Query 033178
Match_columns 125
No_of_seqs 124 out of 171
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 17:45:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033178.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033178hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dgy_A MGC11102 protein; EIF-1 99.9 1.6E-22 5.5E-27 146.2 3.9 59 2-66 42-100 (111)
2 1d7q_A Translation initiation 99.8 6E-20 2.1E-24 137.9 5.2 58 2-66 58-115 (143)
3 1jt8_A EIF-1A, probable transl 99.8 6E-20 2E-24 131.0 -0.1 53 2-60 47-99 (102)
4 2oqk_A Putative translation in 99.7 4.1E-17 1.4E-21 118.1 4.2 57 3-66 60-116 (117)
5 1hr0_W Translation initiation 98.3 6.3E-08 2.2E-12 63.9 0.3 37 2-45 34-71 (71)
6 1ah9_A IF1, initiation factor 98.3 9.1E-08 3.1E-12 63.0 0.2 37 3-46 34-71 (71)
7 3i4o_A Translation initiation 97.8 9.3E-06 3.2E-10 55.2 2.2 36 3-45 42-78 (79)
8 2zjr_R 50S ribosomal protein L 83.6 0.69 2.4E-05 32.9 2.6 41 1-48 3-43 (115)
9 3u5e_Y L33, YL33, 60S ribosoma 77.3 2.4 8.1E-05 30.8 3.7 39 3-48 38-77 (127)
10 3j21_U 50S ribosomal protein L 76.6 1.9 6.4E-05 31.0 3.0 38 4-48 35-73 (121)
11 2fhz_B Colicin-E5; protein-pro 75.3 1.3 4.3E-05 31.5 1.7 26 11-48 65-90 (108)
12 4a17_S RPL26, 60S ribosomal pr 73.3 3.1 0.00011 30.5 3.5 39 3-48 37-76 (135)
13 4dov_A ORC1, origin recognitio 72.5 3.8 0.00013 30.9 3.9 15 11-25 36-50 (163)
14 3iz5_Y 60S ribosomal protein L 72.1 3.6 0.00012 30.7 3.7 38 4-48 38-76 (150)
15 3v2d_Y 50S ribosomal protein L 65.6 5.1 0.00018 28.2 3.2 31 11-48 4-34 (110)
16 2zkr_t 60S ribosomal protein L 56.9 5.1 0.00017 29.6 1.9 39 4-48 38-77 (145)
17 1vq8_T 50S ribosomal protein L 55.7 9 0.00031 27.4 3.0 39 3-48 31-70 (120)
18 3d3r_A Hydrogenase assembly ch 54.9 18 0.0006 25.3 4.4 27 14-54 60-86 (103)
19 2l1s_A Uncharacterized protein 54.2 6.9 0.00024 26.2 2.1 13 11-23 52-65 (83)
20 2z1c_A Hydrogenase expression/ 54.0 11 0.00039 24.6 3.1 25 15-53 37-61 (75)
21 3r8s_U 50S ribosomal protein L 53.2 12 0.00041 25.9 3.3 27 14-47 4-30 (102)
22 2ot2_A Hydrogenase isoenzymes 48.1 16 0.00055 24.7 3.2 26 14-53 42-67 (90)
23 3r8s_R 50S ribosomal protein L 43.6 24 0.00081 24.3 3.5 31 10-45 37-67 (103)
24 4ew5_A CIGR protein; inner mem 30.8 29 0.00099 24.2 2.3 14 10-23 71-85 (102)
25 2dp9_A Hypothetical protein TT 29.0 54 0.0019 22.7 3.5 44 5-63 34-80 (124)
26 2rcn_A Probable GTPase ENGC; Y 28.8 39 0.0013 27.5 3.1 35 5-48 75-112 (358)
27 1t9h_A YLOQ, probable GTPase E 28.7 37 0.0013 26.9 2.9 35 4-47 40-75 (307)
28 2je2_A Cytochrome P460; heme P 27.6 34 0.0012 25.7 2.4 52 3-62 14-66 (186)
29 2id0_A Exoribonuclease 2; RNAs 27.4 38 0.0013 29.7 3.0 35 5-47 47-81 (644)
30 2kke_A Uncharacterized protein 25.6 62 0.0021 19.7 2.9 22 35-56 10-31 (53)
31 2z0t_A Putative uncharacterize 25.3 52 0.0018 22.8 2.8 33 14-56 34-66 (109)
32 2bx2_L Ribonuclease E, RNAse E 24.8 28 0.00097 30.2 1.7 21 5-25 283-303 (517)
33 3bbo_W Ribosomal protein L24; 24.2 8.4 0.00029 29.8 -1.6 29 13-48 68-96 (191)
34 3ukw_C Bimax1 peptide; arm rep 24.2 15 0.00051 19.9 -0.1 10 4-13 19-28 (28)
35 1w4s_A Polybromo, polybromo 1 22.6 73 0.0025 22.9 3.3 45 9-53 22-76 (174)
36 2l66_A SSO7C4, transcriptional 21.2 24 0.00081 20.9 0.3 21 3-23 15-35 (53)
37 3jsy_A Acidic ribosomal protei 20.4 88 0.003 23.6 3.5 44 4-65 141-185 (213)
No 1
>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-22 Score=146.16 Aligned_cols=59 Identities=36% Similarity=0.561 Sum_probs=54.3
Q ss_pred CcchhhccceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechhHHHHHHHCCCCchhhhcC
Q 033178 2 PDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKST 66 (125)
Q Consensus 2 ~~mp~KfRK~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~dqiK~Lrk~g~WP~~F~~~ 66 (125)
..||+||||+|||++||||+|+ +++.+.+++|+|+++|+++|||+|+++|+||++|...
