BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033174
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DI7|A Chain A, Structure Of A2-type Ketoreductase Of Modular Polyketide
Synthases
Length = 556
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 47 SAMLAERLGNEENVVQSTSGLFTCAVCQIDLAP 79
+A+LA LG+++ + +SG+FT + + D AP
Sbjct: 256 AAVLAGALGDDDQIALRSSGVFTRRIVRADAAP 288
>pdb|2K3V|A Chain A, Solution Structure Of A Tetrahaem Cytochrome From
Shewanella Frigidimarina
Length = 86
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 70 CAVCQIDLAPS--------EGISVHAGSI--FSTSSKPWQGPFLCADCRNKKDAMEGKRP 119
C C D PS + S H GS+ + KP G +CADC +A G++P
Sbjct: 15 CENCHADGEPSKDGAYEFEQCQSCH-GSLAEMDDNHKPHDGLLMCADCHAPHEAKVGEKP 73
Query: 120 S 120
+
Sbjct: 74 T 74
>pdb|1C9W|A Chain A, Cho Reductase With Nadp+
Length = 315
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 51/120 (42%), Gaps = 22/120 (18%)
Query: 24 DSANKLSKK---LSAVGIVEELFEEG----------SAMLAERLGNEENVV------QST 64
D N L+ K L A ++EEL +EG + ER+ N+ + Q
Sbjct: 126 DQGNVLTSKITFLDAWEVMEELVDEGLVKALGVSNFNHFQIERILNKPGLKHKPVTNQVE 185
Query: 65 SGLFTCAVCQIDLAPSEGISVHAGSIFSTSSKPW---QGPFLCADCRNKKDAMEGKRPSG 121
+ I+ S+GI+V A S + ++PW + P L D + K+ A + K+ S
Sbjct: 186 CHPYLTQEKLIEYCHSKGITVTAYSPLGSPNRPWAKPEDPSLLEDPKIKEIAAKHKKTSA 245
>pdb|1M1P|A Chain A, P21 Crystal Structure Of The Tetraheme Cytochrome C3 From
Shewanella Oneidensis Mr1
pdb|1M1P|B Chain B, P21 Crystal Structure Of The Tetraheme Cytochrome C3 From
Shewanella Oneidensis Mr1
pdb|1M1P|C Chain C, P21 Crystal Structure Of The Tetraheme Cytochrome C3 From
Shewanella Oneidensis Mr1
pdb|1M1P|D Chain D, P21 Crystal Structure Of The Tetraheme Cytochrome C3 From
Shewanella Oneidensis Mr1
pdb|1M1P|E Chain E, P21 Crystal Structure Of The Tetraheme Cytochrome C3 From
Shewanella Oneidensis Mr1
pdb|1M1P|F Chain F, P21 Crystal Structure Of The Tetraheme Cytochrome C3 From
Shewanella Oneidensis Mr1
pdb|1M1Q|A Chain A, P222 Oxidized Structure Of The Tetraheme Cytochrome C From
Shewanella Oneidensis Mr1
pdb|1M1R|A Chain A, Reduced P222 Crystal Structure Of The Tetraheme Cytochrome
C Of Shewanella Oneidensis Mr1
Length = 91
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 96 KPWQGPFLCADCRNKKDAMEGKRPS 120
KP G +CADC D G++P+
Sbjct: 50 KPHDGNLVCADCHAVHDMNVGQKPT 74
>pdb|2DFY|X Chain X, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
pdb|2DFY|C Chain C, Crystal Structure Of A Cyclized Protein Fusion Of Lmo4 Lim
Domains 1 And 2 With The Lim Interacting Domain Of Ldb1
Length = 195
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 68 FTCAVCQIDLAPSEGISVHAGSIFSTSSKP 97
FTC+ C+ L P + GS+F +P
Sbjct: 96 FTCSTCRNRLVPGDRFHYINGSLFCEHDRP 125
>pdb|3PF0|A Chain A, Crystal Structure Of An Imelysin-Like Protein (Psyc_1802)
From Psychrobacter Arcticum 273-4 At 2.15 A Resolution
Length = 364
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 37 GIVEELFEEGSAMLAERLGNEENVVQSTSGL 67
G V +L A+ AE+L NE VVQ GL
Sbjct: 141 GGVADLITANPALTAEQLANESAVVQGIPGL 171
>pdb|1RUT|X Chain X, Complex Of Lmo4 Lim Domains 1 And 2 With The Ldb1 Lid
Domain
Length = 188
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 68 FTCAVCQIDLAPSEGISVHAGSIFSTSSKP 97
FTC+ C+ L P + GS+F +P
Sbjct: 98 FTCSTCRNRLVPGDRFHYINGSLFCEHDRP 127
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 23 LDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEENVVQSTSG 66
LD A ++K LSA+G V EGS + R ++Q + G
Sbjct: 248 LDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLG 291
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 23 LDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEENVVQSTSG 66
LD A ++K LSA+G V EGS + R ++Q + G
Sbjct: 248 LDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLG 291
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 23 LDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEENVVQSTSG 66
LD A ++K LSA+G V EGS + R ++Q + G
Sbjct: 248 LDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLG 291
>pdb|3MKQ|B Chain B, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|D Chain D, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|F Chain F, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 177
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 22 SLDSANKLSKKLSAVGIVEELFEEGSAMLAERLGNEENVVQSTSGLF 68
+LD A KL+ ++ +++E +G+A LAE + ++ S L+
Sbjct: 24 ALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLY 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,943,613
Number of Sequences: 62578
Number of extensions: 98203
Number of successful extensions: 273
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 13
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)