Query 033180
Match_columns 125
No_of_seqs 104 out of 186
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 17:47:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033180.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033180hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftc_ f.25.1.1 (C:) Cytochro 15.2 55 0.004 21.7 3.0 20 77-96 11-31 (185)
2 d1v54k_ f.23.5.1 (K:) Mitochon 8.8 1.4E+02 0.01 16.4 2.8 21 11-31 11-31 (49)
3 d2axtt1 f.23.34.1 (T:1-30) Pho 5.4 1.9E+02 0.014 14.1 1.9 15 81-95 4-18 (30)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.9 2.8E+02 0.02 19.4 3.4 53 6-58 10-72 (248)
5 d2hgsa1 c.30.1.4 (A:202-303) E 4.1 1.3E+02 0.0098 18.7 0.9 12 68-79 74-85 (102)
6 d1p7ga2 d.44.1.1 (A:104-222) F 3.6 24 0.0017 22.8 -3.4 25 4-29 20-45 (119)
7 d3cx5i1 f.23.14.1 (I:4-58) Sub 3.4 2.8E+02 0.021 15.3 1.8 13 9-21 14-26 (55)
8 d1ppjw_ f.23.14.1 (W:) Subunit 3.2 2.9E+02 0.021 15.6 1.8 13 9-21 20-32 (62)
9 d1nekd_ f.21.2.2 (D:) Succinat 3.0 3.5E+02 0.026 16.0 2.2 30 75-104 55-84 (113)
10 d1m0wa1 c.30.1.4 (A:216-323) E 3.0 2E+02 0.014 17.9 0.9 10 70-79 81-90 (108)
No 1
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=15.24 E-value=55 Score=21.74 Aligned_cols=20 Identities=25% Similarity=0.625 Sum_probs=11.9
Q ss_pred HHHHHHH-HHHHHHHHHHHHh
Q 033180 77 LWLFLAY-VVSFVSLAASVGL 96 (125)
Q Consensus 77 ~~LFigf-~l~fggl~~s~~i 96 (125)
.|+|+.- .+.|+++..+..+
T Consensus 11 ~w~Fi~se~~~F~~lf~~y~~ 31 (185)
T d1fftc_ 11 FWIYLMSDCILFSILFATYAV 31 (185)
T ss_dssp HHTTHHHHTTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 4555544 5677777766544
No 2
>d1v54k_ f.23.5.1 (K:) Mitochondrial cytochrome c oxidase subunit VIIb {Cow (Bos taurus) [TaxId: 9913]}
Probab=8.76 E-value=1.4e+02 Score=16.41 Aligned_cols=21 Identities=19% Similarity=0.482 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 033180 11 GPGVAGAVFGAGWWFWIDAVV 31 (125)
Q Consensus 11 ~~~~AGaLF~~gwWi~iDa~v 31 (125)
+..++|+.|.++-|.+.=...
T Consensus 11 ~vL~~Ga~fc~avW~yv~TQ~ 31 (49)
T d1v54k_ 11 AVLASGATFCVAVWVYMATQI 31 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEecccchhhhhhhheeeee
Confidence 457899999999999876554
No 3
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.38 E-value=1.9e+02 Score=14.05 Aligned_cols=15 Identities=27% Similarity=0.385 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHH
Q 033180 81 LAYVVSFVSLAASVG 95 (125)
Q Consensus 81 igf~l~fggl~~s~~ 95 (125)
+.+++.|++++|-..
