Query 033177
Match_columns 125
No_of_seqs 106 out of 747
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:43:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033177.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033177hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_J 50S ribosomal protein L 100.0 1.2E-44 4E-49 272.7 10.9 115 1-115 1-116 (141)
2 3u5e_V L17A, YL32, 60S ribosom 100.0 2.4E-42 8.2E-47 259.1 10.2 110 6-115 3-112 (137)
3 1vq8_K 50S ribosomal protein L 100.0 1.9E-41 6.4E-46 252.8 11.6 106 10-115 2-107 (132)
4 3r8s_K 50S ribosomal protein L 100.0 2.1E-38 7.3E-43 233.7 12.2 92 19-114 1-96 (122)
5 3v2d_O 50S ribosomal protein L 100.0 1.6E-38 5.6E-43 234.3 11.5 93 19-115 1-96 (122)
6 3bbo_M Ribosomal protein L14; 100.0 2.7E-38 9.2E-43 232.9 9.9 92 19-114 1-95 (121)
7 1whi_A Ribosomal protein L14; 100.0 3.8E-38 1.3E-42 232.2 10.5 94 19-116 1-97 (122)
8 2ftc_K 39S ribosomal protein L 72.2 5 0.00017 28.0 4.2 34 53-86 2-35 (98)
9 3r8s_P 50S ribosomal protein L 61.6 9.7 0.00033 27.2 4.0 36 51-86 15-51 (114)
10 3v2d_T 50S ribosomal protein L 60.4 13 0.00043 27.8 4.6 36 51-86 18-54 (146)
11 2qqr_A JMJC domain-containing 47.7 26 0.00089 25.0 4.4 41 53-103 4-44 (118)
12 2zjr_M 50S ribosomal protein L 41.8 15 0.0005 27.9 2.4 36 51-86 23-59 (166)
13 3bbo_R Ribosomal protein L19; 34.3 6.5 0.00022 31.4 -0.7 36 51-86 139-174 (233)
14 2xdp_A Lysine-specific demethy 31.7 48 0.0016 23.8 3.7 42 53-104 5-46 (123)
15 2gix_A Inward rectifier potass 30.9 39 0.0013 25.8 3.3 37 77-115 13-49 (208)
16 3bwz_A Cellulosomal scaffoldin 28.5 30 0.001 26.6 2.2 14 54-67 15-28 (181)
17 3kcp_B Cellulosome anchoring p 28.5 30 0.001 26.8 2.2 35 54-88 29-73 (187)
18 2bm3_A Type 2 cohesin, scaffol 28.2 31 0.001 26.2 2.2 35 54-88 17-61 (166)
19 3mea_A SAGA-associated factor 21.1 59 0.002 24.6 2.6 25 76-102 133-157 (180)
20 1tyj_A Cellulosomal scaffoldin 21.0 42 0.0014 25.6 1.7 14 54-67 11-24 (170)
21 1u4f_A Inward rectifier potass 20.4 75 0.0026 25.5 3.2 36 78-115 19-54 (270)
No 1
>3j21_J 50S ribosomal protein L14P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.2e-44 Score=272.68 Aligned_cols=115 Identities=46% Similarity=0.645 Sum_probs=100.7
Q ss_pred CCCCCCCCcCc-ccceeecccccccEEEEecCCCcceEEEEEEecCCccccCCCCcccCCEEEEEEeecCCCcccceecE
Q 033177 1 MSKRGRGGSAG-NKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPA 79 (125)
Q Consensus 1 ~~~~~~~~~~~-~~~~~~~mIq~~T~L~VaDNSGAk~v~cI~Vl~~~~r~~r~~~A~iGD~I~vsVKk~~p~~Kg~V~kA 79 (125)
|||||+++..+ ++|++++|||.+|+|+|||||||++++||+|++.++.++|+|+|++||+|++|||++.|+.|+|+++|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~mIq~~t~L~VaDNSGAk~v~cI~Vlg~kg~~~r~~~A~iGD~IvvsVKk~~p~~kg~V~kA 80 (141)
T 3j21_J 1 MAKKGAGATRGVSAVRPTRALPVGAYLTVADNSGAKVIQIIGVVEYHGTRRRLASAGVGDMVVATVKKGRPDMRHQVVRA 80 (141)
T ss_dssp ---------CCCCCSBCCCCBCTTCEEEECSSSSEEEEEEEEETTCCCCTTCCCCBCSSCEEEEEEEEECTTTTTCEEEE
T ss_pred CCccccCCccccccccccceeccCCEEEEccCCCCcEEEEEEEcCCCCcccccccCCcCCEEEEEEEecCCCCcCceEEE
Confidence 89999999887 89999999999999999999999999999999987777888999999999999999999999999999
Q ss_pred EEEeeeceeeeCCCcEEEecCceEEEEEcCCceEEE
Q 033177 80 VIVRQRKPWRRKDGVFMYFEGNYSFCILFGSWLMLI 115 (125)
Q Consensus 80 VIVRtKk~~~R~dG~~I~F~dNAvVLin~~~~~~~~ 115 (125)
||||||++++|+||++|+|||||+||||++...++.
