Your job contains 1 sequence.
>033181
MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESL
TQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA
QGRRS
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033181
(125 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2202740 - symbol:AT1G60000 species:3702 "Arabi... 496 2.0e-47 1
TAIR|locus:2049721 - symbol:AT2G37220 species:3702 "Arabi... 216 1.4e-22 2
TAIR|locus:2122009 - symbol:RBP31 "AT4G24770" species:370... 250 2.4e-21 1
TAIR|locus:2157702 - symbol:CP31B "chloroplast RNA-bindin... 240 2.7e-20 1
TAIR|locus:2079874 - symbol:CP33 "chloroplast RNA-binding... 230 3.1e-19 1
TAIR|locus:2083810 - symbol:PSRP2 "plastid-specific... 218 5.8e-18 1
UNIPROTKB|Q43472 - symbol:blt801 "Glycine-rich RNA-bindin... 213 2.0e-17 1
TAIR|locus:2136298 - symbol:CCR1 "cold, circadian rhythm,... 208 6.7e-17 1
TAIR|locus:2049359 - symbol:GRP7 "AT2G21660" species:3702... 200 4.7e-16 1
TAIR|locus:2062379 - symbol:AT2G35410 species:3702 "Arabi... 197 1.2e-15 1
TAIR|locus:2076096 - symbol:GRP4 "glycine-rich RNA-bindin... 196 1.3e-15 1
TAIR|locus:2079276 - symbol:ATRZ-1A species:3702 "Arabido... 192 3.3e-15 1
TAIR|locus:2159401 - symbol:GR-RBP3 "glycine-rich RNA-bin... 192 4.8e-15 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 190 5.4e-15 1
TAIR|locus:2119495 - symbol:GR-RBP2 "AT4G13850" species:3... 190 5.4e-15 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 188 8.8e-15 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 188 8.8e-15 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 195 9.0e-15 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 192 1.1e-14 1
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 192 1.1e-14 1
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 192 1.1e-14 1
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 192 1.2e-14 1
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 192 1.3e-14 1
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 192 1.3e-14 1
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 192 1.3e-14 1
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 192 1.3e-14 1
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 192 1.3e-14 1
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 192 1.3e-14 1
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 190 1.4e-14 1
TAIR|locus:2077427 - symbol:AT3G08000 species:3702 "Arabi... 185 1.8e-14 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 188 3.2e-14 1
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 188 3.5e-14 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 190 3.6e-14 1
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 188 5.9e-14 1
POMBASE|SPAC140.02 - symbol:gar2 "nucleolar protein requi... 188 6.5e-14 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 185 6.7e-14 1
TAIR|locus:2200975 - symbol:AT1G01080 species:3702 "Arabi... 181 7.0e-14 1
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 184 9.6e-14 1
UNIPROTKB|Q83CD7 - symbol:CBU_1183 "Glycine-rich RNA-bind... 178 1.0e-13 1
TIGR_CMR|CBU_1183 - symbol:CBU_1183 "nucleic acid binding... 178 1.0e-13 1
CGD|CAL0005232 - symbol:orf19.6090 species:5476 "Candida ... 184 1.1e-13 1
UNIPROTKB|Q5AB84 - symbol:NSR1 "Potential nuclear localiz... 184 1.1e-13 1
TAIR|locus:2119505 - symbol:AT4G13860 species:3702 "Arabi... 176 1.6e-13 1
WB|WBGene00011156 - symbol:R09B3.3 species:6239 "Caenorha... 176 1.6e-13 1
UNIPROTKB|O45713 - symbol:R09B3.3 "Protein R09B3.3" speci... 176 1.6e-13 1
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 173 3.4e-13 1
UNIPROTKB|Q3AF33 - symbol:CHY_0389 "RNA-binding protein" ... 173 3.4e-13 1
