Query 033180
Match_columns 125
No_of_seqs 104 out of 186
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 10:47:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033180.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033180hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05255 UPF0220: Uncharacteri 100.0 5.6E-50 1.2E-54 306.0 10.8 124 2-125 16-151 (166)
2 KOG3393 Predicted membrane pro 100.0 1.9E-47 4E-52 287.3 7.9 122 2-125 15-142 (157)
3 PF11119 DUF2633: Protein of u 56.9 16 0.00035 23.9 3.1 18 74-91 9-26 (59)
4 PRK10714 undecaprenyl phosphat 39.4 48 0.0011 27.2 4.1 29 75-103 231-259 (325)
5 PF04657 DUF606: Protein of un 33.3 1.2E+02 0.0026 22.1 5.0 53 5-57 30-83 (138)
6 PHA00276 phage lambda Rz-like 30.3 46 0.00099 25.4 2.3 26 4-29 2-27 (144)
7 PRK13499 rhamnose-proton sympo 24.1 4.1E+02 0.0089 22.7 7.2 75 6-90 257-336 (345)
8 PF02038 ATP1G1_PLM_MAT8: ATP1 19.6 1.6E+02 0.0034 18.7 2.9 23 4-27 12-34 (50)
9 PF12955 DUF3844: Domain of un 18.4 1.5E+02 0.0033 21.2 3.0 26 74-99 65-91 (103)
10 PF08449 UAA: UAA transporter 17.1 2.6E+02 0.0057 22.3 4.5 31 33-63 112-142 (303)
No 1
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=100.00 E-value=5.6e-50 Score=305.97 Aligned_cols=124 Identities=43% Similarity=0.824 Sum_probs=116.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc------ccccchhhhHHHHHHHHHHHhcccCCccccCCCC----ch
Q 033180 2 DLAELWAIFGPGVAGAVFGAGWWFWIDAVVCSSV------KVSFVHYLPGIFASLAALMFNCVRKEDIDYSPYE----EG 71 (125)
Q Consensus 2 ~~~~~~~~~~~~~AGaLF~~gwWi~iDa~v~~~~------~~~f~~~ipgi~stlgm~mvN~V~~~~l~~~~~~----~~ 71 (125)
|.++.||++++|+||+||++|||++|||++++++ |++|+||+||||||+||+|+|+|||+||++|+++ .+
T Consensus 16 ~~~~~~~~~~~~~AGaLF~~gwWi~iDa~v~s~~~~~~~~~~~f~~~ipgI~stlgm~mvN~V~~~~l~~~~~~~~~~~~ 95 (166)
T PF05255_consen 16 DWSEKRNAIGSYVAGALFALGWWIFIDAAVYSKHANGSDVHVTFVDWIPGIFSTLGMFMVNSVSKSRLRGDSYSESGCGG 95 (166)
T ss_pred CchHhHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCCCCccccceeeehHHHHHHHHHHhccccHHHhcCCCCCCCCCch
Confidence 5788999999999999999999999999999865 8999999999999999999999999999977653 36
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccc--CCCcccchHHHHHhhhhhhcC
Q 033180 72 EWRLKLWLFLAYVVSFVSLAASVGLLIQDSLVK--TGPSAWTGTAGVLQCVFVLIR 125 (125)
Q Consensus 72 ~~~aR~~LFigf~l~fggl~~s~~ili~~yv~~--~~~~~~~Gva~vlqn~lI~~s 125 (125)
.||||+|||+||+++|||++||+|||+.||++| ++++.|||||+|+||++||+|
T Consensus 96 ~~~aR~~LFigf~l~fggl~~s~~vli~~yv~~~~~~~~~~~Gva~vlqN~lI~~S 151 (166)
T PF05255_consen 96 AWRARLWLFIGFALSFGGLAGSVWVLILKYVVPQYTKPTLWPGVANVLQNALIFLS 151 (166)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCCCcccccHHHHHHHHHHHH
Confidence 799999999999999999999999999999998 578999999999999999986
No 2
