BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033175
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum
GN=PPXII PE=1 SV=1
Length = 504
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQ 98
SS RV +IG G++GLA A G+ TVF+ G+ R + LI+D A
Sbjct: 11 SSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGK---LRSVSQDGLIWDEGAN 67
Query: 99 FFTVNDSRFRELVD 112
T ++ L+D
Sbjct: 68 TMTESEGDVTFLID 81
>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia
oleracea GN=POX2 PE=1 SV=1
Length = 531
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 30 EQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQ 89
E+ P+S+ RV ++G G++GLA A G+ T+F+ + G+ + +
Sbjct: 32 ERNQVNQPISAK-RVAVVGAGVSGLAAAYKLKSNGLNVTLFEADSRAGGK---LKTVVKD 87
Query: 90 PLIFDHAAQFFTVNDSRFRELVD 112
LI+D A T +D L D
Sbjct: 88 GLIWDEGANTMTESDEEVTSLFD 110
>sp|B5ET22|GLPB_VIBFM Anaerobic glycerol-3-phosphate dehydrogenase subunit B OS=Vibrio
fischeri (strain MJ11) GN=glpB PE=3 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFDTGNHGL 77
IIGGGMAGL+CAL + G+K+ V +G L
Sbjct: 7 IIGGGMAGLSCALRCLEAGLKTAVIASGQSAL 38
>sp|Q5E0X7|GLPB_VIBF1 Anaerobic glycerol-3-phosphate dehydrogenase subunit B OS=Vibrio
fischeri (strain ATCC 700601 / ES114) GN=glpB PE=3 SV=1
Length = 455
Score = 37.4 bits (85), Expect = 0.030, Method: Composition-based stats.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFDTGNHGL 77
IIGGGMAGL+CAL + G+K+ V +G L
Sbjct: 7 IIGGGMAGLSCALRCLEAGLKTAVIASGQSAL 38
>sp|P43800|GLPB_HAEIN Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus influenzae (strain ATCC 51907 / DSM
11121 / KW20 / Rd) GN=glpB PE=3 SV=1
Length = 432
Score = 37.0 bits (84), Expect = 0.037, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGL 77
V IIGGG+AGL CA++ +RG + + + G +
Sbjct: 5 VAIIGGGLAGLTCAIALQQRGKRCVIINNGQAAI 38
>sp|P37127|AEGA_ECOLI Protein AegA OS=Escherichia coli (strain K12) GN=aegA PE=3 SV=2
Length = 659
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 20/31 (64%)
Query: 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFD 71
D RV IIG G AGLACA + GV TV+D
Sbjct: 327 DKRVAIIGAGPAGLACADVLTRNGVGVTVYD 357
>sp|P09832|GLTD_ECOLI Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain
K12) GN=gltD PE=1 SV=3
Length = 472
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVFD 71
+V IIG G AGLACA + GVK+ VFD
Sbjct: 148 KVAIIGAGPAGLACADVLTRNGVKAVVFD 176
>sp|Q6LSE4|GLPB_PHOPR Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Photobacterium profundum GN=glpB PE=3 SV=1
Length = 442
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMG-----TRMIGPQPLIFDHAA 97
IIGGG+AGL+CA+ + G+K+ V G L G +R+ QP+ AA
Sbjct: 7 IIGGGVAGLSCAIRCAEAGMKTAVIAAGQSALHFSSGSIDFLSRLPNGQPVYHPMAA 63
>sp|A5UE48|GLPB_HAEIE Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus influenzae (strain PittEE) GN=glpB PE=3
SV=1
Length = 432
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGL 77
V IIGGG+AGL C ++ +RG + + + G +
Sbjct: 5 VAIIGGGLAGLTCGIALQQRGKRCVIINNGQAAI 38
>sp|A5UHH2|GLPB_HAEIG Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus influenzae (strain PittGG) GN=glpB PE=3
SV=1
Length = 432
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGL 77
V IIGGG+AGL C ++ +RG + + + G +
Sbjct: 5 VAIIGGGLAGLTCGIAIQQRGKRCVIINNGQAAI 38
>sp|A8FTT1|MNMC_SHESH tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella sediminis (strain HAW-EB3)
GN=mnmC PE=3 SV=1
Length = 712
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 12/115 (10%)
