEEETTEEEECCTTSBGGGSSCCCS
T ss_pred CeeEEEEEeCCc-eE-EEEeCCCCcHHHHHHHHHHHhCCC--------CCccceEEEEeCCcCeeCCCccCHHHcCCCCC
Confidence 568889999999 65 59999999999999999988 43 133344433 333 5788888888665433
Q ss_pred CcCCceEEEEEEEccC
Q 033172 79 EVPGGVIIMHVVVQPS 94 (125)
Q Consensus 79 d~~~~~~tmhlv~~~~ 94 (125)
.+..+++-++--
T Consensus 91 ----~~~~l~fr~kf~ 102 (314)
T 1h4r_A 91 ----EPVTFHFLAKFY 102 (314)
T ss_dssp ----SSEEEEEEESSC
T ss_pred ----CCEEEEEEEEEe
Confidence 235677766643
No 159
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=43.84 E-value=1.5e+02 Score=25.12 Aligned_cols=77 Identities=14% Similarity=0.137 Sum_probs=53.6
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEec---C--eecCCCCccccCCCCCC
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISS---G--KILENNKTVGQCKIPYG 78 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~---G--r~L~D~~tL~~~~i~~g 78 (125)
.+.+++.+.|| .+ .+.+++.+|+.+|=+.|... +. +....=|.|. | ..|+.++.+.+.++..+
T Consensus 4 ~i~v~V~llDg-t~-e~~vd~~tt~~ell~~V~~~LgL~--------e~~~FGL~~~d~~~~~~WLd~~k~i~~q~~~~~ 73 (575)
T 2i1j_A 4 SMNVRVTTMDA-EL-EFAIQQTTTGKQLFDQVVKTIGLR--------EVWFFGLQYTDSKGDLTWIKLYKKVMQQDVKKE 73 (575)
T ss_dssp EEEEEEECSSC-EE-EEEEETTCBHHHHHHHHHHHHTCC--------CGGGEEEEEEBTTSCEEECCTTSBGGGSCBCCC
T ss_pred eEEEEEEeCCC-eE-EEEECCCCCHHHHHHHHHHHcCCC--------CccceeEEEEecCcchhHhhccccHHHhcccCC
Confidence 57889999999 54 69999999999999999988 33 1334444442 2 36777888887665533
Q ss_pred CcCCceEEEEEEEccCCc
Q 033172 79 EVPGGVIIMHVVVQPSLA 96 (125)
Q Consensus 79 d~~~~~~tmhlv~~~~~~ 96 (125)
.+..+++-++--++
T Consensus 74 ----~~~~L~FRvkfy~~ 87 (575)
T 2i1j_A 74 ----NPLQFKFRAKFYPE 87 (575)
T ss_dssp ----SSEEEEEEESSCCS
T ss_pred ----CCeEEEEEEEEcCC
Confidence 33677777775444
No 160
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=43.02 E-value=38 Score=25.98 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=28.6
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
.+.-|+|-+.+|+. ..+.|++++|+.+|-+.+.++
T Consensus 7 ~~~ivkv~~~d~ss-~~l~V~~~mta~ev~~~l~~k 41 (256)
T 3hk0_A 7 AKQDVKVFSEDGTS-KVVEILADMTARDLCQLLVYK 41 (256)
T ss_dssp -CEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHCC
T ss_pred CceEEEEEecCCcE-EEEEECCCCCHHHHHHHHHHh
Confidence 45567888889855 478999999999999998877
No 161
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=42.20 E-value=36 Score=21.87 Aligned_cols=51 Identities=8% Similarity=0.122 Sum_probs=34.5
Q ss_pred CCCCeeeeEEeCCc-chHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 14 YDGSDIGPFRYSSA-STVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 14 ~~g~~~~~~~v~~~-~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+| .++++++. .||.+|.+.+. ++ ...+.+..+|+++..+ ...+..+++||
T Consensus 25 vNG---e~~el~~~~~Tv~dLL~~L~--~~---------~~~vaVavNg~iV~~~-~~~~~~L~dGD 76 (87)
T 1tyg_B 25 LNG---KDVKWKKDTGTIQDLLASYQ--LE---------NKIVIVERNKEIIGKE-RYHEVELCDRD 76 (87)
T ss_dssp ETT---EEECCSSSCCBHHHHHHHTT--CT---------TSCCEEEETTEEECGG-GTTTSBCCSSS
T ss_pred ECC---EEEECCCCCCcHHHHHHHhC--CC---------CCCEEEEECCEECChh-hcCCcCCCCCC
Confidence 466 24678887 89999988774 33 5667788999988532 22335577785
No 162
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=41.81 E-value=1.1e+02 Score=22.86 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=52.1
Q ss_pred EEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEe---cCe--ecCCCCccccCCCCCCC
