BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033176
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFW 57
M C C V A+ K+ GV+ VEV LE + G D +++AV G +AE
Sbjct: 9 MTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEVL 65
>pdb|1MWY|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Apo-Form
pdb|1MWZ|A Chain A, Solution Structure Of The N-Terminal Domain Of Znta In
The Zn(Ii)-Form
Length = 73
Score = 33.9 bits (76), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVD-RNKVLKAVRRAG 51
M C C R V+NA+ +L GV+ V+V EK+ D R +V A+++AG
Sbjct: 12 MDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAG 63
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 1 MCCTGCERVVKNAIYKLRGVDSVEVELELEK--VTAVGYVDRNKVLKAVRRAGKRA 54
M CT C ++ AI K+ GV S +V LE+ V+ G + AV RAG A
Sbjct: 11 MDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHA 66
>pdb|4A47|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A47|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAE 55
M CT C V A+ +V+V+L +KVT + ++ A+ AG E
Sbjct: 9 MDCTSCAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 63
>pdb|2QGY|A Chain A, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
pdb|2QGY|B Chain B, Crystal Structure Of An Enolase From The Environmental
Genome Shotgun Sequencing Of The Sargasso Sea
Length = 391
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 58 PYPNPPLYFTSANNYFKDTTNEFKESYNYYRHGYNVGDKHGTLPV 102
P PN P+Y T ++ KDT + ++ +Y G K+G + +
Sbjct: 132 PKPNVPIYATCWSDLKKDTNDYLRQIEKFY------GKKYGGIKI 170
>pdb|1Q8L|A Chain A, Second Metal Binding Domain Of The Menkes Atpase
Length = 84
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAV 35
M C C ++ I KL+GV ++V L+ ++ T V
Sbjct: 18 MTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIV 52
>pdb|1A9B|A Chain A, Decamer-Like Conformation Of A Nano-Peptide Bound To
Hla- B3501 Due To Nonstandard Positioning Of The
C-Terminus
pdb|1A9B|D Chain D, Decamer-Like Conformation Of A Nano-Peptide Bound To
Hla- B3501 Due To Nonstandard Positioning Of The
C-Terminus
pdb|1A9E|A Chain A, Decamer-Like Conformation Of A Nano-Peptide Bound To
Hla- B3501 Due To Nonstandard Positioning Of The
C-Terminus
Length = 277
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 31 KVTAVGYVDRNKVLK-----AVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYN 85
+ AVGYVD + ++ A R RA W P Y+ FK T ++ES
Sbjct: 21 RFIAVGYVDDTQFVRFDSDAASPRTEPRAP-WIEQEGPEYWDRNTQIFKTNTQTYRESLR 79
Query: 86 YYRHGYN 92
R YN
Sbjct: 80 NLRGYYN 86
>pdb|3VFM|A Chain A, Crystal Structure Of Hla B3508 Lpep155a, Hla Mutant
Ala155
Length = 276
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 31 KVTAVGYVDRNKVLK-----AVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYN 85
+ AVGYVD + ++ A R RA W P Y+ FK T ++ES
Sbjct: 21 RFIAVGYVDDTQFVRFDSDAASPRTEPRAP-WIEQEGPEYWDRNTQIFKTNTQTYRESLR 79
Query: 86 YYRHGYN 92
R YN
Sbjct: 80 NLRGYYN 86
>pdb|1CG9|A Chain A, Complex Recognition Of The Supertypic Bw6-Determinant On
Hla-B And-C Molecules By The Monoclonal Antibody
Sfr8-B6
Length = 277
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 31 KVTAVGYVDRNKVLK-----AVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYN 85
+ AVGYVD + ++ A R RA W P Y+ FK T ++ES
Sbjct: 21 RFIAVGYVDDTQFVRFDSDAASPRTEPRAP-WIEQEGPEYWDRNTQIFKTNTQTYRESLR 79
Query: 86 YYRHGYN 92
R YN
Sbjct: 80 NLRGYYN 86
>pdb|3VFO|A Chain A, Crystal Structure Of Hla B3508 Lpep157a, Hla Mutant
Ala157
Length = 276
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 31 KVTAVGYVDRNKVLK-----AVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYN 85
+ AVGYVD + ++ A R RA W P Y+ FK T ++ES
Sbjct: 21 RFIAVGYVDDTQFVRFDSDAASPRTEPRAP-WIEQEGPEYWDRNTQIFKTNTQTYRESLR 79
Query: 86 YYRHGYN 92
R YN
Sbjct: 80 NLRGYYN 86
>pdb|3VFN|A Chain A, Crystal Structure Of Hla B3508lpep151a, Hla Mutant
Ala151
Length = 276
