BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033175
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQ 98
SS RV +IG G++GLA A G+ TVF+ G+ R + LI+D A
Sbjct: 11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGK---LRSVSQDGLIWDEGAN 67
Query: 99 FFTVNDSRFRELVD 112
T ++ L+D
Sbjct: 68 TXTESEGDVTFLID 81
>pdb|3KKJ|A Chain A, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
pdb|3KKJ|B Chain B, X-Ray Structure Of P. Syringae Q888a4 Oxidoreductase At
Resolution 2.5a, Northeast Structural Genomics
Consortium Target Psr10
Length = 336
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVN 103
+ IIG G+AGL+ A + G + +FD GR R D AQ+FT
Sbjct: 5 IAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRXSSKRS---DAGALDXGAQYFTAR 61
Query: 104 DSRFRELVDGWLERGLVQPW 123
D RF V W +G V W
Sbjct: 62 DRRFATAVKQWQAQGHVAEW 81
>pdb|2GQF|A Chain A, Crystal Structure Of Flavoprotein Hi0933 From
Haemophilus Influenzae Rd
Length = 401
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81
IIG G AGL CA K G TVFD G +GR++
Sbjct: 9 IIGAGAAGLFCAAQLAKLGKSVTVFDNGKK-IGRKI 43
>pdb|3EF6|A Chain A, Crystal Structure Of Toluene 2,3-Dioxygenase Reductase
pdb|4EMI|A Chain A, Toluene Dioxygenase Reductase In Reduced State In Complex
With Nad+
pdb|4EMJ|A Chain A, Complex Between The Reductase And Ferredoxin Components Of
Toluene Dioxygenase
Length = 410
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRM 85
+S R+ I+GGG+ G A + K G+ T+ + G+ L R +G R+
Sbjct: 141 TSATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRI 187
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 2/71 (2%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDS 105
I+G G+ G CA K K V + NH G G Q I + A F ND
Sbjct: 6 IVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQ--IHKYGAHIFHTNDK 63
Query: 106 RFRELVDGWLE 116
+ V+ +E
Sbjct: 64 YIWDYVNDLVE 74
>pdb|3PVC|A Chain A, Crystal Structure Of Apo Mnmc From Yersinia Pestis
pdb|3SGL|A Chain A, The Crystal Structure Of Mnmc From Yersinia Pestis Bound
With Fad And Sam
Length = 689
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 40/104 (38%), Gaps = 9/104 (8%)
Query: 26 TFAQEQVTFTAPVSSDPR------VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
T Q+ TAP P + IIGGG+ AL+ +RG T++
Sbjct: 243 TLPQQIHAPTAPWYHRPAATRCDDIAIIGGGIVSALTALALQRRGAVVTLYCADAQPAQG 302
Query: 80 RMGTRMIGPQPLI---FDHAAQFFTVNDSRFRELVDGWLERGLV 120
G R PL+ D FFT + R D LE+G+
Sbjct: 303 ASGNRQGALYPLLNGKNDALETFFTSAFTFARRQYDQLLEQGIA 346
>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
pdb|2Q7V|B Chain B, Crystal Structure Of Deinococcus Radiodurans Thioredoxin
Reductase
Length = 325
Score = 30.4 bits (67), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 35 TAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHG 76
TAP + D V IIGGG AGL A+ + + + + + G G
Sbjct: 2 TAPTAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKGMPG 43
>pdb|4EIP|A Chain A, Native And K252c Bound Rebc-10x
pdb|4EIP|B Chain B, Native And K252c Bound Rebc-10x
pdb|4EIQ|A Chain A, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
pdb|4EIQ|B Chain B, Chromopyrrolic Acid-Soaked Rebc-10x With Bound
7-Carboxy-K252c
Length = 549
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 34 FTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74
AP+ +D V I+GGG G+A AL R V V D G+
Sbjct: 21 MNAPIETD--VLILGGGPVGMALALDLAHRQVGHLVVDAGD 59
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 28.9 bits (63), Expect = 0.75, Method: Composition-based stats.