T Consensus 42 a~i~GK~Rk~IwI~~GD~VlVe------~~~yd~~~kg~Iv~r~~~~qvk~L~k~g~wP~~F~~~ 100 (111)
T 2dgy_A 42 VSMPSKYRKNIWIKRGDFLIVD------PIEEGEKVKAEISFVLCKDHVRSLQKEGFWPEAFSEV 100 (111)
T ss_dssp EECCTTCCSCCCCCSSCEEEEE------ECSSCSSCCEEEEEECCHHHHHHHHHHTCSCHHHHHH
T ss_pred EEechhhcccEEEcCCCEEEEE------ecccCCcceEEEEEEeCHHHHHHHHHcCCCChHHhhc
Confidence 4699999999999999999999 5555569999999999999999999999999999773
No 2
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.79 E-value=6e-20 Score=137.95 Aligned_cols=58 Identities=17% Similarity=0.068 Sum_probs=52.6
Q ss_pred CcchhhccceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechhHHHHHHHCCCCchhhhcC
Q 033178 2 PDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKST 66 (125)
Q Consensus 2 ~~mp~KfRK~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~dqiK~Lrk~g~WP~~F~~~ 66 (125)
..||+||||+|||++||||||+++ + .+.+||+|+++|+++||++|+++|+||++|..+
T Consensus 58 a~I~GKmRk~IwI~~GD~VlVe~~------~-yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~ 115 (143)
T 1d7q_A 58 CHIRGKLRKKVWINTSDIILVGLR------D-YQDNKADVILKYNADEARSLKAYGELPEHAKIN 115 (143)
T ss_dssp EECCSGGGGSCCCCTTCEEEEECS------S-SSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCC
T ss_pred EEecccceeeEEecCCCEEEEeec------c-CCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhC
Confidence 479999999999999999999944 2 347899999999999999999999999999774
No 3
>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5
Probab=99.75 E-value=6e-20 Score=131.04 Aligned_cols=53 Identities=13% Similarity=0.073 Sum_probs=48.7
Q ss_pred CcchhhccceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechhHHHHHHHCCCCc
Q 033178 2 PDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWP 60 (125)
Q Consensus 2 ~~mp~KfRK~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~dqiK~Lrk~g~WP 60 (125)
..||+||||+|||++||||+|+ +++.+..+||+|+++|+++|+++|+++|+||
T Consensus 47 a~i~GKmRk~IwI~~GD~VlVe------~~~yd~~~Kg~Iv~r~~~de~~~L~k~g~~p 99 (102)
T 1jt8_A 47 GRIPGRLKNRIWVREGDVVIVK------PWEVQGDQKCDIIWRYTKTQVEWLKRKGYLD 99 (102)
T ss_dssp EECCHHHHHHHCCCSCEEEEEC------CBCCTTSEEEEEEEESSCSHHHHHHHHHHHH
T ss_pred EEEcccceeeEEecCCCEEEEE------eccCCCCceEEEEEEeCHHHHHHHHHcCCCc
Confidence 4699999999999999999999 5554458999999999999999999999999
No 4
>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}
Probab=99.66 E-value=4.1e-17 Score=118.14 Aligned_cols=57 Identities=21% Similarity=0.149 Sum_probs=50.5
Q ss_pred cchhhccceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechhHHHHHHHCCCCchhhhcC
Q 033178 3 DMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKST 66 (125)
Q Consensus 3 ~mp~KfRK~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~dqiK~Lrk~g~WP~~F~~~ 66 (125)
.||+|||+.|||.+||+|+|+++ +. +..+|.|++||..+||++|+++|+||++|..+
T Consensus 60 ~i~GK~Rk~I~i~~GD~V~ve~~------~~-~~~kG~I~~~~~r~~~k~l~~~g~~p~~f~~~ 116 (117)
T 2oqk_A 60 HIRGKMRKKVWVNPGDIVLVSLR------DF-QDSKGDIILKYTPDEARALKSKGEIPETTKIN 116 (117)
T ss_dssp ECCHHHHHHSCCCTTCEEEEEEC------TT-CTTEEEEEEECCHHHHHHHHHTTSSCTTCCC-
T ss_pred EEcCceecCCcCCCCCEEEEEEE------cC-CCCeEEEEEEechHHHHHHHHcCCCCcccCcc
Confidence 58999999999999999999943 22 36799999999999999999999999999753
No 5
>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W
Probab=98.34 E-value=6.3e-08 Score=63.91 Aligned_cols=37 Identities=11% Similarity=-0.081 Sum_probs=29.4
Q ss_pred Ccchhhccc-eEeeeeCCEEEEecCCcccccccCCceeEEEEEEe
Q 033178 2 PDMLENDIK-LVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVL 45 (125)
Q Consensus 2 ~~mp~KfRK-~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il 45 (125)
-.+++|||| +|||.+||+|+|+.+ | .+..+|.|+++|
T Consensus 34 ~~i~Gk~Rk~~i~i~~GD~V~ve~~----~---~~~~kg~I~~r~ 71 (71)
T 1hr0_W 34 AYISGKMRMHYIRILPGDRVVVEIT----P---YDPTRGRIVYRK 71 (71)
T ss_dssp CEECHHHHHTCCCCCTTCEEEEECC----T---TCTTCCEECSCC
T ss_pred EEEcceEeccCcCCCCCCEEEEEEE----c---CCCCEEEEEEeC
Confidence 468999996 999999999999943 2 235589998764
No 6
>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5
Probab=98.30 E-value=9.1e-08 Score=62.97 Aligned_cols=37 Identities=11% Similarity=-0.139 Sum_probs=29.7
Q ss_pred cchhhccce-EeeeeCCEEEEecCCcccccccCCceeEEEEEEec
Q 033178 3 DMLENDIKL-VFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLF 46 (125)
Q Consensus 3 ~mp~KfRK~-iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~ 46 (125)
.+++|||++ |||.+||+|+|+.+ ..+..+|.|+++|.
