BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033178
(125 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359490714|ref|XP_002276446.2| PREDICTED: probable RNA-binding protein EIF1AD-like [Vitis
vinifera]
Length = 192
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 85/129 (65%), Gaps = 22/129 (17%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG-SL 75
GSFVVVDESG+EKA++ GSKVACIV++VLFYEQVR LQKS EWPEIFKST D+NG SL
Sbjct: 64 GSFVVVDESGREKAMESGSKVACIVSQVLFYEQVRVLQKSIEWPEIFKSTLLHDSNGTSL 123
Query: 76 ERQACNHEENDQSESDDDD---------------------GLPPLEANINRMKPMELQTE 114
EE + D + GLPPLEAN+NR++P+ELQ+
Sbjct: 124 HSNTSQQEEFKSTARHDSNGNLHCSTSQQEEDESSSSDDDGLPPLEANMNRIRPLELQSN 183
Query: 115 SESDSESDT 123
+ SDS+SD+
Sbjct: 184 AVSDSDSDS 192
>gi|449457427|ref|XP_004146450.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Cucumis
sativus]
Length = 169
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/107 (60%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVVVDESGK+ A++ GSKVACIV++VL++EQ+R LQKS EWPEIFK+ D N +L+
Sbjct: 64 GSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRNENLQ 123
Query: 77 RQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDT 123
Q N D+ S DDDGLPPLEAN NR KP+ LQ ++ES+S+SD+
Sbjct: 124 AQ-NNQPGEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169
>gi|449491671|ref|XP_004158969.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Cucumis
sativus]
Length = 169
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/107 (59%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVVVDESGK+ A++ GSKVACIV++VL++EQ+R LQKS EWPEIFK+ D + +L+
Sbjct: 64 GSFVVVDESGKKNALESGSKVACIVSRVLYFEQIRELQKSPEWPEIFKNAIVGDRSENLQ 123
Query: 77 RQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDT 123
Q N D+ S DDDGLPPLEAN NR KP+ LQ ++ES+S+SD+
Sbjct: 124 AQ-NNQPVEDEVNSSDDDGLPPLEANTNRAKPLILQPDAESESDSDS 169
>gi|297824017|ref|XP_002879891.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297325730|gb|EFH56150.1| RNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 171
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 82/110 (74%), Gaps = 3/110 (2%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVV+D +GKEKA + GSKV IV KVLF+EQVR LQKS EWPEIFK T A+ S
Sbjct: 64 GSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTKPIPADKSSP 123
Query: 77 RQACNHEENDQSE-SDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 125
+ HE++ + + SDDDDG+PPLEAN NR++P +Q ++E+DS SD+DS
Sbjct: 124 IE--QHEDDGEIDSSDDDDGMPPLEANTNRLRPFGVQCDAETDSGSDSDS 171
>gi|15226743|ref|NP_181610.1| OB-fold nucleic acid binding domain-containing protein [Arabidopsis
thaliana]
gi|330254783|gb|AEC09877.1| OB-fold nucleic acid binding domain-containing protein [Arabidopsis
thaliana]
Length = 171
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%), Gaps = 3/110 (2%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVV+D +GKEKA + GSKV IV KVLF+EQVR LQKS EWPEIFK T A S
Sbjct: 64 GSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEKSSP 123
Query: 77 RQACNHEENDQSE-SDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 125
+ HE++ + + SDDDDG+PPL+AN NR++P ++ ++E+DS SD+DS
Sbjct: 124 IE--QHEDDGEVDSSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDSDS 171
>gi|186506962|ref|NP_001118488.1| OB-fold nucleic acid binding domain-containing protein [Arabidopsis
thaliana]
gi|330254784|gb|AEC09878.1| OB-fold nucleic acid binding domain-containing protein [Arabidopsis
thaliana]
Length = 132
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%), Gaps = 3/110 (2%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVV+D +GKEKA + GSKV IV KVLF+EQVR LQKS EWPEIFK T A S
Sbjct: 25 GSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEKSSP 84
Query: 77 RQACNHEENDQSE-SDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 125
+ HE++ + + SDDDDG+PPL+AN NR++P ++ ++E+DS SD+DS
Sbjct: 85 IE--QHEDDGEVDSSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDSDS 132
>gi|91806343|gb|ABE65899.1| hypothetical protein At2g40780 [Arabidopsis thaliana]
Length = 113
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%), Gaps = 3/110 (2%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVV+D +GKEKA + GSKV IV KVLF+EQVR LQKS EWPEIFK T A S
Sbjct: 6 GSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEKSSP 65
Query: 77 RQACNHEENDQSE-SDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 125
+ HE++ + + SDDDDG+PPL+AN NR++P ++ ++E+DS SD+DS
Sbjct: 66 IE--QHEDDGEVDSSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDSDS 113
>gi|116831155|gb|ABK28532.1| unknown [Arabidopsis thaliana]
Length = 114
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 81/110 (73%), Gaps = 3/110 (2%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVV+D +GKEKA + GSKV IV KVLF+EQVR LQKS EWPEIFK T A S
Sbjct: 6 GSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTRPIPAEKSSP 65
Query: 77 RQACNHEENDQSE-SDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 125
+ HE++ + + SDDDDG+PPL+AN NR++P ++ ++E+DS SD+DS
Sbjct: 66 IE--QHEDDGEVDSSDDDDGMPPLQANTNRLRPFGVKCDAETDSGSDSDS 113
>gi|351723419|ref|NP_001237534.1| uncharacterized protein LOC100306612 [Glycine max]
gi|255629065|gb|ACU14877.1| unknown [Glycine max]
Length = 171
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/97 (60%), Positives = 73/97 (75%), Gaps = 5/97 (5%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVVVDESGKEKA++ GSKVAC+V++VLF +QVR L+KS EWPE FKS DD S+E
Sbjct: 66 GSFVVVDESGKEKALESGSKVACLVSQVLFSKQVRELEKSPEWPESFKSAMVDD---SIE 122
Query: 77 RQACNHEENDQSESDDDDGLPPLEANINRMKPMELQT 113
+ ++ + E DDDGLPPLEAN NR++P ELQ
Sbjct: 123 --STTSQQEHELEGSDDDGLPPLEANTNRIRPAELQA 157
>gi|357114396|ref|XP_003558986.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Brachypodium
distachyon]
Length = 164
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/95 (56%), Positives = 74/95 (77%), Gaps = 5/95 (5%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
G+FVVVD SG+++A++ GSK+AC+V++VLF++QVRAL+KS EWP IFKST++ A G+
Sbjct: 65 GNFVVVDASGRDEALESGSKIACVVSRVLFHDQVRALEKSGEWPAIFKSTSNAWATGTTS 124
