BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033180
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54T60|TMM50_DICDI Transmembrane protein 50 homolog OS=Dictyostelium discoideum
GN=tmem50 PE=3 SV=1
Length = 156
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 15/123 (12%)
Query: 12 PGVAGAVFGAGWWFWIDAVVCSSVK----------VSFVHYLPGIFASLAALMFNCVRKE 61
P +AG +F AGW+ WID V + + +++YLPGIFA+L +M N V
Sbjct: 10 PALAGIIFTAGWFLWIDGHVYENTNNKNADFDGPHIQWIYYLPGIFATLGMVMANIVDLS 69
Query: 62 DIDYSP--YEEGEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPS---AWTGTAGV 116
++ + ++ G ++++WLF+++ +SF + A++ +++ L + W G A
Sbjct: 70 ALNSNSLLFDGGATKVRVWLFISFAISFGCIGAALWIMVAVFLPPHNTNDAAQWPGIAIT 129
Query: 117 LQC 119
LQ
Sbjct: 130 LQT 132
>sp|Q9CXL1|TM50A_MOUSE Transmembrane protein 50A OS=Mus musculus GN=Tmem50a PE=2 SV=1
Length = 157
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 1 MDLAELWAIFGPGVAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCV 58
MD E AG +F GWW IDA V F H + G+ A++A LM N V
Sbjct: 14 MDWGEKRNTIASIAAGVLFFTGWWIIIDAAVMYPRMDQFNHSYHTCGVIATIAFLMINAV 73
Query: 59 RKEDIDYSPYEEG---EWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAG 115
+ Y EG + ++WLF+ ++++F SL AS+ +L + K + G A
Sbjct: 74 SNGQVRGDSYSEGCLGQTGARIWLFIGFMLAFGSLIASMWILFGGYVAKEKDVVYPGIAV 133
Query: 116 VLQCVFVL 123
Q F+
Sbjct: 134 FFQNAFIF 141
>sp|O95807|TM50A_HUMAN Transmembrane protein 50A OS=Homo sapiens GN=TMEM50A PE=2 SV=1
Length = 157
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 15 AGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEEG- 71
AG +F GWW IDA V F H + G+ A++A LM N V + Y EG
Sbjct: 28 AGVLFFTGWWIIIDAAVIYPTMKDFNHSYHACGVIATIAFLMINAVSNGQVRGDSYSEGC 87
Query: 72 --EWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVL 123
+ ++WLF+ ++++F SL AS+ +L + K + G A Q F+
Sbjct: 88 LGQTGARIWLFVGFMLAFGSLIASMWILFGGYVAKEKDIVYPGIAVFFQNAFIF 141
>sp|Q5R4C3|TM50B_PONAB Transmembrane protein 50B OS=Pongo abelii GN=TMEM50B PE=2 SV=1
Length = 158
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 14 VAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEE- 70
VAG +F GWW IDA V H + G+F++LA M N V + YE
Sbjct: 29 VAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYESG 88
Query: 71 --GEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVL 123
G ++WLF+ +++ F SL AS+ +L + V + G A Q +
Sbjct: 89 CLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAVFFQNALIF 142
>sp|A9CAZ8|TM50B_PAPAN Transmembrane protein 50B OS=Papio anubis GN=TMEM50B PE=4 SV=1
Length = 158
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 14 VAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEE- 70
VAG +F GWW IDA V H + G+F++LA M N V + YE
Sbjct: 29 VAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYESG 88
Query: 71 --GEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVL 123
G ++WLF+ +++ F SL AS+ +L + V + G A Q +
Sbjct: 89 CLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAVFFQNALIF 142
>sp|P56557|TM50B_HUMAN Transmembrane protein 50B OS=Homo sapiens GN=TMEM50B PE=1 SV=2
Length = 158
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 14 VAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEE- 70
VAG +F GWW IDA V H + G+F++LA M N V + YE
Sbjct: 29 VAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYESG 88
Query: 71 --GEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVL 123
G ++WLF+ +++ F SL AS+ +L + V + G A Q +
Sbjct: 89 CLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAVFFQNALIF 142
>sp|Q3SZL9|TM50B_BOVIN Transmembrane protein 50B OS=Bos taurus GN=TMEM50B PE=2 SV=1
Length = 158
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 6/115 (5%)
Query: 14 VAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEE- 70
VAG +F GWW IDA V H + G+F++LA M N V + YE
Sbjct: 29 VAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYESG 88
Query: 71 --GEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVKTGPSAWTGTAGVLQCVFVL 123
G ++WLF+ +++ F SL AS+ +L + V + G A Q +
Sbjct: 89 CLGRTGARVWLFIGFMLMFGSLIASMWILF-GAYVTQNTDVYPGLAVFFQNALIF 142
>sp|Q9D1X9|TM50B_MOUSE Transmembrane protein 50B OS=Mus musculus GN=Tmem50b PE=2 SV=1
Length = 158
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 14 VAGAVFGAGWWFWIDAVVCSSVKVSFVH--YLPGIFASLAALMFNCVRKEDIDYSPYEE- 70
VAG +F GWW IDA V H + G+F++LA M N V + YE
Sbjct: 29 VAGILFFTGWWIMIDAAVVYPKPEQLNHAFHTCGVFSTLAFFMINAVSNAQVRGDSYESG 88
Query: 71 --GEWRLKLWLFLAYVVSFVSLAASVGLL 97
G ++WLF+ +++ F SL AS+ +L
