BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033173
         (125 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
          Nonribosomal Peptide Synthetase Termination Module
          Length = 1304

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 4  SAIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIAD 50
          S ++ G L +   L+P   FY E  +++V G L    +E +M +I D
Sbjct: 16 SPMQEGMLFHAI-LNPGQSFYLEQITMKVKGSLNIKCLEESMNVIMD 61


>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
          Methanococcus Jannaschii Complexed With Mg-Adp And
          Aspartate
 pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
          Methanococcus Jannaschii Complexed With Mg-Adp And
          Aspartate
 pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
          Methanococcus Jannaschii Complexed With Mg-Adp And
          Aspartate
 pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
          Methanococcus Jannaschii Complexed With Mg-Adp And
          Aspartate
          Length = 469

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 52 NAILKIDTQHL--RDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV 97
          NA+++I  Q L  RD++ +VG   +FI E H +A  EAI    +   V
Sbjct: 46 NALVEISQQALDVRDIA-KVGDFIKFIREKHYKAIEEAIKSEEIKEEV 92


>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
          Threonine-Sensitive Aspartokinase From Methanococcus
          Jannaschii With L-Threonine
 pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
          From Methanococcus Jannaschii With L-Aspartate
 pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
          From Methanococcus Jannaschii With L-Aspartate
 pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
          From Methanococcus Jannaschii With Mgamp-Pnp And
          L-Aspartate
 pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
          From Methanococcus Jannaschii With Mgamp-Pnp And
          L-Aspartate
 pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
          From Methanococcus Jannaschii With Mgamp-Pnp And
          L-Aspartate
 pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
          From Methanococcus Jannaschii With Mgamp-Pnp And
          L-Aspartate
 pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
          Threonine-Sensitive Aspartokinase From Methanococcus
          Jannaschii With L-Threonine
 pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
          Threonine-Sensitive Aspartokinase From Methanococcus
          Jannaschii With L-Threonine
 pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
          Threonine-Sensitive Aspartokinase From Methanococcus
          Jannaschii With L-Threonine
          Length = 473

 Score = 26.6 bits (57), Expect = 4.2,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 52 NAILKIDTQHL--RDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV 97
          NA+++I  Q L  RD++ +VG   +FI E H +A  EAI    +   V
Sbjct: 47 NALVEISQQALDVRDIA-KVGDFIKFIREKHYKAIEEAIKSEEIKEEV 93


>pdb|1NXQ|A Chain A, Crystal Structure Of R-Alcohol Dehydrogenase (Radh)
          (Apoenyzme) From Lactobacillus Brevis
 pdb|1ZK4|A Chain A, Structure Of R-specific Alcohol Dehydrogenase (wildtype)
          From Lactobacillus Brevis In Complex With Acetophenone
          And Nadp
          Length = 251

 Score = 26.2 bits (56), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 19/28 (67%)

Query: 20 SSQFYEEGASLRVTGKLQDYAVEAAMAI 47
          +++F EEGA + +TG+  D   +AA ++
Sbjct: 23 ATKFVEEGAKVMITGRHSDVGEKAAKSV 50


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,092,629
Number of Sequences: 62578
Number of extensions: 103901
Number of successful extensions: 223
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 5
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)