BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033173
         (125 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q86WV5|TEN1L_HUMAN CST complex subunit TEN1 OS=Homo sapiens GN=TEN1 PE=1 SV=1
          Length = 122

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 60/100 (60%), Gaps = 6/100 (6%)

Query: 25  EEGASLRVTGKLQDY-AVEAAMAIIA----DGNAILKIDTQHLRDLSFRVGSIYQFIGEL 79
            +G++LR  G+L  Y  +++ + ++A    D + +L + T+ +     +VGS+Y  +GEL
Sbjct: 20  PDGSTLRTFGRLCLYDMIQSRVTLMAQHGSDQHQVL-VCTKLVEPFHAQVGSLYIVLGEL 78

Query: 80  HIQADCEAILQARVGRNVDGLDLNLYRQSLQLLRQFQADR 119
             Q D  ++++ARV   V+G++L L  Q+++  R ++ +R
Sbjct: 79  QHQQDRGSVVKARVLTCVEGMNLPLLEQAIREQRLYKQER 118


>sp|B9M1G5|PNP_GEOSF Polyribonucleotide nucleotidyltransferase OS=Geobacter sp. (strain
           FRC-32) GN=pnp PE=3 SV=1
          Length = 696

 Score = 30.8 bits (68), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 2/75 (2%)

Query: 26  EGASLRVTGKLQDYAVEAAMA-IIADGNAILKIDTQHLRDLSFRVGSIYQFIGE-LHIQA 83
           EGA+  + G L D+  +     II DG  I   DT+ +R ++  VG + +  G  L  + 
Sbjct: 284 EGAAKEIKGFLGDFEYDLVREHIIKDGERIDGRDTKTIRQITTEVGLLPRAHGSALFTRG 343

Query: 84  DCEAILQARVGRNVD 98
           + +A++ A +G ++D
Sbjct: 344 ETQALVVATLGTSID 358


>sp|Q9D7K2|TEN1L_MOUSE CST complex subunit TEN1 OS=Mus musculus GN=Ten1 PE=1 SV=1
          Length = 161

 Score = 30.4 bits (67), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 21/89 (23%), Positives = 43/89 (48%), Gaps = 4/89 (4%)

Query: 25  EEGASLRVTGKLQDYAVEAAMAIIA----DGNAILKIDTQHLRDLSFRVGSIYQFIGELH 80
            EG++LR  G+L  Y +  ++  +A         L + T  +      V  +Y  +G+L 
Sbjct: 20  PEGSTLRTFGRLYLYDMARSLMTLAAPQKPDQCQLLVCTNLVEPFEAHVNFLYMVLGDLE 79

Query: 81  IQADCEAILQARVGRNVDGLDLNLYRQSL 109
                  +++AR+   V+G+DL+L  +++
Sbjct: 80  RMEGGAFVVRARLLTCVEGMDLSLLEKAI 108


>sp|A1URS7|SECA_BARBK Protein translocase subunit SecA OS=Bartonella bacilliformis
           (strain ATCC 35685 / KC583) GN=secA PE=3 SV=1
          Length = 910

 Score = 30.0 bits (66), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 3/70 (4%)

Query: 55  LKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQ--LL 112
           +K D Q L++ S   G +Y    E H     +  L+ R GR  D      +  SLQ  L+
Sbjct: 533 IKQDVQKLKEKSLAAGGLYVLATERHESRRIDNQLRGRSGRQGDPGRSKFF-LSLQDDLM 591

Query: 113 RQFQADRMNN 122
           R F +DRM++
Sbjct: 592 RIFGSDRMDS 601


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.365 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,937,280
Number of Sequences: 539616
Number of extensions: 1295863
Number of successful extensions: 3652
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3651
Number of HSP's gapped (non-prelim): 9
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)