T Consensus 34 ~i~Gk~Rk~~i~i~vGD~V~ve~~-------~~~~~kg~I~~r~~ 71 (71)
T 1ah9_A 34 HISGKMRKNYIRILTGDKVTVELT-------PYDLSKGRIVFRSR 71 (71)
T ss_dssp EECSSGGGTTCCCCTTCEECCEEC-------SSCTTEEEECSCCC
T ss_pred EEcceEeccCccCCCCCEEEEEEe-------cCCCCEEEEEEEEC
Confidence 589999976 99999999999943 22355899998763
No 7
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=97.77 E-value=9.3e-06 Score=55.22 Aligned_cols=36 Identities=11% Similarity=-0.066 Sum_probs=30.4
Q ss_pred cchhhccc-eEeeeeCCEEEEecCCcccccccCCceeEEEEEEe
Q 033178 3 DMLENDIK-LVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVL 45 (125)
Q Consensus 3 ~mp~KfRK-~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il 45 (125)
.+++|||| .|||..||.|+|+.| |. +-.+|.|++.|
T Consensus 42 ~i~GK~Rk~~I~Il~GD~V~ve~~----~y---d~~kgrIi~R~ 78 (79)
T 3i4o_A 42 HISGKMRQHYIRILPEDRVVVELS----PY---DLSRGRIVYRY 78 (79)
T ss_dssp EECHHHHHTTCCCCTTCEEEEEEE----TT---EEEEEEEEEEC
T ss_pred EeCcceecCCccCCCCCEEEEEEC----cc---CCCcEEEEEEc
Confidence 47899998 999999999999944 22 47899999986
No 8
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=83.56 E-value=0.69 Score=32.91 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=30.6
Q ss_pred CCcchhhccceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechh
Q 033178 1 MPDMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 48 (125)
Q Consensus 1 ~~~mp~KfRK~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~d 48 (125)
||++|.=.++++=|++||.|.|=. |++ ..-.|.|..|+.+.
T Consensus 3 ~p~~~~~~~rkm~IkkGD~V~Vi~-Gkd------KGk~GkV~~V~~~~ 43 (115)
T 2zjr_R 3 RPSAGSHHNDKLHFKKGDTVIVLS-GKH------KGQTGKVLLALPRD 43 (115)
T ss_dssp -CCCSTTTTSCCSSCTTSEEECCS-SSS------TTCEEEEEEEETTT
T ss_pred CCCCccccceeCcccCCCEEEEeE-cCC------CCcEEEEEEEECCC
Confidence 688888777888899999999872 222 23569999999765
No 9
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=77.27 E-value=2.4 Score=30.83 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=27.6
Q ss_pred cchhhcc-ceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechh
Q 033178 3 DMLENDI-KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 48 (125)
Q Consensus 3 ~mp~KfR-K~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~d 48 (125)
+|..|+. +.+=||.||-|+|=. |.++ ++ .|.|+.|+.+.
T Consensus 38 eLr~ky~vrs~~IkkgD~V~Vi~-GkdK-----Gk-~GkV~~V~~kk 77 (127)
T 3u5e_Y 38 ELRAQYGIKALPIRRDDEVLVVR-GSKK-----GQ-EGKISSVYRLK 77 (127)
T ss_dssp HHHHHHTCCEEECCTTCEEEECS-STTT-----TC-EEEEEEEEGGG
T ss_pred HHHHHhCcCcccccCCCEEEEee-cCCC-----Cc-cceEEEEECCC
Confidence 3455554 678999999999982 2222 34 49999999865
No 10
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=76.58 E-value=1.9 Score=31.01 Aligned_cols=38 Identities=18% Similarity=0.067 Sum_probs=26.4
Q ss_pred chhhcc-ceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechh
Q 033178 4 MLENDI-KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 48 (125)
Q Consensus 4 mp~KfR-K~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~d 48 (125)
|-.||- +.+=|++||-|+|- .|.++ +| .|.|+.|+.+.