Query: 77 RQACNHEENDQSESDDDDGLPPLEANINRMKPMEL 111
+ EE SE DDDD LPPLEAN NR +P+E+
Sbjct: 125 KV----EEELNSEEDDDD-LPPLEANTNRNRPVEV 154
>gi|297823625|ref|XP_002879695.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297325534|gb|EFH55954.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 172
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 76/109 (69%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVV+D +GKEKA + GSKV IV KVLF+EQVR LQKS EWPEIFK T A+ S
Sbjct: 64 GSFVVIDHTGKEKAQESGSKVTSIVCKVLFFEQVRLLQKSPEWPEIFKDTKPIPADKSSP 123
Query: 77 RQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 125
+ + S DDDDG+PPLEAN NR++P +Q +E+DS SD+DS
Sbjct: 124 IEQHEDDGEIDSSDDDDDGMPPLEANTNRLRPFGVQCTAETDSGSDSDS 172
>gi|326531014|dbj|BAK04858.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 168
Score = 100 bits (250), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 55/105 (52%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
G+FVVVD SG+++A++ GSK+AC+V++VLF++QVRAL+KS EWP IFKST + A G E
Sbjct: 65 GNFVVVDASGRDEALESGSKIACVVSRVLFHDQVRALEKSGEWPAIFKSTPNGWATGP-E 123
Query: 77 RQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSES 121
EE S+ D+DD +PPLEAN NR +P ++ +++E DS+S
Sbjct: 124 GTTSQVEEEQNSDEDEDDDMPPLEANTNRNRPFDVHSDTECDSDS 168
>gi|302143926|emb|CBI23031.3| unnamed protein product [Vitis vinifera]
Length = 144
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 52/58 (89%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGS 74
GSFVVVDESG+EKA++ GSKVACIV++VLFYEQVR LQKS EWPEIFKST D+NG+
Sbjct: 64 GSFVVVDESGREKAMESGSKVACIVSQVLFYEQVRVLQKSIEWPEIFKSTLLHDSNGT 121
>gi|195652277|gb|ACG45606.1| RNA binding protein [Zea mays]
Length = 130
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVVVD SG+++A++ GSK+AC+V++VLF+EQVRALQKS WP IF S + +
Sbjct: 25 GSFVVVDASGRDQALESGSKIACVVSRVLFHEQVRALQKSGNWPAIFNSAPTPNEASEAG 84
Query: 77 RQACNHE-ENDQSESDDDDGLPPLEANINRMKPMELQTESESDSES 121
+A + + + ++DD LPPLEAN NR +P EL ++S+S S++
Sbjct: 85 AEAQAAQVDEEPDSDEEDDDLPPLEANTNRNRPYELYSDSDSGSDA 130
>gi|226497076|ref|NP_001149105.1| RNA binding protein [Zea mays]
gi|195624754|gb|ACG34207.1| RNA binding protein [Zea mays]
gi|195627448|gb|ACG35554.1| RNA binding protein [Zea mays]
gi|223949329|gb|ACN28748.1| unknown [Zea mays]
gi|414864342|tpg|DAA42899.1| TPA: RNA binding protein [Zea mays]
Length = 170
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFVVVD SG+++A++ GSK+AC+V++VLF+EQVRALQKS WP IF S + +
Sbjct: 65 GSFVVVDASGRDQALESGSKIACVVSRVLFHEQVRALQKSGNWPAIFNSAPTPNEASEAG 124
Query: 77 RQACNHE-ENDQSESDDDDGLPPLEANINRMKPMELQTESESDSES 121
+A + + + ++DD LPPLEAN NR +P EL ++S+S S++
Sbjct: 125 AEAQAAQVDEEPDSDEEDDDLPPLEANTNRNRPYELYSDSDSGSDA 170
>gi|115450283|ref|NP_001048742.1| Os03g0114200 [Oryza sativa Japonica Group]
gi|27476090|gb|AAO17021.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108705834|gb|ABF93629.1| LOC496359 protein, putative, expressed [Oryza sativa Japonica
Group]
gi|113547213|dbj|BAF10656.1| Os03g0114200 [Oryza sativa Japonica Group]
gi|125542126|gb|EAY88265.1| hypothetical protein OsI_09718 [Oryza sativa Indica Group]
gi|215765975|dbj|BAG98203.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624072|gb|EEE58204.1| hypothetical protein OsJ_09157 [Oryza sativa Japonica Group]
Length = 167
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 81/105 (77%), Gaps = 1/105 (0%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
G+FVVVD SG+++A++ GSK+AC+V++VLF++QVRA++KS EWP IFKST+ + + +
Sbjct: 64 GNFVVVDASGRDQALESGSKIACVVSQVLFHDQVRAMEKSEEWPAIFKSTSKEGSEAGTQ 123
Query: 77 RQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSES 121
+ + ++ +SD+DD LPPLEAN NR +P EL +SESDS+S
Sbjct: 124 -EGTRPQIEEEPDSDEDDDLPPLEANTNRQRPFELYADSESDSDS 167
>gi|116780924|gb|ABK21882.1| unknown [Picea sitchensis]
Length = 178
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/117 (41%), Positives = 71/117 (60%), Gaps = 10/117 (8%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFK--------STNS 68
G++V+V+ES +E+A++ G+KV C + +VLF EQVR L+KS+ WP+ F +T
Sbjct: 64 GNYVLVEESDRERALEAGNKVTCAIVQVLFEEQVRTLRKSSRWPQGFNVDKRSAVTATAG 123
Query: 69 DDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 125
DAN + + + E+ E D+GLPPLEAN NR P EL S + SD+DS
Sbjct: 124 SDAN--VHKLDLHSEKEQYEEYSSDEGLPPLEANCNRHYPRELHLTSNEEETSDSDS 178
>gi|242037195|ref|XP_002465992.1| hypothetical protein SORBIDRAFT_01g049700 [Sorghum bicolor]
gi|241919846|gb|EER92990.1| hypothetical protein SORBIDRAFT_01g049700 [Sorghum bicolor]
Length = 168
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 79/105 (75%), Gaps = 1/105 (0%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
GSFV VD SG+++A++ GSK+AC+V++VLF+EQVRAL+KS WP IF ST ++ + +
Sbjct: 65 GSFVAVDASGRDQALESGSKIACVVSQVLFHEQVRALEKSGNWPAIFSSTTNEASEAGTQ 124
Query: 77 RQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSES 121
Q + +++ +SD+DD LPPLEAN NR +P EL ++S+S S++
Sbjct: 125 AQTA-AQIDEEPDSDEDDDLPPLEANTNRNRPYELYSDSDSGSDA 168
>gi|168046288|ref|XP_001775606.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162673024|gb|EDQ59553.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 170
Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/115 (46%), Positives = 68/115 (59%), Gaps = 5/115 (4%)
Query: 10 KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTE-WPEIFK--ST 66
K ++ G+ V+VDE+ +EKAI+ GSKV VT+VL +Q RAL+KS WPE FK
Sbjct: 58 KTIWVKTGTIVIVDEADREKAIEAGSKVTGTVTRVLLEDQARALRKSVSWWPESFKDERV 117
Query: 67 NSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSES 121
S DA G ER E ++S DDDGLPPLEAN+NR M +SD S
Sbjct: 118 ASKDAKG--ERDGDGGESGEESCESDDDGLPPLEANLNRKHAMSTYEYVDSDDSS 170
>gi|414864343|tpg|DAA42900.1| TPA: hypothetical protein ZEAMMB73_687067, partial [Zea mays]
Length = 224
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 74/127 (58%), Gaps = 22/127 (17%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEW----------------- 59
GSFVVVD SG+++A++ GSK+AC+V++VLF+EQVRALQKS
Sbjct: 98 GSFVVVDASGRDQALESGSKIACVVSRVLFHEQVRALQKSGNCILLILTYGIGCSDQFVP 157
