BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033175
MLKNPLQETAEDRRMAAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSW
DKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGWLERGLV
QPWKV

High Scoring Gene Products

Symbol, full name Information P value
AT3G04650 protein from Arabidopsis thaliana 1.9e-37
AT1G55980 protein from Arabidopsis thaliana 2.9e-11
PSPPH_1014
Uncharacterized protein
protein from Pseudomonas syringae pv. phaseolicola 1448A 4.1e-06
PFL_5143
FAD dependent oxidoreductase
protein from Pseudomonas protegens Pf-5 2.4e-05

The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033175
        (125 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084903 - symbol:AT3G04650 species:3702 "Arabi...   402  1.9e-37   1
TAIR|locus:2012030 - symbol:AT1G56000 species:3702 "Arabi...   163  1.9e-11   1
TAIR|locus:2012005 - symbol:AT1G55980 species:3702 "Arabi...   163  2.9e-11   1
UNIPROTKB|Q48MT7 - symbol:PSPPH_1014 "Uncharacterized pro...   113  4.1e-06   1
UNIPROTKB|Q4K6B1 - symbol:PFL_5143 "FAD dependent oxidore...   106  2.4e-05   1


>TAIR|locus:2084903 [details] [associations]
            symbol:AT3G04650 species:3702 "Arabidopsis thaliana"
            [GO:0005739 "mitochondrion" evidence=ISM] [GO:0009507 "chloroplast"
            evidence=IDA] GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
            EMBL:AC011437 eggNOG:COG3380 EMBL:AY050342 EMBL:BT004515
            IPI:IPI00525811 RefSeq:NP_566235.1 UniGene:At.26589
            ProteinModelPortal:Q9SR09 SMR:Q9SR09 PaxDb:Q9SR09 PRIDE:Q9SR09
            EnsemblPlants:AT3G04650.1 GeneID:819623 KEGG:ath:AT3G04650
            TAIR:At3g04650 HOGENOM:HOG000244162 InParanoid:Q9SR09 OMA:QARIASW
            PhylomeDB:Q9SR09 ProtClustDB:CLSN2688068 Genevestigator:Q9SR09
            Uniprot:Q9SR09
        Length = 486

 Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
 Identities = 79/123 (64%), Positives = 93/123 (75%)

Query:     3 KNP-LQETAEDRRMAAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWD 61
             +NP  Q+     +       + KK+F QEQVTFTA VS DP V IIGGGMAGL CAL+ +
Sbjct:    53 RNPNFQKRRNSSKYGTSRRSILKKSFLQEQVTFTARVSDDPHVAIIGGGMAGLVCALNLE 112

Query:    62 KRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGWLERGLVQ 121
              RGV+STVFDTG HGLG R+GTR+I PQ LIFDHAAQFFT +DSRF +LVDGWLE+GLV+
Sbjct:   113 ARGVQSTVFDTGIHGLGGRLGTRIIEPQGLIFDHAAQFFTADDSRFIKLVDGWLEKGLVR 172

Query:   122 PWK 124
              WK
Sbjct:   173 EWK 175


>TAIR|locus:2012030 [details] [associations]
            symbol:AT1G56000 species:3702 "Arabidopsis thaliana"
            [GO:0016491 "oxidoreductase activity" evidence=IEA] [GO:0055114
            "oxidation-reduction process" evidence=IEA] EMBL:CP002684
            UniGene:At.48312 UniGene:At.71152 eggNOG:COG3380 UniGene:At.48311
            EMBL:AY069897 EMBL:AY142026 EMBL:AK316780 IPI:IPI00533415
            RefSeq:NP_175996.2 ProteinModelPortal:Q8VYV2 SMR:Q8VYV2
            IntAct:Q8VYV2 PRIDE:Q8VYV2 EnsemblPlants:AT1G56000.1 GeneID:842051
            KEGG:ath:AT1G56000 TAIR:At1g56000 InParanoid:Q8VYV2 KO:K06955
            OMA:APCWTLM PhylomeDB:Q8VYV2 ProtClustDB:CLSN2690468
            Genevestigator:Q8VYV2 Uniprot:Q8VYV2
        Length = 384

 Score = 163 (62.4 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 37/85 (43%), Positives = 49/85 (57%)

Query:    43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRM-IGP--QPLIFDHAAQF 99
             +V +IG G++G  CA +  + GV  T+FD+G  G G RM  R  IG   + L+FDH A F
Sbjct:    22 KVAVIGSGISGAVCASTLARNGVSVTIFDSGR-GPGGRMSQRREIGEDGKELMFDHGAPF 80

Query:   100 FTVNDSRFRELVDGWLERGLVQPWK 124
             F V++S    LV  W  RG V  WK
Sbjct:    81 FCVSNSDAMALVHEWESRGFVSEWK 105