T Consensus 35 LR~ky~~r~~~IkkGD~V~Vi-~GkdK-----Gk-~GkV~~V~~k~ 73 (121)
T 3j21_U 35 LREKYKVRNLPVRVGDKVRIM-RGDYK-----GH-EGKVVEVDLKR 73 (121)
T ss_dssp HHHHTCCSEEECCSSSEEEEC-SSSCS-----SE-EEEEEEEETTT
T ss_pred HHHHhCCcccccccCCEEEEe-ecCCC-----Cc-EeEEEEEEecC
Confidence 445553 56889999999988 23222 34 59999999764
No 11
>2fhz_B Colicin-E5; protein-protein complex, inhibition of ribonuclease, immune system, hydrolase; 1.15A {Escherichia coli} SCOP: d.243.1.2 PDB: 2a8k_A 3ao9_A 2dfx_E 2djh_A* 3vj7_A*
Probab=75.29 E-value=1.3 Score=31.50 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=21.7
Q ss_pred eEeeeeCCEEEEecCCcccccccCCceeEEEEEEechh
Q 033178 11 LVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 48 (125)
Q Consensus 11 ~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~d 48 (125)
.++.+.|.||+|. ...||||.|-.+.
T Consensus 65 t~Y~~~g~YVVvn------------drtGeivQiS~k~ 90 (108)
T 2fhz_B 65 TVYGSPGKYVVVN------------DRTGEVTQISDKT 90 (108)
T ss_dssp EEEEETTEEEEEE------------TTTCBEEEECCTT
T ss_pred eEecCCCCEEEEe------------CCCccEEEeccCC
Confidence 5889999999999 5678999987654
No 12
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=73.32 E-value=3.1 Score=30.55 Aligned_cols=39 Identities=21% Similarity=0.082 Sum_probs=27.5
Q ss_pred cchhhcc-ceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechh
Q 033178 3 DMLENDI-KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 48 (125)
Q Consensus 3 ~mp~KfR-K~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~d 48 (125)
+|..|+- +.+=||.||-|+|-. |.++ ++ .|.|+.||.+.
T Consensus 37 eLr~ky~vRs~~IkkgD~V~Vi~-GkdK-----Gk-~GkV~~V~~kk 76 (135)
T 4a17_S 37 DLRSKYNVRSMPVRKDDEVLIVR-GKFK-----GN-KGKVTQVYRKK 76 (135)
T ss_dssp HHHHHHTCSEEECCTTCEEEECS-STTT-----TC-EEEEEEEETTT
T ss_pred HHHHHhCCCcccccCCCEEEEee-cCCC-----Cc-eeeEEEEEcCC
Confidence 3455554 678899999999982 2222 34 49999999864
No 13
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=72.53 E-value=3.8 Score=30.91 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=12.3
Q ss_pred eEeeeeCCEEEEecC
Q 033178 11 LVFNCAGSFVVVDES 25 (125)
Q Consensus 11 ~iWIKrGd~VlV~~~ 25 (125)
-+=|+.||||||...
T Consensus 36 ~~~i~vGd~VLI~~~ 50 (163)
T 4dov_A 36 EIHIKVGQFVLIQGE 50 (163)
T ss_dssp EEEEETTCEEEECCS
T ss_pred CeEEeeCCEEEEeCC
Confidence 467899999999944
No 14
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=72.15 E-value=3.6 Score=30.69 Aligned_cols=38 Identities=16% Similarity=0.003 Sum_probs=26.9
Q ss_pred chhhcc-ceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechh
Q 033178 4 MLENDI-KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 48 (125)
Q Consensus 4 mp~KfR-K~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~d 48 (125)
|..||- +.+=||.||-|+|=. |.++ ++ .|.|+.|+.+.
T Consensus 38 LR~ky~vRs~~IkKGD~V~Vi~-GkdK-----Gk-~GkVl~V~~kk 76 (150)
T 3iz5_Y 38 LRHKYNVRSIPIRKDDEVQVVR-GSYK-----GR-EGKVVQVYRRR 76 (150)
T ss_dssp HHTTTTCSEEECCSSSEEEECS-STTT-----TC-EEEEEEEETTT
T ss_pred HHHHhCCcccccCCCCEEEEee-cCCC-----Cc-cceEEEEEcCC
Confidence 455553 678999999999882 2222 34 59999999864
No 15
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=65.60 E-value=5.1 Score=28.21 Aligned_cols=31 Identities=32% Similarity=0.283 Sum_probs=22.3
Q ss_pred eEeeeeCCEEEEecCCcccccccCCceeEEEEEEechh
Q 033178 11 LVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 48 (125)
Q Consensus 11 ~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~d 48 (125)
++=|++||-|+|- +|+++ +| .|.|..|+.+.
T Consensus 4 k~~IkkGD~V~Vi-~GkdK-----Gk-~GkV~~V~~~~ 34 (110)
T 3v2d_Y 4 KMHVKKGDTVLVA-SGKYK-----GR-VGKVKEVLPKK 34 (110)
T ss_dssp CCSCCTTSEEEEC-SSTTT-----TC-EEEEEEEEGGG
T ss_pred ccccCCCCEEEEe-EcCCC-----Ce-EeEEEEEECCC
Confidence 4559999999988 23222 33 49999999875
No 16
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=56.88 E-value=5.1 Score=29.59 Aligned_cols=39 Identities=15% Similarity=-0.020 Sum_probs=24.5
Q ss_pred chhhcc-ceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechh
Q 033178 4 MLENDI-KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 48 (125)
Q Consensus 4 mp~KfR-K~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~d 48 (125)
|..++. +.+=|++||-|+|-. |.++ ++.-|.|+.|+.+.
