Query 033175
Match_columns 125
No_of_seqs 157 out of 1518
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 10:44:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033175.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033175hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3380 Predicted NAD/FAD-depe 99.6 2.9E-15 6.2E-20 109.2 8.0 79 43-124 3-81 (331)
2 PF13450 NAD_binding_8: NAD(P) 99.5 1.3E-13 2.9E-18 81.6 6.7 65 46-113 1-67 (68)
3 PRK07208 hypothetical protein; 99.3 6.1E-12 1.3E-16 98.5 8.4 74 39-115 2-75 (479)
4 PRK11883 protoporphyrinogen ox 99.3 4.4E-12 9.4E-17 98.1 7.3 69 42-113 1-71 (451)
5 KOG0029 Amine oxidase [Seconda 99.3 7.9E-12 1.7E-16 98.9 8.4 66 38-105 12-77 (501)
6 TIGR00562 proto_IX_ox protopor 99.3 6.5E-12 1.4E-16 97.8 7.6 70 42-114 3-76 (462)
7 PLN02576 protoporphyrinogen ox 99.3 1E-11 2.2E-16 97.7 8.0 72 39-113 10-82 (496)
8 PRK07233 hypothetical protein; 99.3 1E-11 2.2E-16 95.4 7.4 69 43-114 1-69 (434)
9 PLN02612 phytoene desaturase 99.3 1.9E-11 4.1E-16 98.1 8.2 109 4-114 54-164 (567)
10 PRK12416 protoporphyrinogen ox 99.3 1.5E-11 3.3E-16 96.0 6.9 70 42-114 2-77 (463)
11 PLN02268 probable polyamine ox 99.2 2.1E-11 4.5E-16 94.5 7.5 69 42-113 1-71 (435)
12 COG1233 Phytoene dehydrogenase 99.2 1.6E-11 3.5E-16 96.9 6.2 62 40-104 2-63 (487)
13 COG3349 Uncharacterized conser 99.2 3.6E-11 7.7E-16 94.1 6.8 72 42-115 1-72 (485)
14 TIGR02733 desat_CrtD C-3',4' d 99.2 9.9E-11 2.1E-15 92.2 7.3 58 42-102 2-59 (492)
15 TIGR02734 crtI_fam phytoene de 99.1 1.1E-10 2.4E-15 92.0 7.0 66 44-113 1-66 (502)
16 TIGR02731 phytoene_desat phyto 99.1 1.6E-10 3.5E-15 90.0 7.7 70 43-114 1-70 (453)
17 PLN02487 zeta-carotene desatur 99.1 3E-10 6.5E-15 91.2 9.1 95 17-113 47-145 (569)
18 COG1232 HemY Protoporphyrinoge 99.1 1.7E-10 3.7E-15 90.0 7.4 72 43-120 2-75 (444)
19 COG0562 Glf UDP-galactopyranos 99.1 2.3E-10 5.1E-15 85.4 7.7 73 42-115 2-75 (374)
20 TIGR02732 zeta_caro_desat caro 99.1 4.2E-10 9E-15 88.6 7.6 69 43-113 1-69 (474)
21 PRK12831 putative oxidoreducta 99.0 2.4E-09 5.2E-14 84.2 10.2 65 16-81 115-179 (464)
22 TIGR02730 carot_isom carotene 99.0 1.1E-09 2.5E-14 86.3 7.4 57 42-101 1-57 (493)
23 PLN02568 polyamine oxidase 99.0 1.6E-09 3.5E-14 86.6 8.2 70 41-113 5-80 (539)
24 KOG1276 Protoporphyrinogen oxi 99.0 1.5E-09 3.2E-14 83.7 7.4 80 39-120 9-90 (491)
25 PRK12775 putative trifunctiona 99.0 2.8E-09 6.1E-14 90.5 9.6 65 15-81 405-469 (1006)
26 COG1635 THI4 Ribulose 1,5-bisp 99.0 5.5E-10 1.2E-14 79.7 4.5 41 41-81 30-70 (262)
27 TIGR00031 UDP-GALP_mutase UDP- 99.0 1.8E-09 3.8E-14 83.0 7.5 72 42-115 2-73 (377)
28 PRK12769 putative oxidoreducta 99.0 5.8E-09 1.3E-13 85.0 9.8 66 15-81 300-366 (654)
29 PRK13977 myosin-cross-reactive 98.9 3.4E-09 7.5E-14 84.8 8.1 73 39-113 20-96 (576)
30 PRK12779 putative bifunctional 98.9 5.7E-09 1.2E-13 88.1 9.6 42 39-81 304-345 (944)
31 KOG0685 Flavin-containing amin 98.9 3.4E-09 7.3E-14 82.5 7.5 71 40-113 20-92 (498)
32 PRK12810 gltD glutamate syntha 98.9 9.8E-09 2.1E-13 80.8 10.2 66 15-81 116-182 (471)
33 PF01946 Thi4: Thi4 family; PD 98.9 1.1E-09 2.4E-14 78.0 4.1 39 41-80 17-55 (230)
34 PRK12809 putative oxidoreducta 98.9 1.1E-08 2.4E-13 83.3 10.1 67 14-81 282-349 (639)
35 TIGR03315 Se_ygfK putative sel 98.9 8.6E-09 1.9E-13 87.2 9.6 42 39-81 535-576 (1012)
36 PLN02676 polyamine oxidase 98.9 4.8E-09 1E-13 83.0 7.4 59 40-101 25-84 (487)
37 PLN02529 lysine-specific histo 98.9 6.3E-09 1.4E-13 85.7 8.2 64 39-103 158-223 (738)
38 COG1231 Monoamine oxidase [Ami 98.9 6.9E-09 1.5E-13 80.5 7.7 62 39-103 5-66 (450)
39 PLN02172 flavin-containing mon 98.9 3.7E-09 7.9E-14 83.2 6.3 44 38-82 7-50 (461)
40 TIGR03329 Phn_aa_oxid putative 98.9 6.2E-09 1.4E-13 81.6 7.2 36 39-74 22-59 (460)
41 COG2907 Predicted NAD/FAD-bind 98.9 4.9E-09 1.1E-13 79.3 6.2 73 39-113 6-81 (447)
42 TIGR01316 gltA glutamate synth 98.9 2.3E-08 5E-13 78.3 10.2 65 16-81 107-172 (449)
43 PF01266 DAO: FAD dependent ox 98.9 4.9E-09 1.1E-13 78.0 5.9 31 43-73 1-31 (358)
44 PLN02328 lysine-specific histo 98.9 1E-08 2.2E-13 85.0 7.9 64 39-103 236-301 (808)
45 TIGR01318 gltD_gamma_fam gluta 98.8 3.6E-08 7.8E-13 77.6 10.2 66 15-81 114-180 (467)
46 PRK12778 putative bifunctional 98.8 3.7E-08 8E-13 81.5 10.4 66 15-81 404-470 (752)
47 PRK01747 mnmC bifunctional tRN 98.8 1.6E-08 3.5E-13 82.5 7.9 33 41-73 260-292 (662)
48 PRK09853 putative selenate red 98.8 3.3E-08 7.1E-13 83.6 9.8 42 39-81 537-578 (1019)
49 PRK11749 dihydropyrimidine deh 98.8 5.1E-08 1.1E-12 76.4 10.0 66 15-81 114-179 (457)
50 KOG0399 Glutamate synthase [Am 98.8 2.6E-08 5.7E-13 84.2 8.3 65 16-81 1759-1824(2142)
51 COG0644 FixC Dehydrogenases (f 98.8 1.1E-08 2.3E-13 78.9 5.4 33 41-73 3-35 (396)
52 PRK07364 2-octaprenyl-6-methox 98.8 1.2E-08 2.7E-13 78.4 5.8 38 38-75 15-52 (415)
53 COG0493 GltD NADPH-dependent g 98.8 4E-08 8.7E-13 77.2 8.6 67 14-81 95-162 (457)
54 COG0665 DadA Glycine/D-amino a 98.8 3E-08 6.5E-13 75.3 7.5 36 40-75 3-38 (387)
55 TIGR01377 soxA_mon sarcosine o 98.8 2.3E-08 5E-13 75.9 6.6 32 42-73 1-32 (380)
56 PRK12771 putative glutamate sy 98.8 9.6E-08 2.1E-12 76.7 10.4 64 17-81 113-176 (564)
57 PRK11259 solA N-methyltryptoph 98.7 2.5E-08 5.4E-13 75.6 6.6 34 41-74 3-36 (376)
58 COG2081 Predicted flavoprotein 98.7 1E-08 2.3E-13 78.5 4.5 35 40-74 2-36 (408)
59 PF01494 FAD_binding_3: FAD bi 98.7 1.3E-08 2.8E-13 75.6 4.9 34 42-75 2-35 (356)
60 TIGR00292 thiazole biosynthesi 98.7 2E-08 4.3E-13 73.5 5.6 35 41-75 21-55 (254)
61 PLN03000 amine oxidase 98.7 4.4E-08 9.6E-13 81.7 8.2 64 40-104 183-248 (881)
62 TIGR01317 GOGAT_sm_gam glutama 98.7 1.1E-07 2.3E-12 75.3 10.0 66 15-81 116-182 (485)
63 PRK12814 putative NADPH-depend 98.7 1.3E-07 2.9E-12 77.2 10.3 43 38-81 190-232 (652)
64 PRK08010 pyridine nucleotide-d 98.7 2.1E-08 4.6E-13 78.1 5.4 42 41-82 3-44 (441)
65 PRK04176 ribulose-1,5-biphosph 98.7 2.7E-08 5.9E-13 72.8 5.5 38 41-79 25-62 (257)
66 PRK10157 putative oxidoreducta 98.7 3E-08 6.5E-13 77.2 5.6 33 41-73 5-37 (428)
67 TIGR01373 soxB sarcosine oxida 98.7 5.1E-08 1.1E-12 75.0 6.6 46 27-74 18-65 (407)
68 PRK07251 pyridine nucleotide-d 98.7 3.4E-08 7.3E-13 76.9 5.5 41 41-81 3-43 (438)
69 PRK10015 oxidoreductase; Provi 98.7 3.3E-08 7.3E-13 77.0 5.5 34 41-74 5-38 (429)
70 PF03486 HI0933_like: HI0933-l 98.7 2.9E-08 6.2E-13 77.1 5.0 32 42-73 1-32 (409)
71 PRK12409 D-amino acid dehydrog 98.7 3.6E-08 7.8E-13 75.9 5.4 33 42-74 2-34 (410)
72 TIGR03364 HpnW_proposed FAD de 98.7 4.3E-08 9.3E-13 74.3 5.7 33 42-74 1-33 (365)
73 TIGR02032 GG-red-SF geranylger 98.7 3.5E-08 7.6E-13 71.9 4.9 33 42-74 1-33 (295)
74 PRK05249 soluble pyridine nucl 98.7 4E-08 8.7E-13 76.8 5.4 41 40-81 4-44 (461)
75 PRK08013 oxidoreductase; Provi 98.7 3.9E-08 8.5E-13 75.7 5.2 35 41-75 3-37 (400)
76 PF12831 FAD_oxidored: FAD dep 98.7 3.6E-08 7.8E-13 76.8 5.1 39 43-82 1-39 (428)
77 PRK11728 hydroxyglutarate oxid 98.7 5.4E-08 1.2E-12 74.7 6.0 33 42-74 3-37 (393)
78 TIGR02023 BchP-ChlP geranylger 98.7 3.5E-08 7.5E-13 75.7 4.9 32 42-73 1-32 (388)
79 TIGR01988 Ubi-OHases Ubiquinon 98.6 3.4E-08 7.4E-13 74.8 4.7 32 43-74 1-32 (385)
80 PRK09126 hypothetical protein; 98.6 4.2E-08 9E-13 74.9 5.2 34 41-74 3-36 (392)
81 PRK12266 glpD glycerol-3-phosp 98.6 7E-08 1.5E-12 76.7 6.4 34 40-73 5-38 (508)
82 PRK07494 2-octaprenyl-6-methox 98.6 4.4E-08 9.6E-13 74.7 5.1 34 41-74 7-40 (388)
83 PRK06567 putative bifunctional 98.6 8.3E-08 1.8E-12 80.9 6.9 36 38-73 380-415 (1028)
84 PRK06481 fumarate reductase fl 98.6 7.7E-08 1.7E-12 76.4 6.4 40 39-79 59-98 (506)
85 PLN00093 geranylgeranyl diphos 98.6 6.3E-08 1.4E-12 76.0 5.8 35 39-73 37-71 (450)
86 PRK07236 hypothetical protein; 98.6 5.2E-08 1.1E-12 74.6 5.2 35 40-74 5-39 (386)
87 PRK07045 putative monooxygenas 98.6 4.8E-08 1E-12 74.7 4.9 34 41-74 5-38 (388)
88 PRK08773 2-octaprenyl-3-methyl 98.6 5.8E-08 1.3E-12 74.3 5.2 35 40-74 5-39 (392)
89 PRK08849 2-octaprenyl-3-methyl 98.6 5.5E-08 1.2E-12 74.4 5.1 34 41-74 3-36 (384)
90 PRK11101 glpA sn-glycerol-3-ph 98.6 8.5E-08 1.8E-12 76.9 6.3 33 41-73 6-38 (546)
91 TIGR01292 TRX_reduct thioredox 98.6 6.7E-08 1.5E-12 70.8 5.3 38 42-81 1-38 (300)
92 PRK08163 salicylate hydroxylas 98.6 6.2E-08 1.3E-12 74.1 5.2 34 41-74 4-37 (396)
93 PRK06115 dihydrolipoamide dehy 98.6 6.2E-08 1.4E-12 76.2 5.3 40 41-81 3-42 (466)
94 PRK07608 ubiquinone biosynthes 98.6 6.6E-08 1.4E-12 73.6 5.2 35 41-75 5-39 (388)
95 PF00743 FMO-like: Flavin-bind 98.6 6.3E-08 1.4E-12 77.4 5.3 40 42-82 2-41 (531)
96 PF13738 Pyr_redox_3: Pyridine 98.6 6.3E-08 1.4E-12 67.5 4.6 37 45-82 1-38 (203)
97 PRK06753 hypothetical protein; 98.6 6.1E-08 1.3E-12 73.5 4.8 33 43-75 2-34 (373)
98 PF01593 Amino_oxidase: Flavin 98.6 1.7E-07 3.7E-12 70.7 7.2 64 51-115 1-64 (450)
99 PRK05714 2-octaprenyl-3-methyl 98.6 5.5E-08 1.2E-12 74.8 4.5 34 41-74 2-35 (405)
100 TIGR02360 pbenz_hydroxyl 4-hyd 98.6 6.8E-08 1.5E-12 74.2 5.0 34 41-74 2-35 (390)
101 PTZ00363 rab-GDP dissociation 98.6 6.5E-08 1.4E-12 75.9 4.9 45 40-85 3-47 (443)
102 PRK13369 glycerol-3-phosphate 98.6 1E-07 2.2E-12 75.6 6.1 35 39-73 4-38 (502)
103 TIGR01320 mal_quin_oxido malat 98.6 2E-07 4.4E-12 73.8 7.7 32 42-73 1-34 (483)
104 TIGR01421 gluta_reduc_1 glutat 98.6 7.7E-08 1.7E-12 75.4 5.3 39 41-81 2-40 (450)
105 PRK05732 2-octaprenyl-6-methox 98.6 6.8E-08 1.5E-12 73.7 4.9 34 40-73 2-38 (395)
106 PRK06847 hypothetical protein; 98.6 8.2E-08 1.8E-12 72.8 5.3 34 41-74 4-37 (375)
107 PF00890 FAD_binding_2: FAD bi 98.6 8.1E-08 1.8E-12 74.0 5.1 33 43-75 1-33 (417)
108 KOG1399 Flavin-containing mono 98.6 8.5E-08 1.8E-12 75.2 5.1 44 40-84 5-48 (448)
109 PRK08020 ubiF 2-octaprenyl-3-m 98.6 6.6E-08 1.4E-12 73.8 4.5 35 40-74 4-38 (391)
110 TIGR01424 gluta_reduc_2 glutat 98.6 8.5E-08 1.8E-12 74.9 5.1 40 41-82 2-41 (446)
111 PRK06185 hypothetical protein; 98.6 9.4E-08 2E-12 73.4 5.3 34 40-73 5-38 (407)
112 PRK06184 hypothetical protein; 98.6 9.8E-08 2.1E-12 75.5 5.4 34 41-74 3-36 (502)
113 TIGR01984 UbiH 2-polyprenyl-6- 98.6 7.4E-08 1.6E-12 73.2 4.6 32 43-74 1-33 (382)
114 PRK06116 glutathione reductase 98.6 9.1E-08 2E-12 74.7 5.1 39 41-81 4-42 (450)
115 PRK06370 mercuric reductase; V 98.6 1.2E-07 2.6E-12 74.3 5.6 40 40-81 4-43 (463)
116 PRK07588 hypothetical protein; 98.6 9.6E-08 2.1E-12 73.1 5.0 34 42-75 1-34 (391)
117 PLN02852 ferredoxin-NADP+ redu 98.6 1.5E-07 3.3E-12 74.6 6.2 44 38-82 23-68 (491)
118 COG0654 UbiH 2-polyprenyl-6-me 98.6 9.4E-08 2E-12 73.4 4.9 33 41-73 2-34 (387)
119 PRK08850 2-octaprenyl-6-methox 98.6 1E-07 2.2E-12 73.4 4.9 33 41-73 4-36 (405)
120 PRK06416 dihydrolipoamide dehy 98.5 1.2E-07 2.7E-12 74.2 5.4 42 40-83 3-44 (462)
121 TIGR01350 lipoamide_DH dihydro 98.5 1.4E-07 3E-12 73.8 5.6 40 42-83 2-41 (461)
122 PTZ00058 glutathione reductase 98.5 1.9E-07 4E-12 75.2 6.5 48 34-83 41-88 (561)
123 PRK08274 tricarballylate dehyd 98.5 1.5E-07 3.3E-12 73.8 5.8 34 41-74 4-37 (466)
124 PRK07121 hypothetical protein; 98.5 2.1E-07 4.5E-12 73.6 6.5 39 40-79 19-57 (492)
125 TIGR01790 carotene-cycl lycope 98.5 1.4E-07 3E-12 72.0 5.3 33 43-75 1-33 (388)
126 PLN02464 glycerol-3-phosphate 98.5 1.3E-07 2.8E-12 77.0 5.3 34 40-73 70-103 (627)
127 PRK08244 hypothetical protein; 98.5 1.3E-07 2.9E-12 74.6 5.2 34 41-74 2-35 (493)
128 TIGR02028 ChlP geranylgeranyl 98.5 1.2E-07 2.6E-12 73.2 4.8 32 42-73 1-32 (398)
129 PRK05976 dihydrolipoamide dehy 98.5 1.6E-07 3.4E-12 73.9 5.5 42 40-83 3-44 (472)
130 PRK08243 4-hydroxybenzoate 3-m 98.5 1.3E-07 2.9E-12 72.5 4.9 34 41-74 2-35 (392)
131 PRK06126 hypothetical protein; 98.5 1.5E-07 3.3E-12 75.1 5.5 35 40-74 6-40 (545)
132 PRK06475 salicylate hydroxylas 98.5 1.5E-07 3.2E-12 72.4 5.2 33 42-74 3-35 (400)
133 PRK06183 mhpA 3-(3-hydroxyphen 98.5 2.2E-07 4.7E-12 74.2 6.1 36 39-74 8-43 (538)
134 PLN02985 squalene monooxygenas 98.5 1.8E-07 3.9E-12 74.6 5.6 36 38-73 40-75 (514)
135 TIGR01813 flavo_cyto_c flavocy 98.5 1.7E-07 3.7E-12 72.9 5.3 36 43-79 1-37 (439)
136 PRK06467 dihydrolipoamide dehy 98.5 1.9E-07 4E-12 73.6 5.6 40 41-81 4-43 (471)
137 PRK05868 hypothetical protein; 98.5 1.5E-07 3.3E-12 71.9 4.9 34 42-75 2-35 (372)
138 COG2072 TrkA Predicted flavopr 98.5 2.1E-07 4.5E-12 73.0 5.7 43 38-81 5-48 (443)
139 PRK06617 2-octaprenyl-6-methox 98.5 1.3E-07 2.7E-12 72.3 4.4 32 42-73 2-33 (374)
140 PRK00711 D-amino acid dehydrog 98.5 1.6E-07 3.5E-12 72.2 5.0 31 43-73 2-32 (416)
141 PRK07538 hypothetical protein; 98.5 1.5E-07 3.3E-12 72.7 4.8 32 43-74 2-33 (413)
142 PRK10262 thioredoxin reductase 98.5 2.3E-07 5E-12 69.4 5.6 41 39-81 4-44 (321)
143 PLN02463 lycopene beta cyclase 98.5 2E-07 4.4E-12 73.2 5.5 37 38-74 25-61 (447)
144 PRK06292 dihydrolipoamide dehy 98.5 2.2E-07 4.9E-12 72.6 5.5 40 40-81 2-41 (460)
145 PRK07818 dihydrolipoamide dehy 98.5 2.4E-07 5.3E-12 72.7 5.7 40 41-82 4-43 (466)
146 PRK05257 malate:quinone oxidor 98.5 7E-07 1.5E-11 71.0 8.2 34 40-73 4-39 (494)
147 PRK07333 2-octaprenyl-6-methox 98.5 1.8E-07 3.8E-12 71.6 4.7 33 42-74 2-36 (403)
148 TIGR02053 MerA mercuric reduct 98.5 2.4E-07 5.3E-12 72.6 5.4 38 42-81 1-38 (463)
149 TIGR03143 AhpF_homolog putativ 98.5 2.6E-07 5.5E-12 74.2 5.6 39 41-81 4-42 (555)
150 PRK08132 FAD-dependent oxidore 98.5 2.7E-07 5.9E-12 73.8 5.6 36 39-74 21-56 (547)
151 PRK14694 putative mercuric red 98.5 2.8E-07 6.1E-12 72.5 5.6 42 39-82 4-45 (468)
152 PLN02661 Putative thiazole syn 98.5 2.7E-07 5.8E-12 70.4 5.1 36 40-75 91-127 (357)
153 PRK15317 alkyl hydroperoxide r 98.5 8.4E-07 1.8E-11 70.7 8.1 40 39-81 209-248 (517)
154 PLN02976 amine oxidase 98.5 5.8E-07 1.3E-11 78.3 7.5 62 39-102 691-752 (1713)
155 PRK05192 tRNA uridine 5-carbox 98.5 2.8E-07 6.1E-12 74.6 5.4 39 40-78 3-41 (618)
156 PRK05335 tRNA (uracil-5-)-meth 98.5 2.6E-07 5.6E-12 72.0 5.0 32 42-73 3-34 (436)
157 COG0578 GlpA Glycerol-3-phosph 98.5 7E-07 1.5E-11 71.2 7.4 58 40-103 11-68 (532)
158 PRK12770 putative glutamate sy 98.4 1.4E-06 3E-11 66.2 8.7 43 38-81 15-57 (352)
159 TIGR01989 COQ6 Ubiquinone bios 98.4 2E-07 4.4E-12 72.6 4.3 32 42-73 1-36 (437)
160 PRK13984 putative oxidoreducta 98.4 1.8E-06 3.9E-11 69.9 9.8 64 17-81 257-322 (604)
161 PRK06834 hypothetical protein; 98.4 2.9E-07 6.3E-12 72.9 5.2 34 41-74 3-36 (488)
162 PLN02927 antheraxanthin epoxid 98.4 3.1E-07 6.7E-12 75.1 5.3 36 39-74 79-114 (668)
163 PF00732 GMC_oxred_N: GMC oxid 98.4 2.1E-07 4.5E-12 68.6 3.9 34 42-75 1-35 (296)
164 PRK12837 3-ketosteroid-delta-1 98.4 3.6E-07 7.8E-12 72.8 5.5 38 40-79 6-43 (513)
165 PRK07190 hypothetical protein; 98.4 3.3E-07 7.2E-12 72.6 5.2 34 41-74 5-38 (487)
166 COG1148 HdrA Heterodisulfide r 98.4 3.1E-07 6.8E-12 72.2 4.8 41 41-82 124-164 (622)
167 KOG2614 Kynurenine 3-monooxyge 98.4 4.2E-07 9E-12 70.0 5.4 35 41-75 2-36 (420)
168 TIGR03219 salicylate_mono sali 98.4 3.3E-07 7.1E-12 70.8 4.8 33 43-75 2-35 (414)
169 PTZ00367 squalene epoxidase; P 98.4 4.1E-07 9E-12 73.3 5.3 35 40-74 32-66 (567)
170 PRK13748 putative mercuric red 98.4 4.3E-07 9.4E-12 72.7 5.3 40 40-81 97-136 (561)
171 PRK12842 putative succinate de 98.4 5.2E-07 1.1E-11 72.7 5.7 40 40-80 8-47 (574)
172 PF00070 Pyr_redox: Pyridine n 98.4 7.6E-07 1.6E-11 53.8 5.1 31 43-73 1-31 (80)
173 TIGR01789 lycopene_cycl lycope 98.4 5.4E-07 1.2E-11 69.1 5.5 32 43-74 1-34 (370)
174 PRK12834 putative FAD-binding 98.4 5.4E-07 1.2E-11 72.3 5.7 41 40-80 3-44 (549)
175 PRK07573 sdhA succinate dehydr 98.4 4E-07 8.6E-12 74.3 5.0 34 40-73 34-67 (640)
176 PRK11445 putative oxidoreducta 98.4 4.2E-07 9E-12 69.0 4.5 32 42-74 2-33 (351)
177 PRK13339 malate:quinone oxidor 98.4 2.1E-06 4.6E-11 68.3 8.6 35 39-73 4-40 (497)
178 PF07992 Pyr_redox_2: Pyridine 98.4 5.5E-07 1.2E-11 62.4 4.7 31 43-73 1-31 (201)
179 PLN02697 lycopene epsilon cycl 98.4 6.2E-07 1.3E-11 71.8 5.5 35 39-73 106-140 (529)
180 TIGR00137 gid_trmFO tRNA:m(5)U 98.4 5E-07 1.1E-11 70.6 4.9 32 43-74 2-33 (433)
181 PRK08641 sdhA succinate dehydr 98.4 7E-07 1.5E-11 72.3 5.7 34 41-74 3-36 (589)
182 PF05834 Lycopene_cycl: Lycope 98.4 4.6E-07 1E-11 69.4 4.3 33 43-75 1-35 (374)
183 PRK14727 putative mercuric red 98.4 7.1E-07 1.5E-11 70.4 5.3 43 40-83 15-57 (479)
184 PRK06327 dihydrolipoamide dehy 98.3 7.9E-07 1.7E-11 70.1 5.5 32 41-72 4-35 (475)
185 PRK12839 hypothetical protein; 98.3 1E-06 2.3E-11 71.1 6.2 43 37-80 4-46 (572)
186 TIGR01372 soxA sarcosine oxida 98.3 7.2E-07 1.6E-11 76.0 5.5 41 41-82 163-203 (985)
187 PLN02507 glutathione reductase 98.3 8.9E-07 1.9E-11 70.4 5.7 34 39-72 23-56 (499)
188 PRK07804 L-aspartate oxidase; 98.3 1E-06 2.2E-11 70.6 6.1 37 39-75 14-50 (541)
189 TIGR03140 AhpF alkyl hydropero 98.3 9E-07 2E-11 70.5 5.7 40 39-81 210-249 (515)
190 PRK12835 3-ketosteroid-delta-1 98.3 8.8E-07 1.9E-11 71.6 5.7 39 40-79 10-48 (584)
191 COG0492 TrxB Thioredoxin reduc 98.3 8.1E-07 1.8E-11 66.6 5.0 40 40-81 2-42 (305)
192 PTZ00188 adrenodoxin reductase 98.3 1.2E-06 2.5E-11 69.5 6.0 44 39-83 37-81 (506)
193 PRK08294 phenol 2-monooxygenas 98.3 1.1E-06 2.3E-11 71.8 5.8 36 39-74 30-66 (634)
194 PTZ00383 malate:quinone oxidor 98.3 2.2E-06 4.7E-11 68.2 7.3 34 40-73 44-79 (497)
195 TIGR01812 sdhA_frdA_Gneg succi 98.3 9.4E-07 2E-11 71.0 5.3 32 43-74 1-32 (566)
196 PRK09078 sdhA succinate dehydr 98.3 1.2E-06 2.6E-11 71.0 5.9 35 40-74 11-45 (598)
197 PRK12844 3-ketosteroid-delta-1 98.3 1.2E-06 2.5E-11 70.5 5.7 39 41-80 6-44 (557)
198 PTZ00139 Succinate dehydrogena 98.3 1.3E-06 2.8E-11 71.1 5.6 36 40-75 28-63 (617)
199 PLN00128 Succinate dehydrogena 98.3 1.2E-06 2.7E-11 71.5 5.5 35 40-74 49-83 (635)
200 PRK07843 3-ketosteroid-delta-1 98.3 1.4E-06 3.1E-11 70.0 5.8 38 41-79 7-44 (557)
201 PRK06452 sdhA succinate dehydr 98.3 1.3E-06 2.8E-11 70.5 5.5 34 41-74 5-38 (566)
202 PRK08401 L-aspartate oxidase; 98.3 1.1E-06 2.3E-11 69.3 4.7 32 42-73 2-33 (466)
203 PRK07057 sdhA succinate dehydr 98.3 1.5E-06 3.3E-11 70.3 5.7 34 40-73 11-44 (591)
204 KOG2415 Electron transfer flav 98.3 1.3E-06 2.9E-11 67.8 5.1 43 40-83 75-123 (621)
205 PRK06263 sdhA succinate dehydr 98.3 1.3E-06 2.8E-11 70.0 5.3 38 41-79 7-44 (543)
206 PRK08958 sdhA succinate dehydr 98.3 1.5E-06 3.4E-11 70.3 5.7 35 41-75 7-41 (588)
207 PRK07803 sdhA succinate dehydr 98.3 1.4E-06 3E-11 71.1 5.4 34 41-74 8-41 (626)
208 PRK12845 3-ketosteroid-delta-1 98.3 1.9E-06 4.1E-11 69.5 5.8 41 38-80 13-53 (564)
209 PRK02106 choline dehydrogenase 98.2 1.4E-06 3.1E-11 69.9 4.9 34 41-74 5-39 (560)
210 PTZ00153 lipoamide dehydrogena 98.2 1.8E-06 4E-11 70.7 5.5 43 41-83 116-158 (659)
211 PRK06996 hypothetical protein; 98.2 1.4E-06 3.1E-11 67.0 4.6 34 40-73 10-47 (398)
212 PRK06854 adenylylsulfate reduc 98.2 1.7E-06 3.6E-11 70.3 5.2 35 41-75 11-47 (608)
213 PRK07395 L-aspartate oxidase; 98.2 2.1E-06 4.6E-11 69.1 5.6 37 38-75 6-42 (553)
214 KOG1298 Squalene monooxygenase 98.2 1.5E-06 3.3E-11 66.8 4.4 35 39-73 43-77 (509)
215 PTZ00052 thioredoxin reductase 98.2 1.6E-06 3.4E-11 68.9 4.7 32 41-72 5-36 (499)
216 PLN02546 glutathione reductase 98.2 2.1E-06 4.6E-11 69.2 5.5 33 40-72 78-110 (558)
217 PTZ00306 NADH-dependent fumara 98.2 2.3E-06 5E-11 74.0 6.0 41 39-80 407-447 (1167)
218 PRK06134 putative FAD-binding 98.2 3.2E-06 7E-11 68.3 6.4 42 38-80 9-50 (581)
219 PRK08275 putative oxidoreducta 98.2 2E-06 4.3E-11 69.1 5.1 36 40-75 8-45 (554)
220 PRK08626 fumarate reductase fl 98.2 2.1E-06 4.6E-11 70.3 5.3 35 41-75 5-39 (657)
221 TIGR01423 trypano_reduc trypan 98.2 2.6E-06 5.5E-11 67.6 5.5 33 40-72 2-35 (486)
222 PLN02815 L-aspartate oxidase 98.2 3.1E-06 6.6E-11 68.7 5.8 36 39-75 27-62 (594)
223 PRK06069 sdhA succinate dehydr 98.2 2.6E-06 5.6E-11 68.8 5.2 34 41-74 5-41 (577)
224 PF01134 GIDA: Glucose inhibit 98.2 2E-06 4.3E-11 66.4 4.3 29 43-71 1-29 (392)
225 PRK06912 acoL dihydrolipoamide 98.2 2.8E-06 6.1E-11 66.6 5.2 37 43-81 2-38 (458)
226 PRK05945 sdhA succinate dehydr 98.2 3.1E-06 6.8E-11 68.3 5.3 34 41-74 3-38 (575)
227 TIGR00275 flavoprotein, HI0933 98.2 1.8E-06 3.9E-11 66.8 3.7 34 45-79 1-34 (400)
228 TIGR00551 nadB L-aspartate oxi 98.2 3.6E-06 7.8E-11 66.6 5.3 34 41-75 2-35 (488)
229 PRK06175 L-aspartate oxidase; 98.2 3.2E-06 6.8E-11 66.1 5.0 34 41-75 4-37 (433)
230 PRK12843 putative FAD-binding 98.2 5.6E-06 1.2E-10 66.9 6.5 41 40-81 15-55 (578)
231 PRK05329 anaerobic glycerol-3- 98.1 3.5E-06 7.6E-11 65.8 5.0 33 41-73 2-34 (422)
232 TIGR01438 TGR thioredoxin and 98.1 3.8E-06 8.3E-11 66.5 5.2 33 41-73 2-34 (484)
233 COG1249 Lpd Pyruvate/2-oxoglut 98.1 4.4E-06 9.5E-11 65.8 5.4 44 40-84 3-46 (454)
234 PRK09231 fumarate reductase fl 98.1 4.5E-06 9.8E-11 67.5 5.2 34 41-74 4-39 (582)
235 PRK08255 salicylyl-CoA 5-hydro 98.1 3.6E-06 7.8E-11 70.0 4.6 32 43-74 2-35 (765)
236 PRK08071 L-aspartate oxidase; 98.1 5.1E-06 1.1E-10 66.2 5.3 34 41-75 3-36 (510)
237 TIGR02061 aprA adenosine phosp 98.1 5.1E-06 1.1E-10 67.6 5.2 32 43-74 1-36 (614)
238 COG0579 Predicted dehydrogenas 98.1 5.6E-06 1.2E-10 64.7 5.2 34 40-73 2-37 (429)
239 PRK07845 flavoprotein disulfid 98.1 6.1E-06 1.3E-10 65.0 5.3 38 42-81 2-39 (466)
240 PRK13800 putative oxidoreducta 98.1 5.6E-06 1.2E-10 70.0 5.4 36 40-75 12-47 (897)
241 TIGR02462 pyranose_ox pyranose 98.1 6.6E-06 1.4E-10 66.1 5.3 33 42-74 1-33 (544)
242 COG3075 GlpB Anaerobic glycero 98.1 5.8E-06 1.3E-10 62.5 4.6 33 41-73 2-34 (421)
243 TIGR01176 fum_red_Fp fumarate 98.1 6.6E-06 1.4E-10 66.6 5.3 34 41-74 3-38 (580)
244 PRK09897 hypothetical protein; 98.0 1.3E-05 2.8E-10 64.3 6.6 32 42-73 2-35 (534)
245 TIGR01810 betA choline dehydro 98.0 4.8E-06 1E-10 66.5 3.9 32 43-74 1-33 (532)
246 PRK09077 L-aspartate oxidase; 98.0 9.2E-06 2E-10 65.1 5.4 34 40-74 7-40 (536)
247 PRK08205 sdhA succinate dehydr 98.0 8.5E-06 1.8E-10 65.9 5.2 33 41-74 5-37 (583)
248 TIGR01811 sdhA_Bsu succinate d 98.0 8.4E-06 1.8E-10 66.3 4.8 31 44-74 1-31 (603)
249 COG1053 SdhA Succinate dehydro 98.0 1.1E-05 2.5E-10 65.0 5.5 36 40-75 5-40 (562)