Q 033172 7 IDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLIS---SGK--ILENNKTVGQCKIPYGE 79 (125)
Q Consensus 7 v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~---~Gr--~L~D~~tL~~~~i~~gd 79 (125)
+.+++.+.|| .+ .+.+++.+|+.+|=+.|.+. +. +.+..=|.| .|. .|+.++.+.+.+++.+
T Consensus 2 i~~~V~l~d~-~~-~~~v~~~tt~~el~~~v~~~l~L~--------e~~~FgL~~~~~~~~~~wLd~~~~l~~q~~~~~- 70 (294)
T 1ef1_A 2 ISVRVTTMDA-EL-EFAIQPNTTGKQLFDQVVKTIGLR--------EVWFFGLQYQDTKGFSTWLKLNKKVTAQDVRKE- 70 (294)
T ss_dssp EEEEEEETTE-EE-EEEECTTCBHHHHHHHHHHHHTCC--------CGGGEEEEEEBTTSCEEECCSSSBGGGSCBCCC-
T ss_pred EEEEEEECCc-eE-EEEECCCCcHHHHHHHHHHHcCCC--------CcceeEEEEECCCCceeecccccCHHhhccCCC-
Confidence 6788999998 54 69999999999999999998 43 133344443 232 5777888887655433
Q ss_pred cCCceEEEEEEEccCCc
Q 033172 80 VPGGVIIMHVVVQPSLA 96 (125)
Q Consensus 80 ~~~~~~tmhlv~~~~~~ 96 (125)
.+..+++-++--++
T Consensus 71 ---~~~~l~fr~kf~~~ 84 (294)
T 1ef1_A 71 ---SPLLFKFRAKFYPE 84 (294)
T ss_dssp ---SSEEEEEEESSCCS
T ss_pred ---CCEEEEEEEEEECC
Confidence 23567777764433
No 163
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=41.51 E-value=31 Score=20.29 Aligned_cols=50 Identities=10% Similarity=0.205 Sum_probs=33.7
Q ss_pred CCCCeeeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecCCCCccccCCCCCCC
Q 033172 14 YDGSDIGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILENNKTVGQCKIPYGE 79 (125)
Q Consensus 14 ~~g~~~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~D~~tL~~~~i~~gd 79 (125)
.+|+ ++++ +..||.+|.+.+... ...+.+..+|+++..+ .-.+..+++||
T Consensus 4 vNg~---~~~~-~~~tv~~ll~~l~~~-----------~~~v~vavN~~~v~~~-~~~~~~L~dgD 53 (64)
T 2cu3_A 4 LNGE---PRPL-EGKTLKEVLEEMGVE-----------LKGVAVLLNEEAFLGL-EVPDRPLRDGD 53 (64)
T ss_dssp ETTE---EECC-TTCCHHHHHHHHTBC-----------GGGEEEEETTEEEEGG-GCCCCCCCTTC
T ss_pred ECCE---EEEc-CCCcHHHHHHHcCCC-----------CCcEEEEECCEECCcc-ccCCcCCCCCC
Confidence 4663 4567 778999999887432 5677888899987532 12234577885
No 164
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=41.14 E-value=72 Score=20.72 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=41.5
Q ss_pred CCeEEEEEEeCCCCe---eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecC-CCCcccc
Q 033172 4 EELIDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE-NNKTVGQ 72 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~---~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~-D~~tL~~ 72 (125)
.++|.|||+-.+.-. -..+.|+.+.|++++-..|..+.. .+.+=|.-+..++. -+.++++
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~---------l~alFlyVNn~f~Ps~d~~~~~ 69 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLK---------MDHVYCYINNSFAPSPQQNIGE 69 (91)
T ss_dssp CCEEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHT---------CSCCEEEETTTBCCCTTSBHHH
T ss_pred CCeEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhC---------CceEEEEECCccCCCcccHHHH
Confidence 478999998765511 114789999999999999999954 35565655666653 4667665
No 165
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=39.81 E-value=90 Score=21.47 Aligned_cols=79 Identities=13% Similarity=0.153 Sum_probs=48.9
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCe--ecC--CCCccccCCCCCC
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGK--ILE--NNKTVGQCKIPYG 78 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr--~L~--D~~tL~~~~i~~g 78 (125)