T Consensus 38 lr~ky~vr~~~IkkGD~V~Vi~-GkdK-----Gk~~GkV~~V~~k~ 77 (145)
T 2zkr_t 38 LRQKYNVRSMPIRKDDEVQVVR-GHYK-----GQQIGKVVQVYRKK 77 (145)
T ss_dssp HHHC-CC-CCBCCTTCEEEECS-STTT-----TCCSEEEEEEETTT
T ss_pred HHhhcCccccccCCCCEEEEee-cCCC-----CcceeEEEEEECCC
Confidence 444554 356799999999982 2222 34338888888664
No 17
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=55.65 E-value=9 Score=27.38 Aligned_cols=39 Identities=26% Similarity=0.084 Sum_probs=26.7
Q ss_pred cchhhc-cceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechh
Q 033178 3 DMLEND-IKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 48 (125)
Q Consensus 3 ~mp~Kf-RK~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~d 48 (125)
+|..|| -+.+=|++||.|+|-. |.+ ..-.|.|+.|+.+.
T Consensus 31 eLr~ky~vr~~~IkkGD~V~Vi~-G~d------KGk~GkV~~V~~k~ 70 (120)
T 1vq8_T 31 DLREEYGQRNVRVNAGDTVEVLR-GDF------AGEEGEVINVDLDK 70 (120)
T ss_dssp HHHHHHTCSEEECCTTCEEEECS-STT------TTCEEEEEEEETTT
T ss_pred HHHHhhccccccccCCCEEEEEe-cCC------CCCEEEEEEEECCC
Confidence 345555 2567799999999982 222 23569999998764
No 18
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=54.92 E-value=18 Score=25.27 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=18.9
Q ss_pred eeeCCEEEEecCCcccccccCCceeEEEEEEechhHHHHHH
Q 033178 14 NCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQ 54 (125)
Q Consensus 14 IKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~dqiK~Lr 54 (125)
++.||||||. .|-...++.+++.+...
T Consensus 60 ~~vGDyVLVH--------------vGfAi~kIDeeeA~etl 86 (103)
T 3d3r_A 60 LAIGDYVLIH--------------IGFVMNKIDRNDALQSL 86 (103)
T ss_dssp CCTTCEEEEE--------------EEEEEEEECHHHHHHHH
T ss_pred CCCCCEEEEe--------------echhhhhCCHHHHHHHH
Confidence 3468888887 36677888888766543
No 19
>2l1s_A Uncharacterized protein YOHN; PFAM PF11776, DUF3315, JCSG, structural genomics, PSI-biolog protein structure initiative; NMR {Klebsiella pneumoniae subsp}
Probab=54.24 E-value=6.9 Score=26.22 Aligned_cols=13 Identities=15% Similarity=0.506 Sum_probs=9.8
Q ss_pred eEeeee-CCEEEEe
Q 033178 11 LVFNCA-GSFVVVD 23 (125)
Q Consensus 11 ~iWIKr-Gd~VlV~ 23 (125)
-=|++- ||||||.
T Consensus 52 y~Wvrv~~dyvLVa 65 (83)
T 2l1s_A 52 SHWTYMGGNYVLIT 65 (83)
T ss_dssp EEEEECSSEEEEEE
T ss_pred CEEEEECCcEEEEE
Confidence 448885 4599999
No 20
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=53.98 E-value=11 Score=24.63 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=17.1
Q ss_pred eeCCEEEEecCCcccccccCCceeEEEEEEechhHHHHH
Q 033178 15 CAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRAL 53 (125)
Q Consensus 15 KrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~dqiK~L 53 (125)
+.||||||.. |-...++.+++.+..
T Consensus 37 ~vGD~VLVH~--------------GfAi~~ideeeA~et 61 (75)
T 2z1c_A 37 KPGDWVIVHT--------------GFAIEKLDEKKAMEI 61 (75)
T ss_dssp CTTCEEEEET--------------TEEEEEECHHHHHHH
T ss_pred CCCCEEEEec--------------chhhhhCCHHHHHHH
Confidence 5789999882 445667777765543
No 21
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=53.20 E-value=12 Score=25.91 Aligned_cols=27 Identities=33% Similarity=0.250 Sum_probs=19.8
Q ss_pred eeeCCEEEEecCCcccccccCCceeEEEEEEech
Q 033178 14 NCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFY 47 (125)
Q Consensus 14 IKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~ 47 (125)
|++||-|+|= +|+++ +| .|.|..|+.+
T Consensus 4 IkkGD~V~Vi-~GkdK-----Gk-~GkV~~V~~~ 30 (102)
T 3r8s_U 4 IRRDDEVIVL-TGKDK-----GK-RGKVKNVLSS 30 (102)
T ss_dssp SCSSCEEEEC-SSSST-----TC-EEEEEEEETT
T ss_pred ccCCCEEEEe-EcCCC-----Ce-eeEEEEEEeC
Confidence 7899999988 23222 23 4999999986
No 22
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=48.11 E-value=16 Score=24.73 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=18.2
Q ss_pred eeeCCEEEEecCCcccccccCCceeEEEEEEechhHHHHH
Q 033178 14 NCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRAL 53 (125)
Q Consensus 14 IKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~dqiK~L 53 (125)
++.||||||.. |-...++.+++.+..