250 KOG2820 FAD-dependent oxidored 98.0 9.3E-06 2E-10 61.5 4.5 35 39-73 5-39 (399)
251 PRK07512 L-aspartate oxidase; 98.0 1.1E-05 2.5E-10 64.3 5.0 35 39-75 7-41 (513)
252 COG3573 Predicted oxidoreducta 98.0 1.5E-05 3.2E-10 60.8 5.3 42 40-81 4-46 (552)
253 KOG2852 Possible oxidoreductas 98.0 3.6E-06 7.7E-11 62.7 2.0 33 41-73 10-48 (380)
254 PTZ00318 NADH dehydrogenase-li 98.0 1.3E-05 2.9E-10 62.3 5.2 39 37-75 6-44 (424)
255 PRK09754 phenylpropionate diox 98.0 1.5E-05 3.3E-10 61.4 5.3 36 40-75 2-39 (396)
256 COG2303 BetA Choline dehydroge 97.9 1.1E-05 2.3E-10 64.9 4.5 36 39-74 5-40 (542)
257 TIGR03467 HpnE squalene-associ 97.9 2.1E-05 4.6E-10 60.1 5.6 59 55-114 1-59 (419)
258 PF13454 NAD_binding_9: FAD-NA 97.9 2.1E-05 4.5E-10 53.4 4.6 37 45-81 1-42 (156)
259 PRK09564 coenzyme A disulfide 97.9 2.3E-05 4.9E-10 61.0 4.8 33 43-75 2-36 (444)
260 TIGR00136 gidA glucose-inhibit 97.9 2.7E-05 5.8E-10 63.3 5.3 32 42-73 1-32 (617)
261 PF04820 Trp_halogenase: Trypt 97.9 2.1E-05 4.5E-10 62.0 4.6 31 43-73 1-34 (454)
262 TIGR03378 glycerol3P_GlpB glyc 97.9 2.4E-05 5.3E-10 61.0 4.8 32 42-73 1-32 (419)
263 PLN02785 Protein HOTHEAD 97.8 2.9E-05 6.4E-10 63.0 4.7 34 40-74 54-87 (587)
264 PRK13512 coenzyme A disulfide 97.8 3.3E-05 7.2E-10 60.4 4.9 33 42-74 2-36 (438)
265 COG1252 Ndh NADH dehydrogenase 97.8 5.8E-05 1.3E-09 58.7 5.7 37 41-77 3-41 (405)
266 TIGR02485 CobZ_N-term precorri 97.8 3.1E-05 6.6E-10 60.3 4.1 30 46-75 1-30 (432)
267 PRK07846 mycothione reductase; 97.8 4.5E-05 9.8E-10 59.9 4.9 36 42-81 2-37 (451)
268 KOG1335 Dihydrolipoamide dehyd 97.7 4.1E-05 8.8E-10 59.1 4.4 41 40-81 38-78 (506)
269 COG1206 Gid NAD(FAD)-utilizing 97.7 3.9E-05 8.5E-10 58.2 3.8 34 42-75 4-37 (439)
270 TIGR03452 mycothione_red mycot 97.7 6.1E-05 1.3E-09 59.2 4.9 39 41-83 2-40 (452)
271 COG0446 HcaD Uncharacterized N 97.7 6.8E-05 1.5E-09 57.0 5.0 39 41-80 136-174 (415)
272 KOG4254 Phytoene desaturase [C 97.6 6.4E-05 1.4E-09 59.0 4.1 42 39-81 12-53 (561)
273 COG4529 Uncharacterized protei 97.6 0.00025 5.5E-09 55.8 6.6 40 42-81 2-44 (474)
274 KOG2853 Possible oxidoreductas 97.5 0.00034 7.3E-09 53.6 6.8 34 40-73 85-122 (509)
275 PF06100 Strep_67kDa_ant: Stre 97.5 0.0004 8.8E-09 55.1 6.9 46 41-87 2-51 (500)
276 PRK01438 murD UDP-N-acetylmura 97.5 0.00022 4.8E-09 56.3 5.5 35 39-73 14-48 (480)
277 COG0445 GidA Flavin-dependent 97.5 0.0001 2.3E-09 59.0 3.5 33 41-73 4-36 (621)
278 PRK09754 phenylpropionate diox 97.5 0.00022 4.8E-09 55.0 5.1 34 41-74 144-177 (396)
279 TIGR03169 Nterm_to_SelD pyridi 97.5 0.00015 3.2E-09 55.1 4.0 33 43-75 1-36 (364)
280 KOG1800 Ferredoxin/adrenodoxin 97.5 0.00022 4.7E-09 55.0 4.9 41 39-80 18-60 (468)
281 PRK05866 short chain dehydroge 97.4 0.00051 1.1E-08 50.9 6.5 72 1-73 1-73 (293)
282 PF01210 NAD_Gly3P_dh_N: NAD-d 97.4 0.00022 4.7E-09 48.4 3.9 31 43-73 1-31 (157)
283 KOG0042 Glycerol-3-phosphate d 97.4 0.00011 2.5E-09 58.7 2.6 39 40-78 66-104 (680)
284 PRK04965 NADH:flavorubredoxin 97.4 0.00037 7.9E-09 53.3 5.1 33 42-74 3-37 (377)
285 PRK05976 dihydrolipoamide dehy 97.4 0.00034 7.5E-09 55.1 5.0 34 41-74 180-213 (472)
286 PRK07251 pyridine nucleotide-d 97.4 0.00043 9.3E-09 54.0 5.5 34 41-74 157-190 (438)
287 PRK04965 NADH:flavorubredoxin 97.3 0.0004 8.7E-09 53.1 5.1 34 41-74 141-174 (377)
288 PF02737 3HCDH_N: 3-hydroxyacy 97.3 0.0004 8.6E-09 48.3 4.5 31 43-73 1-31 (180)
289 KOG1238 Glucose dehydrogenase/ 97.3 0.00026 5.6E-09 57.5 4.0 38 38-75 54-92 (623)
290 PF00996 GDI: GDP dissociation 97.3 0.00045 9.7E-09 54.3 5.2 47 39-86 2-48 (438)
291 COG0029 NadB Aspartate oxidase 97.3 0.00023 5E-09 56.4 3.3 32 43-75 9-40 (518)
292 COG1249 Lpd Pyruvate/2-oxoglut 97.3 0.00047 1E-08 54.5 5.1 36 40-75 172-207 (454)
293 KOG2844 Dimethylglycine dehydr 97.3 0.00096 2.1E-08 54.8 6.9 36 38-73 36-72 (856)
294 TIGR01421 gluta_reduc_1 glutat 97.3 0.00049 1.1E-08 54.1 5.1 34 41-74 166-199 (450)
295 TIGR01350 lipoamide_DH dihydro 97.3 0.00051 1.1E-08 53.8 5.1 34 41-74 170-203 (461)
296 PF13738 Pyr_redox_3: Pyridine 97.3 0.00045 9.6E-09 47.9 4.3 35 39-73 165-199 (203)
297 PRK06467 dihydrolipoamide dehy 97.3 0.00051 1.1E-08 54.3 5.1 34 41-74 174-207 (471)
298 PRK06115 dihydrolipoamide dehy 97.2 0.00058 1.2E-08 53.9 5.1 34 41-74 174-207 (466)
299 PRK06416 dihydrolipoamide dehy 97.2 0.00059 1.3E-08 53.5 5.1 34 41-74 172-205 (462)
300 KOG2404 Fumarate reductase, fl 97.2 0.00048 1E-08 52.4 4.3 37 43-80 11-47 (477)
301 PF06039 Mqo: Malate:quinone o 97.2 0.002 4.3E-08 51.0 7.8 34 40-73 2-37 (488)
302 TIGR02053 MerA mercuric reduct 97.2 0.00063 1.4E-08 53.4 5.1 34 41-74 166-199 (463)
303 PRK06370 mercuric reductase; V 97.2 0.00063 1.4E-08 53.5 5.1 34 41-74 171-204 (463)
304 PRK05249 soluble pyridine nucl 97.2 0.00064 1.4E-08 53.3 5.0 34 41-74 175-208 (461)
305 KOG4716 Thioredoxin reductase 97.2 0.00043 9.4E-09 52.9 3.8 34 39-72 17-50 (503)
306 KOG2960 Protein involved in th 97.2 6.6E-05 1.4E-09 54.0 -0.5 33 41-73 76-110 (328)
307 PRK07846 mycothione reductase; 97.2 0.0007 1.5E-08 53.2 5.1 34 41-74 166-199 (451)
308 TIGR03385 CoA_CoA_reduc CoA-di 97.2 0.00074 1.6E-08 52.4 5.2 34 41-74 137-170 (427)
309 PRK06912 acoL dihydrolipoamide 97.2 0.00075 1.6E-08 53.0 5.2 34 41-74 170-203 (458)
310 PRK13512 coenzyme A disulfide 97.2 0.00069 1.5E-08 53.0 4.9 34 41-74 148-181 (438)
311 PF03721 UDPG_MGDP_dh_N: UDP-g 97.2 0.00047 1E-08 48.2 3.4 31 43-73 2-32 (185)
312 PRK07818 dihydrolipoamide dehy 97.1 0.00082 1.8E-08 52.9 5.1 33 41-73 172-204 (466)
313 PF02558 ApbA: Ketopantoate re 97.1 0.0011 2.4E-08 44.2 4.9 31 44-74 1-31 (151)
314 PRK06292 dihydrolipoamide dehy 97.1 0.00089 1.9E-08 52.5 5.1 34 41-74 169-202 (460)
315 PRK14989 nitrite reductase sub 97.1 0.0011 2.3E-08 56.2 5.8 36 41-76 3-42 (847)
316 PRK02705 murD UDP-N-acetylmura 97.1 0.00069 1.5E-08 53.1 4.3 31 43-73 2-32 (459)
317 TIGR03452 mycothione_red mycot 97.1 0.00097 2.1E-08 52.4 5.1 34 41-74 169-202 (452)
318 PRK06129 3-hydroxyacyl-CoA deh 97.1 0.0009 1.9E-08 50.1 4.6 32 42-73 3-34 (308)
319 TIGR01470 cysG_Nterm siroheme 97.1 0.0012 2.6E-08 46.9 4.9 35 39-73 7-41 (205)
320 PRK06327 dihydrolipoamide dehy 97.1 0.0011 2.3E-08 52.5 5.1 34 41-74 183-216 (475)
321 PRK14106 murD UDP-N-acetylmura 97.1 0.001 2.2E-08 52.1 4.9 34 40-73 4-37 (450)
322 TIGR01316 gltA glutamate synth 97.1 0.001 2.2E-08 52.3 4.9 34 40-73 271-304 (449)
323 KOG2311 NAD/FAD-utilizing prot 97.1 0.00083 1.8E-08 53.4 4.2 36 38-73 25-60 (679)
324 COG0569 TrkA K+ transport syst 97.1 0.0011 2.4E-08 47.7 4.6 34 42-75 1-34 (225)
325 PF13241 NAD_binding_7: Putati 97.0 0.00078 1.7E-08 42.6 3.3 34 40-73 6-39 (103)
326 PRK06719 precorrin-2 dehydroge 97.0 0.0014 3.1E-08 44.6 4.8 35 39-73 11-45 (157)
327 KOG2665 Predicted FAD-dependen 97.0 0.00064 1.4E-08 51.6 3.2 35 39-73 46-82 (453)
328 PRK09260 3-hydroxybutyryl-CoA 97.0 0.0013 2.8E-08 48.8 4.7 32 42-73 2-33 (288)
329 TIGR02374 nitri_red_nirB nitri 97.0 0.0011 2.5E-08 55.5 4.9 34 41-74 140-173 (785)
330 TIGR03140 AhpF alkyl hydropero 97.0 0.0013 2.7E-08 52.6 4.9 34 40-73 351-384 (515)
331 PRK10262 thioredoxin reductase 97.0 0.0014 3E-08 49.0 4.9 35 40-74 145-179 (321)
332 PRK07845 flavoprotein disulfid 97.0 0.0014 3.1E-08 51.7 5.1 34 41-74 177-210 (466)
333 PRK07066 3-hydroxybutyryl-CoA 97.0 0.0018 3.8E-08 49.1 5.4 33 41-73 7-39 (321)
334 PRK06718 precorrin-2 dehydroge 97.0 0.0017 3.6E-08 46.1 4.9 35 39-73 8-42 (202)
335 KOG0405 Pyridine nucleotide-di 97.0 0.002 4.3E-08 49.5 5.5 46 39-85 18-63 (478)
336 PRK12831 putative oxidoreducta 97.0 0.0013 2.8E-08 52.0 4.8 34 40-73 280-313 (464)
337 PRK08293 3-hydroxybutyryl-CoA 97.0 0.0015 3.2E-08 48.4 4.7 32 42-73 4-35 (287)
338 PRK09564 coenzyme A disulfide 96.9 0.0016 3.4E-08 50.7 5.0 34 41-74 149-182 (444)
339 PRK06116 glutathione reductase 96.9 0.0016 3.5E-08 50.9 5.1 34 41-74 167-200 (450)
340 PRK13748 putative mercuric red 96.9 0.0014 3E-08 52.7 4.8 33 41-73 270-302 (561)
341 COG3634 AhpF Alkyl hydroperoxi 96.9 0.00052 1.1E-08 52.7 2.2 33 39-71 209-241 (520)
342 PTZ00058 glutathione reductase 96.9 0.0015 3.2E-08 53.0 4.8 34 41-74 237-270 (561)
343 TIGR01424 gluta_reduc_2 glutat 96.9 0.0017 3.7E-08 50.9 5.1 34 41-74 166-199 (446)
344 PRK14989 nitrite reductase sub 96.9 0.0015 3.4E-08 55.2 5.0 34 41-74 145-178 (847)
345 TIGR03143 AhpF_homolog putativ 96.9 0.0015 3.3E-08 52.7 4.8 35 40-74 142-176 (555)
346 PRK08010 pyridine nucleotide-d 96.9 0.0019 4.1E-08 50.4 5.1 34 41-74 158-191 (441)
347 PRK07819 3-hydroxybutyryl-CoA 96.9 0.0017 3.6E-08 48.3 4.6 34 42-75 6-39 (286)
348 PRK14727 putative mercuric red 96.9 0.0018 3.8E-08 51.3 4.9 33 41-73 188-220 (479)
349 TIGR01438 TGR thioredoxin and 96.9 0.0018 3.8E-08 51.5 4.9 33 41-73 180-212 (484)
350 PTZ00153 lipoamide dehydrogena 96.9 0.0018 4E-08 53.4 5.1 34 41-74 312-345 (659)
351 KOG3855 Monooxygenase involved 96.9 0.0015 3.3E-08 50.9 4.3 35 39-73 34-72 (481)
352 PRK06249 2-dehydropantoate 2-r 96.9 0.0022 4.7E-08 48.1 5.1 33 42-74 6-38 (313)
353 PTZ00052 thioredoxin reductase 96.9 0.0018 3.8E-08 51.7 4.8 33 41-73 182-214 (499)
354 PLN02507 glutathione reductase 96.9 0.0019 4.1E-08 51.5 4.9 34 41-74 203-236 (499)
355 PRK14694 putative mercuric red 96.9 0.002 4.2E-08 50.9 4.9 33 41-73 178-210 (468)
356 PRK07530 3-hydroxybutyryl-CoA 96.8 0.0024 5.1E-08 47.4 5.1 32 42-73 5-36 (292)
357 PRK15317 alkyl hydroperoxide r 96.8 0.002 4.4E-08 51.5 4.9 35 40-74 350-384 (517)
358 TIGR02374 nitri_red_nirB nitri 96.8 0.002 4.3E-08 54.1 4.9 32 44-75 1-35 (785)
359 PRK12770 putative glutamate sy 96.8 0.0024 5.3E-08 48.4 4.9 33 41-73 172-205 (352)
360 PRK06035 3-hydroxyacyl-CoA deh 96.8 0.0024 5.1E-08 47.4 4.7 33 42-74 4-36 (291)
361 TIGR01292 TRX_reduct thioredox 96.8 0.0026 5.7E-08 46.4 4.8 35 40-74 140-174 (300)
362 PRK12921 2-dehydropantoate 2-r 96.8 0.0023 5E-08 47.4 4.5 30 43-72 2-31 (305)
363 PRK06522 2-dehydropantoate 2-r 96.8 0.0024 5.1E-08 47.2 4.5 31 43-73 2-32 (304)
364 KOG0404 Thioredoxin reductase 96.8 0.0029 6.3E-08 46.0 4.6 44 42-85 9-55 (322)
365 PF00670 AdoHcyase_NAD: S-aden 96.7 0.0026 5.6E-08 43.7 4.1 37 38-74 20-56 (162)
366 PLN02546 glutathione reductase 96.7 0.0029 6.4E-08 51.2 5.1 34 41-74 252-285 (558)
367 PF01262 AlaDh_PNT_C: Alanine 96.7 0.0036 7.8E-08 42.9 4.8 35 39-73 18-52 (168)
368 PF01488 Shikimate_DH: Shikima 96.7 0.0047 1E-07 40.8 5.2 35 39-73 10-45 (135)
369 PRK05708 2-dehydropantoate 2-r 96.7 0.0029 6.4E-08 47.4 4.6 32 42-73 3-34 (305)
370 TIGR02354 thiF_fam2 thiamine b 96.7 0.0037 8E-08 44.2 4.8 35 39-73 19-54 (200)
371 PRK05808 3-hydroxybutyryl-CoA 96.7 0.0035 7.5E-08 46.3 4.7 32 42-73 4-35 (282)
372 PRK04148 hypothetical protein; 96.6 0.0023 5E-08 42.6 3.3 34 41-75 17-50 (134)
373 TIGR01423 trypano_reduc trypan 96.6 0.0036 7.7E-08 49.9 5.0 34 41-74 187-223 (486)
374 PRK11064 wecC UDP-N-acetyl-D-m 96.6 0.0035 7.7E-08 49.0 4.8 32 42-73 4-35 (415)
375 PRK08229 2-dehydropantoate 2-r 96.6 0.0033 7.3E-08 47.4 4.5 32 42-73 3-34 (341)
376 cd00401 AdoHcyase S-adenosyl-L 96.6 0.0044 9.6E-08 48.5 5.2 36 39-74 200-235 (413)
377 PF13434 K_oxygenase: L-lysine 96.6 0.0032 7E-08 48.0 4.1 34 42-75 3-37 (341)
378 PRK11749 dihydropyrimidine deh 96.6 0.0045 9.7E-08 48.7 5.0 34 40-73 272-306 (457)
379 PRK12778 putative bifunctional 96.6 0.0041 8.9E-08 51.9 5.0 34 40-73 569-603 (752)
380 PF00899 ThiF: ThiF family; I 96.5 0.0056 1.2E-07 40.3 4.7 33 41-73 2-35 (135)
381 PRK06130 3-hydroxybutyryl-CoA 96.5 0.0049 1.1E-07 46.0 4.7 32 42-73 5-36 (311)
382 TIGR02437 FadB fatty oxidation 96.5 0.0098 2.1E-07 49.6 6.9 34 40-73 312-345 (714)
383 KOG4405 GDP dissociation inhib 96.5 0.0044 9.6E-08 48.5 4.5 49 38-87 5-53 (547)
384 PF02826 2-Hacid_dh_C: D-isome 96.5 0.013 2.8E-07 40.5 6.5 61 12-73 8-68 (178)
385 PLN02545 3-hydroxybutyryl-CoA 96.5 0.005 1.1E-07 45.7 4.6 32 42-73 5-36 (295)
386 TIGR00518 alaDH alanine dehydr 96.5 0.006 1.3E-07 47.0 5.0 34 40-73 166-199 (370)
387 COG1004 Ugd Predicted UDP-gluc 96.4 0.0048 1E-07 47.9 4.3 31 43-73 2-32 (414)
388 PRK14619 NAD(P)H-dependent gly 96.4 0.0072 1.6E-07 45.3 5.1 33 41-73 4-36 (308)
389 PRK11730 fadB multifunctional 96.4 0.011 2.4E-07 49.3 6.5 33 42-74 314-346 (715)
390 cd01075 NAD_bind_Leu_Phe_Val_D 96.4 0.0096 2.1E-07 42.1 5.3 35 39-73 26-60 (200)
391 COG3634 AhpF Alkyl hydroperoxi 96.3 0.0038 8.3E-08 48.1 3.2 37 37-73 350-386 (520)
392 TIGR03026 NDP-sugDHase nucleot 96.3 0.0056 1.2E-07 47.7 4.2 31 43-73 2-32 (411)
393 TIGR00936 ahcY adenosylhomocys 96.3 0.0078 1.7E-07 47.0 4.8 36 39-74 193-228 (406)
394 TIGR02279 PaaC-3OHAcCoADH 3-hy 96.3 0.0087 1.9E-07 48.0 5.2 33 41-73 5-37 (503)
395 PRK12779 putative bifunctional 96.3 0.007 1.5E-07 51.9 4.9 34 40-73 446-479 (944)
396 PTZ00318 NADH dehydrogenase-li 96.3 0.0074 1.6E-07 47.1 4.6 32 42-73 174-219 (424)
397 COG1252 Ndh NADH dehydrogenase 96.3 0.011 2.4E-07 46.1 5.5 33 42-74 156-201 (405)
398 PRK12475 thiamine/molybdopteri 96.2 0.0092 2E-07 45.5 4.9 35 39-73 22-57 (338)
399 PRK00094 gpsA NAD(P)H-dependen 96.2 0.0086 1.9E-07 44.7 4.6 31 43-73 3-33 (325)
400 PRK02472 murD UDP-N-acetylmura 96.2 0.008 1.7E-07 47.0 4.6 33 41-73 5-37 (447)
401 COG2072 TrkA Predicted flavopr 96.2 0.0089 1.9E-07 47.1 4.9 38 38-75 172-209 (443)
402 TIGR01763 MalateDH_bact malate 96.2 0.009 1.9E-07 44.9 4.7 32 42-73 2-34 (305)
403 cd01080 NAD_bind_m-THF_DH_Cycl 96.2 0.011 2.5E-07 40.7 4.8 35 39-73 42-77 (168)
404 PRK14620 NAD(P)H-dependent gly 96.2 0.0086 1.9E-07 45.0 4.6 31 43-73 2-32 (326)
405 PRK07417 arogenate dehydrogena 96.2 0.0084 1.8E-07 44.3 4.3 31 43-73 2-32 (279)
406 PRK08268 3-hydroxy-acyl-CoA de 96.2 0.0087 1.9E-07 48.0 4.7 33 42-74 8-40 (507)
407 PRK09424 pntA NAD(P) transhydr 96.2 0.01 2.2E-07 47.7 5.0 35 39-73 163-197 (509)
408 PRK14618 NAD(P)H-dependent gly 96.2 0.0095 2.1E-07 44.9 4.6 31 43-73 6-36 (328)
409 PRK15116 sulfur acceptor prote 96.1 0.012 2.7E-07 43.5 5.0 35 39-73 28-63 (268)
410 PRK08306 dipicolinate synthase 96.1 0.012 2.6E-07 44.1 5.0 34 40-73 151-184 (296)
411 TIGR02853 spore_dpaA dipicolin 96.1 0.012 2.5E-07 44.0 4.8 35 39-73 149-183 (287)
412 PF02254 TrkA_N: TrkA-N domain 96.1 0.016 3.4E-07 36.8 4.9 30 44-73 1-30 (116)
413 PRK07688 thiamine/molybdopteri 96.1 0.012 2.7E-07 44.8 5.1 35 39-73 22-57 (339)
414 PRK03369 murD UDP-N-acetylmura 96.1 0.011 2.3E-07 47.2 4.8 34 40-73 11-44 (488)
415 TIGR02441 fa_ox_alpha_mit fatt 96.1 0.019 4.1E-07 48.1 6.4 34 40-73 334-367 (737)
416 PRK04690 murD UDP-N-acetylmura 96.1 0.0096 2.1E-07 47.2 4.5 33 41-73 8-40 (468)
417 PRK07531 bifunctional 3-hydrox 96.1 0.01 2.2E-07 47.4 4.6 32 42-73 5-36 (495)
418 PRK01710 murD UDP-N-acetylmura 96.1 0.01 2.2E-07 46.8 4.6 33 41-73 14-46 (458)
419 PRK05476 S-adenosyl-L-homocyst 96.0 0.012 2.7E-07 46.2 4.8 36 39-74 210-245 (425)
420 cd05292 LDH_2 A subgroup of L- 96.0 0.01 2.2E-07 44.6 4.2 33 43-75 2-36 (308)
421 PF03446 NAD_binding_2: NAD bi 96.0 0.015 3.2E-07 39.6 4.6 32 42-73 2-33 (163)
422 cd05191 NAD_bind_amino_acid_DH 96.0 0.022 4.8E-07 34.6 5.0 34 39-72 21-55 (86)
423 TIGR02356 adenyl_thiF thiazole 96.0 0.017 3.6E-07 40.8 4.9 36 38-73 18-54 (202)
424 PLN02172 flavin-containing mon 96.0 0.0094 2E-07 47.2 3.9 34 40-73 203-236 (461)
425 COG0771 MurD UDP-N-acetylmuram 96.0 0.01 2.2E-07 47.0 4.0 35 41-75 7-41 (448)
426 PRK04308 murD UDP-N-acetylmura 95.9 0.015 3.3E-07 45.5 4.9 33 41-73 5-37 (445)
427 COG1748 LYS9 Saccharopine dehy 95.9 0.014 3E-07 45.4 4.6 32 42-73 2-34 (389)
428 cd01487 E1_ThiF_like E1_ThiF_l 95.9 0.019 4.2E-07 39.6 4.8 31 43-73 1-32 (174)
429 PRK12549 shikimate 5-dehydroge 95.9 0.016 3.6E-07 43.0 4.7 34 40-73 126-160 (284)
430 cd01483 E1_enzyme_family Super 95.9 0.02 4.2E-07 38.0 4.7 31 43-73 1-32 (143)
431 COG4716 Myosin-crossreactive a 95.9 0.013 2.7E-07 45.8 4.1 46 39-85 20-69 (587)
432 PLN02494 adenosylhomocysteinas 95.8 0.018 3.9E-07 45.8 5.0 36 39-74 252-287 (477)
433 PRK00141 murD UDP-N-acetylmura 95.8 0.018 3.8E-07 45.7 4.9 35 39-73 13-47 (473)
434 PRK08644 thiamine biosynthesis 95.8 0.023 5E-07 40.5 5.0 35 39-73 26-61 (212)
435 TIGR01505 tartro_sem_red 2-hyd 95.8 0.015 3.3E-07 43.0 4.2 31 43-73 1-31 (291)
436 cd05311 NAD_bind_2_malic_enz N 95.8 0.02 4.3E-07 41.2 4.8 35 39-73 23-60 (226)
437 PRK05562 precorrin-2 dehydroge 95.7 0.021 4.6E-07 41.1 4.7 35 39-73 23-57 (223)
438 cd01078 NAD_bind_H4MPT_DH NADP 95.7 0.023 5.1E-07 39.5 4.8 34 40-73 27-61 (194)
439 KOG2755 Oxidoreductase [Genera 95.7 0.0087 1.9E-07 44.4 2.6 31 43-73 1-33 (334)
440 PRK11154 fadJ multifunctional 95.7 0.034 7.4E-07 46.4 6.4 33 41-73 309-342 (708)
441 PRK12814 putative NADPH-depend 95.7 0.019 4.1E-07 47.3 4.9 34 40-73 322-356 (652)
442 TIGR02355 moeB molybdopterin s 95.7 0.024 5.3E-07 41.2 4.9 35 39-73 22-57 (240)
443 COG0686 Ald Alanine dehydrogen 95.7 0.025 5.5E-07 42.9 5.0 35 39-73 166-200 (371)
444 PRK00683 murD UDP-N-acetylmura 95.7 0.021 4.5E-07 44.5 4.7 32 42-73 4-35 (418)
445 PRK05690 molybdopterin biosynt 95.6 0.025 5.4E-07 41.2 4.8 35 39-73 30-65 (245)
446 cd00757 ThiF_MoeB_HesA_family 95.6 0.025 5.5E-07 40.6 4.8 35 39-73 19-54 (228)
447 PTZ00082 L-lactate dehydrogena 95.6 0.027 5.9E-07 42.6 5.1 35 41-75 6-41 (321)
448 cd05291 HicDH_like L-2-hydroxy 95.6 0.024 5.2E-07 42.5 4.8 32 43-74 2-35 (306)
449 PTZ00075 Adenosylhomocysteinas 95.6 0.024 5.3E-07 45.1 5.0 36 38-73 251-286 (476)
450 PRK00421 murC UDP-N-acetylmura 95.6 0.019 4.2E-07 45.2 4.5 34 40-73 6-40 (461)
451 PRK15057 UDP-glucose 6-dehydro 95.6 0.02 4.3E-07 44.5 4.4 30 43-73 2-31 (388)
452 cd01065 NAD_bind_Shikimate_DH 95.6 0.031 6.8E-07 37.1 4.9 34 40-73 18-52 (155)
453 TIGR01915 npdG NADPH-dependent 95.6 0.025 5.4E-07 40.3 4.6 32 43-74 2-34 (219)
454 KOG2304 3-hydroxyacyl-CoA dehy 95.6 0.018 3.9E-07 41.9 3.7 36 40-75 10-45 (298)
455 TIGR02964 xanthine_xdhC xanthi 95.6 0.029 6.2E-07 41.0 4.9 36 40-75 99-134 (246)
456 PRK12810 gltD glutamate syntha 95.6 0.021 4.5E-07 45.2 4.5 34 40-73 280-314 (471)
457 COG1250 FadB 3-hydroxyacyl-CoA 95.6 0.019 4.1E-07 43.3 4.0 32 42-73 4-35 (307)
458 TIGR00561 pntA NAD(P) transhyd 95.6 0.026 5.6E-07 45.4 5.0 34 40-73 163-196 (511)
459 TIGR02440 FadJ fatty oxidation 95.6 0.021 4.6E-07 47.5 4.6 34 41-74 304-338 (699)
460 TIGR01317 GOGAT_sm_gam glutama 95.5 0.028 6E-07 44.8 5.0 34 40-73 282-316 (485)
461 PRK06223 malate dehydrogenase; 95.5 0.03 6.5E-07 41.8 4.9 32 42-73 3-35 (307)
462 TIGR00507 aroE shikimate 5-deh 95.5 0.031 6.6E-07 41.1 4.8 34 40-73 116-149 (270)
463 PF13478 XdhC_C: XdhC Rossmann 95.5 0.019 4.2E-07 38.2 3.4 32 44-75 1-32 (136)
464 KOG3923 D-aspartate oxidase [A 95.5 0.015 3.3E-07 43.7 3.1 33 41-73 3-42 (342)
465 KOG3851 Sulfide:quinone oxidor 95.4 0.016 3.5E-07 44.2 3.2 37 39-75 37-75 (446)
466 PF00056 Ldh_1_N: lactate/mala 95.4 0.04 8.7E-07 36.8 4.8 31 43-73 2-35 (141)
467 PRK02006 murD UDP-N-acetylmura 95.4 0.025 5.5E-07 45.0 4.5 33 41-73 7-39 (498)
468 PRK01368 murD UDP-N-acetylmura 95.4 0.021 4.5E-07 45.2 3.9 32 41-73 6-37 (454)
469 PRK08328 hypothetical protein; 95.4 0.035 7.6E-07 40.1 4.8 35 39-73 25-60 (231)
470 PF10727 Rossmann-like: Rossma 95.4 0.009 2E-07 39.4 1.6 81 38-118 7-92 (127)
471 PLN02695 GDP-D-mannose-3',5'-e 95.4 0.034 7.3E-07 42.6 4.9 34 40-73 20-54 (370)
472 KOG2495 NADH-dehydrogenase (ub 95.4 0.023 5E-07 44.7 4.0 38 38-75 52-89 (491)
473 PRK12480 D-lactate dehydrogena 95.4 0.089 1.9E-06 40.0 7.1 35 39-73 144-178 (330)
474 PRK00258 aroE shikimate 5-dehy 95.3 0.038 8.3E-07 40.8 4.9 35 39-73 121-156 (278)
475 COG1893 ApbA Ketopantoate redu 95.3 0.029 6.3E-07 42.3 4.3 31 43-73 2-32 (307)
476 TIGR03736 PRTRC_ThiF PRTRC sys 95.3 0.035 7.6E-07 40.6 4.5 35 39-73 9-54 (244)
477 PLN02353 probable UDP-glucose 95.3 0.03 6.4E-07 44.7 4.5 31 43-73 3-35 (473)
478 PRK11199 tyrA bifunctional cho 95.3 0.048 1.1E-06 42.1 5.6 34 40-73 97-131 (374)
479 PRK09496 trkA potassium transp 95.3 0.033 7.1E-07 43.5 4.6 31 43-73 2-32 (453)
480 PRK05717 oxidoreductase; Valid 95.3 0.054 1.2E-06 38.8 5.5 35 39-73 8-43 (255)
481 PRK15461 NADH-dependent gamma- 95.3 0.032 7E-07 41.6 4.4 31 43-73 3-33 (296)
482 cd01492 Aos1_SUMO Ubiquitin ac 95.3 0.041 8.8E-07 38.8 4.7 35 39-73 19-54 (197)
483 PRK09496 trkA potassium transp 95.2 0.04 8.6E-07 43.0 5.0 35 40-74 230-264 (453)
484 PRK07523 gluconate 5-dehydroge 95.2 0.059 1.3E-06 38.6 5.5 34 40-73 9-43 (255)
485 cd01485 E1-1_like Ubiquitin ac 95.2 0.045 9.8E-07 38.6 4.7 34 40-73 18-52 (198)
486 PRK00066 ldh L-lactate dehydro 95.2 0.049 1.1E-06 41.1 5.2 33 41-73 6-40 (315)
487 PRK07502 cyclohexadienyl dehyd 95.2 0.046 1E-06 40.8 5.1 32 42-73 7-40 (307)
488 PRK12548 shikimate 5-dehydroge 95.2 0.047 1E-06 40.7 5.0 34 40-73 125-159 (289)
489 TIGR01035 hemA glutamyl-tRNA r 95.2 0.04 8.7E-07 43.1 4.8 35 39-73 178-213 (417)
490 PRK10669 putative cation:proto 95.2 0.051 1.1E-06 44.0 5.5 35 41-75 417-451 (558)
491 PRK08017 oxidoreductase; Provi 95.1 0.043 9.4E-07 39.1 4.6 32 42-73 3-35 (256)
492 cd05293 LDH_1 A subgroup of L- 95.1 0.048 1E-06 41.2 5.0 33 41-73 3-37 (312)
493 TIGR01318 gltD_gamma_fam gluta 95.1 0.039 8.4E-07 43.7 4.7 34 40-73 281-315 (467)
494 KOG2495 NADH-dehydrogenase (ub 95.1 0.014 3E-07 45.9 2.1 33 42-74 219-265 (491)
495 cd00755 YgdL_like Family of ac 95.1 0.049 1.1E-06 39.4 4.8 34 40-73 10-44 (231)
496 PRK01390 murD UDP-N-acetylmura 95.1 0.033 7.2E-07 43.8 4.2 33 41-73 9-41 (460)
497 PRK11559 garR tartronate semia 95.1 0.039 8.5E-07 40.8 4.4 32 42-73 3-34 (296)
498 PTZ00117 malate dehydrogenase; 95.0 0.055 1.2E-06 40.9 5.1 35 40-74 4-39 (319)
499 COG1648 CysG Siroheme synthase 95.0 0.052 1.1E-06 38.8 4.6 35 39-73 10-44 (210)
500 PRK08223 hypothetical protein; 95.0 0.055 1.2E-06 40.5 4.8 35 39-73 25-60 (287)
No 1
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=99.61 E-value=2.9e-15 Score=109.21 Aligned_cols=79 Identities=39% Similarity=0.730 Sum_probs=74.0
