BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033178
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q0V9J5|EIF1A_XENTR Probable RNA-binding protein EIF1AD OS=Xenopus tropicalis GN=eif1ad
PE=2 SV=1
Length = 179
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 22/116 (18%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I +G KV + +L+ + R LQK WP
Sbjct: 53 MPTKFRKNIWI---KRGDFLIVD------PIAEGEKVKAEIAFILYKDHQRLLQKEGLWP 103
Query: 61 EIFKS------TNSDDANGSLERQACN----HEENDQSESDDDDGLPPLEANINRM 106
E F T ++ NG +A + E+ + SE+DDD GL N NR+
Sbjct: 104 EGFTQDKTGVVTKENENNGIQSTEALSTAQAKEQGEDSETDDDSGLF---VNTNRV 156
>sp|Q5HZM1|EIF1A_XENLA Probable RNA-binding protein EIF1AD OS=Xenopus laevis GN=eif1ad
PE=2 SV=1
Length = 169
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I +G KV + +L+ + R LQK WP
Sbjct: 53 MPTKFRKNIWI---KRGDFLIVD------PIVEGEKVKAEIAFILYKDHQRLLQKEGLWP 103
Query: 61 EIFKSTNSD------DANGSLERQACNHEENDQSESDDDDGL 96
E F + +++G +A + + SE+DDD GL
Sbjct: 104 EGFTQDKTGLVAKEKESSGIQSTEAQAKPQGEDSETDDDSGL 145
>sp|Q58CY2|EIF1A_BOVIN Probable RNA-binding protein EIF1AD OS=Bos taurus GN=EIF1AD PE=2
SV=1
Length = 166
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKDGHWP 103
Query: 61 EIFKSTNSDDAN 72
E F D N
Sbjct: 104 EAFSQVTEKDNN 115
>sp|Q3THJ3|EIF1A_MOUSE Probable RNA-binding protein EIF1AD OS=Mus musculus GN=Eif1ad PE=2
SV=2
Length = 170
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F N + E Q
Sbjct: 104 EAFSEVAEKQNNMNRESQ 121
>sp|Q5RKI6|EIF1A_RAT Probable RNA-binding protein EIF1AD OS=Rattus norvegicus GN=Eif1ad
PE=2 SV=1
Length = 167
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 9/78 (11%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKNHVRSLQKEGHWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F N + E Q
Sbjct: 104 EAFSEVAEKQNNVNRESQ 121
>sp|Q5RD29|EIF1A_PONAB Probable RNA-binding protein EIF1AD OS=Pongo abelii GN=EIF1AD PE=2
SV=1
Length = 166
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
Query: 61 EIFKSTNSDDANGSLERQ 78
E F S ++ N + RQ
Sbjct: 104 EAF-SEVAEKHNNNRNRQ 120
>sp|Q7SY07|EIF1A_DANRE Probable RNA-binding protein EIF1AD OS=Danio rerio GN=eif1ad PE=2
SV=1
Length = 172
Score = 35.8 bits (81), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G FV+VD IK+G KV ++ +L+ + ++ L+K WP
Sbjct: 53 MPTKFRKNIWI---KRGDFVIVD------PIKEGGKVKGEISFILYRDHIQHLRKLGVWP 103
Query: 61 EIFK 64
E F+
Sbjct: 104 EGFQ 107
>sp|Q4R354|EIF1A_MACFA Probable RNA-binding protein EIF1AD OS=Macaca fascicularis
GN=EIF1AD PE=2 SV=1
Length = 165
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EAF 106
>sp|Q8N9N8|EIF1A_HUMAN Probable RNA-binding protein EIF1AD OS=Homo sapiens GN=EIF1AD PE=1
SV=1
Length = 165
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP +I + G F++VD I++G KV ++ VL + VR+LQK WP
Sbjct: 53 MPSKYRKNIWI---KRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWP 103
Query: 61 EIF 63
E F
Sbjct: 104 EAF 106
>sp|Q6K1L7|EIF1A_CHICK Probable RNA-binding protein EIF1AD OS=Gallus gallus GN=eif1ad PE=2
SV=1
Length = 188
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 9/66 (13%)
Query: 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60
MP + V+ G F++VD I++G+KV + VL VR LQ+ WP
Sbjct: 53 MPPRFRHH---VWIKRGDFLLVD------PIEEGAKVKAEMALVLLRPHVRFLQRQGLWP 103
Query: 61 EIFKST 66
F ++
Sbjct: 104 TAFAAS 109
>sp|Q29MZ0|EIF1A_DROPS Probable RNA-binding protein EIF1AD OS=Drosophila pseudoobscura
pseudoobscura GN=GA16587 PE=3 SV=1
Length = 163
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANG 73
G F++V+ I++G KV ++K+L + V+ K+ WPE F +A
Sbjct: 73 GDFLLVE------PIEEGDKVKAEISKILTNDHVKEYTKAGIWPERFAKNPPQEAKA 123
>sp|Q8IQ13|EIF1A_DROME Probable RNA-binding protein EIF1AD OS=Drosophila melanogaster
GN=CG31957 PE=2 SV=1
Length = 159
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 17/90 (18%)
Query: 17 GSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKSTNSDDANGSLE 76
G F++V+ I++G KV + K+L E ++ K+ WP+ F ++
Sbjct: 70 GDFLLVE------PIEEGDKVKAEICKILTPEHIKEYTKAAIWPDKF-------TKKPVQ 116
Query: 77 RQACNHEENDQSESD-DDDGLPPLEANINR 105
+A + ++D SD +DD LP +NR
Sbjct: 117 EEATSQNKDD---SDFEDDLLPNTNRPVNR 143
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.125 0.348
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,573,343
Number of Sequences: 539616
Number of extensions: 1713295
Number of successful extensions: 12930
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 123
Number of HSP's that attempted gapping in prelim test: 7527
Number of HSP's gapped (non-prelim): 4442
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)