T Consensus 81 VIVRtkk~~rR~dGs~i~FddNA~VLin~~g~p~GT 116 (141)
T 3j21_J 81 VIIRQRKEYRRLDGMRVKFEDNAAVIVTPEGVPRGT 116 (141)
T ss_dssp EEEECSSCEECTTSCEECCSSCEEEEBCTTSCBCSS
T ss_pred EEEEeCCccCCCCCcEEEcCCcEEEEECCCCCEeee
Confidence 999999999999999999999999999988766543
No 2
>3u5e_V L17A, YL32, 60S ribosomal protein L23-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_M 1s1i_R 3izs_M* 3j16_I 3o5h_U 3o58_U 3u5i_V 4b6a_V 2x7n_C 3jyw_R 2zkr_k 3iz5_M 3izr_M 4a17_J 4a1a_J 4a1c_J 4a1e_J
Probab=100.00 E-value=2.4e-42 Score=259.06 Aligned_cols=110 Identities=64% Similarity=1.017 Sum_probs=104.2
Q ss_pred CCCcCcccceeecccccccEEEEecCCCcceEEEEEEecCCccccCCCCcccCCEEEEEEeecCCCcccceecEEEEeee
Q 033177 6 RGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~mIq~~T~L~VaDNSGAk~v~cI~Vl~~~~r~~r~~~A~iGD~I~vsVKk~~p~~Kg~V~kAVIVRtK 85 (125)
+++.++.+|+++++||++|+|+|||||||++++||+|++++++++|+++|++||+|++|||++.|++|+|+++|||||||
T Consensus 3 ~~~~~~~~~~~~~gl~~~t~L~VaDNSGAk~v~cI~Vlg~~~r~~r~~~A~iGD~IvvsVK~~~p~~k~~V~~AVIVRtk 82 (137)
T 3u5e_V 3 GNGAQGTKFRISLGLPVGAIMNCADNSGARNLYIIAVKGSGSRLNRLPAASLGDMVMATVKKGKPELRKKVMPAIVVRQA 82 (137)
T ss_dssp CSSCCSCCCCCCCCEETTCEEEECBSSSBCEEEEEEETTCCCCTTCCCEECTTCEEEEECSSBCTTTTTSCEEEEEEECC
T ss_pred ccccCcceeeecccccCCCEEEEeeCCCCcEEEEEEEeCCCCcccccccCCcCCEEEEEEEECCCCCCCcEEEEEEEEec
Confidence 45678899999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred ceeeeCCCcEEEecCceEEEEEcCCceEEE
Q 033177 86 KPWRRKDGVFMYFEGNYSFCILFGSWLMLI 115 (125)
Q Consensus 86 k~~~R~dG~~I~F~dNAvVLin~~~~~~~~ 115 (125)
++++|+||++|+|||||+||||++...++.
T Consensus 83 k~~rR~dG~~i~FddNA~Vlin~~g~p~GT 112 (137)
T 3u5e_V 83 KSWRRRDGVFLYFEDNAGVIANPKGEMKGS 112 (137)
T ss_dssp SCEECTTSCEEEESSCEEEEBCTTCCBSSS
T ss_pred cccCcCCCeEEEcCCceEEEECCCCCEeee
Confidence 999999999999999999999988765543
No 3
>1vq8_K 50S ribosomal protein L14P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.39.1.1 PDB: 1vq4_K* 1vq5_K* 1vq6_K* 1vq7_K* 1s72_K* 1vq9_K* 1vqk_K* 1vql_K* 1vqm_K* 1vqn_K* 1vqo_K* 1vqp_K* 1yhq_K* 1yi2_K* 1yij_K* 1yit_K* 1yj9_K* 1yjn_K* 1yjw_K* 2otj_K* ...