>TAIR|locus:2012005 [details] [associations]
            symbol:AT1G55980 species:3702 "Arabidopsis thaliana"
            [GO:0005634 "nucleus" evidence=ISM] [GO:0016491 "oxidoreductase
            activity" evidence=IEA] [GO:0055114 "oxidation-reduction process"
            evidence=IEA] InterPro:IPR016040 EMBL:CP002684 GO:GO:0000166
            Gene3D:3.40.50.720 UniGene:At.71152 IPI:IPI00532476
            RefSeq:NP_175994.2 UniGene:At.48311 ProteinModelPortal:F4I3I1
            SMR:F4I3I1 EnsemblPlants:AT1G55980.1 GeneID:842049
            KEGG:ath:AT1G55980 OMA:ENAFRCK PhylomeDB:F4I3I1 Uniprot:F4I3I1
        Length = 466

 Score = 163 (62.4 bits), Expect = 2.9e-11, P = 2.9e-11
 Identities = 37/85 (43%), Positives = 49/85 (57%)

Query:    43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRM-IGP--QPLIFDHAAQF 99
             +V +IG G++G  CA +  + GV  T+FD+G  G G RM  R  IG   + L+FDH A F
Sbjct:   160 KVAVIGSGISGAVCASTLARNGVSVTIFDSGR-GPGGRMSQRREIGEDGKELMFDHGAPF 218

Query:   100 FTVNDSRFRELVDGWLERGLVQPWK 124
             F V++S    LV  W  RG V  WK
Sbjct:   219 FCVSNSDAMALVHEWESRGFVSEWK 243


>UNIPROTKB|Q48MT7 [details] [associations]
            symbol:PSPPH_1014 "Uncharacterized protein" species:264730
            "Pseudomonas syringae pv. phaseolicola 1448A" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR002937 Pfam:PF01593 GO:GO:0016491 EMBL:CP000058
            GenomeReviews:CP000058_GR eggNOG:COG3380 KO:K06955 OMA:QARIASW
            RefSeq:YP_273285.1 ProteinModelPortal:Q48MT7 SMR:Q48MT7
            STRING:Q48MT7 GeneID:3560140 KEGG:psp:PSPPH_1014 PATRIC:19971120
            HOGENOM:HOG000225370 ProtClustDB:CLSK868815 Uniprot:Q48MT7
        Length = 328

 Score = 113 (44.8 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 29/80 (36%), Positives = 40/80 (50%)

Query:    44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVN 103
             + IIG G+AGL+ A +    G +  +FD  + G G RM ++      L  D  AQ+FT  
Sbjct:     5 IAIIGTGIAGLSAAQALTSAGHQVHLFDK-SRGSGGRMSSKRSDAGSL--DMGAQYFTAR 61

Query:   104 DSRFRELVDGWLERGLVQPW 123
             D RF   V  W  +G V  W
Sbjct:    62 DRRFATAVKQWQAQGHVSEW 81


>UNIPROTKB|Q4K6B1 [details] [associations]
            symbol:PFL_5143 "FAD dependent oxidoreductase"
            species:220664 "Pseudomonas protegens Pf-5" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005575 "cellular_component"
            evidence=ND] [GO:0008150 "biological_process" evidence=ND]
            InterPro:IPR002937 Pfam:PF01593 GO:GO:0016491 EMBL:CP000076
            GenomeReviews:CP000076_GR eggNOG:COG3380 KO:K06955 OMA:QARIASW
            HOGENOM:HOG000225370 ProtClustDB:CLSK868815 RefSeq:YP_262222.1
            ProteinModelPortal:Q4K6B1 SMR:Q4K6B1 STRING:Q4K6B1 GeneID:3479547
            KEGG:pfl:PFL_5143 PATRIC:19879749
            BioCyc:PFLU220664:GIX8-5184-MONOMER Uniprot:Q4K6B1
        Length = 328

 Score = 106 (42.4 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 29/80 (36%), Positives = 39/80 (48%)

Query:    44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVN 103
             + IIG G+AGL+ A +    G    +FD  + G G RM ++      L  D  AQ+FT  
Sbjct:     5 IAIIGTGIAGLSAAQALRDAGHTVHLFDK-SRGSGGRMSSKRSDAGSL--DLGAQYFTAR 61

Query:   104 DSRFRELVDGWLERGLVQPW 123
             D RF   V  W  +G V  W
Sbjct:    62 DRRFVTEVQRWQAKGWVAEW 81


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       125   0.00091  102 3  11 22  0.36    31
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  570 (61 KB)
  Total size of DFA:  131 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.28u 0.14s 11.42t   Elapsed:  00:00:01
  Total cpu time:  11.28u 0.14s 11.42t   Elapsed:  00:00:01
  Start:  Mon May 20 21:27:37 2013   End:  Mon May 20 21:27:38 2013

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