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHHHHCCCCCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGWLERGLVQP 122 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 122 (125)
+|+|||+|++|++||+.|+..|+.|+||||+ .+.|||..+++.... .+|.|++||....+.|..+++.|.+.|++..
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg-~GvGGRlAtRRl~~g--~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~ 79 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKG-RGVGGRLATRRLDGG--RFDHGAQYFKPRDELFLRAVEALRDDGLVDV 79 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcC-CCcccchheeccCCc--cccccceeecCCchHHHHHHHHHHhCCceee
Confidence 6999999999999999999999999999998 889999999998744 3999999999999999999999999999999
Q ss_pred CC
Q 033175 123 WK 124 (125)
Q Consensus 123 ~~ 124 (125)
|.
T Consensus 80 W~ 81 (331)
T COG3380 80 WT 81 (331)
T ss_pred cc
Confidence 83
No 2
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.49 E-value=1.3e-13 Score=81.62 Aligned_cols=65 Identities=34% Similarity=0.483 Sum_probs=53.0
Q ss_pred EECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccC--chHHHHHHHH
Q 033175 46 IIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVN--DSRFRELVDG 113 (125)
Q Consensus 46 VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~ 113 (125)
|||+|++||++|+.|+++|++|+|+|+. ...||++.+.... +..++.+.+++... .+.+.+++++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~-~~~GG~~~~~~~~--g~~~d~g~~~~~~~~~~~~~~~l~~~ 67 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKN-DRLGGRARSFRIP--GYRFDLGAHYFFPPDDYPNLFRLLRE 67 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESS-SSSSGGGCEEEET--TEEEETSS-SEEETTSCHHHHHHHHT
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecC-cccCcceeEEEEC--CEEEeeccEEEeCCCCchHHHHHHcC
Confidence 8999999999999999999999999997 7799999887774 46788898888763 4667666654
No 3
>PRK07208 hypothetical protein; Provisional
Probab=99.33 E-value=6.1e-12 Score=98.52 Aligned_cols=74 Identities=28% Similarity=0.301 Sum_probs=62.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHHH
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGWL 115 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (125)
+..+||+|||||++||++|++|+++|++|+|+|+. ...||++.+.... +..+|.|.+.+...++.+.++++++.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~-~~~GG~~~s~~~~--g~~~d~G~h~~~~~~~~~~~l~~~l~ 75 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEAD-PVVGGISRTVTYK--GNRFDIGGHRFFSKSPEVMDLWNEIL 75 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCceeeeeccC--CceEccCCceeccCCHHHHHHHHHhc
Confidence 34578999999999999999999999999999997 6789998776554 46689999888777788888888774
No 4
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.32 E-value=4.4e-12 Score=98.12 Aligned_cols=69 Identities=26% Similarity=0.447 Sum_probs=55.9
Q ss_pred CcEEEECcCHHHHHHHHHHHHcC--CcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHH
Q 033175 42 PRVGIIGGGMAGLACALSWDKRG--VKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDG 113 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (125)
++|+|||||++||+||+.|+++| ++|+|+|++ ...||++.+.... +..+|.|.+.+....+.+..++++
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~-~~~GGr~~t~~~~--g~~~d~G~~~~~~~~~~~~~l~~~ 71 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEAS-DRLGGKIQTVRKD--GFPIELGPESFLARKPSAPALVKE 71 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcC-CCCcceEEEEeeC--CeEEecChHHhcCCcHHHHHHHHH
Confidence 47999999999999999999988 899999997 7799999887654 556899988776665555444444
No 5
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.31 E-value=7.9e-12 Score=98.88 Aligned_cols=66 Identities=24% Similarity=0.273 Sum_probs=57.5
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCch
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDS 105 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (125)
....++|+|||||++||+||.+|.+.|++|+|+|++ ++.|||+++....... .++.|.++++..+.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEAR-dRvGGRI~t~~~~~~~-~vd~Gas~~~g~~~ 77 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEAR-DRVGGRIYTFKSEGGD-HVDLGASVLTGVYN 77 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEecc-CCcCceeEEEecCCCC-eeecCCceecCcCc
Confidence 345679999999999999999999999999999997 8899999998876544 58899999887754
No 6
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.31 E-value=6.5e-12 Score=97.75 Aligned_cols=70 Identities=24% Similarity=0.389 Sum_probs=59.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHc----CCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHH
Q 033175 42 PRVGIIGGGMAGLACALSWDKR----GVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGW 114 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~----g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (125)
+||+|||||++||++|++|+++ |++|+|+|++ ...||++.+.... +..+|.|.+++...++.+.++++++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~-~r~GG~~~t~~~~--g~~~e~G~~~~~~~~~~~~~l~~~l 76 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEAS-DRVGGKIQTVKED--GYLIERGPDSFLERKKSAPDLVKDL 76 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcC-CcCcceEEEEeeC--CEEEecCccccccCChHHHHHHHHc
Confidence 6899999999999999999999 9999999997 7799999886654 5678999999887777665555543
No 7
>PLN02576 protoporphyrinogen oxidase
Probab=99.29 E-value=1e-11 Score=97.69 Aligned_cols=72 Identities=24% Similarity=0.440 Sum_probs=60.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc-CCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHH
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR-GVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDG 113 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~-g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (125)
...+||+|||||++||++|++|+++ |++|+|+|++ ...||++.+.... +..+|.|.+.+...++.+..+++.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~-~rvGGr~~t~~~~--g~~~d~G~~~~~~~~~~~~~l~~~ 82 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEAR-DRVGGNITSVSED--GFIWEEGPNSFQPSDPELTSAVDS 82 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecC-CCCCCceeEeccC--CeEEecCCchhccCcHHHHHHHHc
Confidence 3456899999999999999999999 9999999997 7799999887654 567899999988776666555544
No 8
>PRK07233 hypothetical protein; Provisional
Probab=99.28 E-value=1e-11 Score=95.42 Aligned_cols=69 Identities=33% Similarity=0.521 Sum_probs=56.2
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHH
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGW 114 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (125)
+|+|||||++||+||+.|+++|++|+|+|+. ...||++.+.... +..++.+.+.+...++.+.++++++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~-~~~GG~~~s~~~~--g~~~d~g~~~~~~~~~~~~~l~~~l 69 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEAD-DQLGGLAASFEFG--GLPIERFYHHIFKSDEALLELLDEL 69 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeC-CCCCCceeeeccC--CcchhhhhhhhccccHHHHHHHHHc
Confidence 6999999999999999999999999999997 7789998776654 5567888777766666665555543
No 9
>PLN02612 phytoene desaturase
Probab=99.26 E-value=1.9e-11 Score=98.13 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=76.1
Q ss_pred CCCcchHHHHHhHHhhhhhhhh--hhhhcccccCCCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 4 NPLQETAEDRRMAAREGQLDKK--TFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.|++.++.|.+.+.++...+.. ..........+....+.+|+|||+|++|+++|++|+++|++|+|+|+. ...||+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~-~~~gG~~ 132 (567)
T PLN02612 54 GPLQVVCVDYPRPELENTVNFLEAAALSASFRSAPRPAKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEAR-DVLGGKV 132 (567)
T ss_pred CCceEEecCCCCCchhhHHHHHhhhhhccccccCCCCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecC-CCCCCcc
Confidence 3788888888776544332211 111122222223444679999999999999999999999999999997 6689998
Q ss_pred eeeecCCCcccccccccccccCchHHHHHHHHH
Q 033175 82 GTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGW 114 (125)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (125)
.+.... .+..+|.|.+++...++.+.++++++
T Consensus 133 ~s~~~~-~G~~~D~G~h~~~g~~~~~~~ll~el 164 (567)
T PLN02612 133 AAWKDE-DGDWYETGLHIFFGAYPNVQNLFGEL 164 (567)
T ss_pred eeeEcC-CCCEEcCCceEEeCCCchHHHHHHHh
Confidence 776532 34568999998877767666665554
No 10
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.25 E-value=1.5e-11 Score=95.96 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=56.8
Q ss_pred CcEEEECcCHHHHHHHHHHHHc------CCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHH
Q 033175 42 PRVGIIGGGMAGLACALSWDKR------GVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGW 114 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~------g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (125)
++|+|||||++||++|++|++. |++|+|+|++ ...||++.+.... +..+|.|.+++....+.+.++++++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~-~r~GGr~~T~~~~--g~~~e~G~~~i~~~~~~~~~l~~~l 77 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKE-EYLGGKIHSVEEK--DFIMESGADSIVARNEHVMPLVKDL 77 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecC-CCccceEEEEeeC--CEEEecCcHHHhcCCHHHHHHHHHc
Confidence 4799999999999999999986 3799999997 7799999887654 4668999988876666555555543
No 11
>PLN02268 probable polyamine oxidase
Probab=99.25 E-value=2.1e-11 Score=94.51 Aligned_cols=69 Identities=26% Similarity=0.425 Sum_probs=54.9
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccC--chHHHHHHHH
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVN--DSRFRELVDG 113 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~ 113 (125)
++|+|||||++||+||+.|.+.|++|+|+|++ +..||++.+... .+..+|.|.+++... .+.+.+++++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~-~r~GGri~t~~~--~g~~~d~G~~~i~~~~~~~~~~~l~~~ 71 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESR-DRIGGRVHTDYS--FGFPVDMGASWLHGVCNENPLAPLIGR 71 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-CCCCceeeecCc--CCcccCCCCeeEeccCCCchHHHHHHH
Confidence 47999999999999999999999999999997 789999987543 345689999988542 2334455544
No 12
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.23 E-value=1.6e-11 Score=96.88 Aligned_cols=62 Identities=29% Similarity=0.463 Sum_probs=53.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVND 104 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (125)
+.+||+|||||+.||+||..|+++|++|+|+||. ...||++.+.... ++.+|.++.++....
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~-~~~GG~a~t~e~~--Gf~fd~G~~~~~~~~ 63 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKN-DRVGGRARTFELD--GFRFDTGPSWYLMPD 63 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEec-CCCCcceEEEecc--ceEeccCcceeecCc
Confidence 3579999999999999999999999999999986 7899999887776 778999987766543
No 13
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=3.6e-11 Score=94.13 Aligned_cols=72 Identities=24% Similarity=0.316 Sum_probs=61.3
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHHH
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGWL 115 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (125)
+||+|+|||++||+||+.|+++|++|+|+|++ ...||.+.+..... +..++.|.+.|...+..+-++++++-
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~-~~~GGk~~s~~~~d-g~~~E~glh~f~~~Y~n~~~ll~~~~ 72 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEAR-DRLGGKVASWRDSD-GNHVEHGLHVFFGCYYNLLTLLKELP 72 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEecc-CccCceeeeeecCC-CCeeeeeeEEechhHHHHHHHhhhCC
Confidence 47999999999999999999999999999998 78999998887743 55688999999888777666666543
No 14
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.16 E-value=9.9e-11 Score=92.17 Aligned_cols=58 Identities=31% Similarity=0.374 Sum_probs=51.4
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCccccccccccccc
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTV 102 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~ 102 (125)
+||+|||+|++||+||..|+++|++|+|+|++ ...||++.+.... ++.+|.|.+++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~-~~~GG~~~t~~~~--G~~fD~G~~~~~~ 59 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQH-AQPGGCAGTFRRR--GFTFDVGATQVAG 59 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecC-CCCCCccceeccC--CEEEeecceEEEe
Confidence 68999999999999999999999999999997 7799998887663 6778989888754
No 15
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.14 E-value=1.1e-10 Score=92.04 Aligned_cols=66 Identities=27% Similarity=0.379 Sum_probs=53.7
Q ss_pred EEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHH
Q 033175 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDG 113 (125)
Q Consensus 44 v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (125)
|+|||||++||+||.+|++.|++|+|+|++ ...||++.+.... ++.+|.|.+++... ..+.++++.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~-~~~GG~~~t~~~~--G~~fD~G~~~~~~~-~~~~~l~~~ 66 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQR-DKPGGRAGVLEDD--GFRFDTGPTVITMP-EALEELFAL 66 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECC-CCCcCceEEEecC--CeEEecCCeEEccc-cHHHHHHHH
Confidence 689999999999999999999999999997 7799999887664 67789998887543 334444443
No 16
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.14 E-value=1.6e-10 Score=90.00 Aligned_cols=70 Identities=23% Similarity=0.362 Sum_probs=55.4
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHH
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGW 114 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (125)
+|+|||+|++||++|++|+++|++|+|+|+. ...||++.+... ..+..+|.|.+++...++.+.++++++
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~-~~~GG~~~s~~~-~~g~~~d~G~~~~~~~~~~~~~l~~~l 70 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEAR-DVLGGKVAAWKD-EDGDWYETGLHIFFGAYPNMLQLLKEL 70 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCCCcceeEC-CCCCEEEcCcceeccCCchHHHHHHHc
Confidence 5899999999999999999999999999997 678998876532 124567888888776666655555543
No 17
>PLN02487 zeta-carotene desaturase
Probab=99.13 E-value=3e-10 Score=91.25 Aligned_cols=95 Identities=14% Similarity=0.227 Sum_probs=67.1
Q ss_pred Hhhhhhhhhhhhh--cccccCCCCC--CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCccc
Q 033175 17 AREGQLDKKTFAQ--EQVTFTAPVS--SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLI 92 (125)
Q Consensus 17 ~~~~~~~~~~~~~--~~~~~~~~~~--~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~ 92 (125)
.+++++.+..... .+....+... ..++|+|||+|++|+++|+.|++.|++|+|+|+. ...||.+.+.... .+..
T Consensus 47 ~l~r~~~d~~~~~~~~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~-~~~gG~~~s~~~~-~g~~ 124 (569)
T PLN02487 47 SLDSNVSDMSVNAPKGLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESR-PFIGGKVGSFVDK-NGNH 124 (569)
T ss_pred HHHHHhhhhhccccccccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecC-CCCCCceeeeeec-CCcE
Confidence 4566666665544 4443332222 2359999999999999999999999999999997 6688888776432 2455
Q ss_pred ccccccccccCchHHHHHHHH
Q 033175 93 FDHAAQFFTVNDSRFRELVDG 113 (125)
Q Consensus 93 ~~~~~~~~~~~~~~~~~l~~~ 113 (125)
++.|.+.+...++.+.+++++
T Consensus 125 ~e~G~h~~~~~~~~~~~ll~~ 145 (569)
T PLN02487 125 IEMGLHVFFGCYNNLFRLMKK 145 (569)
T ss_pred EecceeEecCCcHHHHHHHHh
Confidence 788888877666655555443
No 18
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.13 E-value=1.7e-10 Score=90.02 Aligned_cols=72 Identities=33% Similarity=0.592 Sum_probs=58.8
Q ss_pred cEEEECcCHHHHHHHHHHHHcC--CcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHHHHCCCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRG--VKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGWLERGLV 120 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 120 (125)
+|+|||||++||++|++|++++ .+|+|||++ ...||...+.... ++.++.|.+.+.... +..++.+.+.|+.
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~-~r~GG~l~T~~~~--G~~~e~G~~~f~~~~---~~~l~li~eLGle 75 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEAD-DRVGGLLRTVKID--GFLFERGPHHFLARK---EEILDLIKELGLE 75 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecC-CCCCceEEEEeeC--CEEEeechhheecch---HHHHHHHHHhCcH
Confidence 6999999999999999999999 999999997 7799999887554 677899888877663 4455555555543
No 19
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=99.13 E-value=2.3e-10 Score=85.37 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=62.9
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCc-ccccccccccccCchHHHHHHHHHH
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQP-LIFDHAAQFFTVNDSRFRELVDGWL 115 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (125)
+|++|||+|++|+.+|..|++.|.+|+|+|++ .+.||++........+ ..+..|++.|..+++...++++.+.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR-~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~ 75 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKR-NHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFT 75 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEEecc-ccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhh
Confidence 68999999999999999999999999999998 6799999888876445 4455799999999998888877654
No 20
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.08 E-value=4.2e-10 Score=88.65 Aligned_cols=69 Identities=20% Similarity=0.381 Sum_probs=55.1
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHH
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDG 113 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (125)
+|+|||||++|+++|+.|++.|++|+|+|+. ...||++.+.... .+..++.|.+.+...++.+.+++++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~-~~~GG~~~~~~~~-~g~~~d~G~~~~~~~~~~~~~~~~~ 69 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESR-SFIGGKVGSWVDG-DGNHIEMGLHVFFGCYANLFRLMKK 69 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEec-CCCCceeeeeecC-CCceEeeceEEecCchHHHHHHHHH
Confidence 5899999999999999999999999999997 6789988775432 2556788988887666655555444
No 21
>PRK12831 putative oxidoreductase; Provisional
Probab=99.03 E-value=2.4e-09 Score=84.18 Aligned_cols=65 Identities=25% Similarity=0.296 Sum_probs=50.4
Q ss_pred HHhhhhhhhhhhhhcccccCCCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 16 AAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
..+++++.+..+..++....+.....++|+|||+|++|+++|++|++.|++|+|||+. ...||.+
T Consensus 115 ~~l~r~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~-~~~GG~l 179 (464)
T PRK12831 115 GKLERFVADWARENGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL-HEPGGVL 179 (464)
T ss_pred hHHHHHHHHHHHHcCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC-CCCCCee
Confidence 3577777776665555433333456789999999999999999999999999999986 4566654
No 22
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.00 E-value=1.1e-09 Score=86.35 Aligned_cols=57 Identities=25% Similarity=0.238 Sum_probs=49.0
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccc
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFT 101 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~ 101 (125)
+||+|||+|++||++|..|+++|++|+|+|++ ...||++.+.... ++.++.+.+++.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~-~~~GG~~~~~~~~--G~~fd~g~~~~~ 57 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERY-LIPGGSAGYFERE--GYRFDVGASMIF 57 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECC-CCCCCceeEeccC--CEEEEecchhhe
Confidence 48999999999999999999999999999997 7789998876553 667788877754
No 23
>PLN02568 polyamine oxidase
Probab=99.00 E-value=1.6e-09 Score=86.60 Aligned_cols=70 Identities=29% Similarity=0.412 Sum_probs=55.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcC-----CcEEEEecCCCCCCccceeeecCCCcccccccccccccC-chHHHHHHHH
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRG-----VKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVN-DSRFRELVDG 113 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g-----~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~ 113 (125)
..||+|||+|++||++|++|++.| ++|+|+|++ ...||++.+.... +..++.|.+++... ...+.++.+.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~-~~~GGr~~t~~~~--g~~~d~G~~~~~g~~~~~~~~l~~~ 80 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG-DRIGGRINTSEFG--GERIEMGATWIHGIGGSPVYKIAQE 80 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCC-CCcCCeEEEEEeC--CeEEecCCceeCCCCCCHHHHHHHH
Confidence 468999999999999999999887 899999997 6689998887654 45688898888743 3444444433
No 24
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=99.00 E-value=1.5e-09 Score=83.67 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=64.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcE--EEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHHHH
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKS--TVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGWLE 116 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V--~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (125)
....+|+|+|||++||++||+|++.+-+| +|+|+. .+.||++.+ .....+++++.|.+.++...+.-...++.+.+
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~-~RvGGwirS-~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~d 86 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEAS-PRVGGWIRS-DRMQNGFIFEEGPRTLRPAGPGGAETLDLVSD 86 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecC-Ccccceeee-ccCCCceeeccCCCccCcCCcchhHHHHHHHH
Confidence 44678999999999999999999998765 559997 779999877 33345788999999999888765566777777
Q ss_pred CCCC
Q 033175 117 RGLV 120 (125)
Q Consensus 117 ~g~~ 120 (125)
.|+.
T Consensus 87 LGl~ 90 (491)
T KOG1276|consen 87 LGLE 90 (491)
T ss_pred cCcc
Confidence 7764
No 25
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.99 E-value=2.8e-09 Score=90.45 Aligned_cols=65 Identities=28% Similarity=0.293 Sum_probs=48.9
Q ss_pred hHHhhhhhhhhhhhhcccccCCCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 15 MAAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+..+++++.+..+..++.. +......++|+|||||++||++|.+|++.|++|+|||+. ...||..