Sbjct: 89 CLGRTGARVWLFIGFMLMFGSLIASMWIL 117
>sp|Q12016|VPS68_YEAST Vacuolar protein sorting-associated protein 68 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS68 PE=1
SV=1
Length = 184
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 24/135 (17%)
Query: 14 VAGAVFGAGWWFWIDAVV------CSSVKVSFVHYLPGIFASLAALMFNCVRKEDI---- 63
++GA++ G+W ++DAV+ S V V+F+ ++P + ++L L+ N + K +
Sbjct: 29 LSGALYALGFWIFLDAVLYSRYSNASDVHVTFIDWIPFLCSTLGTLIVNSIEKNRLLQGA 88
Query: 64 ---DYSPYEEG--------EWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVK---TGPSA 109
D + G W+ + LF + + L+ S+ +LI LVK T P+
Sbjct: 89 LSSDGGAFGSGVGDLDSSMAWQARTVLFFGFALLAGGLSGSIVVLIIKFLVKDYNTYPTL 148
Query: 110 WTGTAGVLQCVFVLI 124
G VL V +L+
Sbjct: 149 GMGVNNVLGNVCILL 163
>sp|Q8ZM23|UXAC_SALTY Uronate isomerase OS=Salmonella typhimurium (strain LT2 / SGSC1412
/ ATCC 700720) GN=uxaC PE=1 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|B4TVB3|UXAC_SALSV Uronate isomerase OS=Salmonella schwarzengrund (strain CVM19633)
GN=uxaC PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|C0PYB6|UXAC_SALPC Uronate isomerase OS=Salmonella paratyphi C (strain RKS4594)
GN=uxaC PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|A9N4U7|UXAC_SALPB Uronate isomerase OS=Salmonella paratyphi B (strain ATCC BAA-1250 /
SPB7) GN=uxaC PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|B5RE96|UXAC_SALG2 Uronate isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC
13346) GN=uxaC PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|B5QYB2|UXAC_SALEP Uronate isomerase OS=Salmonella enteritidis PT4 (strain P125109)
GN=uxaC PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|B5FV01|UXAC_SALDC Uronate isomerase OS=Salmonella dublin (strain CT_02021853) GN=uxaC
PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|Q57JX8|UXAC_SALCH Uronate isomerase OS=Salmonella choleraesuis (strain SC-B67)
GN=uxaC PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|B5F623|UXAC_SALA4 Uronate isomerase OS=Salmonella agona (strain SL483) GN=uxaC PE=3
SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|Q8Z3R7|UXAC_SALTI Uronate isomerase OS=Salmonella typhi GN=uxaC PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|B5BFV0|UXAC_SALPK Uronate isomerase OS=Salmonella paratyphi A (strain AKU_12601)
GN=uxaC PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|Q5PMP8|UXAC_SALPA Uronate isomerase OS=Salmonella paratyphi A (strain ATCC 9150 /
SARB42) GN=uxaC PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|B4T5P8|UXAC_SALNS Uronate isomerase OS=Salmonella newport (strain SL254) GN=uxaC PE=3
SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|A9MQL9|UXAC_SALAR Uronate isomerase OS=Salmonella arizonae (strain ATCC BAA-731 /
CDC346-86 / RSK2980) GN=uxaC PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.72, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|B4THM8|UXAC_SALHS Uronate isomerase OS=Salmonella heidelberg (strain SL476) GN=uxaC
PE=3 SV=1
Length = 470
Score = 32.7 bits (73), Expect = 0.75, Method: Composition-based stats.
Identities = 12/16 (75%), Positives = 14/16 (87%), Gaps = 1/16 (6%)
Query: 11 GPGVAGAV-FGAGWWF 25
GPG+AG V FG+GWWF
Sbjct: 370 GPGIAGKVQFGSGWWF 385
>sp|O05435|MVIN_MYCTU Probable peptidoglycan biosynthesis protein MviN OS=Mycobacterium
tuberculosis GN=mviN PE=1 SV=2
Length = 1184
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 45 GIFASLAALMFNCVRKEDIDYSPYEEGEWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVK 104
G+FA A L+ +R+E I P + RLK + +A + L + +GL++ + +
Sbjct: 223 GVFAQTAVLLV-AIRREHISLRPLWGIDQRLKRFGAMAAAMVLYVLISQLGLVVGNRIAS 281
Query: 105 T----GPSAWTGTAGVLQCVFVLI 124
T GP+ + T VL F +I
Sbjct: 282 TAAASGPAIYNYTWLVLMLPFGMI 305
>sp|Q114N4|COXX_TRIEI Protoheme IX farnesyltransferase OS=Trichodesmium erythraeum
(strain IMS101) GN=ctaB PE=3 SV=1
Length = 328
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 25 FWIDAVVCSSVKVSFVHYLPGIFASLAALMFNCVRKEDIDYSPYEEGEWR 74
W+ A S+ + FV G AS AA NC+ DIDY E WR
Sbjct: 43 MWLGAKGEVSLFLLFVTLTGGALASGAANAINCIYDSDIDYI-MERTRWR 91
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.328 0.141 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,203,437
Number of Sequences: 539616
Number of extensions: 1578312
Number of successful extensions: 5161
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 5125
Number of HSP's gapped (non-prelim): 62
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)