>KOG3393 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=1.9e-47 Score=287.33 Aligned_cols=122 Identities=36% Similarity=0.677 Sum_probs=111.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC--cccccchhhhHHHHHHHHHHHhcccCCccccCCCCc---hhHHHH
Q 033180 2 DLAELWAIFGPGVAGAVFGAGWWFWIDAVVCSS--VKVSFVHYLPGIFASLAALMFNCVRKEDIDYSPYEE---GEWRLK 76 (125)
Q Consensus 2 ~~~~~~~~~~~~~AGaLF~~gwWi~iDa~v~~~--~~~~f~~~ipgi~stlgm~mvN~V~~~~l~~~~~~~---~~~~aR 76 (125)
|.++.||.+. +||+||++|||++|||+++++ +|+||+||+|++|||++++|||+|||+|+++|+|++ ++++||
T Consensus 15 ~~~~rrn~v~--~aG~LFf~GwWi~iDAa~~~~~~~~~t~~~~i~~v~stl~~~mVNaI~~~~vsgds~a~g~sga~~AR 92 (157)
T KOG3393|consen 15 DWGERRNAVA--VAGALFFTGWWIMIDAALISPKSEQITFVYWIIGVFSTLAFLMVNAISNSQVSGDSYAEGCSGARGAR 92 (157)
T ss_pred cccccccchH--HHHHHHHHHHHHhhhhhhccCcccceeeeeehhHHHHHHHHHhheccccceecCCcccccccccchhh
Confidence 4556666554 999999999999999999975 699999999999999999999999999999999865 569999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccCCCc-ccchHHHHHhhhhhhcC
Q 033180 77 LWLFLAYVVSFVSLAASVGLLIQDSLVKTGPS-AWTGTAGVLQCVFVLIR 125 (125)
Q Consensus 77 ~~LFigf~l~fggl~~s~~ili~~yv~~~~~~-~~~Gva~vlqn~lI~~s 125 (125)
+|||+||+|+||||+||+||||.||++++++. +|||+|+++||++||+|
T Consensus 93 ~wLfiGF~l~fgsLias~wVli~~yv~~~~~~~v~~GvA~~~~N~~i~~s 142 (157)
T KOG3393|consen 93 IWLFIGFALLFGSLIASIWVLIGKYVVKEYDGKVWPGVANFLQNVLIFFS 142 (157)
T ss_pred hHHHHHHHHHHhhhhhhHHHHhHHHHhcCCCCcccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999987665 79999999999999986
No 3
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=56.92 E-value=16 Score=23.87 Aligned_cols=18 Identities=17% Similarity=0.477 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033180 74 RLKLWLFLAYVVSFVSLA 91 (125)
Q Consensus 74 ~aR~~LFigf~l~fggl~ 91 (125)
=+|++|.|+|...||=++
T Consensus 9 mtriVLLISfiIlfgRl~ 26 (59)
T PF11119_consen 9 MTRIVLLISFIILFGRLI 26 (59)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 389999999999999554
No 4
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=39.41 E-value=48 Score=27.17 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 033180 75 LKLWLFLAYVVSFVSLAASVGLLIQDSLV 103 (125)
Q Consensus 75 aR~~LFigf~l~fggl~~s~~ili~~yv~ 103 (125)
-|++..+|+.+++.|++.+.++++.++..
T Consensus 231 lr~~~~~g~~~~~~~~~~~~~~~~~~~~~ 259 (325)
T PRK10714 231 LRLLSLLGSIIAIGGFSLAVLLVVLRLTF 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 48899999999999999899988877753
No 5
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=33.27 E-value=1.2e+02 Score=22.08 Aligned_cols=53 Identities=17% Similarity=0.041 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcc-CcccccchhhhHHHHHHHHHHHhc
Q 033180 5 ELWAIFGPGVAGAVFGAGWWFWIDAVVCS-SVKVSFVHYLPGIFASLAALMFNC 57 (125)
Q Consensus 5 ~~~~~~~~~~AGaLF~~gwWi~iDa~v~~-~~~~~f~~~ipgi~stlgm~mvN~ 57 (125)
..++++-++..|.+...-.+++.+.--.. -.+.+..+|+.|+++.+-....+.