T Consensus 405 I~~ler~~~d~~~~~~~~~-~~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~-~~~GG~l 469 (1006)
T PRK12775 405 IGRLERFVGDNARAKPVKP-PRFSKKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEAL-HVVGGVL 469 (1006)
T ss_pred ecHHHHHHHHHHHHcCCCC-CCCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC-CCCccee
Confidence 3456777776665555433 222334689999999999999999999999999999997 5566654
No 26
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.99 E-value=5.5e-10 Score=79.68 Aligned_cols=41 Identities=29% Similarity=0.384 Sum_probs=35.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
..||+|||+|++||+||++|+++|.+|+|||+.....||.+
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 46899999999999999999999999999999755444444
No 27
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.98 E-value=1.8e-09 Score=83.02 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=55.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHHH
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGWL 115 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (125)
.||+|||||++|+++|++|++.|.+|+|+|++ ...||.+.+..... ...++.|.+.+....+...++++.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~-~~iGG~~~~~~~~g-~~~~~~G~h~f~t~~~~v~~~~~~~~ 73 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKR-NHIGGNCYDEVDET-ILFHQYGPHIFHTNNQYVWDYISPFF 73 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCCceeeecCCC-ceEEeecceeEecCcHHHHHHHHhhc
Confidence 58999999999999999999999999999997 66888776543321 22346777877766676666666553
No 28
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.95 E-value=5.8e-09 Score=85.04 Aligned_cols=66 Identities=33% Similarity=0.457 Sum_probs=50.5
Q ss_pred hHHhhhhhhhhhhhhcccccC-CCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 15 MAAREGQLDKKTFAQEQVTFT-APVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+..+++++.+..+..+|.... ......++|+|||+|++|+++|+.|++.|++|+|||+. ...||.+
T Consensus 300 I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~-~~~GG~l 366 (654)
T PRK12769 300 IGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH-PEIGGLL 366 (654)
T ss_pred cCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCcee
Confidence 455777777777666554322 12245789999999999999999999999999999996 5567654
No 29
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.95 E-value=3.4e-09 Score=84.84 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc----CCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHH
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR----GVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDG 113 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~----g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 113 (125)
....+|+|||||++||++|++|++. |.+|+|+|+. ...||++.+......++.++.|.. +....+.+.+++..
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~-~~~GG~~~~~~~~~~Gy~~~~G~~-~~~~y~~l~~ll~~ 96 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEEL-DVPGGSLDGAGNPEKGYVARGGRE-MENHFECLWDLFRS 96 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCC-CCCCCCccCcccccCCEEEECCCC-ccchHHHHHHHHHh
Confidence 3357999999999999999999995 6899999997 668998866544344555555544 33444555555433
No 30
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.94 E-value=5.7e-09 Score=88.10 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=37.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
..+++|+|||+|++||+||++|++.|++|+|||+. ...||..
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~-~~~GG~l 345 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAF-HDLGGVL 345 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeC-CCCCceE
Confidence 34789999999999999999999999999999996 6677765
No 31
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=98.94 E-value=3.4e-09 Score=82.53 Aligned_cols=71 Identities=24% Similarity=0.406 Sum_probs=57.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecCCCCCCccceeeecCCCccccccccccccc-CchHHHHHHHH
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTV-NDSRFRELVDG 113 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 113 (125)
...+|+|||||++|++||.+|.+.|+ +|+|+|.. +++|||+.+...... .++.|++|+.. ......++.++
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~-dRIGGRI~ti~~~d~--~ielGAqwihG~~gNpVY~la~~ 92 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEAS-DRIGGRIHTIPFADG--VIELGAQWIHGEEGNPVYELAKE 92 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEec-cccCceEeeEEcCCC--eEeecceeecCCCCChHHHHHHH
Confidence 34589999999999999999998765 89999996 889999988777533 58889999987 44555555553
No 32
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.93 E-value=9.8e-09 Score=80.79 Aligned_cols=66 Identities=26% Similarity=0.360 Sum_probs=49.9
Q ss_pred hHHhhhhhhhhhhhhcc-cccCCCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 15 MAAREGQLDKKTFAQEQ-VTFTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 15 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+..+++++.+......+ ....+.....++|+|||+|++|+++|..|++.|++|+|||+. ...||.+
T Consensus 116 i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~-~~~GG~l 182 (471)
T PRK12810 116 IKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERA-DRIGGLL 182 (471)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecC-CCCCcee
Confidence 45677777776666555 222233445689999999999999999999999999999997 4566553
No 33
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.92 E-value=1.1e-09 Score=78.00 Aligned_cols=39 Identities=33% Similarity=0.476 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRR 80 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~ 80 (125)
..||+|||+|++|++||++|+++|++|.+||+. ...||.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~-~~~GGg 55 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERK-LSPGGG 55 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESS-SS-BTT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecC-CCCCcc
Confidence 579999999999999999999999999999997 434443
No 34
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.91 E-value=1.1e-08 Score=83.28 Aligned_cols=67 Identities=27% Similarity=0.410 Sum_probs=52.6
Q ss_pred HhHHhhhhhhhhhhhhcccccCCC-CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 14 RMAAREGQLDKKTFAQEQVTFTAP-VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.+..+++++.+..+..+|...... ....++|+|||+|++|+++|+.|++.|++|+|||+. ...||.+
T Consensus 282 ~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~-~~~GG~l 349 (639)
T PRK12809 282 SIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRH-PEIGGML 349 (639)
T ss_pred ChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCC-CCCCCee
Confidence 355678888888777777543322 234789999999999999999999999999999997 5566654
No 35
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.91 E-value=8.6e-09 Score=87.19 Aligned_cols=42 Identities=33% Similarity=0.487 Sum_probs=37.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
...++|+|||||++|++||++|++.|++|+|||+. ...||..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~-~~lGG~l 576 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK-EKPGGVV 576 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecc-cccCcee
Confidence 34689999999999999999999999999999997 5577765
No 36
>PLN02676 polyamine oxidase
Probab=98.90 E-value=4.8e-09 Score=82.97 Aligned_cols=59 Identities=22% Similarity=0.465 Sum_probs=49.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecCCCCCCccceeeecCCCcccccccccccc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFT 101 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~ 101 (125)
..+||+|||+|++||++|++|+++|. +|+|+|++ ...||++.+.... +..++.|.+++.
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~-~~~GG~~~~~~~~--g~~~d~g~~~~~ 84 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEAT-DRIGGRMRKANFA--GVSVELGANWVE 84 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCC-CCCCCcceeecCC--CeEEecCCEEEE
Confidence 35789999999999999999999998 69999997 6789988765443 456788888875
No 37
>PLN02529 lysine-specific histone demethylase 1
Probab=98.90 E-value=6.3e-09 Score=85.69 Aligned_cols=64 Identities=28% Similarity=0.339 Sum_probs=52.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCc--ccccccccccccC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQP--LIFDHAAQFFTVN 103 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~--~~~~~~~~~~~~~ 103 (125)
...++|+|||+|++|++||..|+++|++|+|+|+. ...||++.+......+ ..+|.|..++...
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~-~~~GG~~~t~~~~~~g~~~~~DlGaswi~g~ 223 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGR-NRPGGRVYTQKMGRKGQFAAVDLGGSVITGI 223 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecC-ccCcCceeeecccCCCCceEEecCCeecccc
Confidence 34679999999999999999999999999999997 7799998777653222 3578888888765
No 38
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.89 E-value=6.9e-09 Score=80.46 Aligned_cols=62 Identities=26% Similarity=0.389 Sum_probs=48.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVN 103 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~ 103 (125)
.+..||+|||+|++||++|+.|.+.|++|+|+|.+ ...|||+.+.+.. +...|.+-+++...
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar-~r~GGR~~t~r~~--~~~~d~gG~~i~p~ 66 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEAR-DRVGGRSLTARAG--GEYTDLGGQYINPT 66 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEecc-CCcCceeEEEecc--ceeeccCCcccCcc
Confidence 55789999999999999999999999999999997 7799998776652 22244454454443
No 39
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.89 E-value=3.7e-09 Score=83.17 Aligned_cols=44 Identities=27% Similarity=0.415 Sum_probs=38.7
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccce
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMG 82 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~ 82 (125)
....++|+|||||++||+||.+|.+.|++|+|||++ ...||.+.
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~-~~vGG~W~ 50 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRREGHTVVVFERE-KQVGGLWV 50 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecC-CCCcceee
Confidence 344689999999999999999999999999999997 56787763
No 40
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.88 E-value=6.2e-09 Score=81.57 Aligned_cols=36 Identities=25% Similarity=0.480 Sum_probs=32.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTGN 74 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~ 74 (125)
....||+|||||++|+++|++|+++ |.+|+|+|++.
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 3357999999999999999999998 89999999963
No 41
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.87 E-value=4.9e-09 Score=79.25 Aligned_cols=73 Identities=19% Similarity=0.335 Sum_probs=53.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeec--CCCccccccccccccc-CchHHHHHHHH
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMI--GPQPLIFDHAAQFFTV-NDSRFRELVDG 113 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 113 (125)
.+..+|+|||+|++||+||+.|+++ ++||+||++ ...||+..+... ...+...|.|...|.. .++.+-.+++.
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~-~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYpnl~~Lf~~ 81 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEAD-RRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYPNLTRLFKT 81 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEEEecc-ccccCccceeeccccCCceeecceeEEecCCCcchHHHHHHH
Confidence 3467899999999999999999764 699999997 789998877652 3345556777666654 45555444443
No 42
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.87 E-value=2.3e-08 Score=78.28 Aligned_cols=65 Identities=32% Similarity=0.360 Sum_probs=46.6
Q ss_pred HHhhhhhhhhhhhhcccccC-CCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 16 AAREGQLDKKTFAQEQVTFT-APVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
..+++++.+.....++...+ +.+...++|+|||+|++|+++|+.|++.|++|+|||+. ...||.+
T Consensus 107 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~-~~~GG~l 172 (449)
T TIGR01316 107 GALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEAL-HKPGGVV 172 (449)
T ss_pred HHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCcEe
Confidence 44566665554443332222 23345689999999999999999999999999999996 4566544
No 43
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.86 E-value=4.9e-09 Score=77.98 Aligned_cols=31 Identities=42% Similarity=0.707 Sum_probs=30.3
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
||+|||||++|+++|++|+++|++|+|+|++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~ 31 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG 31 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence 7999999999999999999999999999997
No 44
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.85 E-value=1e-08 Score=85.04 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=51.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCc--ccccccccccccC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQP--LIFDHAAQFFTVN 103 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~--~~~~~~~~~~~~~ 103 (125)
...++|+|||+|++|+++|+.|++.|++|+|+|++ ...||++.+......+ ..++.|..++...
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~-~r~GGr~~t~~~~g~~~~~~~d~Gas~i~g~ 301 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGR-ARPGGRVKTMKMKGDGVVAAADLGGSVLTGI 301 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecc-ccCCCcccccccCCCCcceeccCCceeecCC
Confidence 34678999999999999999999999999999997 7789998776654322 2467777777654
No 45
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.83 E-value=3.6e-08 Score=77.63 Aligned_cols=66 Identities=30% Similarity=0.418 Sum_probs=48.8
Q ss_pred hHHhhhhhhhhhhhhcccccC-CCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 15 MAAREGQLDKKTFAQEQVTFT-APVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+..+++++.+.....+|.... ......++|+|||+|++|+++|..|++.|++|+++|+. ...||.+
T Consensus 114 i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~-~~~gG~l 180 (467)
T TIGR01318 114 IGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQVVVFDRH-PEIGGLL 180 (467)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC-CCCCcee
Confidence 345666666665554444322 12335689999999999999999999999999999997 5566654
No 46
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.83 E-value=3.7e-08 Score=81.54 Aligned_cols=66 Identities=26% Similarity=0.375 Sum_probs=47.0
Q ss_pred hHHhhhhhhhhhhhhcccccC-CCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 15 MAAREGQLDKKTFAQEQVTFT-APVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+..+++++.+....+.+...+ ......++|+|||||++|+++|++|++.|++|+|||+. ...||..
T Consensus 404 i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~-~~~GG~l 470 (752)
T PRK12778 404 IGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEAL-HEIGGVL 470 (752)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecC-CCCCCee
Confidence 344566665554444332222 12345689999999999999999999999999999996 4566654
No 47
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.81 E-value=1.6e-08 Score=82.54 Aligned_cols=33 Identities=39% Similarity=0.700 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..||+|||||++|+++|++|+++|++|+|+|++
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~ 292 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTLYEAD 292 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEEEecC
Confidence 469999999999999999999999999999996
No 48
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.81 E-value=3.3e-08 Score=83.65 Aligned_cols=42 Identities=36% Similarity=0.522 Sum_probs=37.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
...++|+|||||++|+++|++|+++|++|+|||+. ...||..
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~-~~~GG~l 578 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFERE-ENAGGVV 578 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecc-cccCcce
Confidence 45789999999999999999999999999999996 5567765
No 49
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.80 E-value=5.1e-08 Score=76.38 Aligned_cols=66 Identities=23% Similarity=0.384 Sum_probs=46.9
Q ss_pred hHHhhhhhhhhhhhhcccccCCCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 15 MAAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+..++.++.+..+...+......+...++|+|||||++|+++|..|++.|++|+|||+. ...||..
T Consensus 114 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~-~~~gG~l 179 (457)
T PRK11749 114 IGRLERYITDWAMETGWVLFKRAPKTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEAR-DKAGGLL 179 (457)
T ss_pred hHHHHHHHHHHHHhcCCCCCCCCccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccC-CCCCcEe
Confidence 34455555555554444322223345689999999999999999999999999999997 4455543
No 50
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=98.79 E-value=2.6e-08 Score=84.23 Aligned_cols=65 Identities=31% Similarity=0.441 Sum_probs=56.8
Q ss_pred HHhhhhhhhhhhhhcccccCCC-CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 16 AAREGQLDKKTFAQEQVTFTAP-VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
-.+|+.+.+++|.++|+.+.++ ....++|.|||+|++||.||-+|-+.|+.|+|+||. +++||..
T Consensus 1759 ksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~-dr~ggll 1824 (2142)
T KOG0399|consen 1759 KSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERS-DRVGGLL 1824 (2142)
T ss_pred cchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEec-CCcCcee
Confidence 3578888999999999987654 355789999999999999999999999999999997 7788765
No 51
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.78 E-value=1.1e-08 Score=78.86 Aligned_cols=33 Identities=33% Similarity=0.499 Sum_probs=31.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+||+|||+|++|++||+.|+++|++|+|+|+.
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~ 35 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKG 35 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEEEecC
Confidence 579999999999999999999999999999996
No 52
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.78 E-value=1.2e-08 Score=78.35 Aligned_cols=38 Identities=26% Similarity=0.470 Sum_probs=34.0
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
....+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 52 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPA 52 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCc
Confidence 34468999999999999999999999999999999743
No 53
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=98.77 E-value=4e-08 Score=77.21 Aligned_cols=67 Identities=27% Similarity=0.326 Sum_probs=55.9
Q ss_pred HhHHhhhhhhhhhhhhcccccCCC-CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 14 RMAAREGQLDKKTFAQEQVTFTAP-VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
....++.++.+..+...|.....+ ....++|+|||+|++|+.+|..|++.|+.|+++|+. ...||.+
T Consensus 95 ~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~-~~~GGll 162 (457)
T COG0493 95 NIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERV-ALDGGLL 162 (457)
T ss_pred hhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCc-CCCceeE
Confidence 345688889999999988776533 344589999999999999999999999999999996 6677775
No 54
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.76 E-value=3e-08 Score=75.30 Aligned_cols=36 Identities=39% Similarity=0.636 Sum_probs=33.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
...||+|||||++|+++|++|+++|.+|+++|+...
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 467999999999999999999999999999999733
No 55
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.76 E-value=2.3e-08 Score=75.91 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+||+|||||++|+++|++|+++|++|+|+|+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~ 32 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLLLEQF 32 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 48999999999999999999999999999996
No 56
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=98.75 E-value=9.6e-08 Score=76.73 Aligned_cols=64 Identities=33% Similarity=0.433 Sum_probs=47.3
Q ss_pred HhhhhhhhhhhhhcccccCCCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 17 AREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.++++..+.....++..........++|+|||+|++||++|+.|++.|++|+|+|+. ...||.+
T Consensus 113 ~l~r~~~~~~~~~~~~~~~~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~-~~~GG~l 176 (564)
T PRK12771 113 AVERFLGDYAIANGWKFPAPAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG-PKLGGMM 176 (564)
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCCee
Confidence 355555554454455433333456789999999999999999999999999999997 5566654
No 57
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.75 E-value=2.5e-08 Score=75.60 Aligned_cols=34 Identities=26% Similarity=0.257 Sum_probs=32.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.+||+|||||++|+++|++|+++|++|+|+|++.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~ 36 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM 36 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 5799999999999999999999999999999973
No 58
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.75 E-value=1e-08 Score=78.49 Aligned_cols=35 Identities=43% Similarity=0.546 Sum_probs=32.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..+||+|||||++||.||..++++|++|+|||+++
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~ 36 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGP 36 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCc
Confidence 35799999999999999999999999999999973
No 59
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.75 E-value=1.3e-08 Score=75.63 Aligned_cols=34 Identities=35% Similarity=0.591 Sum_probs=29.7
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
.||+|||||++|+++|..|+++|++|+|||+.+.
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccccccchhccc
Confidence 5899999999999999999999999999999643
No 60
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.74 E-value=2e-08 Score=73.47 Aligned_cols=35 Identities=31% Similarity=0.482 Sum_probs=32.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
.+||+|||+|++|+++|+.|+++|++|+|+|+++.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~ 55 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 58999999999999999999999999999999743
No 61
>PLN03000 amine oxidase
Probab=98.74 E-value=4.4e-08 Score=81.73 Aligned_cols=64 Identities=28% Similarity=0.315 Sum_probs=53.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCC--CcccccccccccccCc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGP--QPLIFDHAAQFFTVND 104 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~--~~~~~~~~~~~~~~~~ 104 (125)
..++|+|||+|++|+.+|++|.+.|++|+|+|++ ...||++.+..... .+..+|.|..++....
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~-~riGGRi~T~~~~g~~~~~~~DlGas~i~g~~ 248 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGR-KRPGGRVYTKKMEANRVGAAADLGGSVLTGTL 248 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEcc-CcCCCCcceecccCCCCceEeecCCeEEeCCC
Confidence 4579999999999999999999999999999997 77999998876542 2345788888876653
No 62
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.74 E-value=1.1e-07 Score=75.34 Aligned_cols=66 Identities=26% Similarity=0.364 Sum_probs=48.3
Q ss_pred hHHhhhhhhhhhhhhcccccC-CCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 15 MAAREGQLDKKTFAQEQVTFT-APVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+..+++++.+..+...+.... +.....++|+|||+|++|+++|..|++.|++|+|||+. ...||..
T Consensus 116 I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~-~~~gG~l 182 (485)
T TIGR01317 116 IKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERE-DRCGGLL 182 (485)
T ss_pred hhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecC-CCCCcee
Confidence 445666666665555553322 22334579999999999999999999999999999997 4566544
No 63
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.72 E-value=1.3e-07 Score=77.23 Aligned_cols=43 Identities=37% Similarity=0.543 Sum_probs=37.4
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
....++|+|||+|++|+++|+.|++.|++|+|||+. ...||.+
T Consensus 190 ~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~-~~~GG~l 232 (652)
T PRK12814 190 PKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDAN-EQAGGMM 232 (652)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCcee
Confidence 345689999999999999999999999999999996 5567654
No 64
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.71 E-value=2.1e-08 Score=78.06 Aligned_cols=42 Identities=26% Similarity=0.282 Sum_probs=36.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccce
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMG 82 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~ 82 (125)
.+||+|||||++|+.+|.+|+++|++|+|||+.+...||.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~ 44 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCI 44 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEe
Confidence 589999999999999999999999999999996445677654
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.71 E-value=2.7e-08 Score=72.82 Aligned_cols=38 Identities=34% Similarity=0.578 Sum_probs=33.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG 79 (125)
..||+|||+|++|++||++|++.|++|+|+|+.+ ..||
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~-~~Gg 62 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL-SFGG 62 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC-CCCC
Confidence 5799999999999999999999999999999973 3443
No 66
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.69 E-value=3e-08 Score=77.22 Aligned_cols=33 Identities=30% Similarity=0.463 Sum_probs=31.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+||+|||||++|++||+.|+++|++|+|+|+.
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~ 37 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLVIERG 37 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcC
Confidence 589999999999999999999999999999996
No 67
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.68 E-value=5.1e-08 Score=74.99 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=36.0
Q ss_pred hhhcccccCCCCCCCCcEEEECcCHHHHHHHHHHHHc-CC-cEEEEecCC
Q 033175 27 FAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKR-GV-KSTVFDTGN 74 (125)
Q Consensus 27 ~~~~~~~~~~~~~~~~~v~VIG~G~~Gl~~A~~l~~~-g~-~V~viE~~~ 74 (125)
+++.|.... ....+||+|||||++|+++|++|+++ |. +|+|+|+..
T Consensus 18 ~~~~~~~~~--~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 18 WKPAWRSPE--PKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCcccCCCC--CCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 444554322 34468999999999999999999995 95 999999963
No 68
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.68 E-value=3.4e-08 Score=76.91 Aligned_cols=41 Identities=22% Similarity=0.221 Sum_probs=35.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.+||+|||||++|+++|..|++.|++|+|||+.+...||.+
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c 43 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTC 43 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceee
Confidence 58999999999999999999999999999999743357654
No 69
>PRK10015 oxidoreductase; Provisional
Probab=98.68 E-value=3.3e-08 Score=77.02 Aligned_cols=34 Identities=26% Similarity=0.486 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.+||+|||||++|++||+.|+++|++|+|+|+.+
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~ 38 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLVIERGD 38 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5899999999999999999999999999999963
No 70
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.67 E-value=2.9e-08 Score=77.11 Aligned_cols=32 Identities=38% Similarity=0.599 Sum_probs=25.5
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+||+|||||++||.||..|++.|.+|+|+|++
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~ 32 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERN 32 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 58999999999999999999999999999997
No 71
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.67 E-value=3.6e-08 Score=75.88 Aligned_cols=33 Identities=33% Similarity=0.687 Sum_probs=31.3
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+||+|||||++|+++|++|++.|++|+|+|++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 589999999999999999999999999999974
No 72
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.67 E-value=4.3e-08 Score=74.25 Aligned_cols=33 Identities=33% Similarity=0.535 Sum_probs=31.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+||+|||||++|+++|++|+++|++|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 489999999999999999999999999999963
No 73
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.66 E-value=3.5e-08 Score=71.91 Aligned_cols=33 Identities=21% Similarity=0.437 Sum_probs=31.2
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+||+|||||++|+++|+.|+++|.+|+|+|+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 589999999999999999999999999999973
No 74
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.66 E-value=4e-08 Score=76.82 Aligned_cols=41 Identities=27% Similarity=0.347 Sum_probs=36.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
..+||+|||||++|+.+|.+|++.|++|+|||+. ...||.+
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~-~~~GG~~ 44 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERY-RNVGGGC 44 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCEEEEEecc-ccccccc
Confidence 3589999999999999999999999999999996 4567665
No 75
>PRK08013 oxidoreductase; Provisional
Probab=98.65 E-value=3.9e-08 Score=75.67 Aligned_cols=35 Identities=34% Similarity=0.511 Sum_probs=32.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
.+||+|||||++|+++|+.|+++|++|+|+|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence 47999999999999999999999999999999743
No 76
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.65 E-value=3.6e-08 Score=76.79 Aligned_cols=39 Identities=33% Similarity=0.521 Sum_probs=31.2
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccce
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMG 82 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~ 82 (125)
||+|||||++|++||..+++.|.+|+|+|+. ...||...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~-~~lGG~~t 39 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKG-GFLGGMAT 39 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SS-SSSTGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECC-ccCCCcce
Confidence 7999999999999999999999999999997 55777653
No 77
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.65 E-value=5.4e-08 Score=74.70 Aligned_cols=33 Identities=33% Similarity=0.637 Sum_probs=31.3
Q ss_pred CcEEEECcCHHHHHHHHHHHHc--CCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKR--GVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~ 74 (125)
.||+|||||++|+++|++|+++ |++|+|+|+++
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 6899999999999999999999 99999999973
No 78
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.65 E-value=3.5e-08 Score=75.69 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 58999999999999999999999999999986
No 79
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.65 E-value=3.4e-08 Score=74.85 Aligned_cols=32 Identities=38% Similarity=0.686 Sum_probs=30.6
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
||+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 69999999999999999999999999999974
No 80
>PRK09126 hypothetical protein; Provisional
Probab=98.65 E-value=4.2e-08 Score=74.92 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=32.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 4789999999999999999999999999999974
No 81
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.64 E-value=7e-08 Score=76.70 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=32.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+||+|||||++|+++|+.|+++|++|+|+|++
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~ 38 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQD 38 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4589999999999999999999999999999997
No 82
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.64 E-value=4.4e-08 Score=74.75 Aligned_cols=34 Identities=29% Similarity=0.569 Sum_probs=32.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.+||+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 4799999999999999999999999999999963
No 83
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.63 E-value=8.3e-08 Score=80.85 Aligned_cols=36 Identities=19% Similarity=0.204 Sum_probs=33.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...+++|+|||+|++|++||++|++.|++|+|||+.
T Consensus 380 ~~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~ 415 (1028)
T PRK06567 380 EPTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGL 415 (1028)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccc
Confidence 346789999999999999999999999999999985
No 84
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.63 E-value=7.7e-08 Score=76.43 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=35.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG 79 (125)
....||+|||+|.+|+++|+.+++.|.+|+|+|+.+ ..||
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~-~~GG 98 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP-VAGG 98 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC-CCCC
Confidence 446799999999999999999999999999999974 3444
No 85
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.63 E-value=6.3e-08 Score=76.01 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=32.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...+||+|||||++|+++|..|+++|++|+|+|+.
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~ 71 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKGGIETFLIERK 71 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 34579999999999999999999999999999986
No 86
>PRK07236 hypothetical protein; Provisional
Probab=98.63 E-value=5.2e-08 Score=74.55 Aligned_cols=35 Identities=37% Similarity=0.624 Sum_probs=32.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
...+|+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 35789999999999999999999999999999974
No 87
>PRK07045 putative monooxygenase; Reviewed
Probab=98.62 E-value=4.8e-08 Score=74.70 Aligned_cols=34 Identities=35% Similarity=0.391 Sum_probs=32.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 4689999999999999999999999999999874
No 88
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.62 E-value=5.8e-08 Score=74.32 Aligned_cols=35 Identities=31% Similarity=0.603 Sum_probs=32.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
...||+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 45799999999999999999999999999999963
No 89
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.62 E-value=5.5e-08 Score=74.43 Aligned_cols=34 Identities=35% Similarity=0.696 Sum_probs=31.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.+||+|||||++|+++|..|++.|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 3689999999999999999999999999999863
No 90
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.62 E-value=8.5e-08 Score=76.87 Aligned_cols=33 Identities=30% Similarity=0.501 Sum_probs=31.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+||+|||||++|+++|+.|+++|++|+|+|++
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk~ 38 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCILVERH 38 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 479999999999999999999999999999996
No 91
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.62 E-value=6.7e-08 Score=70.76 Aligned_cols=38 Identities=29% Similarity=0.406 Sum_probs=33.6
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+||+|||||++|+++|..|++.|++|+|||+. . .||.+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~-~gg~~ 38 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGM-E-PGGQL 38 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEecc-C-CCcce
Confidence 58999999999999999999999999999986 3 55554
No 92
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.61 E-value=6.2e-08 Score=74.06 Aligned_cols=34 Identities=35% Similarity=0.668 Sum_probs=32.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+.||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 4789999999999999999999999999999963
No 93
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.61 E-value=6.2e-08 Score=76.15 Aligned_cols=40 Identities=30% Similarity=0.416 Sum_probs=35.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.+||+|||+|++|+.||.++++.|++|+|+|+. ...||.+
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~-~~~GG~c 42 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGR-STLGGTC 42 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-Cceeeee
Confidence 489999999999999999999999999999974 4567765
No 94
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.60 E-value=6.6e-08 Score=73.64 Aligned_cols=35 Identities=23% Similarity=0.478 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
..||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence 46899999999999999999999999999999743
No 95
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.60 E-value=6.3e-08 Score=77.43 Aligned_cols=40 Identities=33% Similarity=0.543 Sum_probs=33.6
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccce
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMG 82 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~ 82 (125)
++|+|||||++||++|..|.+.|++|++||+. ...||.+.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~-~~iGG~W~ 41 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKS-DDIGGLWR 41 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESS-SSSSGGGC
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecC-CCCCccCe
Confidence 68999999999999999999999999999997 77898874
No 96
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.60 E-value=6.3e-08 Score=67.46 Aligned_cols=37 Identities=35% Similarity=0.454 Sum_probs=29.5
Q ss_pred EEECcCHHHHHHHHHHHHcCCc-EEEEecCCCCCCccce
Q 033175 45 GIIGGGMAGLACALSWDKRGVK-STVFDTGNHGLGRRMG 82 (125)
Q Consensus 45 ~VIG~G~~Gl~~A~~l~~~g~~-V~viE~~~~~~GG~~~ 82 (125)
+|||||++||++|.+|.++|.+ |+|||++ ...||.+.
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~-~~~Gg~w~ 38 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN-DRPGGVWR 38 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESS-SSSTTHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCC-CCCCCeeE
Confidence 6999999999999999999999 9999997 56777764
No 97
>PRK06753 hypothetical protein; Provisional
Probab=98.60 E-value=6.1e-08 Score=73.54 Aligned_cols=33 Identities=30% Similarity=0.646 Sum_probs=31.0
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
+|+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence 799999999999999999999999999999743
No 98
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.60 E-value=1.7e-07 Score=70.74 Aligned_cols=64 Identities=27% Similarity=0.314 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHHH
Q 033175 51 MAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGWL 115 (125)
Q Consensus 51 ~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 115 (125)
++||+||++|+++|++|+|+|+. ..+||++.+......+..++.|.+++...+..+..++.++.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~-~r~GGr~~t~~~~~~g~~~e~G~~~~~~~~~~~~~~~~~l~ 64 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEAS-DRVGGRIRTFRFDNPGFTFELGAHRFFGMYPNLLNLIDELG 64 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESS-SSSBTTS-EEEETTTTEEEESSS-EEETTSHHHHHHHHHHT
T ss_pred ChHHHHHHHHHhCCCCEEEEEcC-CCCCcceEEecCCccceeecCCcccccccchhhHHHHHHhh
Confidence 58999999999999999999997 78999998888764356789999999877666666666543
No 99
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.59 E-value=5.5e-08 Score=74.75 Aligned_cols=34 Identities=32% Similarity=0.535 Sum_probs=31.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.+||+|||||++|+++|+.|+++|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 3689999999999999999999999999999864
No 100
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.59 E-value=6.8e-08 Score=74.24 Aligned_cols=34 Identities=26% Similarity=0.511 Sum_probs=32.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3689999999999999999999999999999974
No 101
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.59 E-value=6.5e-08 Score=75.85 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=40.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeee
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRM 85 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~ 85 (125)
+.+||+|||+|++|+.+|..|++.|++|+++|++ ...||+.++..