TIGR_CMR|CHY_0389 - symbol:CHY_0389 "RNA-binding protein"... 173 3.4e-13 1
TAIR|locus:2019622 - symbol:GR-RBP5 "AT1G74230" species:3... 173 5.6e-13 1
ZFIN|ZDB-GENE-030131-5841 - symbol:cirbp "cold inducible ... 171 5.6e-13 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 177 6.5e-13 1
SGD|S000003391 - symbol:NSR1 "Nucleolar protein that bind... 177 6.7e-13 1
UNIPROTKB|Q28IQ9 - symbol:cirbp "Cold-inducible RNA-bindi... 169 9.1e-13 1
TAIR|locus:2122368 - symbol:AT4G09040 species:3702 "Arabi... 172 9.2e-13 1
ASPGD|ASPL0000040642 - symbol:AN2989 species:162425 "Emer... 167 1.5e-12 1
TAIR|locus:2160752 - symbol:AT5G06210 species:3702 "Arabi... 167 1.5e-12 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 173 1.5e-12 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 173 1.5e-12 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 173 1.5e-12 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 173 1.6e-12 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 173 1.6e-12 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 173 1.6e-12 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 173 2.0e-12 1
ZFIN|ZDB-GENE-050417-329 - symbol:zgc:112425 "zgc:112425"... 165 2.4e-12 1
ASPGD|ASPL0000076731 - symbol:AN4865 species:162425 "Emer... 172 3.8e-12 1
WB|WBGene00011059 - symbol:R06C1.4 species:6239 "Caenorha... 163 3.9e-12 1
WB|WBGene00000774 - symbol:cpf-2 species:6239 "Caenorhabd... 167 4.8e-12 1
UNIPROTKB|E2R1C1 - symbol:CSTF2T "Uncharacterized protein... 169 5.6e-12 1
UNIPROTKB|G4MY43 - symbol:MGG_01268 "Nuclear localization... 169 7.0e-12 1
UNIPROTKB|G3XAP0 - symbol:RBM23 "RNA binding motif protei... 162 7.4e-12 1
FB|FBgn0031883 - symbol:CG11266 species:7227 "Drosophila ... 170 7.8e-12 1
UNIPROTKB|Q60A61 - symbol:MCA1010 "RNA-binding protein" s... 160 8.2e-12 1
UNIPROTKB|J9P8Y3 - symbol:CSTF2T "Uncharacterized protein... 169 9.0e-12 1
UNIPROTKB|F1SD01 - symbol:CSTF2T "Uncharacterized protein... 169 1.1e-11 1
UNIPROTKB|Q9H0L4 - symbol:CSTF2T "Cleavage stimulation fa... 169 1.1e-11 1
UNIPROTKB|E1P5S2 - symbol:RBM39 "RNA-binding protein 39" ... 165 1.1e-11 1
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 167 1.1e-11 1
RGD|1310026 - symbol:Cstf2t "cleavage stimulation factor,... 169 1.1e-11 1
UNIPROTKB|G3MZ78 - symbol:CSTF2T "Uncharacterized protein... 169 1.1e-11 1
MGI|MGI:1932622 - symbol:Cstf2t "cleavage stimulation fac... 169 1.1e-11 1
UNIPROTKB|E9PID8 - symbol:CSTF2 "Cleavage stimulation fac... 166 1.2e-11 1
UNIPROTKB|G3V5Z6 - symbol:RBM23 "Probable RNA-binding pro... 158 1.3e-11 1
UNIPROTKB|H0YJJ3 - symbol:RBM23 "Probable RNA-binding pro... 158 1.3e-11 1
ZFIN|ZDB-GENE-050327-97 - symbol:rbm39b "RNA binding moti... 167 1.4e-11 1
UNIPROTKB|Q5ZLS0 - symbol:CSTF2 "Uncharacterized protein"... 166 1.4e-11 1
UNIPROTKB|G3XAC6 - symbol:RBM39 "RNA-binding region (RNP1... 165 1.4e-11 1
UNIPROTKB|B4E2X2 - symbol:CIRBP "Cold-inducible RNA-bindi... 159 1.5e-11 1
UNIPROTKB|J9NX69 - symbol:CSTF2 "Uncharacterized protein"... 166 1.6e-11 1
UNIPROTKB|Q3SZN4 - symbol:CIRBP "Uncharacterized protein"... 157 1.7e-11 1
UNIPROTKB|E2R6G2 - symbol:CIRBP "Uncharacterized protein"... 157 1.7e-11 1
UNIPROTKB|F6XHA7 - symbol:CIRBP "Uncharacterized protein"... 157 1.7e-11 1
UNIPROTKB|K7EJV5 - symbol:CIRBP "Cold-inducible RNA-bindi... 157 1.7e-11 1
UNIPROTKB|K7EMY9 - symbol:CIRBP "Cold-inducible RNA-bindi... 157 1.7e-11 1
UNIPROTKB|K7EPM4 - symbol:CIRBP "Cold-inducible RNA-bindi... 157 1.7e-11 1
UNIPROTKB|K7EQR7 - symbol:CIRBP "Cold-inducible RNA-bindi... 157 1.7e-11 1
UNIPROTKB|K7ER40 - symbol:CIRBP "Cold-inducible RNA-bindi... 157 1.7e-11 1