Probab=100.00 E-value=1.9e-41 Score=252.84 Aligned_cols=106 Identities=41% Similarity=0.604 Sum_probs=99.2
Q ss_pred CcccceeecccccccEEEEecCCCcceEEEEEEecCCccccCCCCcccCCEEEEEEeecCCCcccceecEEEEeeeceee
Q 033177 10 AGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWR 89 (125)
Q Consensus 10 ~~~~~~~~~mIq~~T~L~VaDNSGAk~v~cI~Vl~~~~r~~r~~~A~iGD~I~vsVKk~~p~~Kg~V~kAVIVRtKk~~~ 89 (125)
.+.+|++++|||.+|+|+|||||||+.++||+|++.+++++|+|.|++||+|++|||++.|++|+|+++|||||||++++
T Consensus 2 ~~~~~~~~~mIq~~t~l~vaDNSGAk~v~cI~V~g~~g~~~r~p~a~iGD~IvvsVKk~~p~~kg~v~~AVIVRtkk~~r 81 (132)
T 1vq8_K 2 EALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRLPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIR 81 (132)
T ss_dssp CCCSSEECCCEETTCEEEECBSSSEEEEEEEEETTCCCCTTCCCEECTTCEEEEEEEEECTTTTTCEEEEEEEECSSCEE
T ss_pred CCcccccccccccCCEEEEeeCCCCcEEEEEEEeCccCcccccCCCccCcEEEEEEEecCCCCCCcEEEEEEEEcCCCcC
Confidence 45689999999999999999999999999999999777778888899999999999999999999999999999999999
Q ss_pred eCCCcEEEecCceEEEEEcCCceEEE
Q 033177 90 RKDGVFMYFEGNYSFCILFGSWLMLI 115 (125)
Q Consensus 90 R~dG~~I~F~dNAvVLin~~~~~~~~ 115 (125)
|+||++|+|||||+||+|++...++.
T Consensus 82 R~dG~~i~FddNA~Vlin~~g~p~GT 107 (132)
T 1vq8_K 82 RPDGTRVKFEDNAAVIVDENEDPRGT 107 (132)
T ss_dssp CTTSCEEEESSCEEEEECTTSCBSSS
T ss_pred cCCCcEEEeCCceEEEECCCCCEeEE
Confidence 99999999999999999988765543
No 4
>3r8s_K 50S ribosomal protein L14; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_K 3oat_K* 3oas_K* 3ofd_K 3ofc_K 3ofr_K* 3ofz_K* 3og0_K 3ofq_K 3r8t_K 3i1n_K 1p85_I 1p86_I 1vs8_K 1vs6_K 2aw4_K 2awb_K 1vt2_K 2i2v_K 2i2t_K* ...
Probab=100.00 E-value=2.1e-38 Score=233.67 Aligned_cols=92 Identities=33% Similarity=0.431 Sum_probs=86.3
Q ss_pred ccccccEEEEecCCCcceEEEEEEecCCccccCCCCcccCCEEEEEEeecCCCc---ccceecEEEEeeeceeeeCCCcE
Q 033177 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (125)
Q Consensus 19 mIq~~T~L~VaDNSGAk~v~cI~Vl~~~~r~~r~~~A~iGD~I~vsVKk~~p~~---Kg~V~kAVIVRtKk~~~R~dG~~ 95 (125)
|||.+|+|+|||||||++++||+++|++++ ++|++||+|++|||++.|++ |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlgg~~r----~~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 3r8s_K 1 MIQEQTMLNVADNSGARRVMCIKVLGGSHR----RYAGVGDIIKITIKEAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSV 76 (122)
T ss_dssp CBCTTCEEEECBTTSEEEEEEEEECSSSSC----CCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEccCCCCceEEEEEEeCCCCC----CcccCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCcCCCCCCcE
Confidence 999999999999999999999999998766 68999999999999999997 58999999999999999999999
Q ss_pred EEecCceEEEEEcC-CceEE
Q 033177 96 MYFEGNYSFCILFG-SWLML 114 (125)
Q Consensus 96 I~F~dNAvVLin~~-~~~~~ 114 (125)
|+|||||+||+|++ ...++
T Consensus 77 i~FddNa~Vlin~~~g~p~G 96 (122)
T 3r8s_K 77 IRFDGNACVLLNNNSEQPIG 96 (122)
T ss_dssp EEESSCEEEEEETTTEEESC
T ss_pred EEcCCceEEEEeCCCCCEee
Confidence 99999999999998 55444
No 5
>3v2d_O 50S ribosomal protein L14; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_O 2jl6_O 2jl8_O 2v47_O 2v49_O 2wdi_O 2wdj_O 2wdl_O 2wdn_O 2wh2_O 2wh4_O 2wrj_O 2wrl_O 2wro_O 2wrr_O 2x9s_O 2x9u_O 2xg0_O 2xg2_O 2xqe_O ...