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n-~~yGG~~as~~ 47 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRN-PYYGGESASLN 47 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCC-CCcCccccccc
Confidence 4689999999999999999999999999999997 77899887753
No 102
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.59 E-value=1e-07 Score=75.63 Aligned_cols=35 Identities=26% Similarity=0.395 Sum_probs=32.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...+||+|||||++|+++|+.|+++|++|+|+|++
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~rG~~V~LlEk~ 38 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGRGLKVLLCEKD 38 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 34589999999999999999999999999999997
No 103
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.59 E-value=2e-07 Score=73.76 Aligned_cols=32 Identities=16% Similarity=0.192 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHHHc--CCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKR--GVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~ 73 (125)
.||+|||||++|+++|+.|++. |.+|+|+|+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~ 34 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERL 34 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 4899999999999999999997 9999999996
No 104
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.59 E-value=7.7e-08 Score=75.36 Aligned_cols=39 Identities=28% Similarity=0.416 Sum_probs=35.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.+||+|||+|++|+.+|.+|++.|++|+|+|+. ..||.+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~--~~GG~c 40 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK--KLGGTC 40 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc--ccccce
Confidence 589999999999999999999999999999985 367755
No 105
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.59 E-value=6.8e-08 Score=73.68 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=31.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHc---CCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKR---GVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~---g~~V~viE~~ 73 (125)
+..||+|||||++|+++|+.|+++ |++|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 457999999999999999999998 9999999994
No 106
>PRK06847 hypothetical protein; Provisional
Probab=98.59 E-value=8.2e-08 Score=72.84 Aligned_cols=34 Identities=26% Similarity=0.581 Sum_probs=31.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999999863
No 107
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.58 E-value=8.1e-08 Score=74.02 Aligned_cols=33 Identities=39% Similarity=0.668 Sum_probs=29.2
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
||+|||+|.+|++||+.++++|.+|+|+|+.+.
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEEEEeecc
Confidence 799999999999999999999999999999733
No 108
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.57 E-value=8.5e-08 Score=75.20 Aligned_cols=44 Identities=30% Similarity=0.413 Sum_probs=38.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceee
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTR 84 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~ 84 (125)
..++|+|||||++||++|..|.++|++|+||||. ...||.+.-.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~-~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERT-DDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEec-CCccceEeec
Confidence 3579999999999999999999999999999997 6688876443
No 109
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.57 E-value=6.6e-08 Score=73.85 Aligned_cols=35 Identities=31% Similarity=0.599 Sum_probs=32.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+.+||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 35799999999999999999999999999999863
No 110
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.57 E-value=8.5e-08 Score=74.94 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=35.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccce
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMG 82 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~ 82 (125)
++||+|||+|++|+++|.++++.|++|+|+|+. ..||.+.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~--~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEP--RVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecC--ccCceee
Confidence 479999999999999999999999999999984 4677654
No 111
>PRK06185 hypothetical protein; Provisional
Probab=98.57 E-value=9.4e-08 Score=73.39 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=32.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+||+|||||++|+++|+.|+++|++|+|+|+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~ 38 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKH 38 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 4589999999999999999999999999999986
No 112
>PRK06184 hypothetical protein; Provisional
Probab=98.57 E-value=9.8e-08 Score=75.52 Aligned_cols=34 Identities=29% Similarity=0.507 Sum_probs=32.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~ 36 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAP 36 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5789999999999999999999999999999963
No 113
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.57 E-value=7.4e-08 Score=73.23 Aligned_cols=32 Identities=34% Similarity=0.683 Sum_probs=30.4
Q ss_pred cEEEECcCHHHHHHHHHHHHcC-CcEEEEecCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRG-VKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~~ 74 (125)
||+|||||++|+++|..|+++| ++|+|+|+.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 6999999999999999999999 9999999963
No 114
>PRK06116 glutathione reductase; Validated
Probab=98.57 E-value=9.1e-08 Score=74.71 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=35.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.+||+|||||++|+++|.+|++.|++|+|||+. ..||.+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~--~~GG~c 42 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAK--RLGGTC 42 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc--chhhhh
Confidence 589999999999999999999999999999985 466654
No 115
>PRK06370 mercuric reductase; Validated
Probab=98.56 E-value=1.2e-07 Score=74.33 Aligned_cols=40 Identities=28% Similarity=0.320 Sum_probs=35.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
..+||+|||+|++|+++|.+|++.|++|+|+|+. ..||.+
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~--~~GG~c 43 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG--LLGGTC 43 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC--ccCCce
Confidence 4589999999999999999999999999999985 355554
No 116
>PRK07588 hypothetical protein; Provisional
Probab=98.56 E-value=9.6e-08 Score=73.10 Aligned_cols=34 Identities=26% Similarity=0.407 Sum_probs=31.3
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
.||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 3799999999999999999999999999998643
No 117
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.56 E-value=1.5e-07 Score=74.61 Aligned_cols=44 Identities=20% Similarity=0.169 Sum_probs=37.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHH--cCCcEEEEecCCCCCCccce
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDK--RGVKSTVFDTGNHGLGRRMG 82 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~--~g~~V~viE~~~~~~GG~~~ 82 (125)
...+++|+|||+|++|+.||..|++ .|++|+|||+. ...||...
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~-p~pgGlvr 68 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERL-PTPFGLVR 68 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecC-CCCcceEe
Confidence 3446799999999999999999987 79999999997 45777653
No 118
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.56 E-value=9.4e-08 Score=73.37 Aligned_cols=33 Identities=36% Similarity=0.570 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..||+|||||++|+++|..|+++|++|+|+|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccC
Confidence 468999999999999999999999999999996
No 119
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.55 E-value=1e-07 Score=73.43 Aligned_cols=33 Identities=36% Similarity=0.581 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 479999999999999999999999999999985
No 120
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.55 E-value=1.2e-07 Score=74.17 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=36.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcccee
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~ 83 (125)
..+||+|||||++|+.+|..|++.|++|+|+|+. . .||.+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~-~-~GG~c~~ 44 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKE-K-LGGTCLN 44 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEEEecc-c-cccceee
Confidence 3589999999999999999999999999999986 3 6776533
No 121
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.55 E-value=1.4e-07 Score=73.78 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=35.3
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcccee
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~ 83 (125)
+||+|||||++|+.+|.+|++.|++|+|+|+. ..||.+..
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~--~~GG~~~~ 41 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE--YLGGTCLN 41 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCceee
Confidence 79999999999999999999999999999983 46776543
No 122
>PTZ00058 glutathione reductase; Provisional
Probab=98.55 E-value=1.9e-07 Score=75.22 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=39.2
Q ss_pred cCCCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcccee
Q 033175 34 FTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83 (125)
Q Consensus 34 ~~~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~ 83 (125)
.+.....++||+|||+|++|..+|..+++.|.+|+|+|+. ..||.+-.
T Consensus 41 ~~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~--~~GGtCln 88 (561)
T PTZ00058 41 LKKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD--YLGGTCVN 88 (561)
T ss_pred cccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc--cccccccc
Confidence 3334445789999999999999999999999999999985 46765533
No 123
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.54 E-value=1.5e-07 Score=73.75 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||+|.+|+++|+.++++|.+|+|+|+.+
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 5799999999999999999999999999999974
No 124
>PRK07121 hypothetical protein; Validated
Probab=98.54 E-value=2.1e-07 Score=73.59 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=34.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG 79 (125)
...||+|||+|.+|+++|++++++|.+|+|+|+... .||
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~~-~gG 57 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERAAG-AGG 57 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCC-CCC
Confidence 467999999999999999999999999999999733 444
No 125
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.53 E-value=1.4e-07 Score=72.03 Aligned_cols=33 Identities=33% Similarity=0.612 Sum_probs=30.8
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
||+|||||++|+++|+.|++.|++|+|+|+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence 799999999999999999999999999998743
No 126
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.53 E-value=1.3e-07 Score=76.99 Aligned_cols=34 Identities=26% Similarity=0.473 Sum_probs=32.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+||+|||||++|+++|+.|+++|++|+|+|++
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~ 103 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVERE 103 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence 3589999999999999999999999999999997
No 127
>PRK08244 hypothetical protein; Provisional
Probab=98.53 E-value=1.3e-07 Score=74.55 Aligned_cols=34 Identities=38% Similarity=0.441 Sum_probs=31.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~ 35 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLK 35 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 3689999999999999999999999999999963
No 128
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.53 E-value=1.2e-07 Score=73.21 Aligned_cols=32 Identities=28% Similarity=0.569 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.||+|||||++|++||+.|+++|++|+|+|+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~ 32 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERK 32 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecC
Confidence 48999999999999999999999999999986
No 129
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.52 E-value=1.6e-07 Score=73.92 Aligned_cols=42 Identities=29% Similarity=0.473 Sum_probs=36.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcccee
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~ 83 (125)
..+||+|||||++|+.+|.+|++.|++|+|+|+. ..||.+..
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~--~~GG~c~~ 44 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG--KLGGTCLH 44 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc--CCCcceEc
Confidence 3589999999999999999999999999999985 46776533
No 130
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.52 E-value=1.3e-07 Score=72.51 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=31.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 4689999999999999999999999999999974
No 131
>PRK06126 hypothetical protein; Provisional
Probab=98.52 E-value=1.5e-07 Score=75.07 Aligned_cols=35 Identities=43% Similarity=0.672 Sum_probs=32.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
...+|+|||||++|+++|..|+++|++|+|||+.+
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 35789999999999999999999999999999863
No 132
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.52 E-value=1.5e-07 Score=72.45 Aligned_cols=33 Identities=33% Similarity=0.488 Sum_probs=31.4
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
++|+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 689999999999999999999999999999863
No 133
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.52 E-value=2.2e-07 Score=74.21 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=33.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
...+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~ 43 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWP 43 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 456899999999999999999999999999999974
No 134
>PLN02985 squalene monooxygenase
Probab=98.51 E-value=1.8e-07 Score=74.57 Aligned_cols=36 Identities=28% Similarity=0.411 Sum_probs=33.1
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.....||+|||||++|+++|..|+++|++|+|+|+.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 345679999999999999999999999999999986
No 135
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.51 E-value=1.7e-07 Score=72.88 Aligned_cols=36 Identities=33% Similarity=0.547 Sum_probs=32.2
Q ss_pred cEEEECcCHHHHHHHHHHHHcC-CcEEEEecCCCCCCc
Q 033175 43 RVGIIGGGMAGLACALSWDKRG-VKSTVFDTGNHGLGR 79 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~~~~~GG 79 (125)
||+|||+|.+|++||+.++++| .+|+|+|+.+. .||
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~-~gg 37 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPV-IGG 37 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCC-CCC
Confidence 7999999999999999999999 99999999743 443
No 136
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.51 E-value=1.9e-07 Score=73.60 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=35.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.+||+|||+|++|+.+|.+|++.|++|+|+|+. ...||.+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~-~~~GG~c 43 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVCVERY-STLGGVC 43 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecC-Ccccccc
Confidence 589999999999999999999999999999986 3466654
No 137
>PRK05868 hypothetical protein; Validated
Probab=98.51 E-value=1.5e-07 Score=71.93 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=31.4
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
+||+|||||++|+++|..|+++|++|+|+|+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCC
Confidence 4799999999999999999999999999998643
No 138
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.51 E-value=2.1e-07 Score=73.00 Aligned_cols=43 Identities=33% Similarity=0.580 Sum_probs=37.7
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCc-EEEEecCCCCCCccc
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVK-STVFDTGNHGLGRRM 81 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~-V~viE~~~~~~GG~~ 81 (125)
.....||+|||||++|+.+|++|.+.|.+ ++|||++ ...||.+
T Consensus 5 ~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~-~~~Gg~W 48 (443)
T COG2072 5 VATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKR-DDVGGTW 48 (443)
T ss_pred cCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEcc-CCcCCcc
Confidence 34568999999999999999999999998 9999997 5677664
No 139
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.51 E-value=1.3e-07 Score=72.27 Aligned_cols=32 Identities=34% Similarity=0.763 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence 58999999999999999999999999999985
No 140
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.50 E-value=1.6e-07 Score=72.21 Aligned_cols=31 Identities=32% Similarity=0.529 Sum_probs=30.1
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
||+|||||++|+++|++|+++|++|+|+|+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~vle~~ 32 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTVIDRQ 32 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 7999999999999999999999999999996
No 141
>PRK07538 hypothetical protein; Provisional
Probab=98.50 E-value=1.5e-07 Score=72.66 Aligned_cols=32 Identities=41% Similarity=0.775 Sum_probs=30.5
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
||+|||||++|+++|..|+++|++|+|||+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 79999999999999999999999999999963
No 142
>PRK10262 thioredoxin reductase; Provisional
Probab=98.50 E-value=2.3e-07 Score=69.36 Aligned_cols=41 Identities=17% Similarity=0.330 Sum_probs=35.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+..+||+|||||++|++||..|++.|++|++||+. ..||.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~--~~gg~~ 44 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM--EKGGQL 44 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee--cCCCce
Confidence 45789999999999999999999999999999964 355554
No 143
>PLN02463 lycopene beta cyclase
Probab=98.50 E-value=2e-07 Score=73.16 Aligned_cols=37 Identities=30% Similarity=0.403 Sum_probs=33.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
....+||+|||||++|+++|..|++.|++|+|+|+.+
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~ 61 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSP 61 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCc
Confidence 3445799999999999999999999999999999863
No 144
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.49 E-value=2.2e-07 Score=72.62 Aligned_cols=40 Identities=33% Similarity=0.402 Sum_probs=35.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
..+||+|||||++|+++|.+|++.|++|+|||++ ..||.+
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~~GG~~ 41 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKG--PLGGTC 41 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCC--ccccce
Confidence 3589999999999999999999999999999984 456654
No 145
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.49 E-value=2.4e-07 Score=72.72 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=35.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccce
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMG 82 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~ 82 (125)
.+||+|||+|++|+.+|.+|++.|++|+|+|++ ..||.+.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~--~~GG~c~ 43 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK--YWGGVCL 43 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC--CCCCcee
Confidence 489999999999999999999999999999985 3566553
No 146
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.49 E-value=7e-07 Score=70.95 Aligned_cols=34 Identities=24% Similarity=0.289 Sum_probs=31.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~ 73 (125)
...||+|||||+.|+++|++|++. |.+|+|+|+.
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~ 39 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERL 39 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence 357999999999999999999984 7899999996
No 147
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.49 E-value=1.8e-07 Score=71.64 Aligned_cols=33 Identities=36% Similarity=0.493 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHHHcC--CcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRG--VKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~~ 74 (125)
+||+|||||++|+++|..|+++| ++|+|+|+.+
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 68999999999999999999995 9999999964
No 148
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.48 E-value=2.4e-07 Score=72.58 Aligned_cols=38 Identities=29% Similarity=0.429 Sum_probs=34.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+||+|||+|++|+.+|.+|++.|++|+|+|+. . .||.+
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~-~-~GG~c 38 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERG-P-LGGTC 38 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCC-c-ccCCe
Confidence 58999999999999999999999999999986 3 56655
No 149
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.47 E-value=2.6e-07 Score=74.25 Aligned_cols=39 Identities=23% Similarity=0.430 Sum_probs=34.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.+||+|||||++|+++|.+|++.|++|+|||++ ..||.+
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~--~~GG~~ 42 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD--DFGGQI 42 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC--CCCceE
Confidence 479999999999999999999999999999985 356654
No 150
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.47 E-value=2.7e-07 Score=73.75 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=33.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+...||+|||||++|+++|+.|+++|++|+|||+.+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~ 56 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDD 56 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 356799999999999999999999999999999974
No 151
>PRK14694 putative mercuric reductase; Provisional
Probab=98.47 E-value=2.8e-07 Score=72.45 Aligned_cols=42 Identities=26% Similarity=0.513 Sum_probs=36.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccce
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMG 82 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~ 82 (125)
...+||+|||||++|+.+|.+|++.|++|+|||++ ..||.+.
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~--~~GGtc~ 45 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTLIERG--TIGGTCV 45 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc--cccccee
Confidence 34689999999999999999999999999999985 3666553
No 152
>PLN02661 Putative thiazole synthesis
Probab=98.46 E-value=2.7e-07 Score=70.37 Aligned_cols=36 Identities=36% Similarity=0.630 Sum_probs=32.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHc-CCcEEEEecCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKR-GVKSTVFDTGNH 75 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~-g~~V~viE~~~~ 75 (125)
...||+|||+|++|+++|+.|+++ |++|+|+|++..
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~ 127 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVS 127 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcc
Confidence 356999999999999999999986 899999999733
No 153
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.46 E-value=8.4e-07 Score=70.67 Aligned_cols=40 Identities=25% Similarity=0.500 Sum_probs=35.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
...+||+|||||++|+++|.+|++.|++|+|+++. .||++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~---~GG~~ 248 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER---FGGQV 248 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC---CCCee
Confidence 44689999999999999999999999999999864 66665
No 154
>PLN02976 amine oxidase
Probab=98.46 E-value=5.8e-07 Score=78.27 Aligned_cols=62 Identities=24% Similarity=0.355 Sum_probs=48.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCccccccccccccc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTV 102 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~ 102 (125)
...++|+|||+|++|+.+|++|.+.|++|+|||++ ..+||++.+.... .+..++.|..++..
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~-~~vGGri~t~~~~-~g~pvDlGas~i~G 752 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEAR-SRIGGRVYTDRSS-LSVPVDLGASIITG 752 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeec-cCCCCceeecccc-CCceeccCcEEEec
Confidence 34578999999999999999999999999999997 6688987665431 23345666666543
No 155
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.46 E-value=2.8e-07 Score=74.61 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=34.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLG 78 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~G 78 (125)
..+||+|||||++|+.||+.+++.|++|+++|+.....|
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG 41 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIG 41 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccc
Confidence 358999999999999999999999999999999743444
No 156
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.46 E-value=2.6e-07 Score=72.04 Aligned_cols=32 Identities=34% Similarity=0.609 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.||+|||||++|+.+|+.|+++|++|+|+|+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~r 34 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMR 34 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 58999999999999999999999999999975
No 157
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.45 E-value=7e-07 Score=71.17 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=42.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVN 103 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~ 103 (125)
...||+|||||++|+.+|..++.+|++|+|+|++....|....+ ..+.+-|.+|+...
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~~D~AsGTSsrs------tkLiHGGlRYl~~~ 68 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRS------TKLIHGGLRYLEQY 68 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEEEecCcccCcccCcc------ccCccchhhhhhhc
Confidence 67899999999999999999999999999999984333322211 12355567775443
No 158
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.45 E-value=1.4e-06 Score=66.18 Aligned_cols=43 Identities=35% Similarity=0.383 Sum_probs=36.6
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
...+++|+|||+|++|+++|..|++.|++|+++|+. ...+|..
T Consensus 15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~~gg~~ 57 (352)
T PRK12770 15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKL-PEPGGLM 57 (352)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCC-CCCCcee
Confidence 344679999999999999999999999999999997 4455543
No 159
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.45 E-value=2e-07 Score=72.61 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHHH----cCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDK----RGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~----~g~~V~viE~~ 73 (125)
+||+|||||++|+++|+.|++ +|++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 589999999999999999998 89999999994
No 160
>PRK13984 putative oxidoreductase; Provisional
Probab=98.45 E-value=1.8e-06 Score=69.92 Aligned_cols=64 Identities=22% Similarity=0.265 Sum_probs=44.9
Q ss_pred Hhhhhhhhhhhhhcccc--cCCCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 17 AREGQLDKKTFAQEQVT--FTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 17 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.+++++.+....+.+.. .+......++|+|||+|++|+++|..|++.|++|+|||+. ...||..
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~-~~~gG~~ 322 (604)
T PRK13984 257 WLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESL-SKPGGVM 322 (604)
T ss_pred cHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCceE
Confidence 44555554444333311 1222345689999999999999999999999999999996 4556543
No 161
>PRK06834 hypothetical protein; Provisional
Probab=98.45 E-value=2.9e-07 Score=72.90 Aligned_cols=34 Identities=29% Similarity=0.385 Sum_probs=32.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||||++|+++|+.|+++|++|+|+|+.+
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 4799999999999999999999999999999864
No 162
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.44 E-value=3.1e-07 Score=75.11 Aligned_cols=36 Identities=36% Similarity=0.605 Sum_probs=33.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.+..+|+|||||++|+++|..|+++|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 456799999999999999999999999999999963
No 163
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.44 E-value=2.1e-07 Score=68.62 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=29.3
Q ss_pred CcEEEECcCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRG-VKSTVFDTGNH 75 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~~~ 75 (125)
+|+||||+|.+|+.+|.+|++.| .+|+|+|++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEcccc
Confidence 58999999999999999999997 69999999844
No 164
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.44 E-value=3.6e-07 Score=72.76 Aligned_cols=38 Identities=21% Similarity=0.415 Sum_probs=33.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG 79 (125)
...||+|||+| +|+++|+++++.|.+|+|+|+. ...||
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~-~~~Gg 43 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEAT-DKFGG 43 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecC-CCCCc
Confidence 36799999999 9999999999999999999997 33444
No 165
>PRK07190 hypothetical protein; Provisional
Probab=98.43 E-value=3.3e-07 Score=72.59 Aligned_cols=34 Identities=32% Similarity=0.511 Sum_probs=31.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||||++|+++|+.|+++|.+|+|+|+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~ 38 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 4789999999999999999999999999999974
No 166
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.43 E-value=3.1e-07 Score=72.15 Aligned_cols=41 Identities=34% Similarity=0.591 Sum_probs=37.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccce
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMG 82 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~ 82 (125)
.++++|||||++|+++|..|++.|++|.++|+. ...||++.
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKe-psiGGrma 164 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKE-PSIGGRMA 164 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecC-CcccccHH
Confidence 568999999999999999999999999999997 66888863
No 167
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=98.43 E-value=4.2e-07 Score=69.99 Aligned_cols=35 Identities=37% Similarity=0.826 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
..+|+|||||++|+++|+.|.+.|++|+|+|+.+.
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 46899999999999999999999999999999644
No 168
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.42 E-value=3.3e-07 Score=70.76 Aligned_cols=33 Identities=42% Similarity=0.714 Sum_probs=30.2
Q ss_pred cEEEECcCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRG-VKSTVFDTGNH 75 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~~~ 75 (125)
+|+|||||++||++|..|+++| ++|+|||+.+.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~ 35 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPA 35 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCc
Confidence 6999999999999999999998 59999999643
No 169
>PTZ00367 squalene epoxidase; Provisional
Probab=98.41 E-value=4.1e-07 Score=73.31 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=32.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..+||+|||||++|+++|..|+++|++|+|+|+.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 45799999999999999999999999999999964
No 170
>PRK13748 putative mercuric reductase; Provisional
Probab=98.41 E-value=4.3e-07 Score=72.70 Aligned_cols=40 Identities=30% Similarity=0.491 Sum_probs=35.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
..+||+|||+|++|+.+|.+|++.|++|+|||++ ..||.+
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~--~~GG~c 136 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG--TIGGTC 136 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC--cceeec
Confidence 3589999999999999999999999999999985 466655
No 171
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.40 E-value=5.2e-07 Score=72.73 Aligned_cols=40 Identities=28% Similarity=0.405 Sum_probs=34.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRR 80 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~ 80 (125)
...||+|||+|.+|+++|+.++++|.+|+|+|+.. ..||.
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~-~~gG~ 47 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEP-VFGGT 47 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCC-CCCCc
Confidence 36799999999999999999999999999999973 34443
No 172
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.40 E-value=7.6e-07 Score=53.78 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=29.9
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|+|||||++|+.+|..|++.|.+|+++++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~ 31 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERS 31 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEecc
Confidence 5899999999999999999999999999997
No 173
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.40 E-value=5.4e-07 Score=69.06 Aligned_cols=32 Identities=31% Similarity=0.534 Sum_probs=30.2
Q ss_pred cEEEECcCHHHHHHHHHHHHc--CCcEEEEecCC
Q 033175 43 RVGIIGGGMAGLACALSWDKR--GVKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~ 74 (125)
||+|||||++|+++|++|++. |++|+|+|+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 799999999999999999987 99999999974
No 174
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.40 E-value=5.4e-07 Score=72.28 Aligned_cols=41 Identities=32% Similarity=0.550 Sum_probs=35.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC-CCCcc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH-GLGRR 80 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~-~~GG~ 80 (125)
...||+|||+|.+|++||..+++.|.+|+|+|+.+. ..||.
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCc
Confidence 357999999999999999999999999999999852 34553
No 175
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.40 E-value=4e-07 Score=74.34 Aligned_cols=34 Identities=26% Similarity=0.358 Sum_probs=31.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...||+|||+|.+|++||..+++.|.+|+|+|+.
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~ 67 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQ 67 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecC
Confidence 3569999999999999999999999999999985
No 176
>PRK11445 putative oxidoreductase; Provisional
Probab=98.38 E-value=4.2e-07 Score=68.96 Aligned_cols=32 Identities=34% Similarity=0.320 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+||+|||||++|+++|..|++. ++|+|+|+.+
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCC
Confidence 6899999999999999999999 9999999864
No 177
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.38 E-value=2.1e-06 Score=68.29 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=31.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~ 73 (125)
....||+|||||++|+++|+.|++. +.+|+|+|+-
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~ 40 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERL 40 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence 3456999999999999999999998 8999999993
No 178
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.38 E-value=5.5e-07 Score=62.44 Aligned_cols=31 Identities=42% Similarity=0.668 Sum_probs=29.6
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
||+|||||++|+.+|.+|++.+.+|+++|+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~ 31 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKS 31 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEecc
Confidence 6999999999999999999999999999885
No 179
>PLN02697 lycopene epsilon cyclase
Probab=98.38 E-value=6.2e-07 Score=71.76 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=32.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...+||+|||||++|+++|..|++.|++|+|+|+.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~ 140 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPD 140 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhCCCcEEEecCc
Confidence 34579999999999999999999999999999985
No 180
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.38 E-value=5e-07 Score=70.57 Aligned_cols=32 Identities=31% Similarity=0.573 Sum_probs=30.3
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+|+|||||++|+.+|+.|+++|++|+|||+.+
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp 33 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRP 33 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 79999999999999999999999999999753
No 181
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.37 E-value=7e-07 Score=72.26 Aligned_cols=34 Identities=29% Similarity=0.547 Sum_probs=31.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||+|.+|++||..+++.|.+|+|+|+..
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~ 36 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVP 36 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccC
Confidence 4699999999999999999999999999999973
No 182
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.36 E-value=4.6e-07 Score=69.43 Aligned_cols=33 Identities=30% Similarity=0.433 Sum_probs=30.1
Q ss_pred cEEEECcCHHHHHHHHHH--HHcCCcEEEEecCCC
Q 033175 43 RVGIIGGGMAGLACALSW--DKRGVKSTVFDTGNH 75 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l--~~~g~~V~viE~~~~ 75 (125)
||+|||||++|+++|++| ++.|.+|+|+|+...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~ 35 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPK 35 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 799999999999999999 778999999998633
No 183
>PRK14727 putative mercuric reductase; Provisional
Probab=98.35 E-value=7.1e-07 Score=70.44 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=37.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcccee
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~ 83 (125)
.++|++|||+|++|+.+|..|++.|.+|+|+|+. ...||.+..
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~-~~~GG~c~n 57 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGA-DVIGGCCVN 57 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CcceeEecc
Confidence 4689999999999999999999999999999986 456776643
No 184
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.35 E-value=7.9e-07 Score=70.06 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=30.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEec
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDT 72 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~ 72 (125)
.+|++|||+|++|+++|.++++.|.+|+|+|+
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 57999999999999999999999999999998
No 185
>PRK12839 hypothetical protein; Provisional
Probab=98.35 E-value=1e-06 Score=71.08 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=36.5
Q ss_pred CCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcc
Q 033175 37 PVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRR 80 (125)
Q Consensus 37 ~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~ 80 (125)
+.+...||+|||+|.+|+++|+.+++.|.+|+|+|++ ...||.
T Consensus 4 ~~~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~-~~~gg~ 46 (572)
T PRK12839 4 SMTHTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKA-STCGGA 46 (572)
T ss_pred CcCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCcc
Confidence 3445789999999999999999999999999999997 444544
No 186
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.35 E-value=7.2e-07 Score=75.95 Aligned_cols=41 Identities=29% Similarity=0.400 Sum_probs=36.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccce
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMG 82 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~ 82 (125)
.+||+|||||++|+++|..|++.|++|+|+|++ ...||.+.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~-~~~GG~~~ 203 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQ-PEAGGSLL 203 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecC-CCCCCeee
Confidence 579999999999999999999999999999997 55777653
No 187
>PLN02507 glutathione reductase
Probab=98.35 E-value=8.9e-07 Score=70.35 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=31.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEec
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDT 72 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~ 72 (125)
...+||+|||+|++|+.+|.++++.|.+|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3468999999999999999999999999999996
No 188
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.34 E-value=1e-06 Score=70.63 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=33.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
+...||+|||+|.+|++||..+++.|.+|+|+|+...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCC
Confidence 3467999999999999999999999999999999743
No 189
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.34 E-value=9e-07 Score=70.49 Aligned_cols=40 Identities=25% Similarity=0.479 Sum_probs=34.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
...+||+|||||++|++||.+|++.|++|+|++.. .||.+
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~---~GG~~ 249 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAER---IGGQV 249 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC---CCCcc
Confidence 44689999999999999999999999999999853 56654
No 190
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.34 E-value=8.8e-07 Score=71.64 Aligned_cols=39 Identities=26% Similarity=0.486 Sum_probs=34.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG 79 (125)
...||+|||+|.+|+++|+.++++|.+|+|+|+.. ..||
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~-~~gG 48 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSA-HFGG 48 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCC-CCCc
Confidence 35799999999999999999999999999999973 3444
No 191
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=8.1e-07 Score=66.62 Aligned_cols=40 Identities=35% Similarity=0.519 Sum_probs=32.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCc-EEEEecCCCCCCccc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVK-STVFDTGNHGLGRRM 81 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~-V~viE~~~~~~GG~~ 81 (125)
..+||+|||||++||+||.++++.+++ ++|+|+. ..||..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~--~~gg~~ 42 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGG--EPGGQL 42 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecC--CcCCcc
Confidence 357999999999999999999999998 7777764 344443
No 192
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.33 E-value=1.2e-06 Score=69.50 Aligned_cols=44 Identities=25% Similarity=0.309 Sum_probs=36.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHH-HcCCcEEEEecCCCCCCcccee
Q 033175 39 SSDPRVGIIGGGMAGLACALSWD-KRGVKSTVFDTGNHGLGRRMGT 83 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~-~~g~~V~viE~~~~~~GG~~~~ 83 (125)
..+++|+|||+|++|+.+|.+|. +.|++|+|||+. ...||....
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~-p~pgGLvR~ 81 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKL-PNPYGLIRY 81 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecC-CCCccEEEE
Confidence 34678999999999999999765 679999999997 557776533
No 193
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.32 E-value=1.1e-06 Score=71.80 Aligned_cols=36 Identities=22% Similarity=0.320 Sum_probs=32.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc-CCcEEEEecCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR-GVKSTVFDTGN 74 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~-g~~V~viE~~~ 74 (125)
....||+|||||++||++|+.|++. |++|+|||+.+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~ 66 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKP 66 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCC
Confidence 3467999999999999999999995 99999999864
No 194
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.32 E-value=2.2e-06 Score=68.24 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=30.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHc-C-CcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKR-G-VKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~-g-~~V~viE~~ 73 (125)
..+||+|||||++|+++|+.|++. + .+|+|+|+.
