BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033178
MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP
EIFKSTNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSE
SDTDS

High Scoring Gene Products

Symbol, full name Information P value
AT2G40780 protein from Arabidopsis thaliana 1.4e-18
EIF1AD
Probable RNA-binding protein EIF1AD 		protein from Bos taurus 0.00021

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033178
        (125 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2064864 - symbol:AT2G40780 species:3702 "Arabi...   224  1.4e-18   1
UNIPROTKB|Q58CY2 - symbol:EIF1AD "Probable RNA-binding pr...    91  0.00021   1


>TAIR|locus:2064864 [details] [associations]
            symbol:AT2G40780 species:3702 "Arabidopsis thaliana"
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
            initiation factor activity" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006413 "translational initiation" evidence=IEA]
            [GO:0006626 "protein targeting to mitochondrion" evidence=RCA]
            InterPro:IPR001253 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
            SMART:SM00652 EMBL:CP002685 GO:GO:0003743 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 UniGene:At.53090 KO:K15025
            OMA:GESIMQV IPI:IPI00524954 RefSeq:NP_181610.1
            ProteinModelPortal:F4II37 SMR:F4II37 PRIDE:F4II37
            EnsemblPlants:AT2G40780.1 GeneID:818675 KEGG:ath:AT2G40780
            Uniprot:F4II37
        Length = 171

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 48/92 (52%), Positives = 58/92 (63%)

Query:    17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
             GSFVV+D +GKEKA + GSKV  IV KVLF+EQVR LQKS EWPEIFK T    A  S  
Sbjct:    64 GSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEKSSP 123

Query:    77 RQACNHXXXXXXXXXXXXGLPPLEANINRMKP 108
              +  +             G+PPL+AN NR++P
Sbjct:   124 IEQ-HEDDGEVDSSDDDDGMPPLQANTNRLRP 154


>UNIPROTKB|Q58CY2 [details] [associations]
            symbol:EIF1AD "Probable RNA-binding protein EIF1AD"
            species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
            [GO:0003743 "translation initiation factor activity" evidence=IEA]
            InterPro:IPR001253 InterPro:IPR006196 Pfam:PF01176 PROSITE:PS50832
            SMART:SM00652 GO:GO:0005634 GO:GO:0003743 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 EMBL:BT021815 EMBL:BC120113
            EMBL:DQ404153 IPI:IPI00710577 RefSeq:NP_001069861.1 UniGene:Bt.1633
            ProteinModelPortal:Q58CY2 SMR:Q58CY2 PRIDE:Q58CY2
            Ensembl:ENSBTAT00000026889 GeneID:615726 KEGG:bta:615726 CTD:84285
            eggNOG:NOG316136 GeneTree:ENSGT00390000011180 HOGENOM:HOG000007486
            HOVERGEN:HBG097893 InParanoid:Q58CY2 KO:K15025 OMA:AEPQLSG
            OrthoDB:EOG44QT26 NextBio:20899760 Uniprot:Q58CY2
        Length = 166

 Score = 91 (37.1 bits), Expect = 0.00021, P = 0.00021
 Identities = 23/62 (37%), Positives = 31/62 (50%)

Query:    17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
             G F++VD       I++G KV   ++ VL  + VR+LQK   WPE F      D N    
Sbjct:    66 GDFLIVDP------IEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVTEKD-NNDRN 118

Query:    77 RQ 78
             RQ
Sbjct:   119 RQ 120


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.131   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      125       100   0.00091  102 3  11 22  0.43    30
                                                     29  0.47    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  563 (60 KB)
  Total size of DFA:  115 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.87u 0.11s 9.98t   Elapsed:  00:00:01
  Total cpu time:  9.87u 0.11s 9.98t   Elapsed:  00:00:01
  Start:  Fri May 10 17:04:16 2013   End:  Fri May 10 17:04:17 2013

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