+.|..++-..+.+.+ .+.+..+.|+.+|+..++++ +..+....+.+.-...+-++|. .|+ |....+.+++.
T Consensus 8 Dei~~~VY~~Dhsy~-tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~N-- 84 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYV-TIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGIN-- 84 (120)
T ss_dssp CCEEECEECTTSCCC-CEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSS--
T ss_pred CcEEEEEEeccCceE-EEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeecccc--
Confidence 667777777777554 67999999999999999999 3322112222344445567777 444 33344455554
Q ss_pred CcCCceEEEEEEEc
Q 033172 79 EVPGGVIIMHVVVQ 92 (125)
Q Consensus 79 d~~~~~~tmhlv~~ 92 (125)
.-+++..+
T Consensus 85 ------gRLfvc~k 92 (120)
T 2dhz_A 85 ------SHLFACTR 92 (120)
T ss_dssp ------EEEEEECT
T ss_pred ------ceEEEeeh
Confidence 35666555
No 166
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=38.59 E-value=56 Score=25.42 Aligned_cols=35 Identities=14% Similarity=0.228 Sum_probs=29.8
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
.++.++|-+.+|+. ..+.|++++|+.+|-+.+..+
T Consensus 30 ~k~ivkv~~~D~ss-~~l~V~~~~TA~dv~~~L~~k 64 (281)
T 4gmv_A 30 KKLVIRVHMSDDSS-KTMMVDERQTVRQVLDNLMDK 64 (281)
T ss_dssp CEEEEEEEETTSCE-EEEEEETTCBHHHHHHHHHHH
T ss_pred ccEEEEEEecCCCE-EEEEECCCCcHHHHHHHHHHh
Confidence 56778998899954 479999999999999888877
No 167
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=33.52 E-value=58 Score=21.65 Aligned_cols=25 Identities=24% Similarity=0.067 Sum_probs=21.9
Q ss_pred CeeeeEEeCCcchHHHHHHHHHhhC
Q 033172 17 SDIGPFRYSSASTVDMLKQRIVSDW 41 (125)
Q Consensus 17 ~~~~~~~v~~~~TV~~lK~~I~~~~ 41 (125)
.++..+.++++.+..+|.++|.+++
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl 46 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKI 46 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHH
Confidence 3677889999999999999999983
No 168
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=33.28 E-value=60 Score=22.68 Aligned_cols=58 Identities=12% Similarity=0.227 Sum_probs=36.1
Q ss_pred eEEeCC----cchHHHHHHHHHhh--CCCCCccCCCCCceeEEEecCeecCC-CCccccCCCCCCCc
Q 033172 21 PFRYSS----ASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLISSGKILEN-NKTVGQCKIPYGEV 80 (125)
Q Consensus 21 ~~~v~~----~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI~~Gr~L~D-~~tL~~~~i~~gd~ 80 (125)
.+.+++ ..|..+|-+.|..+ ++.+... ...+++||||-=-+=++ +++|++.|++.|.|
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~eiSV--~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsf 73 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQDISL--LDASNQRLLFDYDFEDLNDRTLSEINLGNGSI 73 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCSSEEE--EETTTTEEEEETTBCTTTTSBTTTTTCCTTCE
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCCcEEE--EecCCCCeEeCCCccccccCcHHHcCcCCCcE
Confidence 356653 45788877777666 4321111 01246788877654433 89999999999854
No 169
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=32.29 E-value=86 Score=26.27 Aligned_cols=50 Identities=16% Similarity=0.043 Sum_probs=36.0
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEE--EecCe---ecCCCCccccC
Q 033172 20 GPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKL--ISSGK---ILENNKTVGQC 73 (125)
Q Consensus 20 ~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrL--I~~Gr---~L~D~~tL~~~ 73 (125)
..+.++.+.||.+|-+.++.+..- ...+.+.+|| ||+|| +++++.+|+..
