Query 033180
Match_columns 125
No_of_seqs 104 out of 186
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 17:47:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033180.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033180hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jp3_A FXYD domain-containing 14.1 1.8E+02 0.0063 18.5 3.3 25 4-29 15-39 (67)
2 2jo1_A Phospholemman; FXYD1, N 12.8 2.1E+02 0.0071 18.5 3.3 27 2-29 12-38 (72)
3 3n2f_G Na+/K+ ATPase gamma sub 11.9 90 0.0031 17.0 1.1 23 2-25 6-28 (31)
4 2zxe_G FXYD10, phospholemman-l 11.4 2.2E+02 0.0075 18.4 3.1 26 2-28 15-40 (74)
5 1v54_K IHQ, cytochrome C oxida 7.6 3.5E+02 0.012 16.5 2.8 21 11-31 16-36 (56)
6 1bts_A BAND 3 anion transport 6.9 3.2E+02 0.011 14.0 2.0 13 9-21 7-19 (26)
7 3o59_X DNA polymerase II large 6.4 1.2E+02 0.004 24.6 0.2 18 86-103 152-169 (300)
8 3b5d_A Multidrug transporter E 5.3 4.5E+02 0.015 17.0 2.6 18 13-30 34-51 (110)
9 3arc_X Photosystem II PSBX pro 4.8 5.6E+02 0.019 14.5 3.1 19 4-22 4-22 (39)
10 2y69_K Cytochrome C oxidase po 4.8 5.9E+02 0.02 16.6 2.8 21 11-31 40-60 (80)
No 1
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=14.10 E-value=1.8e+02 Score=18.48 Aligned_cols=25 Identities=20% Similarity=0.131 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033180 4 AELWAIFGPGVAGAVFGAGWWFWIDA 29 (125)
Q Consensus 4 ~~~~~~~~~~~AGaLF~~gwWi~iDa 29 (125)
+.+ |.-|-++||.||.+|--+.+-.
T Consensus 15 ~tL-RigGLifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 15 ESL-QLGGLIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHh-eecchhhHHHHHHHHHHHHHcC
Confidence 344 3568899999999998877653
No 2
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=12.78 E-value=2.1e+02 Score=18.46 Aligned_cols=27 Identities=30% Similarity=0.315 Sum_probs=19.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 033180 2 DLAELWAIFGPGVAGAVFGAGWWFWIDA 29 (125)
Q Consensus 2 ~~~~~~~~~~~~~AGaLF~~gwWi~iDa 29 (125)
|-+.+| .-|-++||.||.+|--+.+-.
T Consensus 12 DY~tLR-iGGLifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 12 DYQSLQ-IGGLVIAGILFILGILIVLSR 38 (72)
T ss_dssp STHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHhh-ccchHHHHHHHHHHHHHHHcC
Confidence 334443 567899999999998776653
No 3
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=11.90 E-value=90 Score=16.98 Aligned_cols=23 Identities=22% Similarity=0.107 Sum_probs=15.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHH
Q 033180 2 DLAELWAIFGPGVAGAVFGAGWWF 25 (125)
Q Consensus 2 ~~~~~~~~~~~~~AGaLF~~gwWi 25 (125)
|-+.+ |.-|-..||.||.+|.-+
T Consensus 6 Dy~tL-rigGLi~a~vLfi~gi~i 28 (31)
T 3n2f_G 6 DYETV-RNGGLIFAALAFIVGLII 28 (31)
T ss_dssp CHHHH-HHHHTTTHHHHHHHHHHH
T ss_pred ChHHH-hhcchhHHHHHHHHHHHH
Confidence 33444 346778999999988644
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=11.36 E-value=2.2e+02 Score=18.45 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=19.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 033180 2 DLAELWAIFGPGVAGAVFGAGWWFWID 28 (125)
Q Consensus 2 ~~~~~~~~~~~~~AGaLF~~gwWi~iD 28 (125)
|-+.+ |.-|-++||.||.+|--+..-
T Consensus 15 DY~tL-RigGLifA~vLfi~GI~iilS 40 (74)
T 2zxe_G 15 DYYRL-RVVGLIVAAVLCVIGIIILLA 40 (74)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHh-eeccchhHHHHHHHHHHHHHc
Confidence 33444 356889999999999877664
No 5
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=7.60 E-value=3.5e+02 Score=16.53 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 033180 11 GPGVAGAVFGAGWWFWIDAVV 31 (125)
Q Consensus 11 ~~~~AGaLF~~gwWi~iDa~v 31 (125)
+..++|+.|.++-|.+.=..+
T Consensus 16 ~~L~~Ga~FC~a~W~y~~TQ~ 36 (56)
T 1v54_K 16 AVLASGATFCVAVWVYMATQI 36 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred eeeecchhhhHhhHhhhheee
Confidence 357899999999999887555
No 6
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=6.85 E-value=3.2e+02 Score=14.00 Aligned_cols=13 Identities=23% Similarity=0.562 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q 033180 9 IFGPGVAGAVFGA 21 (125)
Q Consensus 9 ~~~~~~AGaLF~~ 21 (125)
.+++.++|..|++
T Consensus 7 i~s~ai~Gi~f~l 19 (26)
T 1bts_A 7 LISTAVQGILFAL 19 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4577888888875
No 7
>3o59_X DNA polymerase II large subunit; alpha helical structure, transferase; HET: DNA; 2.20A {Pyrococcus horikoshii}
Probab=6.41 E-value=1.2e+02 Score=24.60 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhhhhcccc
Q 033180 86 SFVSLAASVGLLIQDSLV 103 (125)
Q Consensus 86 ~fggl~~s~~ili~~yv~ 103 (125)
++||-+.|+.+|+++|+-
T Consensus 152 SAGGTAqALSVLvaDyvR 169 (300)
T 3o59_X 152 SSGGTAQALSVLVGDYVR 169 (300)
T ss_dssp GSCHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 589999999999999984
No 8
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=5.26 E-value=4.5e+02 Score=16.98 Aligned_cols=18 Identities=11% Similarity=0.302 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 033180 13 GVAGAVFGAGWWFWIDAV 30 (125)
Q Consensus 13 ~~AGaLF~~gwWi~iDa~ 30 (125)
..+.+.+++++.++.=+.
T Consensus 34 ~~~~~~~~~~~~~~~~al 51 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTL 51 (110)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444455666666665543
No 9
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=4.84 E-value=5.6e+02 Score=14.46 Aligned_cols=19 Identities=26% Similarity=0.109 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033180 4 AELWAIFGPGVAGAVFGAG 22 (125)
Q Consensus 4 ~~~~~~~~~~~AGaLF~~g 22 (125)
+++.|-+.|.++|++.-+.
T Consensus 4 pSL~nFl~Sl~aG~vvvv~ 22 (39)
T 3arc_X 4 PSLKGFFIGLLSGAVVLGL 22 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 5778888898988876554
No 10
>2y69_K Cytochrome C oxidase polypeptide 7B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=4.78 E-value=5.9e+02 Score=16.59 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 033180 11 GPGVAGAVFGAGWWFWIDAVV 31 (125)
Q Consensus 11 ~~~~AGaLF~~gwWi~iDa~v 31 (125)
+..++|+.|.++-|.+.=..+
T Consensus 40 ~~L~~Ga~FC~a~W~y~~TQ~ 60 (80)
T 2y69_K 40 AVLASGATFCVAVWVYMATQI 60 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred eeeecchhHHHhhHHHhheec
Confidence 357899999999999887555
Done!