Probab=100.00 E-value=1.6e-38 Score=234.29 Aligned_cols=93 Identities=30% Similarity=0.331 Sum_probs=87.3
Q ss_pred ccccccEEEEecCCCcceEEEEEEecCCccccCCCCcccCCEEEEEEeecCCCc---ccceecEEEEeeeceeeeCCCcE
Q 033177 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (125)
Q Consensus 19 mIq~~T~L~VaDNSGAk~v~cI~Vl~~~~r~~r~~~A~iGD~I~vsVKk~~p~~---Kg~V~kAVIVRtKk~~~R~dG~~ 95 (125)
|||.+|+|+|||||||++++||+++|++++ ++|++||+|++|||++.|++ |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~L~vaDNSGAk~v~cI~Vlg~~~r----r~a~iGD~IvvsVK~~~p~~~vKkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 3v2d_O 1 MIQPQTYLEVADNTGARKIMCIRVLKGSNA----KYATVGDVIVASVKEAIPRGAVKEGDVVKAVVVRTKKEIKRPDGSA 76 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEEESTTTC----CCBCTTCEEEEEEEEECSSSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCCCCEEEEeeCCCCcEEEEEEEeCCCCC----cccCCCCEEEEEEEEcCCCCccccCCEEEEEEEEeCCccCCCCCcE
Confidence 999999999999999999999999998666 68999999999999999997 68999999999999999999999
Q ss_pred EEecCceEEEEEcCCceEEE
Q 033177 96 MYFEGNYSFCILFGSWLMLI 115 (125)
Q Consensus 96 I~F~dNAvVLin~~~~~~~~ 115 (125)
++|||||+||+|++...++.
T Consensus 77 i~FddNa~Vlin~~~~p~GT 96 (122)
T 3v2d_O 77 IRFDDNAAVIINNQLEPRGT 96 (122)
T ss_dssp EEESSCEEEEECTTSCBSSS
T ss_pred EEcCCcEEEEECCCCCEeee
Confidence 99999999999998765543
No 6
>3bbo_M Ribosomal protein L14; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=2.7e-38 Score=232.85 Aligned_cols=92 Identities=29% Similarity=0.451 Sum_probs=86.4
Q ss_pred ccccccEEEEecCCCcceEEEEEEecCCccccCCCCcccCCEEEEEEeecCCCc---ccceecEEEEeeeceeeeCCCcE
Q 033177 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (125)
Q Consensus 19 mIq~~T~L~VaDNSGAk~v~cI~Vl~~~~r~~r~~~A~iGD~I~vsVKk~~p~~---Kg~V~kAVIVRtKk~~~R~dG~~ 95 (125)
|||.+|+|+|||||||+.++||+++|++++ ++|++||+|++|||++.|++ |||+++|||||||++++|+||++
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~Vlgg~~~----r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (121)
T 3bbo_M 1 MIQPQTHLNVADNSGARELMCIRIIGASNR----RYARIGDVIVAVIKEAIPNTPLERSEVIRAVVVRTCKELKRDNGMI 76 (121)
T ss_dssp CCCSSCEEEECSSSSEEEEEEEEECSSSCC----CCCCTTCEEEEEEEEECSSSSSCSSCEEEEEEEECSSCEECTTSCE
T ss_pred CCCccCEEEEeeCCCCcEEEEEEEcCCCCc----cccccCcEEEEEEEEccCCCccccCcEEEEEEEEecCccccCCCCE
Confidence 999999999999999999999999996555 58999999999999999998 79999999999999999999999
Q ss_pred EEecCceEEEEEcCCceEE
Q 033177 96 MYFEGNYSFCILFGSWLML 114 (125)
Q Consensus 96 I~F~dNAvVLin~~~~~~~ 114 (125)
++|||||+||+|++...++
T Consensus 77 i~FddNa~Vlin~~g~p~G 95 (121)
T 3bbo_M 77 IRYDDNAAVIIDQEGNPKG 95 (121)
T ss_dssp ECCSSCEEEECCTTSSCSS
T ss_pred EEeCCceEEEECCCCCEeE
Confidence 9999999999998876544