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~ 79 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERR 79 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecC
Confidence 457999999999999999999996 3 699999996
No 195
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.32 E-value=9.4e-07 Score=71.04 Aligned_cols=32 Identities=34% Similarity=0.532 Sum_probs=30.5
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
||+|||+|.+|++||..+++.|.+|+|+|+..
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~lleK~~ 32 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAVISKVY 32 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 79999999999999999999999999999973
No 196
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.31 E-value=1.2e-06 Score=71.02 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
...||+|||+|.+|++||..+++.|.+|+|+|+..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 45799999999999999999999999999999973
No 197
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.31 E-value=1.2e-06 Score=70.53 Aligned_cols=39 Identities=21% Similarity=0.411 Sum_probs=34.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRR 80 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~ 80 (125)
..||+|||+|.+|+++|..+++.|.+|+|||+. ...||.
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~-~~~gG~ 44 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ-DKVGGS 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCce
Confidence 679999999999999999999999999999997 334443
No 198
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.29 E-value=1.3e-06 Score=71.12 Aligned_cols=36 Identities=25% Similarity=0.266 Sum_probs=32.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
...||+|||+|.+|++||..+++.|.+|+|+|+...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCC
Confidence 357999999999999999999999999999999733
No 199
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.29 E-value=1.2e-06 Score=71.46 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=32.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
...||+|||+|.+|++||..+++.|.+|+|+|+..
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 35799999999999999999999999999999973
No 200
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.29 E-value=1.4e-06 Score=70.03 Aligned_cols=38 Identities=29% Similarity=0.530 Sum_probs=33.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG 79 (125)
..||+|||+|.+|+++|..++++|.+|+|||+.. ..||
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~-~~gG 44 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAP-HYGG 44 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC-CCCc
Confidence 5799999999999999999999999999999973 3443
No 201
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.29 E-value=1.3e-06 Score=70.45 Aligned_cols=34 Identities=32% Similarity=0.436 Sum_probs=31.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||+|.+|++||..+++.|.+|+|+|+..
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~ 38 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVF 38 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 4799999999999999999999999999999973
No 202
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.28 E-value=1.1e-06 Score=69.28 Aligned_cols=32 Identities=47% Similarity=0.895 Sum_probs=30.9
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.||+|||+|.+|++||..+++.|.+|+|+|+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~ 33 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPG 33 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 58999999999999999999999999999997
No 203
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.28 E-value=1.5e-06 Score=70.35 Aligned_cols=34 Identities=24% Similarity=0.405 Sum_probs=32.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...||+|||+|.+|++||..+++.|.+|+|+|+.
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~ 44 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKV 44 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence 3579999999999999999999999999999996
No 204
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=98.28 E-value=1.3e-06 Score=67.83 Aligned_cols=43 Identities=23% Similarity=0.395 Sum_probs=35.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHc------CCcEEEEecCCCCCCcccee
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKR------GVKSTVFDTGNHGLGRRMGT 83 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~------g~~V~viE~~~~~~GG~~~~ 83 (125)
...||+|||+|++||++|.+|.+. ..+|.|+|+. ...||.+-+
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKa-a~~GghtlS 123 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKA-AEVGGHTLS 123 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeec-cccCCceec
Confidence 456999999999999999999773 4699999997 567776533
No 205
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.28 E-value=1.3e-06 Score=70.01 Aligned_cols=38 Identities=32% Similarity=0.391 Sum_probs=32.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG 79 (125)
..||+|||+|.+|++||..+ +.|.+|+|+|+.....||
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~~~~gG 44 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGLFGKSG 44 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEEEEccCCCCCc
Confidence 47999999999999999999 899999999997433343
No 206
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.28 E-value=1.5e-06 Score=70.29 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=32.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
..||+|||+|.+|++||..+++.|.+|+|+|+...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEEEEccCC
Confidence 57999999999999999999999999999999733
No 207
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.27 E-value=1.4e-06 Score=71.07 Aligned_cols=34 Identities=32% Similarity=0.426 Sum_probs=32.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||+|.+|++||..+++.|.+|+|+|+..
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 5799999999999999999999999999999973
No 208
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.26 E-value=1.9e-06 Score=69.50 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=35.3
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcc
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRR 80 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~ 80 (125)
.+...||+|||+| +|+++|..+++.|.+|+|+|+. ...||.
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~-~~~GG~ 53 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKS-SYVGGS 53 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecC-CCCcCc
Confidence 3457899999999 8999999999999999999997 445554
No 209
>PRK02106 choline dehydrogenase; Validated
Probab=98.24 E-value=1.4e-06 Score=69.94 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=32.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHH-cCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDK-RGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~-~g~~V~viE~~~ 74 (125)
.+|+||||+|.+|+.+|.+|++ .|++|+|+|+++
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 4799999999999999999999 799999999984
No 210
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.24 E-value=1.8e-06 Score=70.70 Aligned_cols=43 Identities=33% Similarity=0.545 Sum_probs=36.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcccee
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~ 83 (125)
.+||+|||+|++|..+|..+++.|.+|+|||++....||-+-.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn 158 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN 158 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence 5799999999999999999999999999999743356776533
No 211
>PRK06996 hypothetical protein; Provisional
Probab=98.24 E-value=1.4e-06 Score=67.03 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=30.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcC----CcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRG----VKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g----~~V~viE~~ 73 (125)
..+||+|||||++|+++|+.|+++| ++|+|+|+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~ 47 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAR 47 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCC
Confidence 3579999999999999999999987 479999996
No 212
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.24 E-value=1.7e-06 Score=70.34 Aligned_cols=35 Identities=34% Similarity=0.532 Sum_probs=32.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~~ 75 (125)
..||+|||+|.+|++||..+++. |.+|+|+|+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 57999999999999999999998 999999999743
No 213
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.23 E-value=2.1e-06 Score=69.07 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=32.2
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
.+...||+|||+|.+|++||..++ .|.+|+|+|+.+.
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~~ 42 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDTL 42 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccCC
Confidence 345689999999999999999996 5999999999743
No 214
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=98.23 E-value=1.5e-06 Score=66.81 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=32.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+...||+|||+|.+|.++|+.|++.|++|.|+||+
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 34568999999999999999999999999999995
No 215
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.23 E-value=1.6e-06 Score=68.93 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEec
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDT 72 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~ 72 (125)
.+||+|||+|++|+.+|.+|++.|++|+|+|+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 47999999999999999999999999999996
No 216
>PLN02546 glutathione reductase
Probab=98.23 E-value=2.1e-06 Score=69.15 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=31.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEec
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDT 72 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~ 72 (125)
.++||+|||+|++|+.+|..+++.|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 357999999999999999999999999999996
No 217
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.23 E-value=2.3e-06 Score=73.99 Aligned_cols=41 Identities=29% Similarity=0.501 Sum_probs=35.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRR 80 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~ 80 (125)
+...||+|||+|.+|++||..+++.|.+|+|+|+.+ ..||.
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~-~~GG~ 447 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEA-KLGGN 447 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccC-CCCCc
Confidence 456799999999999999999999999999999974 45554
No 218
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.22 E-value=3.2e-06 Score=68.34 Aligned_cols=42 Identities=29% Similarity=0.381 Sum_probs=35.8
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcc
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRR 80 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~ 80 (125)
.+...||+|||+|.+|+++|+.++++|.+|+|||+. ...||.
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~-~~~gg~ 50 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKD-PVFGGT 50 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecC-CCCCcc
Confidence 344689999999999999999999999999999997 334443
No 219
>PRK08275 putative oxidoreductase; Provisional
Probab=98.22 E-value=2e-06 Score=69.14 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=32.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTGNH 75 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~~ 75 (125)
...||+|||+|.+|++||..+++. |.+|+|+|+...
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 347999999999999999999987 689999999744
No 220
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.21 E-value=2.1e-06 Score=70.31 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=32.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
..||+|||+|.+|++||..+++.|.+|+|+|+.+.
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 46999999999999999999999999999999633
No 221
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.21 E-value=2.6e-06 Score=67.61 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=31.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHc-CCcEEEEec
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKR-GVKSTVFDT 72 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~-g~~V~viE~ 72 (125)
..+||+|||+|++|..+|.++++. |.+|+|+|+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~ 35 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDV 35 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEec
Confidence 358999999999999999999997 999999997
No 222
>PLN02815 L-aspartate oxidase
Probab=98.20 E-value=3.1e-06 Score=68.70 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=32.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
....||+|||+|.+|++||..+++.| +|+|+|+...
T Consensus 27 ~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~ 62 (594)
T PLN02815 27 TKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEP 62 (594)
T ss_pred ccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCC
Confidence 34579999999999999999999999 9999999743
No 223
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.19 E-value=2.6e-06 Score=68.79 Aligned_cols=34 Identities=29% Similarity=0.457 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcC---CcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRG---VKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g---~~V~viE~~~ 74 (125)
..||+|||+|.+|++||..+++.| .+|+|+|+..
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 468999999999999999999998 8999999973
No 224
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.19 E-value=2e-06 Score=66.44 Aligned_cols=29 Identities=34% Similarity=0.533 Sum_probs=26.0
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEe
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFD 71 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE 71 (125)
||+|||||++|+.||+.+++.|.+|+|+-
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 79999999999999999999999999994
No 225
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.18 E-value=2.8e-06 Score=66.64 Aligned_cols=37 Identities=32% Similarity=0.576 Sum_probs=32.8
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+|+|||+|++|+.+|.+|++.|.+|+|+|++ . .||.+
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-~-~GG~c 38 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-D-LGGTC 38 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-c-ccccC
Confidence 6999999999999999999999999999986 2 45544
No 226
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.16 E-value=3.1e-06 Score=68.30 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcC--CcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRG--VKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~~ 74 (125)
..||+|||+|.+|++||..+++.| .+|+|+|+..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~ 38 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH 38 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 469999999999999999999874 8999999973
No 227
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.16 E-value=1.8e-06 Score=66.76 Aligned_cols=34 Identities=32% Similarity=0.650 Sum_probs=30.0
Q ss_pred EEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCc
Q 033175 45 GIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGR 79 (125)
Q Consensus 45 ~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG 79 (125)
+|||||++|++||+.|+++|++|+|+|+++ ..|+
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~-~~G~ 34 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNK-KIGK 34 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCc-cccc
Confidence 699999999999999999999999999973 3443
No 228
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.15 E-value=3.6e-06 Score=66.64 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
..||+|||+|.+|++||..+++.|. |+|+|+.+.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPV 35 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCC
Confidence 3689999999999999999999997 999999743
No 229
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.15 E-value=3.2e-06 Score=66.12 Aligned_cols=34 Identities=32% Similarity=0.474 Sum_probs=30.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
..||+|||+|.+|++||..++ .|.+|+|+|+.+.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~ 37 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKL 37 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEEEecCCC
Confidence 479999999999999999985 7999999999743
No 230
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.15 E-value=5.6e-06 Score=66.92 Aligned_cols=41 Identities=27% Similarity=0.365 Sum_probs=35.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
...||+|||+|.+|+++|..++++|++|+|+|+. ...||..
T Consensus 15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~-~~~gg~~ 55 (578)
T PRK12843 15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERT-EYVGGTT 55 (578)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC-CCCCCcc
Confidence 3679999999999999999999999999999996 4455543
No 231
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.15 E-value=3.5e-06 Score=65.81 Aligned_cols=33 Identities=36% Similarity=0.596 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+||+|||+|++|+++|+.|+++|++|+|+|++
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~ 34 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAKG 34 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEECC
Confidence 479999999999999999999999999999986
No 232
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.14 E-value=3.8e-06 Score=66.54 Aligned_cols=33 Identities=36% Similarity=0.453 Sum_probs=31.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|++|||+|++|+.+|..+++.|++|+++|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 479999999999999999999999999999973
No 233
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.13 E-value=4.4e-06 Score=65.80 Aligned_cols=44 Identities=27% Similarity=0.398 Sum_probs=37.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceee
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTR 84 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~ 84 (125)
..+|++|||+|++|..+|.++++.|.+|.++|+. ...||-|-..
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~-~~lGGtCln~ 46 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKG-ERLGGTCLNV 46 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEEEeec-CCcCceEEee
Confidence 4689999999999999999999999999999997 3577766443
No 234
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.11 E-value=4.5e-06 Score=67.52 Aligned_cols=34 Identities=26% Similarity=0.395 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~ 74 (125)
..||+|||+|.+|++||..+++. |.+|+|+|+..
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~ 39 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY 39 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 46999999999999999999987 47999999973
No 235
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=98.11 E-value=3.6e-06 Score=70.03 Aligned_cols=32 Identities=38% Similarity=0.441 Sum_probs=30.2
Q ss_pred cEEEECcCHHHHHHHHHHHHc--CCcEEEEecCC
Q 033175 43 RVGIIGGGMAGLACALSWDKR--GVKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~ 74 (125)
+|+|||||++|+++|..|++. |++|+|+|+.+
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~ 35 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNR 35 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 699999999999999999998 89999999974
No 236
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.10 E-value=5.1e-06 Score=66.20 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
..||+|||+|.+|++||..+++ |.+|+|+|+.+.
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccCC
Confidence 4699999999999999999976 899999999743
No 237
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.10 E-value=5.1e-06 Score=67.65 Aligned_cols=32 Identities=34% Similarity=0.602 Sum_probs=29.8
Q ss_pred cEEEECcCHHHHHHHHHHH----HcCCcEEEEecCC
Q 033175 43 RVGIIGGGMAGLACALSWD----KRGVKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~----~~g~~V~viE~~~ 74 (125)
||+|||+|.+|++||..++ +.|.+|+|+|+..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 7999999999999999998 6799999999964
No 238
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.09 E-value=5.6e-06 Score=64.65 Aligned_cols=34 Identities=29% Similarity=0.444 Sum_probs=31.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcC--CcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRG--VKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~ 73 (125)
..+||+|||||+.|+++|+.|++.+ ++|+|+|+.
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~ 37 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKE 37 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEcc
Confidence 3579999999999999999999998 999999996
No 239
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.08 E-value=6.1e-06 Score=64.95 Aligned_cols=38 Identities=37% Similarity=0.536 Sum_probs=33.9
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
++++|||+|++|+.+|..+++.|.+|+|+|++ . .||.+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-~-~gG~c 39 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-G-LGGAA 39 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-C-CCCcc
Confidence 47999999999999999999999999999986 3 56655
No 240
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.08 E-value=5.6e-06 Score=69.97 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=32.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
...||+|||+|.+|+++|..+++.|.+|+|+|+...
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 357999999999999999999999999999999743
No 241
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.07 E-value=6.6e-06 Score=66.12 Aligned_cols=33 Identities=27% Similarity=0.294 Sum_probs=31.2
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+||+|||+|++|+.+|+.|+++|++|++||++.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~ 33 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGA 33 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccC
Confidence 589999999999999999999999999999973
No 242
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.07 E-value=5.8e-06 Score=62.52 Aligned_cols=33 Identities=39% Similarity=0.853 Sum_probs=31.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
++||+|||||++|++|+.+|.++|.++.|+-++
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCC
Confidence 579999999999999999999999999999985
No 243
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.07 E-value=6.6e-06 Score=66.59 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~ 74 (125)
..||+|||+|.+|++||..+++. |.+|+|+|+..
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~ 38 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVY 38 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 46899999999999999999987 58999999973
No 244
>PRK09897 hypothetical protein; Provisional
Probab=98.05 E-value=1.3e-05 Score=64.32 Aligned_cols=32 Identities=19% Similarity=0.475 Sum_probs=29.0
Q ss_pred CcEEEECcCHHHHHHHHHHHHcC--CcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRG--VKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~ 73 (125)
++|+|||+|++|+++|.+|.+++ .+|+|||++
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~ 35 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA 35 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC
Confidence 57999999999999999998864 589999996
No 245
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.03 E-value=4.8e-06 Score=66.50 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=30.2
Q ss_pred cEEEECcCHHHHHHHHHHHHcC-CcEEEEecCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRG-VKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~~ 74 (125)
|+||||+|.+|+.+|.+|++.| ++|+|+|+++
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 7999999999999999999998 7999999984
No 246
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.03 E-value=9.2e-06 Score=65.12 Aligned_cols=34 Identities=35% Similarity=0.479 Sum_probs=30.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
...||+|||+|.+|++||..+++. .+|+|+|+..
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~ 40 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGP 40 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccC
Confidence 357999999999999999999886 8999999973
No 247
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.02 E-value=8.5e-06 Score=65.94 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=30.2
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..||+|||+|.+|++||+.+++. .+|+|+|+..
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 46999999999999999999986 8999999973
No 248
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.01 E-value=8.4e-06 Score=66.27 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=29.5
Q ss_pred EEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 44 v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
|+|||+|.+|++||..+++.|.+|+|+|+..
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 6999999999999999999999999999974
No 249
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.00 E-value=1.1e-05 Score=65.01 Aligned_cols=36 Identities=31% Similarity=0.473 Sum_probs=33.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
..+||+|||+|.+||++|..+++.|.+|+|+|+.+.
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 457999999999999999999999999999999633
No 250
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=97.99 E-value=9.3e-06 Score=61.48 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=32.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
....+|+|||+|+-|+++|+.|+++|.+++++|+-
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf 39 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQF 39 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEecc
Confidence 34578999999999999999999999999999996
No 251
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.97 E-value=1.1e-05 Score=64.30 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=30.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
....||+|||+|.+|++||..++ +.+|+|+|+...
T Consensus 7 ~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 7 ILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred CCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 34579999999999999999997 579999999744
No 252
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.97 E-value=1.5e-05 Score=60.79 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=35.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC-CCCccc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH-GLGRRM 81 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~-~~GG~~ 81 (125)
...||+|||+|++||.+|..|+..|++|+|+|+... ..||+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 357999999999999999999999999999998533 456653
No 253
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=97.97 E-value=3.6e-06 Score=62.68 Aligned_cols=33 Identities=24% Similarity=0.562 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcC------CcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRG------VKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g------~~V~viE~~ 73 (125)
.++|+|||||+.|+++||+|++++ ..|++||..
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~ 48 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESK 48 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeec
Confidence 478999999999999999999987 799999986
No 254
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.97 E-value=1.3e-05 Score=62.30 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=33.5
Q ss_pred CCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 37 PVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 37 ~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
...+.++|+|||||.+|+.+|..|.+.+.+|+|||+.+.
T Consensus 6 ~~~~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 6 ARLKKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNH 44 (424)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCC
Confidence 345567999999999999999999877899999998644
No 255
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.96 E-value=1.5e-05 Score=61.39 Aligned_cols=36 Identities=28% Similarity=0.498 Sum_probs=31.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCC--cEEEEecCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGV--KSTVFDTGNH 75 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~--~V~viE~~~~ 75 (125)
..++|+|||||++|+++|..|++.|. +|+|+++.+.
T Consensus 2 ~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~ 39 (396)
T PRK09754 2 KEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERH 39 (396)
T ss_pred CcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCC
Confidence 34689999999999999999999886 7999998633
No 256
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.95 E-value=1.1e-05 Score=64.90 Aligned_cols=36 Identities=25% Similarity=0.381 Sum_probs=33.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
...+|+||||+|.+|..+|.+|++.|.+|+|+|++.
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 446899999999999999999999999999999973
No 257
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=97.93 E-value=2.1e-05 Score=60.11 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=47.1
Q ss_pred HHHHHHHHcCCcEEEEecCCCCCCccceeeecCCCcccccccccccccCchHHHHHHHHH
Q 033175 55 ACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIGPQPLIFDHAAQFFTVNDSRFRELVDGW 114 (125)
Q Consensus 55 ~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (125)
+||++|+++|++|+|+|+. ...||++.+.........+|.|.+++...++.+.++++++
T Consensus 1 ~AA~~L~~~G~~v~vlEa~-~~~GG~~~t~~~~g~~~~~d~G~~~~~~~~~~~~~l~~~l 59 (419)
T TIGR03467 1 SAAVELARAGARVTLFEAR-PRLGGRARSFEDGGLGQTIDNGQHVLLGAYTNLLALLRRI 59 (419)
T ss_pred ChHHHHHhCCCceEEEecC-CCCCCceeEeecCCCCcceecCCEEEEcccHHHHHHHHHh
Confidence 4799999999999999997 7799999887765434458899988877667766666654
No 258
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.90 E-value=2.1e-05 Score=53.35 Aligned_cols=37 Identities=38% Similarity=0.561 Sum_probs=29.8
Q ss_pred EEECcCHHHHHHHHHHHHc-----CCcEEEEecCCCCCCccc
Q 033175 45 GIIGGGMAGLACALSWDKR-----GVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 45 ~VIG~G~~Gl~~A~~l~~~-----g~~V~viE~~~~~~GG~~ 81 (125)
+|||+|++|++++.+|.++ ..+|+|||+.+.+.|+..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~ 42 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAY 42 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccC
Confidence 5999999999999999988 469999999644334333
No 259
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.86 E-value=2.3e-05 Score=61.03 Aligned_cols=33 Identities=27% Similarity=0.477 Sum_probs=29.5
Q ss_pred cEEEECcCHHHHHHHHHHHHcC--CcEEEEecCCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRG--VKSTVFDTGNH 75 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~~~ 75 (125)
+|+|||||++|+++|..|++.+ .+|+|||+.+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCc
Confidence 7999999999999999999875 58999999743
No 260
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.86 E-value=2.7e-05 Score=63.29 Aligned_cols=32 Identities=34% Similarity=0.480 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+||+|||+|++|+.+|..+++.|.+|+|+|+.
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 58999999999999999999999999999986
No 261
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.86 E-value=2.1e-05 Score=61.98 Aligned_cols=31 Identities=32% Similarity=0.571 Sum_probs=26.6
Q ss_pred cEEEECcCHHHHHHHHHHHHcC---CcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRG---VKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g---~~V~viE~~ 73 (125)
||+|||||++|..+|..|++.+ ++|+|||+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 6999999999999999999998 899999986
No 262
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.85 E-value=2.4e-05 Score=61.02 Aligned_cols=32 Identities=47% Similarity=0.798 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|++|||+|++|+++|+.++++|++|+|+|++
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~ 32 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAG 32 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCC
Confidence 48999999999999999999999999999986
No 263
>PLN02785 Protein HOTHEAD
Probab=97.80 E-value=2.9e-05 Score=62.98 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=31.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..+|+||||+|.+|+.+|.+|++ +.+|+|+|++.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 35899999999999999999999 68999999984
No 264
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.80 E-value=3.3e-05 Score=60.37 Aligned_cols=33 Identities=18% Similarity=0.453 Sum_probs=29.7
Q ss_pred CcEEEECcCHHHHHHHHHHHHc--CCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKR--GVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~ 74 (125)
.+|+|||||++|+.+|..|++. +.+|+|+|+.+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 3799999999999999999886 67999999974
No 265
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.77 E-value=5.8e-05 Score=58.65 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=32.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcC--CcEEEEecCCCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRG--VKSTVFDTGNHGL 77 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~~~~~ 77 (125)
.++|+|||||++|+.+|..|.++- .+|+++|+++.+.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl 41 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL 41 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc
Confidence 578999999999999999999974 8899999985544
No 266
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.76 E-value=3.1e-05 Score=60.34 Aligned_cols=30 Identities=30% Similarity=0.657 Sum_probs=28.2
Q ss_pred EECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 46 IIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 46 VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
|||+|.+|++||..+++.|.+|+|+||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRAGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 799999999999999999999999999743
No 267
>PRK07846 mycothione reductase; Reviewed
Probab=97.75 E-value=4.5e-05 Score=59.92 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=30.0
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
+|++|||+|++|..+|.+ ..|.+|+|+|+. ..||-+
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~--~~GGtC 37 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAIVEKG--TFGGTC 37 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEEEeCC--CCCCcc
Confidence 799999999999998876 459999999985 356654
No 268
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=97.74 E-value=4.1e-05 Score=59.11 Aligned_cols=41 Identities=29% Similarity=0.463 Sum_probs=36.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
..+|++|||+|+.|-.+|.++++.|++..++|++ ...||.+
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr-~~LGGTc 78 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKR-GTLGGTC 78 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEecc-CccCcee
Confidence 4689999999999999999999999999999996 6677665
No 269
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=3.9e-05 Score=58.18 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=31.2
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
..|.|||+|++|..+||+++++|.+|.++|.++.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~ 37 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPV 37 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccc
Confidence 4689999999999999999999999999998733
No 270
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.69 E-value=6.1e-05 Score=59.15 Aligned_cols=39 Identities=15% Similarity=0.132 Sum_probs=31.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcccee
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGT 83 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~ 83 (125)
.+|++|||+|++|..+|.+ ..|.+|+++|+. ..||.+-.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~--~~GGtC~n 40 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG--TFGGTCLN 40 (452)
T ss_pred CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC--CCCCeeec
Confidence 4799999999999988654 469999999985 35665533
No 271
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.69 E-value=6.8e-05 Score=56.96 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=34.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcc
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRR 80 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~ 80 (125)
.++++|||+|..|+.+|..|+++|++|+++|+. ...+++
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~-~~~~~~ 174 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAA-DRLGGQ 174 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcc-cccchh
Confidence 478999999999999999999999999999997 445444
No 272
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=97.64 E-value=6.4e-05 Score=59.00 Aligned_cols=42 Identities=26% Similarity=0.432 Sum_probs=36.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~ 81 (125)
.+.+|++|||+|.-||+||.+|++-|.+|.++|++ +..||..
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~vlerr-hv~gGaa 53 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAVLERR-HVIGGAA 53 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEEEEEe-eecCcce
Confidence 45789999999999999999999999999999997 5555544
No 273
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.57 E-value=0.00025 Score=55.85 Aligned_cols=40 Identities=25% Similarity=0.244 Sum_probs=31.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcC---CcEEEEecCCCCCCccc
Q 033175 42 PRVGIIGGGMAGLACALSWDKRG---VKSTVFDTGNHGLGRRM 81 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g---~~V~viE~~~~~~GG~~ 81 (125)
++|+|||+|++|+++|.+|.+.- ..|.|||+.+....|..
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 68999999999999999998862 23999999744333443
No 274
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=97.55 E-value=0.00034 Score=53.58 Aligned_cols=34 Identities=32% Similarity=0.460 Sum_probs=30.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHc----CCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKR----GVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~----g~~V~viE~~ 73 (125)
..++|+|||||..|++.|+.|.++ |++|+|+|++
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd 122 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD 122 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence 367999999999999999998774 7999999996
No 275
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.50 E-value=0.0004 Score=55.08 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=37.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHHc----CCcEEEEecCCCCCCccceeeecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKR----GVKSTVFDTGNHGLGRRMGTRMIG 87 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~----g~~V~viE~~~~~~GG~~~~~~~~ 87 (125)
++++=|||+|+++|++|.+|.+. |.+|+|+|+. ...||.+.+....
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~-~~~GGsldg~g~~ 51 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEEL-DVPGGSLDGAGDP 51 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCC-CCCCCcccCCCCC
Confidence 46788999999999999999996 5699999997 6677776554443
No 276
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.49 E-value=0.00022 Score=56.26 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=31.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...++|+|||+|.+|+++|..|+++|++|+++|+.
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34568999999999999999999999999999975
No 277
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.48 E-value=0.0001 Score=59.00 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=30.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+||+|||||.+|+.||...++.|.+++++=-+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 489999999999999999999999999987664
No 278
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.47 E-value=0.00022 Score=54.97 Aligned_cols=34 Identities=35% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++|+|||+|.+|+.+|..|++.|.+|+|+|+.+
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~ 177 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELAA 177 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4689999999999999999999999999999863
No 279
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.47 E-value=0.00015 Score=55.08 Aligned_cols=33 Identities=24% Similarity=0.537 Sum_probs=28.5
Q ss_pred cEEEECcCHHHHHHHHHHHHc---CCcEEEEecCCC
Q 033175 43 RVGIIGGGMAGLACALSWDKR---GVKSTVFDTGNH 75 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~---g~~V~viE~~~~ 75 (125)
+|+|||||++|+.+|.+|.++ +.+|+|||+.+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 589999999999999999643 689999998644
No 280
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.46 E-value=0.00022 Score=55.05 Aligned_cols=41 Identities=34% Similarity=0.355 Sum_probs=33.0
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecCCCCCCcc
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTGNHGLGRR 80 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~~~~GG~ 80 (125)
...++|+|||+|++|+-+|++|-++ +++|.|+|+.+. ..|.
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv-PFGL 60 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV-PFGL 60 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc-ccce
Confidence 3345899999999999999998884 689999999743 4443
No 281
>PRK05866 short chain dehydrogenase; Provisional
Probab=97.44 E-value=0.00051 Score=50.90 Aligned_cols=72 Identities=17% Similarity=0.223 Sum_probs=56.5
Q ss_pred CCCCCCcchHHHHHhHHhhhhhhhhhhhhcccccCCCCCCCCcEEEECc-CHHHHHHHHHHHHcCCcEEEEecC
Q 033175 1 MLKNPLQETAEDRRMAAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGG-GMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VIG~-G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
|-++|+.-+.+......+.++.......+..... .....++.++|+|| |-.|..+|..|+++|++|+++.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~ 73 (293)
T PRK05866 1 MSKRPLRRLTDQLTLAGMRPPISPQLLINRPPRQ-PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARR 73 (293)
T ss_pred CCcchHHHHHHHHHHhccCCCCCchhhcCCCCCC-CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 7889998888888888888888777776553332 22344577999996 777999999999999999999885
No 282
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.41 E-value=0.00022 Score=48.44 Aligned_cols=31 Identities=26% Similarity=0.422 Sum_probs=29.6
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|+|+|..|.++|..|+++|++|+++.+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEecc
Confidence 5899999999999999999999999999986
No 283
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.39 E-value=0.00011 Score=58.72 Aligned_cols=39 Identities=38% Similarity=0.709 Sum_probs=34.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLG 78 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~G 78 (125)
.++||+|||||.+|..||.-++-+|.+|.++|++....|
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~TRGLktaLVE~~DF~SG 104 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAATRGLKTALVEAGDFASG 104 (680)
T ss_pred CcccEEEECCCccCcceeehhhcccceeEEEecccccCC
Confidence 458999999999999999999999999999999844333
No 284
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.36 E-value=0.00037 Score=53.33 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=29.0
Q ss_pred CcEEEECcCHHHHHHHHHHHHc--CCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKR--GVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~~ 74 (125)
++|+|||+|++|+.+|..|.+. ..+|+|+++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 5899999999999999999885 45899999864
No 285
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.36 E-value=0.00034 Score=55.11 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|.+|+.+|..|++.|.+|+++|+.+
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~ 213 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD 213 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4689999999999999999999999999999863
No 286
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.35 E-value=0.00043 Score=54.00 Aligned_cols=34 Identities=47% Similarity=0.707 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++|+|||+|.+|+.+|..+++.|.+|+++|+.+
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~ 190 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS 190 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4689999999999999999999999999999863
No 287
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.34 E-value=0.0004 Score=53.12 Aligned_cols=34 Identities=29% Similarity=0.513 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~ 174 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA 174 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 4689999999999999999999999999999863
No 288
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.33 E-value=0.0004 Score=48.30 Aligned_cols=31 Identities=29% Similarity=0.586 Sum_probs=27.6
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||+|..|...|..++..|++|+++|.+
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~ 31 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRS 31 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 4899999999999999999999999999986
No 289
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=97.32 E-value=0.00026 Score=57.47 Aligned_cols=38 Identities=21% Similarity=0.351 Sum_probs=33.5
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHc-CCcEEEEecCCC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKR-GVKSTVFDTGNH 75 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~-g~~V~viE~~~~ 75 (125)
....+|.||||||-+|+.+|.+|++. .++|+|+|++..