Query: 60 ----PEIFKSTNSDDANGSLERQACNHE-ENDQSESDDDDGLPPLEANINRMKPMELQTE 114
P IF S + + +A + + + ++DD LPPLEAN NR +P EL ++
Sbjct: 158 SYVRPAIFNSAPTPNEASEAGAEAQAAQVDEEPDSDEEDDDLPPLEANTNRNRPYELYSD 217
Query: 115 SESDSES 121
S+S S++
Sbjct: 218 SDSGSDA 224
>gi|414884277|tpg|DAA60291.1| TPA: hypothetical protein ZEAMMB73_138934 [Zea mays]
Length = 146
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 34/41 (82%)
Query: 16 AGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKS 56
GSF+ V+ G+++A++ GSK+ +V++VLF+EQV+AL+KS
Sbjct: 88 GGSFMFVNAIGRDQALESGSKIVYVVSQVLFHEQVQALEKS 128
>gi|302766455|ref|XP_002966648.1| hypothetical protein SELMODRAFT_407703 [Selaginella moellendorffii]
gi|300166068|gb|EFJ32675.1| hypothetical protein SELMODRAFT_407703 [Selaginella moellendorffii]
Length = 123
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 10/106 (9%)
Query: 23 DESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLERQACNH 82
+E+ ++K + +KV I+++VL+ + V+ LQK+ WP+ F+ T + G + + N
Sbjct: 23 EEADRQKLLDANAKVTGIISQVLYRDHVKELQKTGCWPKGFQLT---EPKGCSQPASTNK 79
Query: 83 ----EENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDTD 124
E + SD++D LP LE N NR + L S SESD D
Sbjct: 80 DLQVEPASGNSSDEEDDLPALEQNTNRSRGGTLYL---SSSESDED 122
>gi|413939178|gb|AFW73729.1| hypothetical protein ZEAMMB73_109619 [Zea mays]
Length = 445
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 59 WPEIFKSTNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMEL 111
WP IF ST ++ + Q + +++ SD+DD LPPLEAN NR +P EL
Sbjct: 388 WPTIFNSTLNEALEAGTQAQT-TVQIDEEPGSDEDDDLPPLEANTNRNRPYEL 439
>gi|428182430|gb|EKX51291.1| hypothetical protein GUITHDRAFT_85170 [Guillardia theta CCMP2712]
Length = 179
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 4/59 (6%)
Query: 10 KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 68
K+V+ G F++V + KE + SKVA ++ +LF EQV+ L+K + WP F ST S
Sbjct: 61 KVVWAQRGDFLIVAPNAKE----ESSKVAATISHILFPEQVQHLRKLSCWPAGFDSTES 115
>gi|303285654|ref|XP_003062117.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226456528|gb|EEH53829.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 210
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 46/102 (45%), Gaps = 28/102 (27%)
Query: 34 GSKVACIVTKVLFYEQVRALQKST--EWPEIF--------------------------KS 65
GSKV + +VL+ EQ++ L+++ WPE F ++
Sbjct: 86 GSKVTGELLRVLYAEQIKELRRARPEAWPERFGTGRGGGGGADDDDGDAGVDDAVGGVRA 145
Query: 66 TNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMK 107
DA E +A E + SDDDDGLPPLEAN NR +
Sbjct: 146 MRFGDAAAEAEAEAEAEAEAEAEASDDDDGLPPLEANTNRRR 187
>gi|62859797|ref|NP_001016696.1| probable RNA-binding protein EIF1AD [Xenopus (Silurana) tropicalis]
gi|123906178|sp|Q0V9J5.1|EIF1A_XENTR RecName: Full=Probable RNA-binding protein EIF1AD; AltName:
Full=Eukaryotic translation initiation factor 1A
domain-containing protein
gi|111309083|gb|AAI21519.1| hypothetical protein LOC549450 [Xenopus (Silurana) tropicalis]
Length = 179
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 22/116 (18%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I +G KV + +L+ + R LQK WP
Sbjct: 53 MPTKFRKNIWI---KRGDFLIVD------PIAEGEKVKAEIAFILYKDHQRLLQKEGLWP 103
Query: 61 EIFKS------TNSDDANGSLERQACN----HEENDQSESDDDDGLPPLEANINRM 106
E F T ++ NG +A + E+ + SE+DDD GL N NR+
Sbjct: 104 EGFTQDKTGVVTKENENNGIQSTEALSTAQAKEQGEDSETDDDSGLF---VNTNRV 156
>gi|195386456|ref|XP_002051920.1| GJ17268 [Drosophila virilis]
gi|194148377|gb|EDW64075.1| GJ17268 [Drosophila virilis]
Length = 165
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP+ K V+ G +V+V+ I +G KV + K+L E V+ K+ WP
Sbjct: 58 MPNKFR---KNVWVKRGDYVLVE------PIAEGDKVKAEICKILTPEHVKEYTKAGIWP 108
Query: 61 EIFKSTNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQ 112
+ F + S A+ S + A H S+SD DD LPP N NR P+ +Q
Sbjct: 109 QRF-AKKSAQASQSPDNAAAEH-----SDSDTDDSLPP---NTNR--PVNVQ 149
>gi|195114394|ref|XP_002001752.1| GI15299 [Drosophila mojavensis]
gi|193912327|gb|EDW11194.1| GI15299 [Drosophila mojavensis]
Length = 162
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 20/105 (19%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP+ K V+ G +++V+ I++G KV ++K+L E ++ K+ WP
Sbjct: 56 MPNKFR---KNVWVKRGDYILVE------PIEEGDKVKAEISKILTPEHIKEFTKAGIWP 106
Query: 61 EIFKSTNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINR 105
E F + ++ + E + S SD DD LPP N NR
Sbjct: 107 ERFAKKPTTPSSKA--------EHSGASGSDSDDSLPP---NTNR 140
>gi|348565019|ref|XP_003468301.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Cavia
porcellus]
Length = 165
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 13/100 (13%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VRALQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRALQKEGFWP 103
Query: 61 EIFKSTNSDDANGSLERQ----ACNHEENDQSESDDDDGL 96
E F D N + + Q A ++S S+DD L
Sbjct: 104 EAFSEVAEKDNNRNRQAQPELPAEPQSSGEESGSEDDSDL 143
>gi|443734707|gb|ELU18588.1| hypothetical protein CAPTEDRAFT_139957, partial [Capitella teleta]
Length = 1270
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 39/79 (49%)
Query: 16 AGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSL 75
A S V++DE G A DG+ +AC V + L + R L + + + ++S DA+ L
Sbjct: 1107 AHSLVLLDELGSGTATYDGTAIACAVVRELCERRCRTLFSTHYHSLVEEFSSSHDASVRL 1166
Query: 76 ERQACNHEENDQSESDDDD 94
AC EE ++D D
Sbjct: 1167 GHMACMVEEAPADDTDSSD 1185
>gi|387018170|gb|AFJ51203.1| putative RNA-binding protein EIF1AD-like [Crotalus adamanteus]
Length = 168
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 20/112 (17%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL+ + VR L+K WP
Sbjct: 53 MPTKFRKNIWI---KRGDFLLVD------PIEEGEKVKAEISFVLYKDHVRYLKKEGYWP 103
Query: 61 EIF------KSTNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRM 106
+ F +N+ ++ LE + E D SE DD D L N NR+
Sbjct: 104 DAFLGDVKGTRSNTKESREGLESTPQSSGEQD-SEDDDTD----LFVNTNRI 150
>gi|328772179|gb|EGF82218.1| hypothetical protein BATDEDRAFT_23639 [Batrachochytrium
dendrobatidis JAM81]
Length = 197
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 10 KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSD 69