No 7
>1whi_A Ribosomal protein L14; rRNA-binding; 1.50A {Geobacillus stearothermophilus} SCOP: b.39.1.1 PDB: 1giy_N 1ml5_n* 1c04_D 1yl3_N 2b66_O 2b9n_O 2b9p_O 487d_M
Probab=100.00 E-value=3.8e-38 Score=232.25 Aligned_cols=94 Identities=33% Similarity=0.464 Sum_probs=87.2
Q ss_pred ccccccEEEEecCCCcceEEEEEEecCCccccCCCCcccCCEEEEEEeecCCCc---ccceecEEEEeeeceeeeCCCcE
Q 033177 19 GLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDL---RKKVMPAVIVRQRKPWRRKDGVF 95 (125)
Q Consensus 19 mIq~~T~L~VaDNSGAk~v~cI~Vl~~~~r~~r~~~A~iGD~I~vsVKk~~p~~---Kg~V~kAVIVRtKk~~~R~dG~~ 95 (125)
|||.+|+|+|||||||+.++||+++|++++ ++|++||+|++|||++.|++ |||+++||||||+++++|+||++
T Consensus 1 MIq~~t~l~vaDNSGAk~v~cI~vlgg~~~----r~a~iGD~IvvsVK~~~p~~~vkkg~v~~AVIVRtkk~~rR~dG~~ 76 (122)
T 1whi_A 1 MIQQESRLKVADNSGAREVLVIKVLGGSGR----RYANIGDVVVATVKDATPGGVVKKGQVVKAVVVRTKRGVRRPDGSY 76 (122)
T ss_dssp CBCTTCEEEECBSSSEEEEEEEEECSSTTC----CCBCTTCEEEEEEEEECTTSSSCTTCEEEEEEEECSSCEECTTSCE
T ss_pred CCCccCEEEEeECCCCcEEEEEEEcCCCcc----cccccCeEEEEEEEEecCCCccccccEEEEEEEEecCceecCCCCE
Confidence 999999999999999999999999996555 58999999999999999987 48999999999999999999999
Q ss_pred EEecCceEEEEEcCCceEEEE
Q 033177 96 MYFEGNYSFCILFGSWLMLIH 116 (125)
Q Consensus 96 I~F~dNAvVLin~~~~~~~~~ 116 (125)
++|||||+||+|++...++..
T Consensus 77 i~FddNa~Vlin~~g~p~GTr 97 (122)
T 1whi_A 77 IRFDENACVIIRDDKSPRGTR 97 (122)
T ss_dssp ECCSSCEEEEECTTSCBSSSC
T ss_pred EEeCCceEEEECCCCCEeeeE
Confidence 999999999999887665543
No 8
>2ftc_K 39S ribosomal protein L19, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=72.22 E-value=5 Score=27.98 Aligned_cols=34 Identities=12% Similarity=0.191 Sum_probs=26.8
Q ss_pred CCcccCCEEEEEEeecCCCcccceecEEEEeeec
Q 033177 53 PSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRK 86 (125)
Q Consensus 53 ~~A~iGD~I~vsVKk~~p~~Kg~V~kAVIVRtKk 86 (125)
|.-.+||+|.|.++-.-.+.|-|.+.++|+..+.
T Consensus 2 P~f~~GDtv~V~~~i~g~k~R~q~F~GvvI~~~~ 35 (98)
T 2ftc_K 2 PEFYVGSILRVTTADPYASGKISQFLGICIQRSG 35 (98)
T ss_pred CccCCCCEEEEEEEECCCceEeeeEEEEEEEEEC
Confidence 4557999999999876444567999999998654
No 9
>3r8s_P 50S ribosomal protein L19; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_N 1p86_N 2awb_P 2gya_N 2gyc_N 2aw4_P 2i2v_P 2j28_P 2i2t_P* 2qao_P* 2qba_P* 2qbc_P* 2qbe_P 2qbg_P 2qbi_P* 2qbk_P* 2qov_P 2qox_P 2qoz_P* 2qp1_P* ...
Probab=61.64 E-value=9.7 Score=27.22 Aligned_cols=36 Identities=25% Similarity=0.267 Sum_probs=28.5
Q ss_pred CCCCcccCCEEEEEEeecCC-CcccceecEEEEeeec
Q 033177 51 RLPSACVGDMVMATVKKGKP-DLRKKVMPAVIVRQRK 86 (125)
Q Consensus 51 r~~~A~iGD~I~vsVKk~~p-~~Kg~V~kAVIVRtKk 86 (125)
-+|.-.+||+|.|.++-... +.+-|.|.++|+..+.