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 9/77 (11%)
Query: 3 KNPLQETAEDRRMAAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDK 62
+NPL+E + D + F + + S+ RV I+G GM+GL+ A
Sbjct: 17 RNPLEECFR---------ETDYEEFLEIAKNGLSTTSNPKRVVIVGAGMSGLSAAYVLAN 67
Query: 63 RGVKSTVFDTGNHGLGR 79
G + TV + G+
Sbjct: 68 AGHQVTVLEASERAGGQ 84
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 37 PVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMI 86
P ++ V ++GGG++GLA A RG + + ++ LG +GT +
Sbjct: 12 PRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR-LGGAVGTHAL 60
>pdb|1PS9|A Chain A, The Crystal Structure And Reaction Mechanism Of E. Coli
2,4- Dienoyl Coa Reductase
Length = 671
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 37 PVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFD 71
P + ++G G AGLA A++ RG + T+FD
Sbjct: 369 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFD 403
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In
The Dynamic Active Site
Length = 486
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 39 SSDPR-VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
+S+P+ V ++G GM+GL+ A G K TV + GR
Sbjct: 30 TSNPKHVVVVGAGMSGLSAAYVLAGAGHKVTVLEASERAGGR 71
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81
PRV ++G GM+G++ A + G+ + +G RM
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM 44
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81
PRV ++G GM+G++ A + G+ + +G RM
Sbjct: 5 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRM 44
>pdb|4AJ4|A Chain A, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|B Chain B, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|C Chain C, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
pdb|4AJ4|D Chain D, Rat Ldha In Complex With
4-((2-Allylsulfanyl-1,3-Benzothizol-6-Yl)
Amino)-4-Oxo-Butanoic Acid
Length = 332
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 15 MAAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALS 59
MAA + QL +EQV ++ ++G G G+ACA+S
Sbjct: 1 MAALKDQLIVNLLKEEQV-------PQNKITVVGVGAVGMACAIS 38
>pdb|1F8R|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8R|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma Complexed With Citrate
pdb|1F8S|A Chain A, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|B Chain B, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|C Chain C, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|D Chain D, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|E Chain E, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|F Chain F, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|G Chain G, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|1F8S|H Chain H, Crystal Structure Of L-Amino Acid Oxidase From
Calloselasma Rhodostoma, Complexed With Three Molecules
Of O-Aminobenzoate.
pdb|2IID|A Chain A, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|B Chain B, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|C Chain C, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
pdb|2IID|D Chain D, Structure Of L-Amino Acid Oxidase From Calloselasma
Rhodostoma In Complex With L-Phenylalanine
Length = 498
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 39 SSDPR-VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
+S+P+ V I+G GMAGL+ A G + TV + GR
Sbjct: 30 TSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGR 71
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDT 72
V IIGGG AG + A +RG+K + D+
Sbjct: 9 VLIIGGGFAGSSAAYQLSRRGLKILLVDS 37
>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0K|B Chain B, Oxidized Thioredoxin Reductase From Helicobacter Pylori In
Complex With Nadp+
pdb|2Q0L|A Chain A, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|2Q0L|B Chain B, Helicobacter Pylori Thioredoxin Reductase Reduced By
Sodium Dithionite In Complex With Nadp+
pdb|3ISH|A Chain A, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|B Chain B, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
pdb|3ISH|C Chain C, Crystal Structure Of Helicobacter Pylori Thioredoxin
Reductase
Length = 311
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 20/80 (25%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTV-FDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVND 104
IIGGG AGL+ L + GVK+ V F+ G G G+ G+ I P +
Sbjct: 6 IIGGGPAGLSAGLYATRGGVKNAVLFEKGMPG-GQITGSSEIENYPGV------------ 52
Query: 105 SRFRELVDGWLERGLVQPWK 124
+E+V G +QPW+
Sbjct: 53 ---KEVVSGL---DFMQPWQ 66
>pdb|2JAE|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JAE|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In The Unbound State
pdb|2JB1|A Chain A, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB1|B Chain B, The L-Amino Acid Oxidase From Rhodococcus Opacus In
Complex With L-Alanine
pdb|2JB3|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB3|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With O-Aminobenzoate
pdb|2JB2|A Chain A, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine.