T Consensus 354 ~~l~vpK~gtV~Dll~~l~k~~~~----~~~~~~~lRl~ev~~~ki~ki~~~~~~i~~i 408 (530)
T 2ylm_A 354 ITLYPDKHGCVRDLLEECKKAVEL----GEKASGKLRLLEIVSYKIIGVHQEDELLECL 408 (530)
T ss_dssp EEECCBTTCBHHHHHHHHHTTCCC----CTTCCCCEEEEEEETTEEEEEECTTSBGGGS
T ss_pred EEEEcCCCCCHHHHHHHHHHhcCC----CcCCcccEEEEEEECCEEEEecCCCcccccc
Confidence 357778999999999999987320 0113678888 69998 45677777654
No 170
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=32.21 E-value=1e+02 Score=19.86 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=41.2
Q ss_pred CCeEEEEEEeCCCCe---eeeEEeCCcchHHHHHHHHHhhCCCCCccCCCCCceeEEEecCeecC-CCCcccc
Q 033172 4 EELIDIKFRLYDGSD---IGPFRYSSASTVDMLKQRIVSDWPKGKTIVPKAVTEIKLISSGKILE-NNKTVGQ 72 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~---~~~~~v~~~~TV~~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L~-D~~tL~~ 72 (125)
-.+|.|+|+-.+.-. -..+.|+.+.||+++...|..+.. ..| .+.+-|.-+..++. .+.++++
T Consensus 3 ~~Kv~v~fk~~g~~P~l~k~KflVp~~~tv~~~~~~lRkrL~----l~~--~~alFlyVnn~~~P~~d~~~~~ 69 (91)
T 4gdk_A 3 KKKIDILLKAVGDTPIMKTKKWAVERTRTIQGLIDFIKKFLK----LVA--SEQLFIYVNQSFAPSPDQEVGT 69 (91)
T ss_dssp -CEEEEEEEECSSSCCCSCCEEEEETTCBHHHHHHHHHHHTT----CCS--SSCCEEEETTTBCCCTTCBHHH
T ss_pred CceEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHHhC----CCC--CCeEEEEECCccCCChhhHHHH
Confidence 367888888754411 124789999999999999999832 001 34455655666664 4667765
No 171
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=31.73 E-value=39 Score=22.34 Aligned_cols=57 Identities=14% Similarity=0.251 Sum_probs=36.1
Q ss_pred eeEEeCCcchHHHHHHHHHhhCCCCCc-cCCCCC------ceeEEEecC-eecCC------CCccccCCCCCCC
Q 033172 20 GPFRYSSASTVDMLKQRIVSDWPKGKT-IVPKAV------TEIKLISSG-KILEN------NKTVGQCKIPYGE 79 (125)
Q Consensus 20 ~~~~v~~~~TV~~lK~~I~~~~p~~~~-~~P~~~------~~qrLI~~G-r~L~D------~~tL~~~~i~~gd 79 (125)
..+++++++|..++-+.+.++ | +.. ..| +. ..-.|+..+ ..|+. +++|.+.|+.+|+
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~-p-~~qlk~P-Sltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ 77 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNS-A-SLQMKSP-AITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQ 77 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHC-T-TCCCSSC-EEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTC
T ss_pred EEEEECCchhHHHHHHHHHhC-h-HhhccCC-eeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCC
Confidence 357999999999999999996 1 111 111 11 133444333 24543 6778999999883
No 172
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=30.76 E-value=72 Score=26.42 Aligned_cols=35 Identities=9% Similarity=0.146 Sum_probs=30.7
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