KL++ GSFV+V+ K +KV + VLF + ++ L+ ++WP +F+ +
Sbjct: 89 KLIWIKKGSFVIVNLEPDSK-----TKVKAEIAHVLFPDNIKYLKSISKWPSVFEEELAT 143
Query: 70 DANGSLE-RQACNHEENDQSES 90
+ SL R+AC+ E D+ ++
Sbjct: 144 IVDCSLSNREACSTAEADKRDT 165
>gi|213688745|gb|ACJ53922.1| eukaryotic translation initiation factor 1A domain [Bubalus
bubalis]
Length = 107
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 10 KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSD 69
K ++ G F++VD I++G KV ++ VL + VR+LQK WPE F
Sbjct: 5 KNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWPEAFSQVAEK 58
Query: 70 DAN 72
D N
Sbjct: 59 DNN 61
>gi|148225134|ref|NP_001088978.1| probable RNA-binding protein EIF1AD [Xenopus laevis]
gi|82231599|sp|Q5HZM1.1|EIF1A_XENLA RecName: Full=Probable RNA-binding protein EIF1AD; AltName:
Full=Eukaryotic translation initiation factor 1A
domain-containing protein
gi|57033141|gb|AAH88961.1| LOC496359 protein [Xenopus laevis]
Length = 169
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I +G KV + +L+ + R LQK WP
Sbjct: 53 MPTKFRKNIWI---KRGDFLIVD------PIVEGEKVKAEIAFILYKDHQRLLQKEGLWP 103
Query: 61 EIFKSTNSD------DANGSLERQACNHEENDQSESDDDDGL 96
E F + +++G +A + + SE+DDD GL
Sbjct: 104 EGFTQDKTGLVAKEKESSGIQSTEAQAKPQGEDSETDDDSGL 145
>gi|301117640|ref|XP_002906548.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262107897|gb|EEY65949.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 196
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 10/92 (10%)
Query: 10 KLVFNCAGSFVVVDES-GKEKAIKDGSK--VACIVTKVLFYEQVRALQKSTEWPEIFKST 66
KL++ G F++V E G E G K V IV +L+ EQ++ L++ WP F
Sbjct: 63 KLIWVKRGDFLIVGEGDGGETTTATGKKGAVTSIVEHILYKEQIKNLKRKELWPATF--- 119
Query: 67 NSDDANGSLERQACN---HEENDQSESDDDDG 95
D G Q N EE E+DD G
Sbjct: 120 -DDSPTGPAWTQGDNVNDDEEQKGGENDDVGG 150
>gi|88866330|gb|ABD57202.1| hypothetical protein MGC11102 [Bos taurus]
Length = 137
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 24 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWP 74
Query: 61 EIFKSTNSDDAN 72
E F D N
Sbjct: 75 EAFSQVTEKDNN 86
>gi|75069838|sp|Q58CY2.1|EIF1A_BOVIN RecName: Full=Probable RNA-binding protein EIF1AD; AltName:
Full=Eukaryotic translation initiation factor 1A
domain-containing protein
gi|61555113|gb|AAX46662.1| hypothetical protein MGC11102 [Bos taurus]
gi|296471475|tpg|DAA13590.1| TPA: probable RNA-binding protein EIF1AD [Bos taurus]
Length = 166
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWP 103
Query: 61 EIFKSTNSDDAN 72
E F D N
Sbjct: 104 EAFSQVTEKDNN 115
>gi|115497072|ref|NP_001069861.1| probable RNA-binding protein EIF1AD [Bos taurus]
gi|111308535|gb|AAI20114.1| Eukaryotic translation initiation factor 1A domain containing [Bos
taurus]
Length = 166
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWP 103
Query: 61 EIFKSTNSDDAN 72
E F D N
Sbjct: 104 EAFSQVTEKDNN 115
>gi|410913369|ref|XP_003970161.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Takifugu
rubripes]
Length = 178
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 20/93 (21%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G FV+VD I++G KV ++ +L+ + V+ L+K +WP
Sbjct: 53 MPTKFRKNIWI---KRGDFVIVD------PIEEGEKVKAEISSILYKDHVQHLKKQQQWP 103
Query: 61 EIFKSTNSDDANGSLERQACNHEENDQSESDDD 93
E G +E Q + N+Q + +D
Sbjct: 104 E-----------GFMEEQPVQDKTNNQQQQQED 125
>gi|440907372|gb|ELR57526.1| Putative RNA-binding protein EIF1AD [Bos grunniens mutus]
Length = 166
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWP 103
Query: 61 EIFKSTNSDDAN 72
E F D N
Sbjct: 104 EAFSQVTEKDNN 115
>gi|194766455|ref|XP_001965340.1| GF24643 [Drosophila ananassae]
gi|190617950|gb|EDV33474.1| GF24643 [Drosophila ananassae]
Length = 162
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 52/109 (47%), Gaps = 22/109 (20%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
G F++++ I++G KV + K+L E V+ K+ WPE F +G E
Sbjct: 72 GDFLLIE------PIEEGDKVKAEICKILTTEHVKEYTKAGIWPEKFTK-----KSGQEE 120
Query: 77 RQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESDTDS 125
A N Q +SD +D LPP N NR P+ + ES + E DT S
Sbjct: 121 TSAQN-----QDDSDFEDDLPP---NTNR--PV-INQESSGEDEDDTSS 158
>gi|426252058|ref|XP_004019735.1| PREDICTED: probable RNA-binding protein EIF1AD [Ovis aries]
Length = 166
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G FV+VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFVIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F S ++ N + RQ
Sbjct: 104 EAF-SQVAEKHNNNRNRQ 120
>gi|354494728|ref|XP_003509487.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Cricetulus
griseus]
gi|344243252|gb|EGV99355.1| putative RNA-binding protein EIF1AD [Cricetulus griseus]
Length = 171
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWP 103
Query: 61 EIF----KSTNSDDANGSLERQACNHEENDQSESDDDDGL 96
E F + NS + E A D+S S+DD L
Sbjct: 104 EAFSEVAEKQNSMNRQSQPELPAEPQLSGDESGSEDDSDL 143
>gi|291385441|ref|XP_002709288.1| PREDICTED: eukaryotic translation initiation factor 1A domain
containing-like [Oryctolagus cuniculus]
Length = 187
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 72
G F++VD I++G KV + VL + VR+LQ+ WPE F + D +N
Sbjct: 89 GDFLIVD------PIEEGEKVKAEICFVLCKDHVRSLQREGRWPEAFSAVAEDHSN 138
>gi|357519583|ref|XP_003630080.1| Putative metal-binding domain in RNase L inhibitor RLI family
protein [Medicago truncatula]
gi|355524102|gb|AET04556.1| Putative metal-binding domain in RNase L inhibitor RLI family
protein [Medicago truncatula]
Length = 273
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 21/25 (84%)
Query: 82 HEENDQSESDDDDGLPPLEANINRM 106
+E+NDQ+ SD DDGLPPLE N+N +
Sbjct: 239 NEDNDQNSSDSDDGLPPLERNMNHL 263
>gi|442751331|gb|JAA67825.1| Hypothetical protein [Ixodes ricinus]
Length = 158
Score = 38.1 bits (87), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G FV+V+ I++G KV + ++L+ EQV+ +++ +WP
Sbjct: 53 MPTKFRKNI---WVKRGDFVIVE------PIEEGDKVKAEIVRILYREQVKYIKEEGKWP 103
Query: 61 EIFKSTNSDDANGSLERQAC 80
+ F + +A G ER+
Sbjct: 104 KAF---DDSEAKGDAERRGL 120