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 31 KVTAVGYVDRNKVLK-----AVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYN 85
+ AVGYVD + ++ A R RA W P Y+ FK T ++ES
Sbjct: 21 RFIAVGYVDDTQFVRFDSDAASPRTEPRAP-WIEQEGPEYWDRNTQIFKTNTQTYRESLR 79
Query: 86 YYRHGYN 92
R YN
Sbjct: 80 NLRGYYN 86
>pdb|1XH3|A Chain A, Conformational Restraints And Flexibility Of 14-Meric
Peptides In Complex With Hla-B3501
pdb|1ZHK|A Chain A, Crystal Structure Of Hla-B3501 Presenting 13-Mer Ebv
Antigen Lpeplpqgqltay
pdb|1ZSD|A Chain A, Crystal Structure Of Hla-B3501 Presenting An 11-Mer Ebv
Antigen Eplpqgqltay
pdb|2AXG|A Chain A, The Immunogenicity Of A Viral Cytotoxic T Cell Epitope
Is Controlled By Its Mhc-Bound Conformation
pdb|2H6P|A Chain A, Crystal Structure Of Hla-B3501 Presenting The Human
Cytochrome P450 Derived Peptide, Kpivvlhgy
pdb|2CIK|A Chain A, Insights Into Crossreactivity In Human Allorecognition:
The Structure Of Hla-B35011 Presenting An Epitope
Derived From Cytochrome P450.
pdb|2FYY|A Chain A, The Role Of T Cell Receptor Alpha Genes In Directing
Human Mhc Restriction
pdb|2NX5|A Chain A, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|F Chain F, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|K Chain K, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|2NX5|Q Chain Q, Crystal Structure Of Els4 Tcr Bound To Hla-B3501
Presenting Peptide Eplpqgqltay At 1.7a
pdb|3MV7|A Chain A, Crystal Structure Of The Tk3 Tcr In Complex With
Hla-B3501HPVG
pdb|3MV8|A Chain A, Crystal Structure Of The Tk3-Gln55his Tcr In Complex
With Hla- B3501HPVG
pdb|3MV9|A Chain A, Crystal Structure Of The Tk3-Gln55ala Tcr In Complex
With Hla- B3501HPVG
pdb|3LKN|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1918 Strain
pdb|3LKO|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1934 Strain
pdb|3LKP|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1972 Strain
pdb|3LKQ|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1977 Strain
pdb|3LKR|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 2009 H1n1 Swine Origin Strain
pdb|3LKS|A Chain A, Crystal Structure Of Hla B3501 In Complex With Influenza
Np418 Epitope From 1980 Strain
Length = 276
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 31 KVTAVGYVDRNKVLK-----AVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYN 85
+ AVGYVD + ++ A R RA W P Y+ FK T ++ES
Sbjct: 21 RFIAVGYVDDTQFVRFDSDAASPRTEPRAP-WIEQEGPEYWDRNTQIFKTNTQTYRESLR 79
Query: 86 YYRHGYN 92
R YN
Sbjct: 80 NLRGYYN 86
>pdb|1ZHL|A Chain A, Crystal Structure Of Hla-B3508 Presenting 13-Mer Ebv
Antigen Lpeplpqgqltay
pdb|2AK4|A Chain A, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|F Chain F, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|K Chain K, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AK4|Q Chain Q, Crystal Structure Of Sb27 Tcr In Complex With Hla-B3508-
13mer Peptide
pdb|2AXF|A Chain A, The Immunogenicity Of A Viral Cytotoxic T Cell Epitope
Is Controlled By Its Mhc-Bound Conformation
pdb|2FZ3|A Chain A, The Role Of T Cell Receptor Alpha Genes In Directing
Human Mhc Restriction
pdb|2NW3|A Chain A, Crystal Structure Of Hla-B3508 Presenting Ebv Peptide
Eplpqgqltay At 1.7a
pdb|3BW9|A Chain A, Crystal Structure Of Hla B3508 In Complex With A Hcmv
12- Mer Peptide From The Pp65 Protein
pdb|3BWA|A Chain A, Crystal Structure Of Hla B3508 In Complex With A Hcmv 8-
Mer Peptide From The Pp65 Protein
pdb|3VFS|A Chain A, Crystal Structure Of Hla B3508lpep-P5ala , Peptide
Mutant P5-Ala
pdb|3VFT|A Chain A, Crystal Structure Of Hla B3508lpep-P6ala, Peptide Mutant
P6-Ala
pdb|3VFU|A Chain A, Crystal Structure Of Hla B3508 Lpep-P7ala, Peptide
Mutant P7-Ala
pdb|3VFV|A Chain A, Crystal Structure Of Hla B3508 Lpep-P9ala, Peptide
Mutant P9-Ala
pdb|3VFW|A Chain A, Crystal Structure Of Hla B3508 Lpep-P10ala, Peptide
Mutant P10-Ala
pdb|3VFR|A Chain A, Crystal Structure Of Hla B3508lpep-P4ala, Peptide Mutant
P4-Ala