..+.+++.+.+|... .+.+++.+|+.+|-+.|.++
T Consensus 215 ~~~~~~V~l~dg~~~-~~~v~~~tt~~el~~~v~~~ 249 (555)
T 3au4_A 215 QEMTSTVYCHGGGSC-KITINSHTTAGEVVEKLIRG 249 (555)
T ss_dssp CCEEEEEEETTSCEE-EEEECTTCBHHHHHHHHHHH
T ss_pred CCcceEEEecCCCeE-EEEeCCCCcHHHHHHHHHHH
Confidence 457889999999654 78999999999999999999
No 173
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=28.98 E-value=88 Score=19.51 Aligned_cols=30 Identities=20% Similarity=0.060 Sum_probs=23.0
Q ss_pred EEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 8 DIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 8 ~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
+|.+.+.+|. .++++...|+.++-..|...
T Consensus 7 ~i~v~tP~G~---~~~lp~GaT~~D~A~~Ih~~ 36 (78)
T 3hvz_A 7 EVFVFTPKGD---VISLPIGSTVIDFAYAIHSA 36 (78)
T ss_dssp EEEEECTTSC---EEEEETTCBHHHHHHHHCHH
T ss_pred eEEEECCCCC---EEEecCCCCHHHHHHHhhhh
Confidence 4566678893 46899999999998877655
No 174
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=28.63 E-value=95 Score=20.80 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=29.5
Q ss_pred CCeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 4 EELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 4 ~~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
.+.|..++-..+.+.+ .+.+..+.|+.+|+..++++
T Consensus 7 sD~i~~~Vy~~Dhsy~-tvr~~v~~sa~eIl~~va~k 42 (104)
T 1wgy_A 7 GEEIFCHVYITEHSYV-SVKAKVSSIAQEILKVVAEK 42 (104)
T ss_dssp SSCCCEEEECSSSCEE-EECCCTTCBSHHHHHHHHHH
T ss_pred CCceEEEEEeccCceE-EEEEeccchHHHHHHHHHHH
Confidence 4677777777777554 67899999999999999999
No 175
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=27.46 E-value=48 Score=27.87 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=24.9
Q ss_pred eEEeCCcchHHHHHHHHHhh--CCCCCccCCCCCceeEEE
Q 033172 21 PFRYSSASTVDMLKQRIVSD--WPKGKTIVPKAVTEIKLI 58 (125)
Q Consensus 21 ~~~v~~~~TV~~lK~~I~~~--~p~~~~~~P~~~~~qrLI 58 (125)
.+.+-.++|+.+||+.|++. .| +++|||-
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~---------~~~~RlW 69 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFP---------QDQIRLW 69 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSC---------GGGEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcC---------cccEEEE
Confidence 46777899999999999998 56 8899994
No 176
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=26.68 E-value=1.1e+02 Score=18.61 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=24.2
Q ss_pred CCCCeEEEEEEeCCCCeeeeEEeCC-cchHHHHHHHHHhh
Q 033172 2 PDEELIDIKFRLYDGSDIGPFRYSS-ASTVDMLKQRIVSD 40 (125)
Q Consensus 2 ~~~~~v~l~~~~~~g~~~~~~~v~~-~~TV~~lK~~I~~~ 40 (125)
+......+++.+.+|+. .++.. .+|+.++-+.|...