T Consensus 15 ~iP~f~~GDtv~V~~~i~EG~keRiQ~F~GvvI~~~~ 51 (114)
T 3r8s_P 15 DVPSFRPGDTVEVKVWVVEGSKKRLQAFEGVVIAIRN 51 (114)
T ss_dssp CCCCCCTTCEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred CCCccCCCCEEEEEEEEecCCceeeeeEEEEEEEEEC
Confidence 35888999999999976543 3467899999998764
No 10
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T 2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T 2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Probab=60.42 E-value=13 Score=27.78 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=28.6
Q ss_pred CCCCcccCCEEEEEEeecCCC-cccceecEEEEeeec
Q 033177 51 RLPSACVGDMVMATVKKGKPD-LRKKVMPAVIVRQRK 86 (125)
Q Consensus 51 r~~~A~iGD~I~vsVKk~~p~-~Kg~V~kAVIVRtKk 86 (125)
-+|.-.+||+|.|.++-...+ .+-|.|.++|+.-+.
T Consensus 18 diP~F~~GDtV~V~~~i~EG~keRiQ~FeGvVI~rr~ 54 (146)
T 3v2d_T 18 DLPEFRPGDTVRVSYKVKEGNRTRIQDFEGIVIRIRR 54 (146)
T ss_dssp CCCCCCTTCEEEEEEEEECSSCEEEEEEEEEEEEEEC
T ss_pred cCCCcCCCCEEEEEEEEccCCceeeeeEEEEEEEEEC
Confidence 357889999999999875433 366899999998764
No 11
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=47.67 E-value=26 Score=24.99 Aligned_cols=41 Identities=15% Similarity=0.112 Sum_probs=28.3
Q ss_pred CCcccCCEEEEEEeecCCCcccceecEEEEeeeceeeeCCCcEEEecCceE
Q 033177 53 PSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGNYS 103 (125)
Q Consensus 53 ~~A~iGD~I~vsVKk~~p~~Kg~V~kAVIVRtKk~~~R~dG~~I~F~dNAv 103 (125)
+..++||.|.+. ..-+.-++|.|++.+.+. ...+.|+||+.
T Consensus 4 ~~v~vGq~V~ak------h~ngryy~~~V~~~~~~~----~y~V~F~DgS~ 44 (118)
T 2qqr_A 4 QSITAGQKVISK------HKNGRFYQCEVVRLTTET----FYEVNFDDGSF 44 (118)
T ss_dssp SCCCTTCEEEEE------CTTSSEEEEEEEEEEEEE----EEEEEETTSCE
T ss_pred ceeccCCEEEEE------CCCCCEEeEEEEEEeeEE----EEEEEcCCCCc
Confidence 578899999841 113678899999987663 34566666654
No 12
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N* 1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M* 3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Probab=41.81 E-value=15 Score=27.95 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=27.9
Q ss_pred CCCCcccCCEEEEEEeecCC-CcccceecEEEEeeec
Q 033177 51 RLPSACVGDMVMATVKKGKP-DLRKKVMPAVIVRQRK 86 (125)
Q Consensus 51 r~~~A~iGD~I~vsVKk~~p-~~Kg~V~kAVIVRtKk 86 (125)
-+|.-.+||+|.|.++-... +.|-|.|.+||+.-+.
T Consensus 23 diP~Fr~GDtV~V~vkI~EG~KeRiQ~FeGVVIarr~ 59 (166)
T 2zjr_M 23 QLPDFRPGDTVRVDTKVREGNRTRSQAFEGVVIAING 59 (166)
T ss_dssp CCCCCSSSEEEEEECCTTSSSCCCCEEEECCEEECCC
T ss_pred CCCCcCCCCEEEEEEEEecCCeeeecceEEEEEEEeC
Confidence 35788999999999975543 3467899999997654
No 13
>3bbo_R Ribosomal protein L19; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=34.28 E-value=6.5 Score=31.42 Aligned_cols=36 Identities=17% Similarity=0.354 Sum_probs=29.0
Q ss_pred CCCCcccCCEEEEEEeecCCCcccceecEEEEeeec
Q 033177 51 RLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRK 86 (125)
Q Consensus 51 r~~~A~iGD~I~vsVKk~~p~~Kg~V~kAVIVRtKk 86 (125)
-+|.-.+||+|.|.++-...+.|-|.|.++|+..+.