Length = 276
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 31 KVTAVGYVDRNKVLK-----AVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYN 85
+ AVGYVD + ++ A R RA W P Y+ FK T ++ES
Sbjct: 21 RFIAVGYVDDTQFVRFDSDAASPRTEPRAP-WIEQEGPEYWDRNTQIFKTNTQTYRESLR 79
Query: 86 YYRHGYN 92
R YN
Sbjct: 80 NLRGYYN 86
>pdb|3VFP|A Chain A, Crystal Structure Of Hla B3508 Lpep158g, Hla Mutant
Gly158
Length = 276
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 31 KVTAVGYVDRNKVLK-----AVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYN 85
+ AVGYVD + ++ A R RA W P Y+ FK T ++ES
Sbjct: 21 RFIAVGYVDDTQFVRFDSDAASPRTEPRAP-WIEQEGPEYWDRNTQIFKTNTQTYRESLR 79
Query: 86 YYRHGYN 92
R YN
Sbjct: 80 NLRGYYN 86
>pdb|1S6O|A Chain A, Solution Structure And Backbone Dynamics Of The Apo-Form
Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
pdb|1S6U|A Chain A, Solution Structure And Backbone Dynamics Of The Cu(I)
Form Of The Second Metal-Binding Domain Of The Menkes
Protein Atp7a
Length = 76
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAV 35
M C C ++ I KL+GV ++V L+ ++ T V
Sbjct: 12 MTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIV 46
>pdb|2CRL|A Chain A, The Apo Form Of Hma Domain Of Copper Chaperone For
Superoxide Dismutase
Length = 98
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRA 54
M C C V+ ++ + GV VEV LE + V + +V + G++A
Sbjct: 27 MTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQA 80
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 1 MCCTGCERVVKNAIYKLRGVDSVEVELELE 30
M C C + ++ A+ L GV+ V V L E
Sbjct: 11 MTCAMCVKSIETAVGSLEGVEEVRVNLATE 40
>pdb|1MIY|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-adding Enzyme In Complex With Ctp
pdb|1MIY|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-adding Enzyme In Complex With Ctp
Length = 404
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 92 NVGDKHGTLPVTHRGDDKVSNMFNDD 117
+VG KHGT+ V H+G F D
Sbjct: 61 DVGSKHGTVVVVHKGKAYEVTTFKTD 86
>pdb|1MIV|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme
pdb|1MIV|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme
pdb|1MIW|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Atp
pdb|1MIW|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Cca-Adding Enzyme In Complex With Atp
Length = 404
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 92 NVGDKHGTLPVTHRGDDKVSNMFNDD 117
+VG KHGT+ V H+G F D
Sbjct: 61 DVGSKHGTVVVVHKGKAYEVTTFKTD 86
>pdb|3KWW|A Chain A, Crystal Structure Of The 'restriction Triad' Mutant Of
Hla B Beta-2-Microglobulin And Ebv Peptide
pdb|3KXF|A Chain A, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|C Chain C, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|K Chain K, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
pdb|3KXF|I Chain I, Crystal Structure Of Sb27 Tcr In Complex With The
'restriction Triad' Mutant Hla-B3508-13mer
Length = 276
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 31 KVTAVGYVDRNKVLK-----AVRRAGKRAEFWPYPNPPLYFTSANNYFKDTTNEFKESYN 85
+ AVGYVD + ++ A R RA W P Y+ FK T ++ES
Sbjct: 21 RFIAVGYVDDTQFVRFDSDAASPRTEPRAP-WIEQEGPEYWDRNTAIFKANTQTYRESLR 79
Query: 86 YYRHGYN 92
R YN
Sbjct: 80 NLRGYYN 86
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFW 57
M C GC V + KL GV +++L +KV + +L +++ GK +
Sbjct: 10 MTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYL 65
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 1 MCCTGCERVVKNAIYKLRGVDSVEVELELEKVTAVGYVDRNKVLKAVRRAGKRAEFW 57
M C GC V + KL GV +++L +KV + +L +++ GK +
Sbjct: 9 MTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYL 64
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,065,337
Number of Sequences: 62578
Number of extensions: 164850
Number of successful extensions: 436
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 422
Number of HSP's gapped (non-prelim): 26
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)