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~ 92 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGD 92 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCC
Confidence 45678999999999999999999997 589999999733
No 290
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.32 E-value=0.00045 Score=54.34 Aligned_cols=47 Identities=19% Similarity=0.229 Sum_probs=34.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeec
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMI 86 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~ 86 (125)
+..+||+|+|.|+.-..+|..|++.|.+|+.+|++ ..-||.+++...
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n-~yYGg~~asl~l 48 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRN-DYYGGEWASLNL 48 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SS-SSSCGGG-EE-H
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCC-CCcCCchhcccH
Confidence 34689999999999999999999999999999997 667887766553
No 291
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.29 E-value=0.00023 Score=56.36 Aligned_cols=32 Identities=44% Similarity=0.601 Sum_probs=29.5
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
||+|||+|++||++|..|.+. ++|+|+-|.+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~ 40 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPL 40 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCC
Confidence 899999999999999999988 99999999633
No 292
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.29 E-value=0.00047 Score=54.48 Aligned_cols=36 Identities=33% Similarity=0.522 Sum_probs=32.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
-+++++|||||..|+..|..+++.|.+|||+|+.+.
T Consensus 172 lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~ 207 (454)
T COG1249 172 LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDR 207 (454)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCC
Confidence 357899999999999999999999999999999733
No 293
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=97.29 E-value=0.00096 Score=54.78 Aligned_cols=36 Identities=33% Similarity=0.576 Sum_probs=29.5
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcE-EEEecC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKS-TVFDTG 73 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V-~viE~~ 73 (125)
....-+|+|||||.+|.++|++|++.|+++ ++.|+.
T Consensus 36 ~~~~A~vvViggG~~g~~~~yhlak~g~k~avlle~~ 72 (856)
T KOG2844|consen 36 LPSTADVVVIGGGSLGCSTAYHLAKRGMKGAVLLERS 72 (856)
T ss_pred CCCcccEEEEcCCchhHHHHHHHHHccccceEEEeee
Confidence 344579999999999999999999999984 445554
No 294
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.28 E-value=0.00049 Score=54.10 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=31.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 199 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE 199 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4689999999999999999999999999999863
No 295
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.27 E-value=0.00051 Score=53.82 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++++|||+|.+|+.+|..|++.|.+|+++|+.+
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 203 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD 203 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 4689999999999999999999999999999863
No 296
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.27 E-value=0.00045 Score=47.93 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=30.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+++|+|||+|.+++.+|..|++.|.+|+++-|.
T Consensus 165 ~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~ 199 (203)
T PF13738_consen 165 FKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRS 199 (203)
T ss_dssp CTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS
T ss_pred cCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecC
Confidence 44689999999999999999999999999999886
No 297
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.27 E-value=0.00051 Score=54.27 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|..|+.+|..+++.|.+|+|+|+.+
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 207 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFD 207 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence 3689999999999999999999999999999863
No 298
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.24 E-value=0.00058 Score=53.87 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|.+|+.+|..+++.|.+|+++|+.+
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~ 207 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLD 207 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4789999999999999999999999999999863
No 299
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.23 E-value=0.00059 Score=53.53 Aligned_cols=34 Identities=24% Similarity=0.434 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++++|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 205 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP 205 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4689999999999999999999999999999863
No 300
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.23 E-value=0.00048 Score=52.43 Aligned_cols=37 Identities=27% Similarity=0.491 Sum_probs=32.5
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCcc
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRR 80 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~ 80 (125)
.|+|||+|++||+++..+...|-.|+++|+. ...||+
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~-~s~GGN 47 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKA-GSIGGN 47 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEecc-CCcCCc
Confidence 5999999999999999999998889999996 445554
No 301
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.23 E-value=0.002 Score=50.96 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=30.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~ 73 (125)
...||++||||+.|.++++.|++- .++|.|+||-
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl 37 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERL 37 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEec
Confidence 357999999999999999999985 6899999995
No 302
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.22 E-value=0.00063 Score=53.43 Aligned_cols=34 Identities=24% Similarity=0.546 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++++|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 199 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSD 199 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence 3689999999999999999999999999999863
No 303
>PRK06370 mercuric reductase; Validated
Probab=97.21 E-value=0.00063 Score=53.46 Aligned_cols=34 Identities=35% Similarity=0.565 Sum_probs=31.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 204 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP 204 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4689999999999999999999999999999863
No 304
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=97.20 E-value=0.00064 Score=53.30 Aligned_cols=34 Identities=29% Similarity=0.398 Sum_probs=31.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~ 208 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD 208 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4689999999999999999999999999999863
No 305
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.00043 Score=52.95 Aligned_cols=34 Identities=41% Similarity=0.572 Sum_probs=31.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEec
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDT 72 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~ 72 (125)
.-.+|.+|||||-+||+||..++..|.+|.++|-
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf 50 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDF 50 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence 4468999999999999999999999999999995
No 306
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.20 E-value=6.6e-05 Score=54.01 Aligned_cols=33 Identities=30% Similarity=0.537 Sum_probs=29.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~ 73 (125)
..||+|||+|-+||++||..+++ ..+|.|||..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~S 110 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESS 110 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEee
Confidence 35899999999999999999865 5799999986
No 307
>PRK07846 mycothione reductase; Reviewed
Probab=97.19 E-value=0.0007 Score=53.25 Aligned_cols=34 Identities=26% Similarity=0.440 Sum_probs=31.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|..|+.+|..|++.|.+|+++++.+
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~ 199 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSG 199 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 4689999999999999999999999999999863
No 308
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.18 E-value=0.00074 Score=52.43 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 4689999999999999999999999999999863
No 309
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.18 E-value=0.00075 Score=53.05 Aligned_cols=34 Identities=26% Similarity=0.478 Sum_probs=31.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|.+|+.+|..+.+.|.+|+++++.+
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 203 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP 203 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4689999999999999999999999999999863
No 310
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.17 E-value=0.00069 Score=52.99 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++++|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 181 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSD 181 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEeccc
Confidence 4689999999999999999999999999999863
No 311
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.15 E-value=0.00047 Score=48.19 Aligned_cols=31 Identities=26% Similarity=0.455 Sum_probs=26.2
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||.|..|+.+|..|+++|++|+.+|.+
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCC
Confidence 6899999999999999999999999999986
No 312
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.14 E-value=0.00082 Score=52.90 Aligned_cols=33 Identities=24% Similarity=0.343 Sum_probs=31.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+++++|||+|.+|+.+|..|++.|.+|+++|+.
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~ 204 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFL 204 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecC
Confidence 468999999999999999999999999999985
No 313
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=97.12 E-value=0.0011 Score=44.20 Aligned_cols=31 Identities=26% Similarity=0.334 Sum_probs=29.2
Q ss_pred EEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 44 v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
|+|+|+|..|...|++|++.|++|+++.+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999864
No 314
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.12 E-value=0.00089 Score=52.48 Aligned_cols=34 Identities=38% Similarity=0.729 Sum_probs=31.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~ 202 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGD 202 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 4789999999999999999999999999999863
No 315
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.12 E-value=0.0011 Score=56.16 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=30.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHc----CCcEEEEecCCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKR----GVKSTVFDTGNHG 76 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~----g~~V~viE~~~~~ 76 (125)
..+|+|||+|++|+.+|..|.++ +++|+||++.+..
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~ 42 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI 42 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence 35899999999999999999764 4799999987443
No 316
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.11 E-value=0.00069 Score=53.11 Aligned_cols=31 Identities=29% Similarity=0.352 Sum_probs=29.6
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||.|.+|+++|..|.++|++|+++|+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 5899999999999999999999999999985
No 317
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.10 E-value=0.00097 Score=52.44 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=31.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|..|+.+|..|++.|.+|+++++.+
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 202 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRST 202 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccC
Confidence 4689999999999999999999999999999863
No 318
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=97.08 E-value=0.0009 Score=50.10 Aligned_cols=32 Identities=31% Similarity=0.590 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|.|||+|..|...|..|+++|++|+++|+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~ 34 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDAD 34 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCC
Confidence 36999999999999999999999999999986
No 319
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.07 E-value=0.0012 Score=46.92 Aligned_cols=35 Identities=26% Similarity=0.240 Sum_probs=32.0
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+++|+|||||.+|...+..|.+.|.+|+|+++.
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 34679999999999999999999999999999875
No 320
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.07 E-value=0.0011 Score=52.47 Aligned_cols=34 Identities=24% Similarity=0.576 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++|+|||+|.+|+.+|..|++.|.+|+++++++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~ 216 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALP 216 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCC
Confidence 4689999999999999999999999999999863
No 321
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.07 E-value=0.001 Score=52.05 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=31.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..++|+|+|+|.+|+.+|..|++.|++|+++|+.
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~ 37 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK 37 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4578999999999999999999999999999986
No 322
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.06 E-value=0.001 Score=52.31 Aligned_cols=34 Identities=21% Similarity=0.267 Sum_probs=31.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..++|+|||+|.+|+.+|..|.+.|.+|+++++.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~ 304 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHCLYRR 304 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeec
Confidence 4579999999999999999999999999999975
No 323
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.05 E-value=0.00083 Score=53.42 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=32.2
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+..+||+|||||.+|+.+|...++.|.+.+++-.+
T Consensus 25 ~~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 25 STSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CCCcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 356789999999999999999999999999988764
No 324
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.05 E-value=0.0011 Score=47.69 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=31.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
.+++|||+|-.|...|..|.+.|+.|+++|+.+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~ 34 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEE 34 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHH
Confidence 3689999999999999999999999999999633
No 325
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.03 E-value=0.00078 Score=42.59 Aligned_cols=34 Identities=29% Similarity=0.320 Sum_probs=31.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
++++|+|||||..|..-+..|.+.|.+|+|+.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 4678999999999999999999999999999986
No 326
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.02 E-value=0.0014 Score=44.61 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=31.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+++|+|||||-.|..-+..|.+.|.+|+|+.+.
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc
Confidence 45789999999999999999999999999999653
No 327
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=97.02 E-value=0.00064 Score=51.61 Aligned_cols=35 Identities=29% Similarity=0.496 Sum_probs=31.5
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc--CCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR--GVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~ 73 (125)
.+.+|++|||||+.|++.|..|.-+ +.+|.|+|+.
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke 82 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKE 82 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehh
Confidence 4568999999999999999988876 8999999995
No 328
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=97.00 E-value=0.0013 Score=48.76 Aligned_cols=32 Identities=22% Similarity=0.472 Sum_probs=30.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
++|.|||+|..|...|..|+++|++|+++|++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCC
Confidence 46999999999999999999999999999986
No 329
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.00 E-value=0.0011 Score=55.52 Aligned_cols=34 Identities=26% Similarity=0.535 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++++|||+|++|+.+|..|++.|.+|+|+|+.+
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~ 173 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAP 173 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCC
Confidence 4689999999999999999999999999999863
No 330
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.99 E-value=0.0013 Score=52.64 Aligned_cols=34 Identities=26% Similarity=0.426 Sum_probs=31.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..++|+|||||.+|+.+|..|+..|.+|+++++.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~ 384 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA 384 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC
Confidence 3579999999999999999999999999999975
No 331
>PRK10262 thioredoxin reductase; Provisional
Probab=96.99 E-value=0.0014 Score=49.00 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=32.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..++|+|||+|.+|+.+|..|++.+.+|+++++.+
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~ 179 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence 35789999999999999999999999999999863
No 332
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.99 E-value=0.0014 Score=51.69 Aligned_cols=34 Identities=24% Similarity=0.468 Sum_probs=31.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~ 210 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRD 210 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence 3689999999999999999999999999999863
No 333
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.98 E-value=0.0018 Score=49.11 Aligned_cols=33 Identities=18% Similarity=0.262 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
-++|.|||+|..|...|..++.+|++|+++|..
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~ 39 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVAWDPA 39 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 357999999999999999999999999999986
No 334
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.97 E-value=0.0017 Score=46.06 Aligned_cols=35 Identities=31% Similarity=0.368 Sum_probs=31.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+++|+|||||-.|...+..|.+.|.+|+|+++.
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 45689999999999999999999999999999875
No 335
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.97 E-value=0.002 Score=49.54 Aligned_cols=46 Identities=28% Similarity=0.327 Sum_probs=39.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeee
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRM 85 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~ 85 (125)
...+|.+|||||-.|+.+|.+++..|.+|.|+|.. ...||-+....
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~-f~lGGTCVn~G 63 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELP-FGLGGTCVNVG 63 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecC-CCcCceEEeec
Confidence 44789999999999999999999999999999984 57787764433
No 336
>PRK12831 putative oxidoreductase; Provisional
Probab=96.97 E-value=0.0013 Score=51.97 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=31.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..++|+|||+|.+|+.+|..|.+.|.+|+++++.
T Consensus 280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~ 313 (464)
T PRK12831 280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR 313 (464)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeec
Confidence 4579999999999999999999999999999874
No 337
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.95 E-value=0.0015 Score=48.40 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=30.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|.|||+|..|...|..++++|++|+++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 47999999999999999999999999999985
No 338
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.94 E-value=0.0016 Score=50.75 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=31.3
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~ 182 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 4689999999999999999999999999999863
No 339
>PRK06116 glutathione reductase; Validated
Probab=96.94 E-value=0.0016 Score=50.94 Aligned_cols=34 Identities=24% Similarity=0.446 Sum_probs=31.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++|+|||+|.+|+.+|..|++.|.+|+++++++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~ 200 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD 200 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4689999999999999999999999999999863
No 340
>PRK13748 putative mercuric reductase; Provisional
Probab=96.94 E-value=0.0014 Score=52.66 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=30.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+++++|||+|.+|+.+|..|++.|.+|+++++.
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~ 302 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTILARS 302 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC
Confidence 468999999999999999999999999999974
No 341
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.94 E-value=0.00052 Score=52.70 Aligned_cols=33 Identities=27% Similarity=0.500 Sum_probs=28.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEe
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFD 71 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE 71 (125)
...+||+|||||++|.++|.+.+++|.+.=++-
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a 241 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA 241 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHhhcchhhhhh
Confidence 456899999999999999999999998876654
No 342
>PTZ00058 glutathione reductase; Provisional
Probab=96.93 E-value=0.0015 Score=52.95 Aligned_cols=34 Identities=29% Similarity=0.526 Sum_probs=31.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++|+|||+|..|+.+|..+++.|.+|+++++++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~ 270 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGN 270 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecc
Confidence 5789999999999999999999999999999863
No 343
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.92 E-value=0.0017 Score=50.87 Aligned_cols=34 Identities=29% Similarity=0.505 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++++|||+|.+|+.+|..+++.|.+|+++++.+
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~ 199 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE 199 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 4689999999999999999999999999999863
No 344
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.91 E-value=0.0015 Score=55.21 Aligned_cols=34 Identities=29% Similarity=0.539 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++++|||+|+.|+.+|..|++.|.+|+|+|+.+
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~ 178 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAP 178 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 4679999999999999999999999999999864
No 345
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.91 E-value=0.0015 Score=52.68 Aligned_cols=35 Identities=29% Similarity=0.284 Sum_probs=32.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..++|+|||||.+|+.+|..|++.|.+|+++++.+
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 45789999999999999999999999999999864
No 346
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.90 E-value=0.0019 Score=50.45 Aligned_cols=34 Identities=29% Similarity=0.587 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++++|||+|..|+.+|..|++.|.+|+++++++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~ 191 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTILEAAS 191 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4589999999999999999999999999999863
No 347
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.90 E-value=0.0017 Score=48.33 Aligned_cols=34 Identities=35% Similarity=0.598 Sum_probs=31.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
.+|.|||+|..|...|..++..|++|+++|..+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4799999999999999999999999999998633
No 348
>PRK14727 putative mercuric reductase; Provisional
Probab=96.89 E-value=0.0018 Score=51.32 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+++++|||+|.+|+.+|..|++.|.+|+++++.
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~ 220 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTILARS 220 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC
Confidence 368999999999999999999999999999874
No 349
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.88 E-value=0.0018 Score=51.51 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+.+++|||+|.+|+.+|..|++.|.+|+++++.
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 458999999999999999999999999999974
No 350
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.88 E-value=0.0018 Score=53.37 Aligned_cols=34 Identities=24% Similarity=0.411 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+++|+|||+|.+|+..|..+++.|.+|+++|+.+
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~ 345 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP 345 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence 4689999999999999999999999999999863
No 351
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=96.88 E-value=0.0015 Score=50.94 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=30.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc----CCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR----GVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~----g~~V~viE~~ 73 (125)
...+||+|||||++|+.+|..|..+ .++|+++|.+
T Consensus 34 ~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 34 TAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cccCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 3478999999999999999999864 4699999986
No 352
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.88 E-value=0.0022 Score=48.10 Aligned_cols=33 Identities=27% Similarity=0.460 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.+|+|||+|..|...|..|++.|++|+++.+++
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 579999999999999999999999999999863
No 353
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.87 E-value=0.0018 Score=51.69 Aligned_cols=33 Identities=24% Similarity=0.229 Sum_probs=30.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+++++|||+|..|+.+|..|++.|.+|+++++.
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 358999999999999999999999999999874
No 354
>PLN02507 glutathione reductase
Probab=96.86 E-value=0.0019 Score=51.51 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++++|||+|.+|+.+|..+++.|.+|+|+++.+
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~ 236 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKE 236 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecC
Confidence 4689999999999999999999999999999863
No 355
>PRK14694 putative mercuric reductase; Provisional
Probab=96.86 E-value=0.002 Score=50.86 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+++++|||+|.+|+.+|..|++.|.+|+++++.
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~ 210 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTVLARS 210 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 468999999999999999999999999999974
No 356
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.85 E-value=0.0024 Score=47.38 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=30.4
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
++|.|||+|..|...|..|+++|++|+++|+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 57999999999999999999999999999985
No 357
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.84 E-value=0.002 Score=51.47 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=32.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..++|+|||+|.+|+.+|..|+..+.+|+++++++
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~ 384 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECc
Confidence 45799999999999999999999999999999863
No 358
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.81 E-value=0.002 Score=54.10 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=27.8
Q ss_pred EEEECcCHHHHHHHHHHHHc---CCcEEEEecCCC
Q 033175 44 VGIIGGGMAGLACALSWDKR---GVKSTVFDTGNH 75 (125)
Q Consensus 44 v~VIG~G~~Gl~~A~~l~~~---g~~V~viE~~~~ 75 (125)
|+|||+|++|+.+|..|.+. +++|+||++.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~ 35 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPH 35 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCC
Confidence 68999999999999998775 469999999744
No 359
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.79 E-value=0.0024 Score=48.44 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=30.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCc-EEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVK-STVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~-V~viE~~ 73 (125)
.++|+|||+|..|+.+|..|.+.|.+ |+|+++.
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 46899999999999999999999987 9999874
No 360
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.79 E-value=0.0024 Score=47.41 Aligned_cols=33 Identities=24% Similarity=0.551 Sum_probs=30.6
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
++|.|||+|..|...|..++++|++|+++|+.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 569999999999999999999999999999863
No 361
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.78 E-value=0.0026 Score=46.39 Aligned_cols=35 Identities=23% Similarity=0.395 Sum_probs=31.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..++|+|||+|.+|+.+|..|++.+.+|+++++.+
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~ 174 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 174 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence 35689999999999999999999999999999863
No 362
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.77 E-value=0.0023 Score=47.39 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=28.8
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEec
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDT 72 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~ 72 (125)
+|+|||+|..|...|..|+++|++|+++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 589999999999999999999999999998
No 363
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.77 E-value=0.0024 Score=47.21 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=29.3
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||+|..|...|..|++.|++|+++++.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 5899999999999999999999999999984
No 364
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0029 Score=46.03 Aligned_cols=44 Identities=25% Similarity=0.303 Sum_probs=36.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC---CCCCCccceeee
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG---NHGLGRRMGTRM 85 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~---~~~~GG~~~~~~ 85 (125)
-+|+|||+|+++-.+|.++++..++.++||-. ...+||+..+..
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT 55 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT 55 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence 47999999999999999999999999999962 234577765433
No 365
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=96.72 E-value=0.0026 Score=43.66 Aligned_cols=37 Identities=27% Similarity=0.310 Sum_probs=28.8
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
....++++|+|-|..|-.+|.+|+..|.+|+|.|.+|
T Consensus 20 ~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP 56 (162)
T PF00670_consen 20 MLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDP 56 (162)
T ss_dssp --TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred eeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence 4557889999999999999999999999999999864
No 366
>PLN02546 glutathione reductase
Probab=96.72 E-value=0.0029 Score=51.22 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=31.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
.++|+|||+|..|+.+|..|++.|.+|+++++.+
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~ 285 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK 285 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence 4689999999999999999999999999999863
No 367
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.72 E-value=0.0036 Score=42.88 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=29.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.++.+|+|+|+|.+|..|+.-|...|.+|+++|..
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~ 52 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER 52 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence 34578999999999999999999999999999985
No 368
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.71 E-value=0.0047 Score=40.85 Aligned_cols=35 Identities=31% Similarity=0.335 Sum_probs=31.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCc-EEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVK-STVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~-V~viE~~ 73 (125)
.+.++++|||+|-+|-.++++|...|.+ |+|+.|.
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 4468999999999999999999999986 9999985
No 369
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.70 E-value=0.0029 Score=47.35 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|+|+|+|..|...|.+|++.|.+|+++.+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 47999999999999999999999999999996
No 370
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=96.68 E-value=0.0037 Score=44.24 Aligned_cols=35 Identities=26% Similarity=0.345 Sum_probs=31.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
....+|+|||+|-.|..+|..|++.|. +++++|.+
T Consensus 19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 346789999999999999999999998 69999986
No 371
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.65 E-value=0.0035 Score=46.27 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=29.9
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|.|||+|..|...|..++++|++|+++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCC
Confidence 46999999999999999999999999999975
No 372
>PRK04148 hypothetical protein; Provisional
Probab=96.65 E-value=0.0023 Score=42.60 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=30.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
+.++++||.| .|...|..|++.|++|+.+|-++.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 4689999999 899999999999999999998643
No 373
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=96.65 E-value=0.0036 Score=49.88 Aligned_cols=34 Identities=32% Similarity=0.424 Sum_probs=29.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHH---cCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDK---RGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~---~g~~V~viE~~~ 74 (125)
+++++|||+|.+|+.+|..++. .|.+|+|+|+.+
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~ 223 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNN 223 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCC
Confidence 4689999999999999976654 499999999863
No 374
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=96.63 E-value=0.0035 Score=48.96 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=30.4
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|.|||.|..|+.+|..|+++|++|+++|++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCC
Confidence 57999999999999999999999999999985
No 375
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.62 E-value=0.0033 Score=47.38 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=30.0
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|.|||+|..|...|..|+++|++|+++++.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 36999999999999999999999999999985
No 376
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.61 E-value=0.0044 Score=48.50 Aligned_cols=36 Identities=22% Similarity=0.298 Sum_probs=32.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..+++|+|+|.|+.|+.+|..++..|.+|+++|..+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 457789999999999999999999999999999863
No 377
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.57 E-value=0.0032 Score=47.99 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=26.2
Q ss_pred CcEEEECcCHHHHHHHHHHHHcC-CcEEEEecCCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRG-VKSTVFDTGNH 75 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~~~ 75 (125)
+|+++||.|+++|++|..|.+.+ .+++.||+.+.
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~ 37 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPS 37 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS
T ss_pred eeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 68999999999999999999986 89999998643
No 378
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.56 E-value=0.0045 Score=48.70 Aligned_cols=34 Identities=26% Similarity=0.381 Sum_probs=31.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
..++|+|||+|.+|+.+|..|.+.|. +|+++++.
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~ 306 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRR 306 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 46789999999999999999999998 89999874
No 379
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.55 E-value=0.0041 Score=51.93 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=31.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCc-EEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVK-STVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~-V~viE~~ 73 (125)
..++|+|||||.+|+.+|..+.+.|.+ |++++++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~ 603 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRR 603 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeec
Confidence 457999999999999999999999987 9999975
No 380
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=96.54 E-value=0.0056 Score=40.29 Aligned_cols=33 Identities=39% Similarity=0.520 Sum_probs=29.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
+.+|+|+|+|-.|..+|..|++.|. +++|+|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 4689999999999999999999998 79999985
No 381
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.51 E-value=0.0049 Score=46.04 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=30.0
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
++|.|||+|..|...|..|++.|++|+++++.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 57999999999999999999999999999975
No 382
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=96.51 E-value=0.0098 Score=49.59 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.-++|.|||+|..|...|..++.+|++|+++|..
T Consensus 312 ~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~ 345 (714)
T TIGR02437 312 DVKQAAVLGAGIMGGGIAYQSASKGTPIVMKDIN 345 (714)
T ss_pred ccceEEEECCchHHHHHHHHHHhCCCeEEEEeCC
Confidence 3457999999999999999999999999999985
No 383
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.0044 Score=48.47 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=42.6
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceeeecC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTRMIG 87 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~~~~ 87 (125)
.++.+||||||.|+.=..+|...++.|.+|+=+|++ ..-||.|+++...
T Consensus 5 lP~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn-~yYGg~waSfSms 53 (547)
T KOG4405|consen 5 LPEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSN-EYYGGNWASFSMS 53 (547)
T ss_pred CchhccEEEEcCCCcHHHHHHHhhhcCCceEeccCc-cccCCcccceeec
Confidence 456799999999999999999999999999999997 5688888776654
No 384
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.50 E-value=0.013 Score=40.49 Aligned_cols=61 Identities=25% Similarity=0.296 Sum_probs=41.0
Q ss_pred HHHhHHhhhhhhhhhhhhcccccCCCCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 12 DRRMAAREGQLDKKTFAQEQVTFTAPVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.|+............|... .........+++|.|||.|-.|..+|..|..-|.+|+.+++.
T Consensus 8 ~R~~~~~~~~~~~~~W~~~-~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 68 (178)
T PF02826_consen 8 LRRLPEYHEAQRNGEWASR-ERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRS 68 (178)
T ss_dssp HTTHHHHHHHHHTTBHHHH-TTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HhCHHHHHHHHHcCCCCCC-cCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEeccc
Confidence 4444444444444444111 222233455789999999999999999999999999999986
No 385
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=96.49 E-value=0.005 Score=45.69 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=30.2
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
++|.|||+|..|...|..++..|++|+++|+.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCC
Confidence 56999999999999999999999999999986
No 386
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=96.45 E-value=0.006 Score=47.04 Aligned_cols=34 Identities=32% Similarity=0.462 Sum_probs=31.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...+|+|||+|.+|..++..|...|.+|+++++.
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~ 199 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDIN 199 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 4577999999999999999999999999999985
No 387
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.43 E-value=0.0048 Score=47.91 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=29.6
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||.|..||+.|.-|++.|++|+++|..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid 32 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDID 32 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCC
Confidence 6899999999999999999999999999985
No 388
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.42 E-value=0.0072 Score=45.25 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+|.|||+|..|...|..|+++|++|+++++.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457999999999999999999999999999986
No 389
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=96.39 E-value=0.011 Score=49.26 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=30.8
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
++|.|||+|..|...|..++..|++|+++|..+
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999863
No 390
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.37 E-value=0.0096 Score=42.05 Aligned_cols=35 Identities=26% Similarity=0.228 Sum_probs=32.0
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+++++|+|.|-.|..+|..|.+.|++|+++|..
T Consensus 26 l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 26 LEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45678999999999999999999999999999975
No 391
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0038 Score=48.08 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=31.3
Q ss_pred CCCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 37 PVSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 37 ~~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+..+.+||+|||||-+|+.+|.-|+--=..|+++|=.
T Consensus 350 PLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~ 386 (520)
T COG3634 350 PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA 386 (520)
T ss_pred cccCCceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence 4567899999999999999999998655689998853
No 392
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=96.32 E-value=0.0056 Score=47.65 Aligned_cols=31 Identities=29% Similarity=0.391 Sum_probs=29.6
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||.|..|+.+|..|+++|++|++++++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDID 32 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECC
Confidence 5899999999999999999999999999986
No 393
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.29 E-value=0.0078 Score=47.03 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=32.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
...++|+|+|.|..|..+|..+...|.+|+++|..+
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 457799999999999999999999999999998764
No 394
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=96.29 E-value=0.0087 Score=47.99 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
-++|.|||+|..|...|..++++|++|+++|+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 357999999999999999999999999999986
No 395
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=96.28 E-value=0.007 Score=51.93 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=31.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..++|+|||||.+|+-+|..+.+.|.+|+++.++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr 479 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRR 479 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEec
Confidence 4689999999999999999999999999999875
No 396
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.27 E-value=0.0074 Score=47.06 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=28.4
Q ss_pred CcEEEECcCHHHHHHHHHHHH--------------cCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDK--------------RGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~--------------~g~~V~viE~~ 73 (125)
++++|||||++|+.+|..|++ .+.+|++++++
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~ 219 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAG 219 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCC
Confidence 489999999999999998875 37899999986
No 397
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.26 E-value=0.011 Score=46.14 Aligned_cols=33 Identities=24% Similarity=0.423 Sum_probs=27.4
Q ss_pred CcEEEECcCHHHHHHHHHHHHcC-------------CcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRG-------------VKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g-------------~~V~viE~~~ 74 (125)
..++|||||++|..+|..|++.- .+|+|+|+++
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p 201 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGP 201 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCc
Confidence 46999999999999999887742 3888999873
No 398
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=96.23 E-value=0.0092 Score=45.51 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=31.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
....+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus 22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 446789999999999999999999998 89999986
No 399
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.22 E-value=0.0086 Score=44.68 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=29.6
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||+|..|...|..|++.|++|+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 6999999999999999999999999999985
No 400
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.22 E-value=0.008 Score=46.96 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.++++|+|+|-+|+++|..|++.|.+|++.|+.
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~ 37 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGK 37 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 567999999999999999999999999999975
No 401
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=96.22 E-value=0.0089 Score=47.13 Aligned_cols=38 Identities=21% Similarity=0.221 Sum_probs=34.1
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
....|+|+|||+|.+|..+|..|++.|.+|+++-|.+.