T Consensus 139 diPeFr~GDtV~V~vkI~E~KeRiQ~FeGVVIarr~ 174 (233)
T 3bbo_R 139 PVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQN 174 (233)
T ss_dssp CCSSSCCCSCCCCCCCBCCCSSCCSCCBCCCCCSCB
T ss_pred CCCccCCCCEEEEEEEeccCcceecceEEEEEEEeC
Confidence 357889999999999766655578999999997654
No 14
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=31.66 E-value=48 Score=23.75 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=27.9
Q ss_pred CCcccCCEEEEEEeecCCCcccceecEEEEeeeceeeeCCCcEEEecCceEE
Q 033177 53 PSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEGNYSF 104 (125)
Q Consensus 53 ~~A~iGD~I~vsVKk~~p~~Kg~V~kAVIVRtKk~~~R~dG~~I~F~dNAvV 104 (125)
+..++||.|.+ +.+ -+.-++|-|++.+... ...+.|+||+.-
T Consensus 5 ~~v~vGq~V~a-----k~~-ngryy~~~V~~~~~~~----~y~V~F~DgS~s 46 (123)
T 2xdp_A 5 KVISVGQTVIT-----KHR-NTRYYSCRVMAVTSQT----FYEVMFDDGSFS 46 (123)
T ss_dssp CCCCTTCCCCC-----CCC-CCCCCCCEEEEEEEEE----EEEEEETTSCEE
T ss_pred cccccCCEEEE-----ECC-CCcEEeEEEEEEeeEE----EEEEEcCCCCcc
Confidence 56789998872 111 2788899998888643 345666666543
No 15
>2gix_A Inward rectifier potassium channel 2; cytoplasmic domains of KIR2.1, andersen'S mutation, metal transport; 2.02A {Mus musculus}
Probab=30.95 E-value=39 Score=25.77 Aligned_cols=37 Identities=11% Similarity=0.050 Sum_probs=28.3
Q ss_pred ecEEEEeeeceeeeCCCcEEEecCceEEEEEcCCceEEE
Q 033177 77 MPAVIVRQRKPWRRKDGVFMYFEGNYSFCILFGSWLMLI 115 (125)
Q Consensus 77 ~kAVIVRtKk~~~R~dG~~I~F~dNAvVLin~~~~~~~~ 115 (125)
-+|++.|-..|.+|.. .|.|.+||+|-.-+|.+.|..
T Consensus 13 ~~~vfakisrP~kRa~--tI~FS~~AVI~~~dG~~~Lmf 49 (208)
T 2gix_A 13 GHCNVQFINVGEKRNE--TLVFSHNAVIAMRDGKLCLMW 49 (208)
T ss_dssp SCBCEEEECCCCSCSC--SEEECSCEEEEEETTEEEEEE
T ss_pred ceEEEEEecCCcccCC--cEEecCeEEEEEeCCEEEEEE
Confidence 3567777777776654 689999999998888876653
No 16
>3bwz_A Cellulosomal scaffoldin adaptor protein B; cohesins II, cellulosome, structural protein; 1.20A {Acetivibrio cellulolyticus} PDB: 3f2l_A 1qzn_A 1zv9_A*
Probab=28.54 E-value=30 Score=26.65 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=12.5
Q ss_pred CcccCCEEEEEEee
Q 033177 54 SACVGDMVMATVKK 67 (125)
Q Consensus 54 ~A~iGD~I~vsVKk 67 (125)
.|++||+|.++||-
T Consensus 15 ~a~VGdIItATi~v 28 (181)
T 3bwz_A 15 TASVGEIVTASINI 28 (181)
T ss_dssp CCCTTCEEEEEEEE
T ss_pred ccccccEEEEEEEe
Confidence 69999999999973
No 17
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=28.52 E-value=30 Score=26.77 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=22.5
Q ss_pred CcccCCEEEEEEeecCC-Cc-------c--cceecEEEEeeecee
Q 033177 54 SACVGDMVMATVKKGKP-DL-------R--KKVMPAVIVRQRKPW 88 (125)
Q Consensus 54 ~A~iGD~I~vsVKk~~p-~~-------K--g~V~kAVIVRtKk~~ 88 (125)
.|++||+|+++||--.- +. | =+|..||=.-|..++
T Consensus 29 ~a~VGdII~ATIkinnI~nfAGYQvNIKYDP~VLqaV~p~TG~~y 73 (187)