>gi|58037183|ref|NP_081512.1| probable RNA-binding protein EIF1AD [Mus musculus]
gi|166224369|sp|Q3THJ3.2|EIF1A_MOUSE RecName: Full=Probable RNA-binding protein EIF1AD; AltName:
Full=Eukaryotic translation initiation factor 1A
domain-containing protein
gi|22137613|gb|AAH24640.1| Eukaryotic translation initiation factor 1A domain containing [Mus
musculus]
gi|74139911|dbj|BAE31794.1| unnamed protein product [Mus musculus]
gi|74186531|dbj|BAE34752.1| unnamed protein product [Mus musculus]
gi|74219745|dbj|BAE40465.1| unnamed protein product [Mus musculus]
gi|148701169|gb|EDL33116.1| RIKEN cDNA 2010003J03 [Mus musculus]
Length = 170
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F N + E Q
Sbjct: 104 EAFSEVAEKQNNMNRESQ 121
>gi|149062053|gb|EDM12476.1| similar to 2010003J03Rik protein, isoform CRA_b [Rattus
norvegicus]
Length = 115
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL VR+LQK WP
Sbjct: 1 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWP 51
Query: 61 EIFKSTNSDDANGSLERQ 78
E F N + E Q
Sbjct: 52 EAFSEVAEKQNNVNRESQ 69
>gi|417396427|gb|JAA45247.1| Putative translation initiation factor related to eif-1a [Desmodus
rotundus]
Length = 166
Score = 37.7 bits (86), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
G F++VD I++G KV ++ VL + VR+LQK WPE F S ++ N +
Sbjct: 66 GDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWPEAF-SEVAERHNNNRN 118
Query: 77 RQA 79
RQA
Sbjct: 119 RQA 121
>gi|56605692|ref|NP_001008306.1| probable RNA-binding protein EIF1AD [Rattus norvegicus]
gi|81910042|sp|Q5RKI6.1|EIF1A_RAT RecName: Full=Probable RNA-binding protein EIF1AD; AltName:
Full=Eukaryotic translation initiation factor 1A
domain-containing protein
gi|55715996|gb|AAH85818.1| Eukaryotic translation initiation factor 1A domain containing
[Rattus norvegicus]
gi|149062052|gb|EDM12475.1| similar to 2010003J03Rik protein, isoform CRA_a [Rattus norvegicus]
Length = 167
Score = 37.7 bits (86), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F N + E Q
Sbjct: 104 EAFSEVAEKQNNVNRESQ 121
>gi|344295858|ref|XP_003419627.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Loxodonta
africana]
Length = 166
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F S ++ N S RQ
Sbjct: 104 EAF-SEVAEKHNNSRNRQ 120
>gi|330846009|ref|XP_003294850.1| hypothetical protein DICPUDRAFT_159921 [Dictyostelium purpureum]
gi|325074606|gb|EGC28627.1| hypothetical protein DICPUDRAFT_159921 [Dictyostelium purpureum]
Length = 171
Score = 37.7 bits (86), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 17/103 (16%)
Query: 10 KLVFNCAGSFVVVD---ESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF--K 64
K+++ G++ +VD ES K+ V C+V+ +L E ++ L KS EWP+ F +
Sbjct: 57 KVLWIKKGNYAIVDKEDESSKQ--------VRCVVSHILSKENIKGLVKSNEWPKEFELE 108
Query: 65 STNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMK 107
N N + RQ ++ + ++ DD G+ N NR K
Sbjct: 109 DKNQRQNNNIVNRQILMNDGDSDEDNFDDLGM----GNPNRKK 147
>gi|410974540|ref|XP_003993702.1| PREDICTED: probable RNA-binding protein EIF1AD [Felis catus]
Length = 166
Score = 37.7 bits (86), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWP 103
Query: 61 EIFKSTNSDDANGSLERQA 79
E F S ++ N S RQ
Sbjct: 104 EAF-SEVAEKHNNSRNRQT 121
>gi|12842024|dbj|BAB25440.1| unnamed protein product [Mus musculus]
Length = 170
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD +++G KV ++ VL VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PVEEGEKVKAEISFVLCKNHVRSLQKEGHWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F N + E Q
Sbjct: 104 EAFSEVAEKQNNMNRESQ 121
>gi|351710854|gb|EHB13773.1| Putative RNA-binding protein EIF1AD [Heterocephalus glaber]
Length = 166
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 14/101 (13%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGYWP 103
Query: 61 EIF-----KSTNSDDANGSLERQACNHEENDQSESDDDDGL 96
E F K +++ + E A ++S S+DD L
Sbjct: 104 EAFSEVAEKGSSNRNRQTQPELPAEPQSSGEESGSEDDSDL 144
>gi|444724535|gb|ELW65138.1| putative RNA-binding protein EIF1AD [Tupaia chinensis]
Length = 167
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGHWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EAF 106
>gi|332250254|ref|XP_003274267.1| PREDICTED: probable RNA-binding protein EIF1AD [Nomascus
leucogenys]
Length = 163
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 9 IKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNS 68
+ +F G F++VD I++G KV ++ VL + VR+LQK WPE F S +
Sbjct: 55 LPFLFLPTGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEGF-SEVA 107
Query: 69 DDANGSLERQ 78
+ N + RQ
Sbjct: 108 EKHNNNRNRQ 117
>gi|126338896|ref|XP_001379488.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Monodelphis
domestica]
Length = 163
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 72
G F++VD I++G KV ++ VL + VR+LQK WPE F N
Sbjct: 66 GDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWPEAFSEVAKKQGN 115
>gi|443927451|gb|ELU45935.1| eIF-1a domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 188
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 12/106 (11%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
+P N +V+ GS+V+VD + GS V +T VL + + L+K EWP
Sbjct: 93 LPKRFRN---IVWVRRGSYVLVDTTHGST----GSNVKGEITFVLQKDHIADLKKRGEWP 145
Query: 61 -EIFKSTNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINR 105
+I +S NS++ E +A + +E D+++ D P L N NR
Sbjct: 146 IKIEESQNSEEQTIDDELEASHSDEGDETDESD----PDLFKNPNR 187
>gi|395544520|ref|XP_003774157.1| PREDICTED: probable RNA-binding protein EIF1AD [Sarcophilus
harrisii]
Length = 161
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 72
G F++VD I++G KV ++ VL + VR+LQK WPE F +N
Sbjct: 64 GDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWPEAFSEVAEKQSN 113
>gi|114638634|ref|XP_508567.2| PREDICTED: probable RNA-binding protein EIF1AD [Pan troglodytes]
gi|397516985|ref|XP_003828700.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 1 [Pan
paniscus]
gi|397516987|ref|XP_003828701.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 2 [Pan
paniscus]