pdb|2JB2|B Chain B, The Structure Of L-Amino Acid Oxidase From Rhodococcus
Opacus In Complex With L-Phenylalanine
Length = 489
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 19/42 (45%)
Query: 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
V V ++GGG AGL A K G K TV + GR
Sbjct: 8 VKGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGR 49
>pdb|3DGH|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
pdb|3DGH|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
C-Terminal 8- Residue Truncation
Length = 483
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 36 APV--SSDPRVGIIGGGMAGLACA 57
APV S D + +IGGG AGLACA
Sbjct: 2 APVQGSYDYDLIVIGGGSAGLACA 25
>pdb|2I6T|A Chain A, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|2I6T|B Chain B, Orthorhombic Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|A Chain A, Hexagonal Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
pdb|3DL2|B Chain B, Hexagonal Structure Of The Ldh Domain Of Human
Ubiquitin- Conjugating Enzyme E2-Like Isoform A
Length = 303
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 43 RVGIIGGGMAGLACALSWDKRGV 65
++ ++GGG G+AC L+ +G+
Sbjct: 16 KITVVGGGELGIACTLAISAKGI 38
>pdb|1REO|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys Pallas
pdb|1TDK|A Chain A, L-amino Acid Oxidase From Agkistrodon Halys In Complex
With Suicide Substrate L-vinylglycine
pdb|1TDN|A Chain A, L-Amino Acid Oxidase From Agkistrodon Halys In Complex
With L-Leucine
pdb|1TDO|A Chain A, L-Amino Acid Oxidae From Agkistrodon Halys In Complex
With L- Phenylalanine
Length = 486
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 39 SSDPR-VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
+S+P+ V ++G GM+GL+ A G + TV + GR
Sbjct: 30 TSNPKHVVVVGAGMSGLSAAYVLSGAGHQVTVLEASERAGGR 71
>pdb|2NVK|X Chain X, Crystal Structure Of Thioredoxin Reductase From
Drosophila Melanogaster
Length = 488
Score = 27.3 bits (59), Expect = 2.4, Method: Composition-based stats.
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
Query: 36 APV--SSDPRVGIIGGGMAGLACA 57
APV S D + +IGGG AGLACA
Sbjct: 2 APVQGSYDYDLIVIGGGSAGLACA 25
>pdb|2UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|3UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|4UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|1UAG|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
Length = 437
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDT 72
V IIG G+ GL+C + RGV V DT
Sbjct: 7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDT 36
>pdb|1E0D|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
pdb|1EEH|A Chain A, Udp-N-Acetylmuramoyl-L-Alanine:d-Glutamate Ligase
Length = 437
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDT 72
V IIG G+ GL+C + RGV V DT
Sbjct: 7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDT 36
>pdb|2WJP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Rhodanine Inhibitor
pdb|2X5O|A Chain A, Discovery Of Novel 5-Benzylidenerhodanine- And
5-Benzylidene- Thiazolidine-2,4-Dione Inhibitors Of
Murd Ligase
pdb|2XPC|A Chain A, Second-Generation Sulfonamide Inhibitors Of Murd:
Activity Optimisation With Conformationally Rigid
Analogues Of D- Glutamic Acid
Length = 439
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDT 72
V IIG G+ GL+C + RGV V DT
Sbjct: 7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDT 36
>pdb|2JFF|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Sulfonamide Inhibitor
pdb|2JFG|A Chain A, Crystal Structure Of Murd Ligase In Complex With Uma And
Adp
pdb|2JFH|A Chain A, Crystal Structure Of Murd Ligase In Complex With L-Glu
Containing Sulfonamide Inhibitor
pdb|2UUO|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Sulfonamide Inhibitor
pdb|2UUP|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Sulfonamide Inhibitor
pdb|2VTD|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Sulfonamide Inhibitor
pdb|2VTE|A Chain A, Crystal Structure Of Murd Ligase In Complex With D-Glu
Containing Sulfonamide Inhibitor
pdb|2Y68|A Chain A, Structure-Based Design Of A New Series Of D-Glutamic
Acid- Based Inhibitors Of Bacterial Murd Ligase
pdb|2Y66|A Chain A, New 5-Benzylidenethiazolidine-4-One Inhibitors Of
Bacterial Murd Ligase: Design, Synthesis, Crystal
Structures, And Biological Evaluation
pdb|2Y67|A Chain A, New 5-Benzylidenethiazolidine-4-One Inhibitors Of
Bacterial Murd Ligase: Design, Synthesis, Crystal