T Consensus 5 ~~~~~~~i~I~lpdG~~---~~~~~~~~T~~dia~~i~~~ 41 (88)
T 1wwt_A 5 SSGDSKPIKVTLPDGKQ---VDAESWKTTPYQIACGISQG 41 (88)
T ss_dssp CCCSCCEEEEECTTSCE---EEEETTTCCHHHHHHHSSTT
T ss_pred ccCCCCCEEEEECCCCE---EEcccCCCCHHHHHHHhhhc
Confidence 33455667888888843 35555 68999988777554
No 177
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=26.16 E-value=59 Score=23.15 Aligned_cols=55 Identities=24% Similarity=0.292 Sum_probs=35.9
Q ss_pred CcchHHHHHHHHHhhCCCC--Cc------c-CCC------CCceeEEEecCeec-CCCCccccCCCCCCCc
Q 033172 26 SASTVDMLKQRIVSDWPKG--KT------I-VPK------AVTEIKLISSGKIL-ENNKTVGQCKIPYGEV 80 (125)
Q Consensus 26 ~~~TV~~lK~~I~~~~p~~--~~------~-~P~------~~~~qrLI~~Gr~L-~D~~tL~~~~i~~gd~ 80 (125)
.+.|..+|-..|.+..|.- .. . -|. -..++=-+++|+.- +|++||++++..-||+
T Consensus 62 ~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDy 132 (143)
T 4a6q_A 62 MDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDY 132 (143)
T ss_dssp TTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCE
T ss_pred CCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCE
Confidence 6789999999999886631 00 0 011 01223345666644 6799999999999964
No 178
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=25.88 E-value=91 Score=22.84 Aligned_cols=34 Identities=6% Similarity=0.087 Sum_probs=27.4
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
.+.|++-..+| ....+.|++++|+.+|-+.|.++
T Consensus 34 k~~v~v~~~d~-~~k~i~v~~~~ta~ev~~~L~~k 67 (291)
T 3tca_A 34 KLVVKVHMDDS-STKSLMVDERQLARDVLDNLFEK 67 (291)
T ss_dssp EEEEEEECTTS-CEEEEEEETTCBHHHHHHHHHHH
T ss_pred ceEEEEEcCCC-ceEEEEeCCCCcHHHHHHHHHHH
Confidence 45566766777 44578999999999999999887
No 179
>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}
Probab=25.42 E-value=85 Score=21.51 Aligned_cols=27 Identities=7% Similarity=0.137 Sum_probs=24.4
Q ss_pred CceeEEEecCeecCCCCccccCCCCCC
Q 033172 52 VTEIKLISSGKILENNKTVGQCKIPYG 78 (125)
Q Consensus 52 ~~~qrLI~~Gr~L~D~~tL~~~~i~~g 78 (125)
|=-+||.+.|++.+|+..=++|.+..|
T Consensus 60 PYyLRL~lP~~vved~~~~A~YD~d~g 86 (115)
T 3eud_A 60 PYYLRLRFPHELIDDERSTAQYDSKDE 86 (115)
T ss_dssp TEEEEEECSSCEECSTTCEEEEETTTT
T ss_pred CeEEEEecCcceecCCCcceEEeCCCc
Confidence 788999999999999888888998877
No 180
>4eo0_A Attachment protein G3P; filamentuos phage, infection, pilus binding, gene-3-protein, receptor binding, N-pilus; 1.61A {Enterobacteria phage ike}
Probab=25.27 E-value=63 Score=21.74 Aligned_cols=24 Identities=17% Similarity=0.581 Sum_probs=18.0
Q ss_pred HHHHHHHhhCCCCCccCCCCCceeEEEecCeec
Q 033172 32 MLKQRIVSDWPKGKTIVPKAVTEIKLISSGKIL 64 (125)
Q Consensus 32 ~lK~~I~~~~p~~~~~~P~~~~~qrLI~~Gr~L 64 (125)
++|-.++.-|| -++.||++.|-+.