Query: 5 PLQETAEDRRMAAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKRG 64
PLQE R A R Q DK + D + IIGGG+A ALS +R
Sbjct: 255 PLQE-----RRALRHAQSDKFQYCPVSAANEGDEDCDGEIAIIGGGVASTHLALSLAQRN 309
Query: 65 VKSTVFDTGNHGLGRRMGTRMIGPQPLIF---DHAAQFFT----VNDSRFRELVD 112
K +F + + + G + PL+ H + +F R + LVD
Sbjct: 310 KKVRIFCSDANFAQQASGNKQGAVYPLLTPDNGHLSHYFQQGYLFTRRRLQALVD 364
>sp|Q65R09|GLPB_MANSM Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=glpB PE=3 SV=1
Length = 431
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83
V IIG G+AGL C L+ ++GV+ + + G L G+
Sbjct: 5 VVIIGAGIAGLTCGLTLQEKGVRCAIINNGQAALDFSSGS 44
>sp|P44246|MNMC_HAEIN tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain ATCC
51907 / DSM 11121 / KW20 / Rd) GN=mnmC PE=3 SV=2
Length = 670
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAA---QFF 100
V IIGGG+A L A+S KRG K T++ + G + P + D A F+
Sbjct: 266 VAIIGGGIASLCAAISLIKRGAKVTIYCEDDALALNASGNKQGAFYPQLSDDNALTVDFY 325
Query: 101 TVNDSRFRELVDGWLERGLV 120
S R+L+D +E+ +V
Sbjct: 326 LHAFSYGRQLLDWAIEQNIV 345
>sp|P73668|MURD_SYNY3 UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=murD PE=3 SV=1
Length = 452
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 9/81 (11%)
Query: 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFT 101
P+ +IG G +G+A A + G + TVFD ++ R MG QPL+ + +
Sbjct: 2 PQACVIGLGRSGIAAARVLHRDGWQVTVFDQADNDQLRHMG------QPLVQEGIS--LK 53
Query: 102 VNDSRFRELVDGWLERGLVQP 122
+ D R + + W ER +V P
Sbjct: 54 LGD-RLDPVKEAWPERIVVSP 73
>sp|Q8TZL4|NADB_PYRFU L-aspartate oxidase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=nadB PE=3 SV=1
Length = 464
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTVF 70
+V ++G G+AGL A+S K+G++ TVF
Sbjct: 2 KVAVVGSGLAGLTAAMSLAKKGIEVTVF 29
>sp|P44941|Y933_HAEIN Uncharacterized protein HI_0933 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0933 PE=1
SV=1
Length = 401
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81
IIG G AGL CA K G TVFD G +GR++
Sbjct: 9 IIGAGAAGLFCAAQLAKLGKSVTVFDNGKK-IGRKI 43
>sp|Q8SR40|GPDH_ENCCU Probable glycerol-3-phosphate dehydrogenase OS=Encephalitozoon
cuniculi (strain GB-M1) GN=ECU10_0870 PE=3 SV=1
Length = 614
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFDTGNHGLG 78
++GGG G CAL RG+K + D G+ G G
Sbjct: 60 VVGGGSTGAGCALDGATRGLKVALVDAGDFGSG 92
>sp|O81360|ABA2_PRUAR Zeaxanthin epoxidase, chloroplastic OS=Prunus armeniaca PE=2 SV=1
Length = 661
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 36/78 (46%), Gaps = 12/78 (15%)
Query: 4 NPLQETAEDRRMAAREGQLDKKTFAQEQVTF-------TAPVSSDP---RVGIIGGGMAG 53
+P T R R GQ KK + + T +AP S+ P R+ + GGG+ G
Sbjct: 35 SPCIHTDYHLRSRTRSGQ--KKCLTEVRATVASPTEVPSAPASTQPKKLRILVAGGGIGG 92
Query: 54 LACALSWDKRGVKSTVFD 71
L AL+ K+G VF+
Sbjct: 93 LVFALAAKKKGFDVVVFE 110
>sp|A5UCC9|MNMC_HAEIE tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain PittEE)
GN=mnmC PE=3 SV=1
Length = 670
Score = 33.5 bits (75), Expect = 0.39, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVF 70
V IIGGG+A L A+S KRG K T++
Sbjct: 266 VAIIGGGIASLCAAISLVKRGAKVTIY 292
>sp|Q7VM49|GLPB_HAEDU Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724)
GN=glpB PE=3 SV=1
Length = 426
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83
V IIGGG+AGL C ++ K+G + + + G + G+
Sbjct: 5 VVIIGGGLAGLTCGIALQKQGKQCAIINNGQAAIDFSSGS 44
>sp|A5WGY8|MNMC_PSYWF tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Psychrobacter sp. (strain PRwf-1)