Structures, And Biological Evaluation
pdb|2Y1O|A Chain A, Dual-target Inhibitor Of Murd And Mure Ligases: Design,
Synthesis And Binding Mode Studies
Length = 445
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDT 72
V IIG G+ GL+C + RGV V DT
Sbjct: 8 NVVIIGLGLTGLSCVDFFLARGVTPRVMDT 37
>pdb|3IHM|A Chain A, Structure Of The Oxygenase Component Of A Pseudomonas
Styrene Monooxygenase
pdb|3IHM|B Chain B, Structure Of The Oxygenase Component Of A Pseudomonas
Styrene Monooxygenase
Length = 430
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVF 70
R+GI+G G AGL L + V TV+
Sbjct: 24 RIGIVGAGTAGLHLGLFLRQHDVDVTVY 51
>pdb|1Q1R|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1R|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|A Chain A, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
pdb|1Q1W|B Chain B, Crystal Structure Of Putidaredoxin Reductase From
Pseudomonas Putida
Length = 431
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
+D R+ +IGGG GL A + K + T+ DT L R
Sbjct: 148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER 187
>pdb|3LB8|A Chain A, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
pdb|3LB8|B Chain B, Crystal Structure Of The Covalent Putidaredoxin Reductase-
Putidaredoxin Complex
Length = 436
Score = 26.9 bits (58), Expect = 3.1, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
+D R+ +IGGG GL A + K + T+ DT L R
Sbjct: 147 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER 186
>pdb|2CVJ|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|A Chain A, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
pdb|2YWL|B Chain B, Crystal Structure Of Thioredoxin Reductase-Related
Protein Ttha0370 From Thermus Thermophilus Hb8
Length = 180
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFDTG 73
++GGG +GL+ AL + G+K V D G
Sbjct: 6 VVGGGPSGLSAALFLARAGLKVLVLDGG 33
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVF 70
+IGGG+AGL A++ ++G+ + V
Sbjct: 10 VIGGGLAGLRAAVATQQKGLSTIVL 34
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVF 70
+IGGG+AGL A++ ++G+ + V
Sbjct: 10 VIGGGLAGLRAAVATQQKGLSTIVL 34
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 26.6 bits (57), Expect = 3.5, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVF 70
+IGGG+AGL A++ ++G+ + V
Sbjct: 10 VIGGGLAGLRAAVATQQKGLSTIVL 34
>pdb|2VI7|A Chain A, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|B Chain B, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
pdb|2VI7|C Chain C, Structure Of A Putative Acetyltransferase (Pa1377)from
Pseudomonas Aeruginosa
Length = 177
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 3 KNPLQETAEDRRMAAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDK 62
+ L ++A+D R+ L Q V +A + PR+ G G+ A++W
Sbjct: 46 RKRLHDSADDDRL------LILVALHQGDVIGSASLEQHPRIRRSHSGSIGMGVAVAWQG 99
Query: 63 RGVKSTVF 70
+GV S +
Sbjct: 100 KGVGSRLL 107
>pdb|2R0C|A Chain A, Structure Of The Substrate-Free Form Of The Rebeccamycin
Biosynthetic Enzyme Rebc
pdb|2R0G|A Chain A, Chromopyrrolic Acid-Soaked Rebc With Bound
7-Carboxy-K252c
pdb|2R0G|B Chain B, Chromopyrrolic Acid-Soaked Rebc With Bound
7-Carboxy-K252c
pdb|2R0P|A Chain A, K252c-Soaked Rebc
pdb|3EPT|A Chain A, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
pdb|3EPT|B Chain B, Structure Of The Rebeccamycin Biosynthetic Enzyme Rebc
With Reduced Flavin
Length = 549
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Query: 34 FTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR-RMGTRMIGPQPL 91
AP+ +D V I+GGG G+A AL R V V + + + R+GT IGP+ +
Sbjct: 21 MNAPIETD--VLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGT--IGPRSM 75
>pdb|3DGZ|A Chain A, Crystal Structure Of Mouse Mitochondrial Thioredoxin
Reductase, C- Terminal 3-Residue Truncation
Length = 488
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFD 71
+IGGG GLACA + G K V D
Sbjct: 11 VIGGGSGGLACAKEAAQLGKKVAVAD 36
>pdb|1ZDL|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
pdb|1ZKQ|A Chain A, Crystal Structure Of Mouse Thioredoxin Reductase Type 2
Length = 517
Score = 26.6 bits (57), Expect = 4.1, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFD 71
+IGGG GLACA + G K V D
Sbjct: 37 VIGGGSGGLACAKEAAQLGKKVAVAD 62
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 84 RMIGPQPLIFDHA--AQFFTVNDSRFRELVDGW 114
+ +G QP++FDH A + V+ +++ + V W
Sbjct: 13 KSVGGQPIVFDHVKGAHIWDVDGNQYIDYVGSW 45
>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter
Jejuni.