T Consensus 30 ~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~~ 83 (138)
T PF04657_consen 30 PLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNII 83 (138)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHHH
Confidence 34567778999999999999999865222 246788999999999988666553
No 6
>PHA00276 phage lambda Rz-like lysis protein
Probab=30.31 E-value=46 Score=25.37 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033180 4 AELWAIFGPGVAGAVFGAGWWFWIDA 29 (125)
Q Consensus 4 ~~~~~~~~~~~AGaLF~~gwWi~iDa 29 (125)
+-+++...-.+|+.||+.|||.-=|-
T Consensus 2 ~~~~~~~~~~~a~~~~~~gy~~g~~~ 27 (144)
T PHA00276 2 EFLKRAAPWVLAAMLFGLGYHLGSDS 27 (144)
T ss_pred cHHHHHHHHHHHHHHHHhhhccCCCc
Confidence 45677788899999999999987663
No 7
>PRK13499 rhamnose-proton symporter; Provisional
Probab=24.07 E-value=4.1e+02 Score=22.68 Aligned_cols=75 Identities=16% Similarity=0.242 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhccCcccccchh-----hhHHHHHHHHHHHhcccCCccccCCCCchhHHHHHHHH
Q 033180 6 LWAIFGPGVAGAVFGAGWWFWIDAVVCSSVKVSFVHY-----LPGIFASLAALMFNCVRKEDIDYSPYEEGEWRLKLWLF 80 (125)
Q Consensus 6 ~~~~~~~~~AGaLF~~gwWi~iDa~v~~~~~~~f~~~-----ipgi~stlgm~mvN~V~~~~l~~~~~~~~~~~aR~~LF 80 (125)
.+|-.-..++|.+++++-..+.=+...-.+...|.-| .+-++||++=+. ++ ++.+...|.+..+.
T Consensus 257 ~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi~--------lk--E~K~a~~k~~~~l~ 326 (345)
T PRK13499 257 ITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGLV--------LK--EWKGASRRPVRVLS 326 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhhh--------hh--hccCCCccchhHHH
Confidence 5666777999999999988887765543344445533 444999996553 22 22234578899999
Q ss_pred HHHHHHHHHH
Q 033180 81 LAYVVSFVSL 90 (125)
Q Consensus 81 igf~l~fggl 90 (125)
+|.++...|.
T Consensus 327 ~G~vliI~g~ 336 (345)
T PRK13499 327 LGCVVIILAA 336 (345)
T ss_pred HHHHHHHHHH
Confidence 9998876654
No 8
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=19.63 E-value=1.6e+02 Score=18.66 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 033180 4 AELWAIFGPGVAGAVFGAGWWFWI 27 (125)
Q Consensus 4 ~~~~~~~~~~~AGaLF~~gwWi~i 27 (125)
+.+ |.-|-+.||.||.+|--+..
T Consensus 12 ~tL-rigGLi~A~vlfi~Gi~iil 34 (50)
T PF02038_consen 12 ETL-RIGGLIFAGVLFILGILIIL 34 (50)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHC
T ss_pred hHh-hccchHHHHHHHHHHHHHHH
Confidence 444 35688999999999975543
No 9
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=18.40 E-value=1.5e+02 Score=21.23 Aligned_cols=26 Identities=31% Similarity=0.765 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHhhhh
Q 033180 74 RLKLWLFLAYVV-SFVSLAASVGLLIQ 99 (125)
Q Consensus 74 ~aR~~LFigf~l-~fggl~~s~~ili~ 99 (125)
-.-.|||.++.+ +.+.+++++-+|+.
T Consensus 65 S~~F~L~~~~ti~lv~~~~~~I~lL~s 91 (103)
T PF12955_consen 65 SVPFWLFAGFTIALVVLVAGAIGLLFS 91 (103)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999954 67777788888765
No 10
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=17.08 E-value=2.6e+02 Score=22.29 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=25.0
Q ss_pred cCcccccchhhhHHHHHHHHHHHhcccCCcc
Q 033180 33 SSVKVSFVHYLPGIFASLAALMFNCVRKEDI 63 (125)
Q Consensus 33 ~~~~~~f~~~ipgi~stlgm~mvN~V~~~~l 63 (125)
.+++.+..+|+..++-++|.++...-|.++-
T Consensus 112 ~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 112 LGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred cCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 3578889999999999999999986655444
Done!