GN=mnmC PE=3 SV=1
Length = 739
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 28 AQEQVTF-TAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFD-----TGNHGLGRRM 81
++EQVT T V+ + ++ +IG G+ GL A S +RG ++ D G G R +
Sbjct: 310 SKEQVTLDTHAVTPNEQIAVIGAGVCGLMAAWSLAQRGNAVSLIDKEAPLAGASGNPRAL 369
Query: 82 GTRMIGPQPLIFDHAAQFFTVNDSRFRELVD 112
+ P + +H + RF +D
Sbjct: 370 LAPKMTPLAHVAEHLHSISYLYSQRFYRQID 400
>sp|A4WCP1|GLPB_ENT38 Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Enterobacter sp. (strain 638) GN=glpB PE=3 SV=1
Length = 419
Score = 33.1 bits (74), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 46 IIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83
IIGGG+AG+ C L +RG++ + G L G+
Sbjct: 7 IIGGGLAGILCGLKLTQRGLRCAIVSRGQSALHFSSGS 44
>sp|Q5E450|MNMC_VIBF1 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=mnmC PE=3 SV=1
Length = 680
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLI---FDHAAQFF 100
V IIGGG+A A A + +RGVK +V+ G + PL+ F+ ++FF
Sbjct: 274 VAIIGGGVASAALATTLIRRGVKVSVYCKDEKSAQGASGNKQGAVYPLLNEKFNSLSRFF 333
Query: 101 TVNDSRFRELVD 112
R+ +D
Sbjct: 334 APGFIFARQFID 345
>sp|Q9V2R0|NADB_PYRAB L-aspartate oxidase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=nadB PE=3 SV=1
Length = 464
Score = 32.7 bits (73), Expect = 0.60, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 41 DPRVGIIGGGMAGLACALSWDKRGVKSTV 69
D VGI+GGG+AGL A+S ++GV ++
Sbjct: 3 DMEVGIVGGGLAGLVAAISLVEKGVDVSI 31
>sp|A6WQ09|MNMC_SHEB8 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella baltica (strain OS185)
GN=mnmC PE=3 SV=1
Length = 685
Score = 32.7 bits (73), Expect = 0.68, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 9/86 (10%)
Query: 21 QLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVF----DTGNHG 76
Q D K +A + ++ + IIGGG+A ALS +RG + VF + G
Sbjct: 252 QQDAKAYAFNPMAAILSSATQSSIAIIGGGLASAHLALSLAERGQGAQVFCKDAELGQGA 311
Query: 77 LGRRMGT--RMIGPQPLIFDHAAQFF 100
G R G ++ P+ D ++FF
Sbjct: 312 SGNRQGAIYPLLTPEN---DELSRFF 334
>sp|A6VKT7|GLPB_ACTSZ Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Actinobacillus succinogenes (strain ATCC 55618 /
130Z) GN=glpB PE=3 SV=1
Length = 430
Score = 32.7 bits (73), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83
V IIGGG+AGL C ++ ++G + + + G + G+
Sbjct: 5 VVIIGGGLAGLTCGIALQEQGKRCAIVNNGQAAMDFSTGS 44
>sp|Q0HWM0|MNMC_SHESR tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella sp. (strain MR-7) GN=mnmC
PE=3 SV=2
Length = 703
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 36 APVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIF-- 93
A V+ D V I+GGG+A LS +RG ST+F N G R PL+
Sbjct: 275 ALVAKDHPVAIVGGGLASANLMLSLAERGQSSTLFCKDNELGQGASGNRQGAIYPLLTPE 334
Query: 94 -DHAAQFF 100
D ++FF
Sbjct: 335 NDELSRFF 342
>sp|Q0HKB8|MNMC_SHESM tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Shewanella sp. (strain MR-4) GN=mnmC
PE=3 SV=2
Length = 699
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 35 TAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIF- 93
TA + D + I+GGG+A LS +RG ST+F N G R PL+
Sbjct: 270 TALATKDHPIAIVGGGLASANLMLSLAERGQSSTLFCKDNELGQGASGNRQGAIYPLLTP 329
Query: 94 --DHAAQFF 100
D ++FF
Sbjct: 330 ENDELSRFF 338
>sp|Q9S449|TRMFO_MYXXD Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Myxococcus xanthus (strain DK 1622) GN=trmFO
PE=1 SV=2
Length = 457
Score = 32.3 bits (72), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 43 RVGIIGGGMAGLACALSWDKRGV 65