pdb|3R9U|B Chain B, Thioredoxin-Disulfide Reductase From Campylobacter
Jejuni
Length = 315
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTV-FDTGNHG 76
V IIGGG AGL+ L + G+K+ V F+ G G
Sbjct: 7 VAIIGGGPAGLSAGLYATRGGLKNVVXFEKGXPG 40
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase From
Azotobacter Vinelandii At 2.2 Angstroms Resolution. A
Comparison With The Structure Of Glutathione Reductase
Length = 476
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVFD 71
++G+IG G+ GL W + G + TV +
Sbjct: 182 KLGVIGAGVIGLELGSVWARLGAEVTVLE 210
>pdb|1LPF|A Chain A, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
pdb|1LPF|B Chain B, Three-Dimensional Structure Of Lipoamide Dehydrogenase
From Pseudomonas Fluorescens At 2.8 Angstroms
Resolution. Analysis Of Redox And Thermostability
Properties
Length = 477
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVFD 71
++G+IG G+ GL W + G + TV +
Sbjct: 182 KLGVIGAGVIGLELGSVWARLGAEVTVLE 210
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
V I+G G++GLA A + K G+ V + + GR
Sbjct: 8 VAIVGAGISGLAAATALRKAGLSVAVIEARDRVGGR 43
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVFD 71
+V IIGGG AG L+ K G T+++
Sbjct: 25 KVAIIGGGPAGSVAGLTLHKLGHDVTIYE 53
>pdb|3DH9|A Chain A, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
pdb|3DH9|B Chain B, Crystal Structure Of Drosophila Thioredoxin Reductase,
Wild-Type
Length = 482
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 39 SSDPRVGIIGGGMAGLACA 57
S D + +IGGG AGLACA
Sbjct: 3 SYDYDLIVIGGGSAGLACA 21
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 25.8 bits (55), Expect = 6.3, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 27 FAQEQVTFT-----APVSSDPRVGIIGGGMAGLACALSWDKRG 64
AQE V FT AP+SS R G++ G M SW G
Sbjct: 59 LAQEGVKFTDYYAPAPLSSPSRAGLLTGRMPFRTGIRSWIPSG 101
>pdb|5LDH|A Chain A, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
pdb|5LDH|B Chain B, Structure Of The Active Ternary Complex Of Pig Heart
Lactate Dehydrogenase With S-Lac-Nad At 2.7 Angstroms
Resolution
Length = 334
Score = 25.8 bits (55), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Query: 27 FAQEQVTFTAPVSSDPRVGIIGGGMAGLACALS 59
AQ++ T D ++ ++G G G+ACA+S
Sbjct: 12 VAQQETTI-----PDNKITVVGVGQVGMACAIS 39
>pdb|2VOU|A Chain A, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|B Chain B, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
pdb|2VOU|C Chain C, Structure Of 2,6-dihydroxypyridine-3-hydroxylase From
Arthrobacter Nicotinovorans
Length = 397
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVFD 71
R+ ++GG ++GL AL GV V++
Sbjct: 7 RIAVVGGSISGLTAALMLRDAGVDVDVYE 35
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 25.4 bits (54), Expect = 9.1, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 37 PVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
P +V IIG G++GLA A G+ T+ + + GR
Sbjct: 103 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 145
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 37 PVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
P +V IIG G++GLA A G+ T+ + + GR
Sbjct: 104 PTKKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGR 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,858,529
Number of Sequences: 62578
Number of extensions: 149050
Number of successful extensions: 584
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 94
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)