gi|410225860|gb|JAA10149.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410225862|gb|JAA10150.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410225864|gb|JAA10151.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410225866|gb|JAA10152.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410266570|gb|JAA21251.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410266572|gb|JAA21252.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410293038|gb|JAA25119.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410293040|gb|JAA25120.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410293042|gb|JAA25121.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410293044|gb|JAA25122.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410293046|gb|JAA25123.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410352755|gb|JAA42981.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
gi|410352757|gb|JAA42982.1| eukaryotic translation initiation factor 1A domain containing [Pan
troglodytes]
Length = 166
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F S ++ N + RQ
Sbjct: 104 EAF-SEVAEKHNNNRNRQ 120
>gi|57099659|ref|XP_533226.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 1 [Canis
lupus familiaris]
Length = 166
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F S ++ N + RQ
Sbjct: 104 EAF-SEVAEKHNNNRNRQ 120
>gi|241123153|ref|XP_002403797.1| conserved hypothetical protein [Ixodes scapularis]
gi|215493533|gb|EEC03174.1| conserved hypothetical protein [Ixodes scapularis]
Length = 140
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G FV+V+ I++G KV + ++L+ EQV+ +++ +WP
Sbjct: 37 MPTKFRKNI---WVKRGDFVIVE------PIEEGDKVKAEIVRILYREQVKYIKEEGKWP 87
Query: 61 EIF 63
+ F
Sbjct: 88 KAF 90
>gi|432091106|gb|ELK24318.1| Putative RNA-binding protein EIF1AD [Myotis davidii]
Length = 165
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 72
G F++VD I++G KV ++ VL + VR+LQK WPE F+ + N
Sbjct: 66 GDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGLWPEAFEVAEKHNNN 115
>gi|197102704|ref|NP_001127270.1| probable RNA-binding protein EIF1AD [Pongo abelii]
gi|297714468|ref|XP_002833668.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Pongo abelii]
gi|75070865|sp|Q5RD29.1|EIF1A_PONAB RecName: Full=Probable RNA-binding protein EIF1AD; AltName:
Full=Eukaryotic translation initiation factor 1A
domain-containing protein
gi|55727144|emb|CAH90328.1| hypothetical protein [Pongo abelii]
Length = 166
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F S ++ N + RQ
Sbjct: 104 EAF-SEVAEKHNNNRNRQ 120
>gi|195035237|ref|XP_001989084.1| GH10238 [Drosophila grimshawi]
gi|193905084|gb|EDW03951.1| GH10238 [Drosophila grimshawi]
Length = 158
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 23/103 (22%)
Query: 10 KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSD 69
K V+ G +++V+ I++G KV ++K+L E V+ KS WPE F
Sbjct: 64 KNVWVKRGDYLLVE------PIEEGDKVKAEISKILTPEHVKEYTKSGIWPERFA----- 112
Query: 70 DANGSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQ 112
++A + S SD D+ PL N NR P+ L+
Sbjct: 113 -------KKATQAPQRTDSNSDSDE---PLSPNTNR--PVSLE 143
>gi|395852417|ref|XP_003798735.1| PREDICTED: probable RNA-binding protein EIF1AD [Otolemur garnettii]
Length = 164
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
G F++VD I++G KV ++ VL + VR+LQK WPE F N + +
Sbjct: 66 GDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWPEAFSEVAKKHNNRNRQ 119
Query: 77 RQ 78
Q
Sbjct: 120 TQ 121
>gi|311247258|ref|XP_003122556.1| PREDICTED: probable RNA-binding protein EIF1AD-like isoform 1 [Sus
scrofa]
gi|311247260|ref|XP_003122557.1| PREDICTED: probable RNA-binding protein EIF1AD-like isoform 2 [Sus
scrofa]
gi|335281495|ref|XP_003353821.1| PREDICTED: probable RNA-binding protein EIF1AD-like isoform 1 [Sus
scrofa]
gi|335281497|ref|XP_003353822.1| PREDICTED: probable RNA-binding protein EIF1AD-like isoform 2 [Sus
scrofa]
Length = 166
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 63
G F++VD I++G KV ++ VL VRALQK WP+ F
Sbjct: 66 GDFLIVD------PIEEGEKVKAEISFVLCRNHVRALQKEGLWPQAF 106
>gi|426369254|ref|XP_004051608.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 1 [Gorilla
gorilla gorilla]
gi|426369256|ref|XP_004051609.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 2 [Gorilla
gorilla gorilla]
gi|426369258|ref|XP_004051610.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 3 [Gorilla
gorilla gorilla]
gi|426369260|ref|XP_004051611.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 4 [Gorilla
gorilla gorilla]
gi|426369262|ref|XP_004051612.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 5 [Gorilla
gorilla gorilla]
Length = 166
Score = 35.8 bits (81), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGFWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F S ++ N + RQ
Sbjct: 104 EAF-SEVAEKHNNNRNRQ 120
>gi|301762510|ref|XP_002916670.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Ailuropoda
melanoleuca]
Length = 166
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 63
G F++VD I++G KV ++ VL + VR+LQK WPE F
Sbjct: 66 GDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWPEAF 106
>gi|449462828|ref|XP_004149142.1| PREDICTED: ribosome biogenesis protein TSR3 homolog [Cucumis
sativus]
Length = 265
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 84 ENDQSESDDDDGLPPLEANINRMKPMELQTESESDSE 120
E+D+ D +DGLPPLE N+N + LQ ES+ +SE
Sbjct: 232 EHDEGSDDSEDGLPPLEKNLNHLT---LQQESDEESE 265
>gi|449509094|ref|XP_004163491.1| PREDICTED: ribosome biogenesis protein TSR3 homolog [Cucumis
sativus]
Length = 265
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 3/37 (8%)
Query: 84 ENDQSESDDDDGLPPLEANINRMKPMELQTESESDSE 120
E+D+ D +DGLPPLE N+N + LQ ES+ +SE
Sbjct: 232 EHDEGSDDSEDGLPPLEKNLNHLT---LQQESDEESE 265
>gi|432880229|ref|XP_004073614.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Oryzias
latipes]
Length = 172
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G FV+VD I++G KV ++ +L+ + ++ LQK WP
Sbjct: 53 MPTKFRKNIWI---KRGDFVIVD------PIEEGEKVKAEISFILYKDHIQNLQKQQLWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EGF 106