RV +IGGG+AG CA +RGV
Sbjct: 7 RVTVIGGGLAGTECAYQLSRRGV 29
>sp|Q1MQ25|TRMFO_LAWIP Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Lawsonia intracellularis (strain PHE/MN1-00)
GN=trmFO PE=3 SV=1
Length = 445
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFD 71
+ IIGGG++G CAL+ K G T+F+
Sbjct: 6 IAIIGGGLSGCECALTLAKFGFSVTLFE 33
>sp|Q21988|AMX1_CAEEL Amine oxidase family member 1 OS=Caenorhabditis elegans GN=amx-1
PE=3 SV=3
Length = 824
Score = 32.3 bits (72), Expect = 0.98, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPL 91
P++ IIG G++G++ A G+ + +F+ + R G RM+ Q L
Sbjct: 352 PKIAIIGAGISGISTARHLKHLGIDAVLFEAKD-----RFGGRMMDDQSL 396
>sp|Q729K0|TRMFO_DESVH Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Desulfovibrio vulgaris (strain Hildenborough /
ATCC 29579 / NCIMB 8303) GN=trmFO PE=3 SV=1
Length = 474
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 45 GIIGGGMAGLACALSWDKRGVKSTVFD 71
IIG G+AG CAL + GV+ T+F+
Sbjct: 12 AIIGAGLAGCECALRLARAGVRVTLFE 38
>sp|Q54EW2|Y9130_DICDI Putative bifunctional amine oxidase DDB_G0291301 OS=Dictyostelium
discoideum GN=DDB_G0291301 PE=1 SV=1
Length = 1080
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 35 TAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83
T D VGIIG GMAGL A+ G++ + + +G R+ T
Sbjct: 499 TKASQKDLTVGIIGAGMAGLYAAMILQDLGLQYNILEANKERVGGRIYT 547
>sp|A1VBW6|TRMFO_DESVV Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Desulfovibrio vulgaris subsp. vulgaris (strain
DP4) GN=trmFO PE=3 SV=1
Length = 482
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 45 GIIGGGMAGLACALSWDKRGVKSTVFD 71
IIG G+AG CAL + GV+ T+F+
Sbjct: 8 AIIGAGLAGCECALRLARAGVRVTLFE 34
>sp|Q4QKP6|MNMC_HAEI8 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain 86-028NP)
GN=mnmC PE=3 SV=1
Length = 670
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVF 70
V IIGGG+A A+S KRG K T++
Sbjct: 266 VAIIGGGIASFCAAISLVKRGAKVTIY 292
>sp|Q0I2W9|MNMC_HAES1 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus somnus (strain 129Pt)
GN=mnmC PE=3 SV=1
Length = 676
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVF 70
+ IIGGG+A L ALS KRG K T++
Sbjct: 265 IAIIGGGIASLFTALSLLKRGAKVTLY 291
>sp|Q6D2N1|MNMC_ERWCT tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=mnmC PE=3 SV=1
Length = 675
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLI---FD 94
S+ + IIGGG+A + AL+ +RG T++ + G R PL+ D
Sbjct: 262 ASTTDDIAIIGGGIASVLTALALQRRGANVTLYCAESQPATGASGNRQGALYPLLNNRHD 321
Query: 95 HAAQFFTV 102
++FF++
Sbjct: 322 AVSRFFSL 329
>sp|A5UEH1|MNMC_HAEIG tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus influenzae (strain PittGG)
GN=mnmC PE=3 SV=1
Length = 670
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 45 GIIGGGMAGLACALSWDKRGVKSTVF 70
IIGGG+A L A+S KRG K T++
Sbjct: 267 AIIGGGIASLCAAISLVKRGAKVTIY 292
>sp|Q7N4V5|HCAD_PHOLL 3-phenylpropionate/cinnamic acid dioxygenase ferredoxin--NAD(+)
reductase component OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=hcaD PE=3 SV=1
Length = 394
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79
V D R+ I+GGG+ GL A + + G TV + ++ +GR
Sbjct: 141 VKKDKRILIVGGGVIGLELAATSCELGANVTVIEQADNIMGR 182
>sp|B0BTN3|GLPB_ACTPJ Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Actinobacillus pleuropneumoniae serotype 3 (strain
JL03) GN=glpB PE=3 SV=1
Length = 428
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83
V IIGGG+AGL C ++ ++G + + + G + G+
Sbjct: 5 VVIIGGGLAGLTCGIALQEQGKRCVIINNGQAAIDFSSGS 44