T 3kcp_B 29 KGEVGDILIGTVRINNIKNFAGFQVNIVYDPKVLMAVDPETGKEF 73 (187)
T ss_dssp CCCTTCEEEEEEEEESCTTEEEEEEEEECCTTTEEEECTTTCCBC
T ss_pred ceeeccEEEEEEEEcccccccceEEeeeEChhHeeecccCcCCcc
Confidence 68999999999973222 21 2 256666655565554
No 18
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=28.16 E-value=31 Score=26.24 Aligned_cols=35 Identities=29% Similarity=0.394 Sum_probs=23.1
Q ss_pred CcccCCEEEEEEeecC-CCc-------c--cceecEEEEeeecee
Q 033177 54 SACVGDMVMATVKKGK-PDL-------R--KKVMPAVIVRQRKPW 88 (125)
Q Consensus 54 ~A~iGD~I~vsVKk~~-p~~-------K--g~V~kAVIVRtKk~~ 88 (125)
.+++||+|.++||--. .+. | =+|..||=..|-.++
T Consensus 17 ~~~VGdII~Atv~vnnI~nfAGYQvNIKYDP~VLqaVn~~tG~~~ 61 (166)
T 2bm3_A 17 KGEVGDILIGTVRINNIKNFAGFQVNIVYDPKVLMAVDPETGKEF 61 (166)
T ss_dssp CCCTTCEEEEEEEEESCTTEEEEEEEEECCTTTEEEECTTTCCBC
T ss_pred ceeeCCEEEEEEEEcccccccceEEEEEECccceEeecCCcCCcc
Confidence 6899999999997422 222 2 257777766665554
No 19
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=21.07 E-value=59 Score=24.64 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=19.5
Q ss_pred eecEEEEeeeceeeeCCCcEEEecCce
Q 033177 76 VMPAVIVRQRKPWRRKDGVFMYFEGNY 102 (125)
Q Consensus 76 V~kAVIVRtKk~~~R~dG~~I~F~dNA 102 (125)
-|+|+|+.+.+. ..+...++|||..
T Consensus 133 FY~A~V~~~p~~--~~~~y~L~FEdde 157 (180)
T 3mea_A 133 FYRALIHAPPQR--PQDDYSVLFEDTS 157 (180)
T ss_dssp EEEEEEEECCSS--TTCCEEEEEBCTT
T ss_pred eeEEEEecCCCC--CCCcEEEEEcCCC
Confidence 689999998763 3367889999974
No 20
>1tyj_A Cellulosomal scaffoldin; beta sandwich, dockerin-binding module, alpha helix, flaps, structural protein; 1.60A {Bacteroides cellulosolvens} SCOP: b.2.2.2 PDB: 2y3n_A
Probab=21.00 E-value=42 Score=25.59 Aligned_cols=14 Identities=36% Similarity=0.484 Sum_probs=12.4
Q ss_pred CcccCCEEEEEEee
Q 033177 54 SACVGDMVMATVKK 67 (125)
Q Consensus 54 ~A~iGD~I~vsVKk 67 (125)
.|++||+|.++||-
T Consensus 11 ~a~VGdiItATi~v 24 (170)
T 1tyj_A 11 KVAVGDKVTLTINV 24 (170)
T ss_dssp EECTTCEEEEEEEE
T ss_pred ceeeccEEEEEEEE
Confidence 68999999999973
No 21
>1u4f_A Inward rectifier potassium channel 2; cytoplasmic domain, KIR2.1, IRK1, inwardly rectifying K channel, rectification, allergen; 2.41A {Mus musculus}
Probab=20.38 E-value=75 Score=25.46 Aligned_cols=36 Identities=11% Similarity=0.084 Sum_probs=27.2
Q ss_pred cEEEEeeeceeeeCCCcEEEecCceEEEEEcCCceEEE
Q 033177 78 PAVIVRQRKPWRRKDGVFMYFEGNYSFCILFGSWLMLI 115 (125)
Q Consensus 78 kAVIVRtKk~~~R~dG~~I~F~dNAvVLin~~~~~~~~ 115 (125)
+|++.|-..|.+|.. .|.|.++|+|-.-+|.+.|..
T Consensus 19 ~~vFaKiSrPkkRa~--tI~FS~~AVI~~rdG~~~LMf 54 (270)
T 1u4f_A 19 HCNVQFINVGEKRNE--TLVFSHNAVIAMRDGKLCLMW 54 (270)
T ss_dssp CBCEEEESCCCTTTC--SEEECSSEEEEEETTEEEEEE
T ss_pred cEEEEEccCCcCCCc--eEEecCcEEEEEeCCEEEEEE
Confidence 466667666666554 689999999998888877653
Done!