>gi|431910247|gb|ELK13320.1| Putative RNA-binding protein EIF1AD [Pteropus alecto]
Length = 164
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EAF 106
>gi|41054860|ref|NP_956762.1| probable RNA-binding protein EIF1AD [Danio rerio]
gi|82240205|sp|Q7SY07.1|EIF1A_DANRE RecName: Full=Probable RNA-binding protein EIF1AD; AltName:
Full=Eukaryotic translation initiation factor 1A
domain-containing protein
gi|32766657|gb|AAH55173.1| Zgc:63631 [Danio rerio]
Length = 172
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G FV+VD IK+G KV ++ +L+ + ++ L+K WP
Sbjct: 53 MPTKFRKNIWI---KRGDFVIVD------PIKEGGKVKGEISFILYRDHIQHLRKLGVWP 103
Query: 61 EIFK 64
E F+
Sbjct: 104 EGFQ 107
>gi|355751947|gb|EHH56067.1| Eukaryotic translation initiation factor 1A domain-containing
protein [Macaca fascicularis]
Length = 165
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EAF 106
>gi|355685570|gb|AER97776.1| eukaryotic translation initiation factor 1A domain containing
[Mustela putorius furo]
Length = 165
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EAF 106
>gi|195657213|gb|ACG48074.1| hypothetical protein [Zea mays]
gi|195657295|gb|ACG48115.1| hypothetical protein [Zea mays]
Length = 59
Score = 35.8 bits (81), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 60 PEIFKSTNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMEL 111
P IF ST ++ + + Q + +++ SD+DD LPPLEAN N +P EL
Sbjct: 3 PAIFNSTLNEASEAGTQAQTT-VQIDEEPGSDEDDDLPPLEANTNMNRPYEL 53
>gi|159164098|pdb|2DGY|A Chain A, Solution Structure Of The Eukaryotic Initiation Factor
1a In Mgc11102 Protein
Length = 111
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 44 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWP 94
Query: 61 EIF 63
E F
Sbjct: 95 EAF 97
>gi|13477313|gb|AAH05131.1| EIF1AD protein [Homo sapiens]
gi|312152622|gb|ADQ32823.1| hypothetical protein MGC11102 [synthetic construct]
Length = 165
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EAF 106
>gi|31377656|ref|NP_115701.2| probable RNA-binding protein EIF1AD [Homo sapiens]
gi|335334939|ref|NP_001229411.1| probable RNA-binding protein EIF1AD [Homo sapiens]
gi|335334941|ref|NP_001229410.1| probable RNA-binding protein EIF1AD [Homo sapiens]
gi|335334945|ref|NP_001229412.1| probable RNA-binding protein EIF1AD [Homo sapiens]
gi|335334947|ref|NP_001229413.1| probable RNA-binding protein EIF1AD [Homo sapiens]
gi|335334949|ref|NP_001229414.1| probable RNA-binding protein EIF1AD [Homo sapiens]
gi|335334951|ref|NP_001229415.1| probable RNA-binding protein EIF1AD [Homo sapiens]
gi|402892775|ref|XP_003909584.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 1 [Papio
anubis]
gi|402892777|ref|XP_003909585.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 2 [Papio
anubis]
gi|402892779|ref|XP_003909586.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 3 [Papio
anubis]
gi|402892781|ref|XP_003909587.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 4 [Papio
anubis]
gi|74729733|sp|Q8N9N8.1|EIF1A_HUMAN RecName: Full=Probable RNA-binding protein EIF1AD; AltName:
Full=Eukaryotic translation initiation factor 1A
domain-containing protein; AltName: Full=Haponin
gi|75075245|sp|Q4R354.1|EIF1A_MACFA RecName: Full=Probable RNA-binding protein EIF1AD; AltName:
Full=Eukaryotic translation initiation factor 1A
domain-containing protein
gi|21753129|dbj|BAC04293.1| unnamed protein product [Homo sapiens]
gi|67972246|dbj|BAE02465.1| unnamed protein product [Macaca fascicularis]
gi|119594884|gb|EAW74478.1| hypothetical protein MGC11102, isoform CRA_a [Homo sapiens]
gi|119594885|gb|EAW74479.1| hypothetical protein MGC11102, isoform CRA_a [Homo sapiens]
gi|119594886|gb|EAW74480.1| hypothetical protein MGC11102, isoform CRA_a [Homo sapiens]
gi|119594887|gb|EAW74481.1| hypothetical protein MGC11102, isoform CRA_a [Homo sapiens]
gi|119594888|gb|EAW74482.1| hypothetical protein MGC11102, isoform CRA_a [Homo sapiens]
gi|189053210|dbj|BAG34832.1| unnamed protein product [Homo sapiens]
Length = 165
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EAF 106
>gi|196012084|ref|XP_002115905.1| hypothetical protein TRIADDRAFT_59800 [Trichoplax adhaerens]
gi|190581681|gb|EDV21757.1| hypothetical protein TRIADDRAFT_59800 [Trichoplax adhaerens]
Length = 160
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 22/105 (20%)
Query: 10 KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSD 69
++++ G +V+VD I++G+KV ++ VL +Q+++L++ WPE F + N
Sbjct: 59 RVIWIKRGDYVIVD------PIEEGNKVRAEISSVLNADQIKSLKEENLWPEEFVTNN-- 110
Query: 70 DANGSLERQACNHEEN--------DQSESDDDDGLPPLEANINRM 106
A+ E A HE+ +S SDDD L N NR+
Sbjct: 111 -ASMHRENSAKTHEDLDEDLDKDASESASDDD-----LFVNTNRI 149
>gi|302563379|ref|NP_001181454.1| probable RNA-binding protein EIF1AD [Macaca mulatta]
gi|109105345|ref|XP_001111740.1| PREDICTED: probable RNA-binding protein EIF1AD-like isoform 2
[Macaca mulatta]
gi|355566294|gb|EHH22673.1| Eukaryotic translation initiation factor 1A domain-containing
protein [Macaca mulatta]
gi|380787989|gb|AFE65870.1| putative RNA-binding protein EIF1AD [Macaca mulatta]
Length = 165
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EAF 106
>gi|224081192|ref|XP_002306328.1| predicted protein [Populus trichocarpa]
gi|222855777|gb|EEE93324.1| predicted protein [Populus trichocarpa]
Length = 213
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 84 ENDQSESDDDDGLPPLEANINRMKPMELQTESE 116
EN+ S +D +DGLPPLE N+N + E + ESE
Sbjct: 181 ENEGSSNDSEDGLPPLERNMNHLNFQESEDESE 213
>gi|219122250|ref|XP_002181463.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407449|gb|EEC47386.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 209
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 58/134 (43%), Gaps = 24/134 (17%)
Query: 10 KLVFNCAGSFVVV----DESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKS 65
KLV+ FV+V D G ++ D V ++T +L+ EQ++ LQ + WP
Sbjct: 75 KLVWLKRNDFVIVQTATDAEGADRK-NDSGGVRFMITHILYKEQIKHLQSNELWPGWDTE 133