>sp|B3H0P4|GLPB_ACTP7 Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Actinobacillus pleuropneumoniae serotype 7 (strain
AP76) GN=glpB PE=3 SV=1
Length = 428
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83
V IIGGG+AGL C ++ ++G + + + G + G+
Sbjct: 5 VVIIGGGLAGLTCGIALQEQGKRCVIINNGQAAIDFSSGS 44
>sp|A3MZ98|GLPB_ACTP2 Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Actinobacillus pleuropneumoniae serotype 5b (strain
L20) GN=glpB PE=3 SV=1
Length = 428
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83
V IIGGG+AGL C ++ ++G + + + G + G+
Sbjct: 5 VVIIGGGLAGLTCGIALQEQGKRCVIINNGQAAIDFSSGS 44
>sp|B0UT85|MNMC_HAES2 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional
protein MnmC OS=Haemophilus somnus (strain 2336) GN=mnmC
PE=3 SV=1
Length = 676
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVF 70
+ IIGGG+A L ALS KRG K T++
Sbjct: 265 IAIIGGGIASLFTALSLLKRGAKITLY 291
>sp|Q0JCU7|ZEP_ORYSJ Zeaxanthin epoxidase, chloroplastic OS=Oryza sativa subsp. japonica
GN=ZEP PE=2 SV=1
Length = 659
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFD 71
PRV + GGG+ GL AL+ ++G + TVF+
Sbjct: 78 PRVLVAGGGIGGLVLALAARRKGYEVTVFE 107
>sp|A8QL51|OXLA_BUNMU L-amino-acid oxidase OS=Bungarus multicinctus PE=2 SV=1
Length = 517
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 10 AEDRRMAARE--GQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKS 67
A+DRR E + D + F + S+ V ++G GMAGL+ A +K G +
Sbjct: 19 ADDRRSPLEECFREADYEEFLEIARNGLKKTSNPKHVVVVGAGMAGLSAAYVLEKAGHRV 78
Query: 68 TVFDTGNHGLGR 79
T+ + + GR
Sbjct: 79 TLLEASDRVGGR 90
>sp|C6DH98|GLPB_PECCP Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Pectobacterium carotovorum subsp. carotovorum
(strain PC1) GN=glpB PE=3 SV=1
Length = 420
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGL 77
V IIGGG+AGL C + ++G + + G + L
Sbjct: 5 VVIIGGGLAGLTCGIRLAEQGKRCAIVSAGQNAL 38
>sp|Q6CZI7|GLPB_ERWCT Anaerobic glycerol-3-phosphate dehydrogenase subunit B OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=glpB PE=3 SV=1
Length = 420
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGL 77
V IIGGG+AGL C + ++G + + G + L
Sbjct: 5 VVIIGGGLAGLTCGIRLAEQGKRCAIVSAGQNAL 38
>sp|Q312C5|TRMFO_DESDG Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO OS=Desulfovibrio desulfuricans (strain G20)
GN=trmFO PE=3 SV=2
Length = 446
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 45 GIIGGGMAGLACALSWDKRGVKSTVFDTGNHGL 77
I+GGG+AG CA + G+ T+F+ H
Sbjct: 8 AIVGGGLAGCECARKLARAGIAVTLFEMKPHSF 40
>sp|Q4QMN2|GLPB_HAEI8 Anaerobic glycerol-3-phosphate dehydrogenase subunit B
OS=Haemophilus influenzae (strain 86-028NP) GN=glpB
PE=3 SV=1
Length = 432
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGL 77
V IIGGG+AGL C ++ + G + + + G +
Sbjct: 5 VAIIGGGLAGLTCGIALQQCGKRCVIINNGQAAI 38
>sp|O57765|NADB_PYRHO L-aspartate oxidase OS=Pyrococcus horikoshii (strain ATCC 700860
/ DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=nadB
PE=3 SV=1
Length = 464
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 43 RVGIIGGGMAGLACALSWDKRGVKSTV 69
RVGI+GGG+AGL A++ ++G ++
Sbjct: 5 RVGIVGGGLAGLTAAIALAEKGFDVSI 31
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,830,956
Number of Sequences: 539616
Number of extensions: 1948494
Number of successful extensions: 6308
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 6115
Number of HSP's gapped (non-prelim): 249
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)