T Consensus 172 ~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 172 DLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred ccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 34578999999999999999999999999999998643
No 402
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=96.21 E-value=0.009 Score=44.89 Aligned_cols=32 Identities=19% Similarity=0.473 Sum_probs=29.2
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
.+|.|||+|..|..+|+.++.+|+ +|+++|..
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~ 34 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV 34 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 479999999999999999999886 89999984
No 403
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.20 E-value=0.011 Score=40.70 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=31.4
Q ss_pred CCCCcEEEECcCH-HHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGM-AGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~-~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+++|+|||+|- +|..+|..|.++|.+|+++.+.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 5578999999996 6999999999999999999985
No 404
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.20 E-value=0.0086 Score=45.02 Aligned_cols=31 Identities=19% Similarity=0.493 Sum_probs=29.4
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||+|..|...|..|+++|++|+++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 5899999999999999999999999999985
No 405
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=96.18 E-value=0.0084 Score=44.26 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=29.3
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||.|..|.+.|..|.++|++|++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~ 32 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRR 32 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence 5899999999999999999999999999985
No 406
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=96.17 E-value=0.0087 Score=48.00 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=30.7
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
++|.|||+|..|...|..++++|++|+++|+.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 579999999999999999999999999999863
No 407
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.16 E-value=0.01 Score=47.70 Aligned_cols=35 Identities=34% Similarity=0.439 Sum_probs=31.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+.+|+|+|+|.+|+.++..+...|.+|+++|.+
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~ 197 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTR 197 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34679999999999999999999999999999986
No 408
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.15 E-value=0.0095 Score=44.87 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=29.7
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||+|..|...|..|+++|++|+++++.
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASKGVPVRLWARR 36 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 6999999999999999999999999999985
No 409
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=96.15 E-value=0.012 Score=43.50 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=31.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcC-CcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRG-VKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~ 73 (125)
....+|+|||+|-.|..+|..|++.| -+++|+|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34678999999999999999999999 599999985
No 410
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.14 E-value=0.012 Score=44.06 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=31.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+++++|||.|.+|..++..|...|.+|+++++.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~ 184 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARK 184 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4689999999999999999999999999999986
No 411
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=96.12 E-value=0.012 Score=43.97 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=32.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+++++|+|.|.+|..+|..|...|.+|+++++.
T Consensus 149 l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~ 183 (287)
T TIGR02853 149 IHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS 183 (287)
T ss_pred CCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC
Confidence 34678999999999999999999999999999986
No 412
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.11 E-value=0.016 Score=36.80 Aligned_cols=30 Identities=33% Similarity=0.402 Sum_probs=27.2
Q ss_pred EEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 44 v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
|+|+|.|..|..++..|.+.+.+|+++|.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d 30 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRD 30 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESS
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECC
Confidence 689999999999999999988899999996
No 413
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=96.11 E-value=0.012 Score=44.82 Aligned_cols=35 Identities=37% Similarity=0.423 Sum_probs=31.9
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
....+|+|||+|-.|..+|..|++.|. +++++|.+
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 446789999999999999999999998 99999985
No 414
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.09 E-value=0.011 Score=47.16 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=31.1
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+++|+|+|.|.+|++++..|...|.+|++.|..
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999999999999999999999999999964
No 415
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=96.09 E-value=0.019 Score=48.11 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=31.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.-++|.|||+|..|...|..++.+|++|+++|..
T Consensus 334 ~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~ 367 (737)
T TIGR02441 334 PVKTLAVLGAGLMGAGIAQVSVDKGLKTVLKDAT 367 (737)
T ss_pred cccEEEEECCCHhHHHHHHHHHhCCCcEEEecCC
Confidence 3457999999999999999999999999999986
No 416
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.09 E-value=0.0096 Score=47.18 Aligned_cols=33 Identities=18% Similarity=0.054 Sum_probs=30.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+++|+|+|.|.+|.++|..|.+.|.+|++.|.+
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~ 40 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQALTLFC 40 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence 578999999999999999999999999999964
No 417
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=96.08 E-value=0.01 Score=47.44 Aligned_cols=32 Identities=31% Similarity=0.497 Sum_probs=30.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|.|||+|..|...|..|+++|++|+++|+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence 36999999999999999999999999999986
No 418
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.08 E-value=0.01 Score=46.83 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.++|.|+|.|.+|+++|..|.+.|++|++.|..
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 46 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKK 46 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEEECCC
Confidence 468999999999999999999999999999975
No 419
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.04 E-value=0.012 Score=46.21 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=32.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..+++|+|+|.|..|..+|..|...|.+|+++|..+
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 356789999999999999999999999999999863
No 420
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.03 E-value=0.01 Score=44.56 Aligned_cols=33 Identities=27% Similarity=0.471 Sum_probs=29.5
Q ss_pred cEEEECcCHHHHHHHHHHHHcC--CcEEEEecCCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRG--VKSTVFDTGNH 75 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~~~ 75 (125)
+|.|||+|..|.++|+.|+.+| ..+.++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 5999999999999999999999 48999998643
No 421
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=96.01 E-value=0.015 Score=39.56 Aligned_cols=32 Identities=38% Similarity=0.534 Sum_probs=28.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|.+||-|..|...|.+|.++|++|+++++.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~ 33 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRS 33 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence 36899999999999999999999999999985
No 422
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.00 E-value=0.022 Score=34.59 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=30.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc-CCcEEEEec
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR-GVKSTVFDT 72 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~-g~~V~viE~ 72 (125)
...++++|+|.|..|..++..|.+. +.++.++++
T Consensus 21 ~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 21 LKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 4457899999999999999999998 678999988
No 423
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.98 E-value=0.017 Score=40.83 Aligned_cols=36 Identities=31% Similarity=0.338 Sum_probs=32.2
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
...+.+|+|||.|-.|..+|..|++.|. +++++|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 3456789999999999999999999997 89999985
No 424
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=95.96 E-value=0.0094 Score=47.22 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=31.5
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..++|+|||+|.+|+-+|..|++.+.+|+++.+.
T Consensus 203 ~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~ 236 (461)
T PLN02172 203 KNEVVVVIGNFASGADISRDIAKVAKEVHIASRA 236 (461)
T ss_pred CCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEee
Confidence 4678999999999999999999999999999875
No 425
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.95 E-value=0.01 Score=46.96 Aligned_cols=35 Identities=34% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
.++|+|+|-|.+|+++|..|.+.|.+|+++|..+.
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCC
Confidence 67899999999999999999999999999996533
No 426
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.93 E-value=0.015 Score=45.54 Aligned_cols=33 Identities=18% Similarity=0.371 Sum_probs=30.8
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.++++|+|.|-+|+++|..|+++|.+|+++|..
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~ 37 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYDAE 37 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 568999999999999999999999999999975
No 427
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.92 E-value=0.014 Score=45.35 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=30.3
Q ss_pred CcEEEECcCHHHHHHHHHHHHcC-CcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRG-VKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~ 73 (125)
.+|+|||+|-.|..+|+.|++++ .+|++.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 57999999999999999999999 899999996
No 428
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.89 E-value=0.019 Score=39.62 Aligned_cols=31 Identities=32% Similarity=0.484 Sum_probs=28.8
Q ss_pred cEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
+|+|||+|-.|..+|..|++.|. +++++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998 59999986
No 429
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.89 E-value=0.016 Score=43.05 Aligned_cols=34 Identities=41% Similarity=0.458 Sum_probs=30.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
..++|+|+|+|-+|.++++.|++.|. +|+|+++.
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~ 160 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD 160 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999997 79999985
No 430
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=95.87 E-value=0.02 Score=37.97 Aligned_cols=31 Identities=39% Similarity=0.487 Sum_probs=28.8
Q ss_pred cEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
+|+|||.|-.|..+|..|++.|. +++++|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998 79999975
No 431
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=95.87 E-value=0.013 Score=45.78 Aligned_cols=46 Identities=22% Similarity=0.289 Sum_probs=36.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc----CCcEEEEecCCCCCCccceeee
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR----GVKSTVFDTGNHGLGRRMGTRM 85 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~----g~~V~viE~~~~~~GG~~~~~~ 85 (125)
-..+.+-+||+|++||++|..|.+. |.++.++|.- +-+||...+..
T Consensus 20 VdqKsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEel-pl~GGSlDG~~ 69 (587)
T COG4716 20 VDQKSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEEL-PLAGGSLDGAG 69 (587)
T ss_pred cccceeEEEccchHhhhheeEEEeccccCCceeEeeecC-cccCCCCCCCC
Confidence 3457899999999999999999885 5799999986 45666654433
No 432
>PLN02494 adenosylhomocysteinase
Probab=95.85 E-value=0.018 Score=45.79 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=32.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
..++.|+|+|.|..|..+|..+...|.+|+++|..+
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 457899999999999999999999999999999864
No 433
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.81 E-value=0.018 Score=45.71 Aligned_cols=35 Identities=26% Similarity=0.326 Sum_probs=31.6
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...++|.|+|.|-+|+++|..|.+.|.+|++.|+.
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~ 47 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDN 47 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence 34568999999999999999999999999999974
No 434
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=95.80 E-value=0.023 Score=40.54 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=31.4
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
....+|+|||+|-.|..+|..|++.|. +++++|.+
T Consensus 26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 446789999999999999999999998 59999986
No 435
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.80 E-value=0.015 Score=43.04 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=29.3
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||.|..|...|..|++.|++|++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~ 31 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIG 31 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCC
Confidence 4889999999999999999999999999986
No 436
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.80 E-value=0.02 Score=41.23 Aligned_cols=35 Identities=29% Similarity=0.342 Sum_probs=31.0
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC---cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV---KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~---~V~viE~~ 73 (125)
.+..+++|+|+|-+|..+|..|.+.|. +++++++.
T Consensus 23 l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~ 60 (226)
T cd05311 23 IEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK 60 (226)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence 345789999999999999999999997 49999986
No 437
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.75 E-value=0.021 Score=41.15 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=31.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.++++|+|||||-.+..-+..|.+.|.+|+|+-+.
T Consensus 23 ~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 23 SNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 44678999999999999999999999999999764
No 438
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.74 E-value=0.023 Score=39.52 Aligned_cols=34 Identities=18% Similarity=0.384 Sum_probs=30.4
Q ss_pred CCCcEEEECc-CHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGG-GMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~-G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+.++++|+|+ |..|..++..|++.|.+|+++.|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 4578999997 999999999999999999999875
No 439
>KOG2755 consensus Oxidoreductase [General function prediction only]
Probab=95.73 E-value=0.0087 Score=44.42 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=26.6
Q ss_pred cEEEECcCHHHHHHHHHHHHc--CCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKR--GVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~--g~~V~viE~~ 73 (125)
+.+|||||++|.+||.+|+.. ..+|+++-+.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitas 33 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITAS 33 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEecc
Confidence 368999999999999999986 4688888875
No 440
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.73 E-value=0.034 Score=46.37 Aligned_cols=33 Identities=30% Similarity=0.500 Sum_probs=30.2
Q ss_pred CCcEEEECcCHHHHHHHHHHH-HcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWD-KRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~-~~g~~V~viE~~ 73 (125)
-++|.|||+|..|...|..++ ..|++|+++|..
T Consensus 309 i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~ 342 (708)
T PRK11154 309 VNKVGVLGGGLMGGGIAYVTATKAGLPVRIKDIN 342 (708)
T ss_pred ccEEEEECCchhhHHHHHHHHHHcCCeEEEEeCC
Confidence 357999999999999999988 889999999985
No 441
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.72 E-value=0.019 Score=47.35 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=30.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
..++|+|||+|.+|+.+|..+.+.|. +|+++++.
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~ 356 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRR 356 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeec
Confidence 46799999999999999999999986 69999875
No 442
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=95.71 E-value=0.024 Score=41.19 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=31.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
....+|+|||+|-.|..+|..|++.|. +++++|.+
T Consensus 22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 345789999999999999999999996 88899985
No 443
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=95.69 E-value=0.025 Score=42.85 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=31.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
-.+.+|+|||||.+|..+|.-+...|.+|+++|.+
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n 200 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLN 200 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecC
Confidence 34568999999999999999999999999999986
No 444
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.67 E-value=0.021 Score=44.53 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=30.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|.|||-|.+|+++|..|.+.|.+|+++|+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~ 35 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKS 35 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCC
Confidence 57999999999999999999999999999975
No 445
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=95.65 E-value=0.025 Score=41.21 Aligned_cols=35 Identities=29% Similarity=0.293 Sum_probs=31.3
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
..+.+|+|||.|-.|..+|..|+..|. +++|+|.+
T Consensus 30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 456799999999999999999999996 89999875
No 446
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=95.65 E-value=0.025 Score=40.59 Aligned_cols=35 Identities=29% Similarity=0.355 Sum_probs=31.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
..+.+|+|||+|-.|..+|..|++.|. +++|+|.+
T Consensus 19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 446789999999999999999999997 88889875
No 447
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=95.64 E-value=0.027 Score=42.64 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=30.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~~~ 75 (125)
..+|+|||+|..|..+|+.++..|+ ++.|+|..+.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 3689999999999999999999996 9999998643
No 448
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.64 E-value=0.024 Score=42.49 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=29.0
Q ss_pred cEEEECcCHHHHHHHHHHHHcC--CcEEEEecCC
Q 033175 43 RVGIIGGGMAGLACALSWDKRG--VKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~~ 74 (125)
+|+|||+|.+|.++|+.|+..| .+++++|+..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~ 35 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE 35 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 6999999999999999999999 4799999853
No 449
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.63 E-value=0.024 Score=45.11 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=32.8
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...+++|+|||.|..|..+|..|...|.+|+++|+.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~d 286 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEID 286 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 455789999999999999999999999999999875
No 450
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=95.63 E-value=0.019 Score=45.23 Aligned_cols=34 Identities=24% Similarity=0.171 Sum_probs=30.8
Q ss_pred CCCcEEEECcCHHHHH-HHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLA-CALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~-~A~~l~~~g~~V~viE~~ 73 (125)
..++|.|||.|-+|++ +|..|.++|++|++.|..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~ 40 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLK 40 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCC
Confidence 3468999999999999 699999999999999975
No 451
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=95.62 E-value=0.02 Score=44.50 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=27.0
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||.|..|+.+|..++. |++|+++|.+
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d 31 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDIL 31 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECC
Confidence 58999999999999987775 9999999985
No 452
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.62 E-value=0.031 Score=37.13 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=30.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcC-CcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRG-VKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~ 73 (125)
...+++|||+|..|...+..|.+.| .+|++++++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~ 52 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVIVNRT 52 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 3578999999999999999999986 789999875
No 453
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.60 E-value=0.025 Score=40.28 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=29.0
Q ss_pred cEEEEC-cCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 43 RVGIIG-GGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 43 ~v~VIG-~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
+|.||| +|..|..+|..|++.|++|+++.+++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 589997 79999999999999999999998863
No 454
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=95.59 E-value=0.018 Score=41.93 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
.-+.|.|||+|..|...|.-.+..|+.|++++++..
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 346799999999999999999999999999999643
No 455
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=95.59 E-value=0.029 Score=41.00 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=32.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
+..+++|+|+|..+..+|.-+...|++|+|+|.++.
T Consensus 99 p~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 99 PAPHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 457899999999999999999999999999997644
No 456
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.57 E-value=0.021 Score=45.21 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=29.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
..++|+|||+|.+|+.+|..+.+.|. +|++++..
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 45789999999999999998888885 78877654
No 457
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=95.57 E-value=0.019 Score=43.34 Aligned_cols=32 Identities=25% Similarity=0.431 Sum_probs=29.9
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
++|.|||+|..|...|+.++..|++|+++|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 57999999999999999999988999999986
No 458
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=95.57 E-value=0.026 Score=45.39 Aligned_cols=34 Identities=35% Similarity=0.482 Sum_probs=31.3
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
++.+|+|+|+|.+|+.++..+...|.+|+++|.+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~ 196 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTR 196 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3578999999999999999999999999999986
No 459
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=95.56 E-value=0.021 Score=47.53 Aligned_cols=34 Identities=32% Similarity=0.472 Sum_probs=30.2
Q ss_pred CCcEEEECcCHHHHHHHHHHH-HcCCcEEEEecCC
Q 033175 41 DPRVGIIGGGMAGLACALSWD-KRGVKSTVFDTGN 74 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~-~~g~~V~viE~~~ 74 (125)
-++|.|||+|..|...|..++ +.|++|+++|..+
T Consensus 304 i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 304 IKKVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred ccEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 357999999999999999888 5899999999863
No 460
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=95.50 E-value=0.028 Score=44.77 Aligned_cols=34 Identities=26% Similarity=0.455 Sum_probs=29.2
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcC-CcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRG-VKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~ 73 (125)
..++|+|||+|..|+.+|..+.+.| .+|+++|..
T Consensus 282 ~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~ 316 (485)
T TIGR01317 282 KGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIM 316 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEec
Confidence 4679999999999999988877777 479999875
No 461
>PRK06223 malate dehydrogenase; Reviewed
Probab=95.50 E-value=0.03 Score=41.79 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=29.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
.+|.|||+|..|..+|+.++..|+ +|.++|..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~ 35 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIV 35 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECC
Confidence 479999999999999999999876 99999985
No 462
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.48 E-value=0.031 Score=41.11 Aligned_cols=34 Identities=32% Similarity=0.326 Sum_probs=30.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..++++|+|+|-+|..++..|++.|.+|+++++.
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3568999999999999999999999999999875
No 463
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=95.48 E-value=0.019 Score=38.22 Aligned_cols=32 Identities=28% Similarity=0.239 Sum_probs=27.7
Q ss_pred EEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 44 VGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 44 v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
++|+|+|..+..++.-++..|++|+++|.++.
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998744
No 464
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=95.47 E-value=0.015 Score=43.75 Aligned_cols=33 Identities=36% Similarity=0.537 Sum_probs=27.0
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcC-------CcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRG-------VKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g-------~~V~viE~~ 73 (125)
..+|+|||+|..|++.|..+.+.. .+|++++-.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr 42 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR 42 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence 468999999999999998777743 588888753
No 465
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=95.43 E-value=0.016 Score=44.24 Aligned_cols=37 Identities=19% Similarity=0.462 Sum_probs=30.7
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHc-CC-cEEEEecCCC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKR-GV-KSTVFDTGNH 75 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~-g~-~V~viE~~~~ 75 (125)
...++|+|||||.+|+.+|..+.++ |. +|-|+|..++
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 4567999999999999999999875 43 8999998644
No 466
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.42 E-value=0.04 Score=36.75 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=28.3
Q ss_pred cEEEECc-CHHHHHHHHHHHHcCC--cEEEEecC
Q 033175 43 RVGIIGG-GMAGLACALSWDKRGV--KSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~-G~~Gl~~A~~l~~~g~--~V~viE~~ 73 (125)
+|.|||+ |..|..+|+.|...++ ++.++|..
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~ 35 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN 35 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC
Confidence 6999999 9999999999999875 79999985
No 467
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.42 E-value=0.025 Score=45.01 Aligned_cols=33 Identities=36% Similarity=0.447 Sum_probs=30.7
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.++|.|+|.|-+|+++|..|.++|++|++.|..
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~ 39 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRVADTR 39 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCC
Confidence 467999999999999999999999999999974
No 468
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.42 E-value=0.021 Score=45.21 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=29.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+++|+|+|.|.+|.++|..|. +|.+|+++|..
T Consensus 6 ~~~v~v~G~G~sG~a~~~~L~-~g~~v~v~D~~ 37 (454)
T PRK01368 6 KQKIGVFGLGKTGISVYEELQ-NKYDVIVYDDL 37 (454)
T ss_pred CCEEEEEeecHHHHHHHHHHh-CCCEEEEECCC
Confidence 578999999999999999998 59999999954
No 469
>PRK08328 hypothetical protein; Provisional
Probab=95.41 E-value=0.035 Score=40.06 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=30.8
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
..+.+|+|||+|-.|..+|..|++.|. +++++|.+
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 345789999999999999999999997 78899875
No 470
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=95.39 E-value=0.009 Score=39.40 Aligned_cols=81 Identities=20% Similarity=0.310 Sum_probs=43.1
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCCCCCccceee-----ecCCCcccccccccccccCchHHHHHHH
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNHGLGRRMGTR-----MIGPQPLIFDHAAQFFTVNDSRFRELVD 112 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~~~GG~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 112 (125)
.....+|.|||+|-.|-.++..|.+.|+.|.-+...+.....+...+ ........-+...-+++..+..+..+.+
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI~~va~ 86 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAIAEVAE 86 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHHHHHHH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHHHHHHH
Confidence 45567999999999999999999999999988765322110011000 0111111111222334455677777777
Q ss_pred HHHHCC
Q 033175 113 GWLERG 118 (125)
Q Consensus 113 ~~~~~g 118 (125)
.+...+
T Consensus 87 ~La~~~ 92 (127)
T PF10727_consen 87 QLAQYG 92 (127)
T ss_dssp HHHCC-
T ss_pred HHHHhc
Confidence 777654
No 471
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=95.38 E-value=0.034 Score=42.62 Aligned_cols=34 Identities=21% Similarity=0.158 Sum_probs=31.1
Q ss_pred CCCcEEEECc-CHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGG-GMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~-G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+++|+|.|+ |..|..++.+|.++|++|+.+++.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 4578999998 999999999999999999999874
No 472
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.38 E-value=0.023 Score=44.72 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=33.6
Q ss_pred CCCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 38 VSSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 38 ~~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
..++++|+|+|+|++|.++...|-..-++|+|+.++++
T Consensus 52 ~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRny 89 (491)
T KOG2495|consen 52 GGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRNY 89 (491)
T ss_pred CCCCceEEEEcCchHHHHHHHhccccccceEEeccccc
Confidence 34567999999999999999999888999999998755
No 473
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=95.37 E-value=0.089 Score=40.02 Aligned_cols=35 Identities=31% Similarity=0.377 Sum_probs=32.0
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+++|.|||.|..|..+|..|+..|++|+.+++.
T Consensus 144 l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~ 178 (330)
T PRK12480 144 VKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAY 178 (330)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence 45678999999999999999999999999999975
No 474
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=95.31 E-value=0.038 Score=40.83 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcC-CcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRG-VKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~ 73 (125)
...++++|+|+|-+|..++..|...| .+|+|+.|.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~ 156 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT 156 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 34578999999999999999999999 799999985
No 475
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.31 E-value=0.029 Score=42.25 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=28.9
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|+|+|..|.-.|++|++.|.+|+++-|.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~ 32 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRS 32 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecH
Confidence 6999999999999999999999888888875
No 476
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=95.30 E-value=0.035 Score=40.58 Aligned_cols=35 Identities=23% Similarity=0.317 Sum_probs=30.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcC-----------CcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRG-----------VKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g-----------~~V~viE~~ 73 (125)
..+.+|+|||+|-.|..++..|++.| .+++|+|.+
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 34678999999999999999999974 389999985
No 477
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=95.30 E-value=0.03 Score=44.67 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=28.2
Q ss_pred cEEEECcCHHHHHHHHHHHHcC--CcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRG--VKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g--~~V~viE~~ 73 (125)
+|.|||.|..|+.+|..|+++| ++|+.+|.+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~ 35 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDIS 35 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECC
Confidence 5999999999999999999984 789999975
No 478
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.30 E-value=0.048 Score=42.08 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=30.9
Q ss_pred CCCcEEEEC-cCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIG-GGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG-~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...+|.||| .|..|.+.|..|.++|++|+++++.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 346899999 8999999999999999999999975
No 479
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.27 E-value=0.033 Score=43.51 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=29.5
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|+|+|+|..|..+|..|.+.|++|+++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~ 32 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTD 32 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 6899999999999999999999999999985
No 480
>PRK05717 oxidoreductase; Validated
Probab=95.27 E-value=0.054 Score=38.84 Aligned_cols=35 Identities=17% Similarity=0.086 Sum_probs=29.9
Q ss_pred CCCCcEEEECc-CHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGG-GMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~-G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
...+.++|+|+ |-.|..+|.+|.++|.+|+++++.
T Consensus 8 ~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~ 43 (255)
T PRK05717 8 HNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLD 43 (255)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCC
Confidence 44577999996 778999999999999999999764
No 481
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.25 E-value=0.032 Score=41.57 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=29.6
Q ss_pred cEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 43 RVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 43 ~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+|.|||.|..|...|..|.++|++|++++++
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~ 33 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVN 33 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 6999999999999999999999999999985
No 482
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=95.25 E-value=0.041 Score=38.80 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=31.1
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
..+.+|+|||+|-.|..+|..|+..|. +++++|.+
T Consensus 19 L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 19 LRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 346789999999999999999999997 69999875
No 483
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.22 E-value=0.04 Score=43.02 Aligned_cols=35 Identities=29% Similarity=0.395 Sum_probs=31.9
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~ 74 (125)
...+++|+|+|..|..++..|.+.|.+|+++|+.+
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~ 264 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDP 264 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 35789999999999999999999999999999863
No 484
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=95.21 E-value=0.059 Score=38.58 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=30.1
Q ss_pred CCCcEEEECc-CHHHHHHHHHHHHcCCcEEEEecC
Q 033175 40 SDPRVGIIGG-GMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~-G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+++++|+|+ |-.|..+|.+|.++|++|+++.+.
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~ 43 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRD 43 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCC
Confidence 4678999996 778999999999999999999875
No 485
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=95.20 E-value=0.045 Score=38.58 Aligned_cols=34 Identities=29% Similarity=0.378 Sum_probs=30.6
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
.+.+|+|||+|-.|..+|..|+..|. +++++|.+
T Consensus 18 ~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 18 RSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred hhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 45789999999999999999999997 69999975
No 486
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.19 E-value=0.049 Score=41.12 Aligned_cols=33 Identities=21% Similarity=0.462 Sum_probs=30.1
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCC--cEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGV--KSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~--~V~viE~~ 73 (125)
+.+|.|||+|-.|.++|+.|...+. .+.|+|..
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~ 40 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN 40 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4689999999999999999999987 79999975
No 487
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.19 E-value=0.046 Score=40.82 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=29.1
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCC--cEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGV--KSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~--~V~viE~~ 73 (125)
.+|.|||.|..|.+.|..|.+.|. +|+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~ 40 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRS 40 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 579999999999999999999985 89999985
No 488
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.17 E-value=0.047 Score=40.65 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.0
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCCc-EEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGVK-STVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~~-V~viE~~ 73 (125)
..+.++|+|+|=+|.++|+.|++.|.+ |+|+.|.
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 456899999998899999999999986 9999885
No 489
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=95.17 E-value=0.04 Score=43.14 Aligned_cols=35 Identities=20% Similarity=0.213 Sum_probs=31.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcC-CcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRG-VKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~ 73 (125)
....+|+|||+|..|..++..|...| .+|+++++.
T Consensus 178 l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 178 LKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred ccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 34578999999999999999999999 789999985
No 490
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.16 E-value=0.051 Score=43.96 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=31.9
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecCCC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTGNH 75 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~~~ 75 (125)
+.+++|+|.|..|..+|..|.++|++|+++|+++.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCHH
Confidence 46799999999999999999999999999999633
No 491
>PRK08017 oxidoreductase; Provisional
Probab=95.15 E-value=0.043 Score=39.13 Aligned_cols=32 Identities=28% Similarity=0.277 Sum_probs=29.1
Q ss_pred CcEEEECc-CHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGG-GMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~-G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
+.++|+|+ |..|..+|..|+++|.+|+++.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~ 35 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRK 35 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 46999998 999999999999999999999875
No 492
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.14 E-value=0.048 Score=41.16 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=29.4
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCC--cEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGV--KSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~--~V~viE~~ 73 (125)
..+|.|||+|..|.++|+.|...+. .+.|+|..
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~ 37 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV 37 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4689999999999999999999886 68999975
No 493
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=95.13 E-value=0.039 Score=43.73 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=30.4
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
..++++|||+|.+|+.+|..+.+.|. +|+|+++.
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~ 315 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRR 315 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEec
Confidence 35789999999999999999999995 79999975
No 494
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=95.13 E-value=0.014 Score=45.88 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=27.8
Q ss_pred CcEEEECcCHHHHHHHHHHHHc--------------CCcEEEEecCC
Q 033175 42 PRVGIIGGGMAGLACALSWDKR--------------GVKSTVFDTGN 74 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~--------------g~~V~viE~~~ 74 (125)
..++|||||++|+..|..|+.- -.+|+++|+.+
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d 265 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAAD 265 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccch
Confidence 3689999999999999998772 25899999964
No 495
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=95.10 E-value=0.049 Score=39.45 Aligned_cols=34 Identities=29% Similarity=0.403 Sum_probs=30.8
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
.+.+|+|||.|-.|..+|..|++.|. +++|+|.+
T Consensus 10 ~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 10 RNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred hCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35789999999999999999999997 89999975
No 496
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.10 E-value=0.033 Score=43.83 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.5
Q ss_pred CCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 41 DPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 41 ~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.++|.|+|.|-+|+++|..|.+.|++|++.|..
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~ 41 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIAWDDN 41 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence 468999999999999999999999999999964
No 497
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.08 E-value=0.039 Score=40.84 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=29.7
Q ss_pred CcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 42 PRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 42 ~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
.+|.|||.|..|...|..|++.|++|++++++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 36999999999999999999999999999985
No 498
>PTZ00117 malate dehydrogenase; Provisional
Probab=95.05 E-value=0.055 Score=40.89 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=30.7
Q ss_pred CCCcEEEECcCHHHHHHHHHHHHcC-CcEEEEecCC
Q 033175 40 SDPRVGIIGGGMAGLACALSWDKRG-VKSTVFDTGN 74 (125)
Q Consensus 40 ~~~~v~VIG~G~~Gl~~A~~l~~~g-~~V~viE~~~ 74 (125)
...+|.|||+|..|.++|+.++..| .++.|+|...
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 3568999999999999999999998 5899999853
No 499
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.00 E-value=0.052 Score=38.80 Aligned_cols=35 Identities=29% Similarity=0.317 Sum_probs=32.0
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCCcEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGVKSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~~V~viE~~ 73 (125)
..+++|+|||||-.+..=|..|.+.|.+|+|+-..
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 34678999999999999999999999999999875
No 500
>PRK08223 hypothetical protein; Validated
Probab=94.97 E-value=0.055 Score=40.50 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=31.2
Q ss_pred CCCCcEEEECcCHHHHHHHHHHHHcCC-cEEEEecC
Q 033175 39 SSDPRVGIIGGGMAGLACALSWDKRGV-KSTVFDTG 73 (125)
Q Consensus 39 ~~~~~v~VIG~G~~Gl~~A~~l~~~g~-~V~viE~~ 73 (125)
..+.+|+|||+|-.|..+|.+|++.|. +++++|.+
T Consensus 25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 446789999999999999999999997 88889875
Done!