Query: 66 TNSDDANGSLERQACNHEENDQS---ESDDDDGLPPLE----------------ANINRM 106
D S + + +E+ + D++D P+E N NR+
Sbjct: 134 FTQDSIESSPQNEITTNEDCSSAGVRSFDEEDQASPIEDGIVYATGYDTDDDLFVNTNRL 193
Query: 107 KPMELQTESESDSE 120
+++Q SE++S+
Sbjct: 194 ASLQVQDSSETESD 207
>gi|66802119|ref|XP_629853.1| hypothetical protein DDB_G0292138 [Dictyostelium discoideum AX4]
gi|60463232|gb|EAL61425.1| hypothetical protein DDB_G0292138 [Dictyostelium discoideum AX4]
Length = 183
Score = 35.4 bits (80), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
+P +N +++ G++ ++D KE S+V C V +L E V+ L KS +WP
Sbjct: 51 IPSKFKN---ILWIKKGNYAIID---KEDESSKSSQVKCSVVHILSKENVKGLVKSRDWP 104
Query: 61 EIFKSTNSDDANGSLERQACNHEENDQSESDDDDGLPPLEANINRMK 107
+ F + +D N + Q S+ D+D GL L N NR K
Sbjct: 105 KEF---DLEDKNQRQQPQKPLLLTAPTSD-DEDGGLSDLGVNPNRKK 147
>gi|149725596|ref|XP_001491132.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Equus
caballus]
Length = 165
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I +G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIAEGEKVKAEISFVLCKDHVRSLQKEGLWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EAF 106
>gi|281350611|gb|EFB26195.1| hypothetical protein PANDA_004772 [Ailuropoda melanoleuca]
Length = 115
Score = 35.0 bits (79), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 63
G F++VD I++G KV ++ VL + VR+LQK WPE F
Sbjct: 66 GDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGLWPEAF 106
>gi|291230514|ref|XP_002735202.1| PREDICTED: hypothetical protein [Saccoglossus kowalevskii]
Length = 205
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 50/101 (49%), Gaps = 11/101 (10%)
Query: 10 KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP-EIFKSTNS 68
K V+ G FV+VD I +G KV + +L+ Q+R +++ +WP E + +
Sbjct: 59 KNVWIKRGDFVIVD------PISEGDKVKGEIAVILYPRQIRYIKQEGKWPVEYMEKSQQ 112
Query: 69 DDA----NGSLERQACNHEENDQSESDDDDGLPPLEANINR 105
+++ ++E EE+D+ S+++D L N NR
Sbjct: 113 EESMPVSTCTVENILGGSEESDRYTSEEEDNDDDLFVNTNR 153
>gi|389751048|gb|EIM92121.1| multidrug resistance-associated ABC transporter [Stereum hirsutum
FP-91666 SS1]
Length = 1604
Score = 35.0 bits (79), Expect = 5.5, Method: Composition-based stats.
Identities = 19/87 (21%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 36 KVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLERQACNHEENDQSESDDDDG 95
++ CI+T+++F +R K++ P++ T+ D SL + A + E ++D+
Sbjct: 355 RIECIITQLVFEHSLRIRMKASISPDVEDETSQSDTASSLTKTAVDSSEGGTGPMENDE- 413
Query: 96 LPPLEANINRMKPMELQTESESDSESD 122
+ + + L +S+SD +S+
Sbjct: 414 MSHASGSSVEGEGATLLAQSQSDQDSN 440
>gi|254294018|ref|YP_003060041.1| GTP-binding proten HflX [Hirschia baltica ATCC 49814]
gi|254042549|gb|ACT59344.1| GTP-binding proten HflX [Hirschia baltica ATCC 49814]
Length = 445
Score = 35.0 bits (79), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 8/113 (7%)
Query: 12 VFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKST--NSD 69
VF F +D + ++ + G K++ I T V F + T E F++T +
Sbjct: 230 VFAADMPFATLDPTARDVELSSGKKISMIDT-VGFITDL-----PTHLIESFRATIEEAI 283
Query: 70 DANGSLERQACNHEENDQSESDDDDGLPPLEANINRMKPMELQTESESDSESD 122
+A+ L + +H E D+ SD +D L LE ++N +P ++ ++SD+ SD
Sbjct: 284 EADLLLHVRDISHPETDRQSSDVNDVLTKLEQDLNADRPPVIEVWNKSDALSD 336
>gi|145507037|ref|XP_001439479.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124406663|emb|CAK72082.1| unnamed protein product [Paramecium tetraurelia]
Length = 1321
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 8/62 (12%)
Query: 68 SDDANGSLERQACN----HEENDQSESDDDDGLPPLEANIN-RMKPMELQTESESDSESD 122
SDD SL+++ CN HEEN+Q S PPL N + + K E QTE E D+ESD
Sbjct: 1144 SDDQKSSLKKE-CNNFTIHEENEQDLSQSQ--FPPLSNNDDPKQKLNESQTEGEQDTESD 1200
Query: 123 TD 124
D
Sbjct: 1201 ND 1202
>gi|296218816|ref|XP_002755658.1| PREDICTED: probable RNA-binding protein EIF1AD [Callithrix jacchus]
Length = 166
Score = 34.7 bits (78), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 6/56 (10%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDAN 72
G F++VD I++G KV ++ VL + +R+LQK WPE F +N
Sbjct: 66 GDFLIVD------PIEEGEKVKAEISFVLCKDHMRSLQKQGLWPEAFSEVVEKHSN 115
>gi|229366340|gb|ACQ58150.1| Probable RNA-binding protein EIF1AD [Anoplopoma fimbria]
Length = 177
Score = 34.7 bits (78), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDD 70
G +V+VD I++G KV ++ +L+ + ++ LQK WPE F ++D
Sbjct: 66 GDYVIVD------PIEEGEKVKAEISFILYKDHIQYLQKQQLWPEGFTVEQAED 113
>gi|403293539|ref|XP_003937771.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 1 [Saimiri
boliviensis boliviensis]
gi|403293541|ref|XP_003937772.1| PREDICTED: probable RNA-binding protein EIF1AD isoform 2 [Saimiri
boliviensis boliviensis]
Length = 165
Score = 34.7 bits (78), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 6/47 (12%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 63
G F++VD I++G KV ++ VL + +R+LQK WPE F
Sbjct: 66 GDFLIVD------PIEEGEKVKAEISFVLCKDHMRSLQKQGLWPEAF 106
>gi|340373062|ref|XP_003385062.1| PREDICTED: probable RNA-binding protein EIF1AD-like [Amphimedon
queenslandica]
Length = 176
Score = 34.3 bits (77), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 6/47 (12%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIF 63
G FV+VD I +G+KV + +L+ Q++ L+K+ WP F
Sbjct: 66 GDFVIVD------PIAEGNKVQAEIAHILYPLQIKNLKKNGLWPSHF 106
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.307 0.125 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,897,908,929
Number of Sequences: 23463169
Number of extensions: 70528136
Number of successful extensions: 406285
Number of sequences better than 100.0: 518
Number of HSP's better than 100.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 352
Number of HSP's that attempted gapping in prelim test: 398000
Number of HSP's gapped (non-prelim): 8187
length of query: 125
length of database: 8,064,228,071
effective HSP length: 91
effective length of query: 34
effective length of database: 5,929,079,692
effective search space: 201588709528
effective search space used: 201588709528
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 69 (31.2 bits)