T Consensus 58 qik~t~~g~wp---------~s~frlv~~~~c~ 81 (115)
T 4eo0_A 58 QIKLTLSGTWP---------NSQFRLVTGDTCV 81 (115)
T ss_dssp HHHHHHHHHCT---------TCCEEEEECSSCE
T ss_pred hcccceecccC---------CceEEEEeCCcee
Confidence 44555555599 8999999999765
No 181
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=23.16 E-value=1.1e+02 Score=26.27 Aligned_cols=35 Identities=20% Similarity=0.245 Sum_probs=30.8
Q ss_pred CeEEEEEEeCCCCeeeeEEeCCcchHHHHHHHHHhh
Q 033172 5 ELIDIKFRLYDGSDIGPFRYSSASTVDMLKQRIVSD 40 (125)
Q Consensus 5 ~~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~I~~~ 40 (125)
..+.+++.+.+|.. ..+.+++.+|+.+|=+.|..+
T Consensus 262 ~~i~~~V~llDgt~-~~~~vds~Tt~~ell~~V~~~ 296 (655)
T 3pvl_A 262 KPIMLPVTFMDGTT-KTLLTDSATTARELCNALADK 296 (655)
T ss_dssp CCEEEEEEETTSCE-EEEEECTTCBHHHHHHHHHHH
T ss_pred CceEEEEEecCCce-EEEEEccCCcHHHHHHHHHHH
Confidence 45788999999965 479999999999999999999
No 182
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=22.58 E-value=1e+02 Score=19.16 Aligned_cols=30 Identities=23% Similarity=0.129 Sum_probs=20.8
Q ss_pred eEEEEEEeCCCCeeeeEEeCCcchHHHHHHH
Q 033172 6 LIDIKFRLYDGSDIGPFRYSSASTVDMLKQR 36 (125)
Q Consensus 6 ~v~l~~~~~~g~~~~~~~v~~~~TV~~lK~~ 36 (125)
.++|+|...+++. ..++++++.|+.+.=+.
T Consensus 4 ~~~v~~~~~~~~~-~~~~~~~g~tlL~a~~~ 33 (98)
T 1jq4_A 4 VHTITAVTEDGES-LRFECRSDEDVITAALR 33 (98)
T ss_dssp EEEEEEEETTTEE-EEEEEESCCTHHHHHHH
T ss_pred cEEEEEEecCCCc-EEEEeCCCChHHHHHHH
Confidence 3567776666644 36899999999876433
No 183
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=21.99 E-value=1.5e+02 Score=19.65 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=27.7
Q ss_pred CCCCCeEEEEEEe----CCCCeeeeEEeCC----cchHHHHHHHHHhhCCCC
Q 033172 1 MPDEELIDIKFRL----YDGSDIGPFRYSS----ASTVDMLKQRIVSDWPKG 44 (125)
Q Consensus 1 ~~~~~~v~l~~~~----~~g~~~~~~~v~~----~~TV~~lK~~I~~~~p~~ 44 (125)
|+.-.+|.|+|-- .-|+. ..++++. ..||.+|=+.|.+++|+.
T Consensus 1 ~~~~m~v~V~f~g~l~~l~g~~-~~v~l~~~~g~~~TV~dLl~~L~~~~~~~ 51 (110)
T 2k9x_A 1 MSNHNHITVQFAGGCELLFAKQ-TSLQLDGVVPTGTNLNGLVQLLKTNYVKE 51 (110)
T ss_dssp CCCSSCCEEEEESSCGGGTTSC-SEECCCCSCGGGCCHHHHHHHHTTTTCCS
T ss_pred CCCccEEEEEEEecHHHHhCCe-EEEEeCCcCCCCccHHHHHHHHHHHcccc
Confidence 5554566666643 23332 3567763 359999999999998755
Done!