T Consensus 42 ~~vGD~VLVH~--------------GfAi~~ideeeA~et 67 (90)
T 2ot2_A 42 PRVGQWVLVHV--------------GFAMSVINEAEARDT 67 (90)
T ss_dssp BCTTCEEEEET--------------TEEEEEECHHHHHHH
T ss_pred CCCCCEEEEec--------------ChhhhhCCHHHHHHH
Confidence 35799999992 456677888766543
No 23
>3r8s_R 50S ribosomal protein L21; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1vs8_R 1vs6_R 2aw4_R 2awb_R 1vt2_R 2i2v_R 2j28_R 2i2t_R* 2qao_R* 2qba_R* 2qbc_R* 2qbe_R 2qbg_R 2qbi_R* 2qbk_R* 2qov_R 2qox_R 2qoz_R* 2qp1_R* 2rdo_R ...
Probab=43.60 E-value=24 Score=24.35 Aligned_cols=31 Identities=16% Similarity=0.180 Sum_probs=17.5
Q ss_pred ceEeeeeCCEEEEecCCcccccccCCceeEEEEEEe
Q 033178 10 KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVL 45 (125)
Q Consensus 10 K~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il 45 (125)
+-+.|.-|++++|. +|+-+|.+|+|+|+.-.
T Consensus 37 ~VLlv~~~~~~~iG-----~P~v~~a~V~a~V~~~~ 67 (103)
T 3r8s_R 37 EVLMIANGEEVKIG-----VPFVDGGVIKAEVVAHG 67 (103)
T ss_dssp CEEEEESSSEEECS-----SSSCTTCEEEEEEEEEE
T ss_pred EEEEEecCCCEEEC-----CcccCCcEEEEEEEecc
Confidence 33444444444444 25556778888887654
No 24
>4ew5_A CIGR protein; inner membrane protein, structural genomics, APC101781, PSI- midwest center for structural genomics, MCSG; 1.87A {Salmonella enterica subsp}
Probab=30.79 E-value=29 Score=24.21 Aligned_cols=14 Identities=14% Similarity=0.418 Sum_probs=10.8
Q ss_pred ceEeeeeCC-EEEEe
Q 033178 10 KLVFNCAGS-FVVVD 23 (125)
Q Consensus 10 K~iWIKrGd-~VlV~ 23 (125)
--=|++.|+ ||||.
T Consensus 71 Gy~Wvrvg~D~VLVA 85 (102)
T 4ew5_A 71 GYEWKIVGDNLVLIA 85 (102)
T ss_dssp TEEEEEETTEEEEEE
T ss_pred CeEEEEECCCEEEEE
Confidence 445998865 99998
No 25
>2dp9_A Hypothetical protein TTHA0113; jellyroll, structural genomics, NPPSFA, national project on structural and functional analyses; 1.90A {Thermus thermophilus} SCOP: b.122.1.5 PDB: 1wk2_A
Probab=28.95 E-value=54 Score=22.68 Aligned_cols=44 Identities=16% Similarity=-0.006 Sum_probs=23.9
Q ss_pred hhhccceEeeeeCCEEEEecCCcccccccCCceeEEEEEEe---chhHHHHHHHCCCCchhh
Q 033178 5 LENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVL---FYEQVRALQKSTEWPEIF 63 (125)
Q Consensus 5 p~KfRK~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il---~~dqiK~Lrk~g~WP~~F 63 (125)
++++|..|||-....||- .++|+.++ +++++..+.+...-|..|
T Consensus 34 ~t~~rg~v~IhatG~ivG---------------~~~i~d~~g~~~~eel~~~~~~~~~~~~~ 80 (124)
T 2dp9_A 34 KTRHRGPLGIVSGGRLIG---------------QADLVGVEGPFSVEELLAHQEKHLAEEAF 80 (124)
T ss_dssp CCCCCEEEEEEETTEEEE---------------EEEEEEEEEEECHHHHGGGHHHHCCCHHH
T ss_pred CCCCCCEEEEEECCCEEE---------------EEEEEEEecCCCHHHHHHHhhhcCCCHHH
Confidence 345555566655544441 24666676 777665544444455544
No 26
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=28.78 E-value=39 Score=27.52 Aligned_cols=35 Identities=23% Similarity=0.008 Sum_probs=21.8
Q ss_pred hhhccceEeeeeCCEEEEecCCcccccccC---CceeEEEEEEechh
Q 033178 5 LENDIKLVFNCAGSFVVVDESGKEKAIKDG---SKVACIVTKVLFYE 48 (125)
Q Consensus 5 p~KfRK~iWIKrGd~VlV~~~g~~~p~~e~---~KVkgeIv~il~~d 48 (125)
.++||+ +-.||+|++. +...+ .-++|.|+.||-..
T Consensus 75 r~~~~~---~~vGD~V~~~------~~~~~~~~~~~~~~I~~i~~R~ 112 (358)
T 2rcn_A 75 RRTIRS---LVTGDRVVWR------PGKAAAEGVNVKGIVEAVHERT 112 (358)
T ss_dssp CTTCCC---CCBTCEEEEE------CBC-------CCEEEEEECCCS
T ss_pred cCCCCC---CCCCcEEEEE------eCCCccccccccceEeEEeCCc
Confidence 456665 6689999998 32222 12358888888765
No 27
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=28.70 E-value=37 Score=26.93 Aligned_cols=35 Identities=17% Similarity=0.010 Sum_probs=22.2
Q ss_pred chhhccc-eEeeeeCCEEEEecCCcccccccCCceeEEEEEEech
Q 033178 4 MLENDIK-LVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFY 47 (125)
Q Consensus 4 mp~KfRK-~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~ 47 (125)
+.++||+ .+=+-.||+|+++ +... -.|.|+.|+-.