T Consensus 4 i~yv~ifac~i~lff 18 (30)
T d2axtt1 4 ITYVFIFACIIALFF 18 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHH
Confidence 456788888887543
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.94 E-value=2.8e+02 Score=19.43 Aligned_cols=53 Identities=11% Similarity=0.187 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhh----------ccCcccccchhhhHHHHHHHHHHHhcc
Q 033180 6 LWAIFGPGVAGAVFGAGWWFWIDAVV----------CSSVKVSFVHYLPGIFASLAALMFNCV 58 (125)
Q Consensus 6 ~~~~~~~~~AGaLF~~gwWi~iDa~v----------~~~~~~~f~~~ipgi~stlgm~mvN~V 58 (125)
+=+.+..|..-.+++-+-|.+.-..+ .++..++..|-+||+.--+.+.+.=.+
T Consensus 10 l~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~Fvi~Pi~ 72 (248)
T d2r6gf1 10 LLGLLVGYLVVLMYAQGEYLFAITTLILSSAGLYIFANRKAYAWRYVYPGMAGMGLFVLFPLV 72 (248)
T ss_dssp HHHHHHHHTHHHHHGGGCHHHHHHHHHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHheEEEEEccCccceehhhhHHHHHHHHHHHhhe
Confidence 34566777777888877777655221 256788888999999887776665433
No 5
>d2hgsa1 c.30.1.4 (A:202-303) Eukaryotic glutathione synthetase, substrate-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.07 E-value=1.3e+02 Score=18.67 Aligned_cols=12 Identities=33% Similarity=0.792 Sum_probs=8.5
Q ss_pred CCchhHHHHHHH
Q 033180 68 YEEGEWRLKLWL 79 (125)
Q Consensus 68 ~~~~~~~aR~~L 79 (125)
|.+..|.||+.+
T Consensus 74 Y~~~~W~aRl~l 85 (102)
T d2hgsa1 74 YSLQNWEARLLL 85 (102)
T ss_dssp CCHHHHHHHHHH
T ss_pred CChhhHHHHHHH
Confidence 444579999865
No 6
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=3.60 E-value=24 Score=22.76 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHhh
Q 033180 4 AELWAIFGPGVAGAVFGAGW-WFWIDA 29 (125)
Q Consensus 4 ~~~~~~~~~~~AGaLF~~gw-Wi~iDa 29 (125)
|..+..+-.... .+|+.|| |+..|.
T Consensus 20 d~fk~~f~~~a~-~~fGsGW~wLv~~~ 45 (119)
T d1p7ga2 20 EKFKEEFSQAAK-NVEGVGWAILVYEP 45 (119)
T ss_dssp HHHHHHHHHHHH-TCSSSEEEEEEEET
T ss_pred HHHHHHHHHhhh-ccccceEEEEEEec
Confidence 333444333333 3599999 888873
No 7
>d3cx5i1 f.23.14.1 (I:4-58) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.40 E-value=2.8e+02 Score=15.29 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHH
Q 033180 9 IFGPGVAGAVFGA 21 (125)
Q Consensus 9 ~~~~~~AGaLF~~ 21 (125)
-++.+++||.++-
T Consensus 14 ~~~tI~~gAf~fe 26 (55)
T d3cx5i1 14 FVGTIFAGAFVFQ 26 (55)
T ss_dssp CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567888887764
No 8
>d1ppjw_ f.23.14.1 (W:) Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.23 E-value=2.9e+02 Score=15.59 Aligned_cols=13 Identities=31% Similarity=0.156 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHH
Q 033180 9 IFGPGVAGAVFGA 21 (125)
Q Consensus 9 ~~~~~~AGaLF~~ 21 (125)
-++.+++||+|+-
T Consensus 20 f~~tI~~gAf~fE 32 (62)
T d1ppjw_ 20 FALTIVVGALFFE 32 (62)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4567788887765
No 9
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=3.02 E-value=3.5e+02 Score=16.04 Aligned_cols=30 Identities=13% Similarity=0.161 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccccc
Q 033180 75 LKLWLFLAYVVSFVSLAASVGLLIQDSLVK 104 (125)
Q Consensus 75 aR~~LFigf~l~fggl~~s~~ili~~yv~~ 104 (125)
-|+.+.+-+..++-=---.++..+.||+.+
T Consensus 55 ~~il~~l~l~~~~~H~~lGl~~IieDYi~~ 84 (113)
T d1nekd_ 55 TKVFTLLALFSILIHAWIGMWQVLTDYVKP 84 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHHHhcCC
Confidence 333333333333333333677778888765
No 10
>d1m0wa1 c.30.1.4 (A:216-323) Eukaryotic glutathione synthetase, substrate-binding domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=2.98 E-value=2e+02 Score=17.90 Aligned_cols=10 Identities=40% Similarity=1.096 Sum_probs=7.7
Q ss_pred chhHHHHHHH
Q 033180 70 EGEWRLKLWL 79 (125)
Q Consensus 70 ~~~~~aR~~L 79 (125)
+..|.||+.|
T Consensus 81 ~~~W~aRl~l 90 (108)
T d1m0wa1 81 EKDWEARLFL 90 (108)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4679999865
Done!