T Consensus 40 ~rg~~~~~~~~~~vGD~V~~~------~~~~---~~~~i~~i~~R 75 (307)
T 1t9h_A 40 GRGIFRKNKITPLVGDYVVYQ------AEND---KEGYLMEIKER 75 (307)
T ss_dssp SCSSCCSCCCCCCBTCEEEEE------CCTT---SCEEEEEECCC
T ss_pred EcccccccCCCCCCCeEEEEE------EcCC---CceEEEEEcch
Confidence 4567774 2334589999998 2221 25777777754
No 28
>2je2_A Cytochrome P460; heme P460, cross-linked heme, metal binding protein; HET: HEC; 1.8A {Nitrosomonas europaea} PDB: 2je3_A*
Probab=27.59 E-value=34 Score=25.74 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=30.6
Q ss_pred cchhhccceEeeeeCCEEEEecCCcccccccCCceeEEEEEEech-hHHHHHHHCCCCchh
Q 033178 3 DMLENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFY-EQVRALQKSTEWPEI 62 (125)
Q Consensus 3 ~mp~KfRK~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~-dqiK~Lrk~g~WP~~ 62 (125)
.+|.-||. |+.-+..+.-. ++..|.---++|.+||.. .-++++++.+-||..
T Consensus 14 ~~P~gYr~--W~~v~s~~~~~------~~~~g~a~~~~~~~IY~N~~A~~a~k~~~~fPdG 66 (186)
T 2je2_A 14 LLPKNYRE--WVMVGTQVTPN------ELNDGKAPFTEIRTVYVDPESYAHWKKTGEFRDG 66 (186)
T ss_dssp ECCSSGGG--SEEEEEEEEC----------------CEEEEEEECHHHHHHHHHHSSCCTT
T ss_pred cCCCCcCc--eEEeccccccc------ccccCccCCCceeEEEECHHHHHHHHccCCCCCC
Confidence 46888883 88777754422 121121123578888865 456778888999985
No 29
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=27.36 E-value=38 Score=29.65 Aligned_cols=35 Identities=9% Similarity=0.067 Sum_probs=23.1
Q ss_pred hhhccceEeeeeCCEEEEecCCcccccccCCceeEEEEEEech
Q 033178 5 LENDIKLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFY 47 (125)
Q Consensus 5 p~KfRK~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~ 47 (125)
|++.-+++| -||.|+|. ....+++-.|+|+.||..
T Consensus 47 ~~~~~~~a~--~GD~V~v~------i~~~~~~~eg~v~~iler 81 (644)
T 2id0_A 47 PPPQMKKVM--HGDRIIAV------IHSEKERESAEPEELVEP 81 (644)
T ss_dssp CHHHHTTSC--TTCEEEEE------EECCSSSCEEEEEEEEEC
T ss_pred CHHHHhcCC--CCCEEEEE------EecCCCCeEEEEEEEEec
Confidence 444445555 59999999 344455677888777765
No 30
>2kke_A Uncharacterized protein; protein northeast structural genomics consortium (NESG), target TR5, PSI-2; NMR {Methanothermobacter thermautotrophicusstr}
Probab=25.61 E-value=62 Score=19.71 Aligned_cols=22 Identities=23% Similarity=0.226 Sum_probs=17.3
Q ss_pred CceeEEEEEEechhHHHHHHHC
Q 033178 35 SKVACIVTKVLFYEQVRALQKS 56 (125)
Q Consensus 35 ~KVkgeIv~il~~dqiK~Lrk~ 56 (125)
-|-.--+|-.||+++|.+|+..
T Consensus 10 lkdtkpvvvrlypdeiealksr 31 (53)
T 2kke_A 10 LKDTKPVVVRLYPDEIEALKSR 31 (53)
T ss_dssp TTSSEEEEEEECHHHHHHHHTT
T ss_pred cccCCceEEEeChhHHHHHHhc
Confidence 3555667888999999999864
No 31
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=25.25 E-value=52 Score=22.83 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=26.4
Q ss_pred eeeCCEEEEecCCcccccccCCceeEEEEEEechhHHHHHHHC
Q 033178 14 NCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKS 56 (125)
Q Consensus 14 IKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~dqiK~Lrk~ 56 (125)
|+.||.++.. +..+..+|+.|-.-++-+.|-+.
T Consensus 34 ikvGD~I~f~----------~~~l~~~V~~v~~Y~sF~~ll~~ 66 (109)
T 2z0t_A 34 IKPGDIIIFE----------GGKLKVKVKGIRVYSSFKEMLEK 66 (109)
T ss_dssp CCTTCEEEEG----------GGTEEEEEEEEEEESCHHHHHHH
T ss_pred CCCCCEEEEC----------CCEEEEEEEEEEccCCHHHHHHh
Confidence 6899999974 45899999999888877776654
No 32
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=24.80 E-value=28 Score=30.19 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=17.9
Q ss_pred hhhccceEeeeeCCEEEEecC
Q 033178 5 LENDIKLVFNCAGSFVVVDES 25 (125)
Q Consensus 5 p~KfRK~iWIKrGd~VlV~~~ 25 (125)
-.-|.++||++-|.|++++++
T Consensus 283 ~~al~~~V~L~sGGylvIe~T 303 (517)
T 2bx2_L 283 ESAFQREVRLPSGGSIVIDST 303 (517)
T ss_dssp HHTTCSEEECTTSCEEEEEEC
T ss_pred HHHhCCeEEcCCCeEEEEecC
Confidence 345789999999999999954
No 33
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=24.25 E-value=8.4 Score=29.76 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=19.7
Q ss_pred eeeeCCEEEEecCCcccccccCCceeEEEEEEechh
Q 033178 13 FNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYE 48 (125)
Q Consensus 13 WIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~d 48 (125)
-||+||-|+|=. |++| .-.|.|..|+.+.
T Consensus 68 kIkKGD~V~VIa-GkDK------GK~GkVl~V~~k~ 96 (191)
T 3bbo_W 68 HVKVGDTVKVIS-GGEK------GKIGEISKIHKHN 96 (191)
T ss_dssp CSCCSSCEEECS-SSST------TCCCSCCCCCSSS
T ss_pred eeecCCEEEEee-cCCC------CceEEEEEEECCC
Confidence 499999999872 3222 2447888887654
No 34
>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}
Probab=24.18 E-value=15 Score=19.93 Aligned_cols=10 Identities=10% Similarity=0.003 Sum_probs=8.3
Q ss_pred chhhccceEe
Q 033178 4 MLENDIKLVF 13 (125)
Q Consensus 4 mp~KfRK~iW 13 (125)
-|++-||++|
T Consensus 19 epprkrkrlw 28 (28)
T 3ukw_C 19 EPPRKRKRLW 28 (28)
T ss_dssp SCCSSCCCCC
T ss_pred CcchhhhccC
Confidence 4788899988
No 35
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=22.59 E-value=73 Score=22.93 Aligned_cols=45 Identities=11% Similarity=0.016 Sum_probs=26.3
Q ss_pred cceEeeeeCCEEEEecCCc-ccc--------cc-cCCceeEEEEEEechhHHHHH
Q 033178 9 IKLVFNCAGSFVVVDESGK-EKA--------IK-DGSKVACIVTKVLFYEQVRAL 53 (125)
Q Consensus 9 RK~iWIKrGd~VlV~~~g~-~~p--------~~-e~~KVkgeIv~il~~dqiK~L 53 (125)
++.+.++.||+|+|.+.+. .+| +. ..+.....+.+-|+++++.+.
T Consensus 22 ~~g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~~~~~g~~~v~v~WfyRPeet~~~ 76 (174)
T 1w4s_A 22 FKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFYRPNETFHL 76 (174)
T ss_dssp ----CCCTTCEEEECCSSTTSCCEEEEEEEEEECTTCCEEEEEEEEECGGGSCCC
T ss_pred ECCEEEECCCEEEEeCCCCCCCCEEEEEEEEEEcCCCCEEEEEEEecCHHHcccc
Confidence 4556899999999995431 111 11 123456777777888876553
No 36
>2l66_A SSO7C4, transcriptional regulator, ABRB family; DNA binding protein, transcription regulator; NMR {Sulfolobus solfataricus}
Probab=21.23 E-value=24 Score=20.92 Aligned_cols=21 Identities=14% Similarity=0.022 Sum_probs=19.1
Q ss_pred cchhhccceEeeeeCCEEEEe
Q 033178 3 DMLENDIKLVFNCAGSFVVVD 23 (125)
Q Consensus 3 ~mp~KfRK~iWIKrGd~VlV~ 23 (125)
-+|..+|+.+=|+.||.|.+.
T Consensus 15 ~IPk~ir~~lgi~~Gd~v~i~ 35 (53)
T 2l66_A 15 TIPAKVRQKFQIKEGDLVKVT 35 (53)
T ss_dssp CCCHHHHHHSCCCTTCEEEEE
T ss_pred EeCHHHHHHcCcCCCCEEEEE
Confidence 379999999999999999888
No 37
>3jsy_A Acidic ribosomal protein P0 homolog; ribonucleoprotein; 1.60A {Methanocaldococcus jannaschii}
Probab=20.35 E-value=88 Score=23.61 Aligned_cols=44 Identities=16% Similarity=-0.003 Sum_probs=33.3
Q ss_pred chhhcc-ceEeeeeCCEEEEecCCcccccccCCceeEEEEEEechhHHHHHHHCCCCchhhhc
Q 033178 4 MLENDI-KLVFNCAGSFVVVDESGKEKAIKDGSKVACIVTKVLFYEQVRALQKSTEWPEIFKS 65 (125)
Q Consensus 4 mp~KfR-K~iWIKrGd~VlV~~~g~~~p~~e~~KVkgeIv~il~~dqiK~Lrk~g~WP~~F~~ 65 (125)
||+|.. -+||| ..||+||.+ |. +++++|.+-|+.-|.=|..|.-
T Consensus 141 iptki~~G~I~i-~~d~~v~k~---------G~--------~v~~~~A~lL~~l~i~p~~~~l 185 (213)
T 3jsy_A 141 IPAAIEKGKIAI-KEDKVVVKK---------GE--------VVSPKLAAVLDRLGIKPIKVGL 185 (213)
T ss_dssp CCEEEETTEEEE-CSCEEEECT---------TS--------BCCHHHHHHHHHTTCCCEEESC
T ss_pred CceEeecCeEEE-ccceEEEec---------CC--------CcCHHHHHHHHHcCCCcEEEEE
Confidence 566665 46777 678888882 33 3678999999999999998854
Done!