UNIPROTKB|Q14011 - symbol:CIRBP "Cold-inducible RNA-bindi... 157 1.7e-11 1
UNIPROTKB|F1S6R1 - symbol:CIRBP "Uncharacterized protein"... 157 1.7e-11 1
UNIPROTKB|Q5RF83 - symbol:CIRBP "Cold-inducible RNA-bindi... 157 1.7e-11 1
UNIPROTKB|F1S1L9 - symbol:LOC100515986 "Uncharacterized p... 166 1.8e-11 1
WARNING: Descriptions of 1567 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 94/125 (75%), Positives = 113/125 (90%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP-KLPLYAETDFKLFVGNLSWSVTTES 59
MS VEDCN +I+NLDG EYLGR L+VNF+DKPKP K PLY ET+ KLFVGNLSW+VT+ES
Sbjct: 133 MSNVEDCNIIIDNLDGTEYLGRALKVNFADKPKPNKEPLYPETEHKLFVGNLSWTVTSES 192
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L AF+E G+VVGARV++DG++GRSRGYGFVCYS+KAEMETALESL+G ELEGRA+RV+L
Sbjct: 193 LAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNL 252
Query: 120 AQGRR 124
AQG++
Sbjct: 253 AQGKK 257
Score = 146 (56.5 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 29/81 (35%), Positives = 50/81 (61%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KL+ GNL ++V + +L Q Q++ N VLY+ ++G+SRG+ FV S +
Sbjct: 81 AAVNTKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCN 140
Query: 100 TALESLNGVELEGRAMRVSLA 120
+++L+G E GRA++V+ A
Sbjct: 141 IIIDNLDGTEYLGRALKVNFA 161
>TAIR|locus:2049721 [details] [associations]
symbol:AT2G37220 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009409
"response to cold" evidence=IEP;RCA] [GO:0010319 "stromule"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009737
"response to abscisic acid stimulus" evidence=IEP] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0019684
"photosynthesis, light reaction" evidence=RCA] [GO:0042742 "defense
response to bacterium" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0008266 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AC005896
GO:GO:0030529 GO:GO:0009535 GO:GO:0010319 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:AC006260 KO:K11294 EMBL:AF370167
EMBL:AY048251 EMBL:AY059129 IPI:IPI00540246 PIR:A84790
RefSeq:NP_181259.1 UniGene:At.25300 ProteinModelPortal:Q9ZUU4
SMR:Q9ZUU4 IntAct:Q9ZUU4 STRING:Q9ZUU4 SWISS-2DPAGE:Q9ZUU4
PaxDb:Q9ZUU4 PRIDE:Q9ZUU4 ProMEX:Q9ZUU4 EnsemblPlants:AT2G37220.1
GeneID:818299 KEGG:ath:AT2G37220 GeneFarm:4058 TAIR:At2g37220
InParanoid:Q9ZUU4 OMA:PFNVDSA PhylomeDB:Q9ZUU4
ProtClustDB:CLSN2684922 Genevestigator:Q9ZUU4 GermOnline:AT2G37220
Uniprot:Q9ZUU4
Length = 289
Score = 216 (81.1 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 40/79 (50%), Positives = 58/79 (73%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+++VGNLSW V +L F E G VV ARV+YD +SGRS+G+GFV Y + E++ A++S
Sbjct: 205 RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKS 264
Query: 105 LNGVELEGRAMRVSLAQGR 123
L+G +L+GR +RVS A+ R
Sbjct: 265 LDGADLDGRQIRVSEAEAR 283
Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
Identities = 42/91 (46%), Positives = 59/91 (64%)
Query: 28 FSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 87
F+D PK ++ D KLFVGNL ++V + L Q F+ GNV V+YD +GRSRG+
Sbjct: 76 FADVAPPKEQSFS-ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134
Query: 88 GFVCYSTKAEMETALESLNGVELEGRAMRVS 118
GFV S+ +E+E A + NG EL+GR +RV+
Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
Score = 60 (26.2 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35
MS+V + A + +G E GR LRVN + P PK
Sbjct: 139 MSSVSEVEAAAQQFNGYELDGRPLRVN-AGPPPPK 172
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
Identities = 54/127 (42%), Positives = 80/127 (62%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFS----DKPKPKLPLYAETDFKLFVGNLSWSVT 56
MS+V++ +E + + GR+L VN + +P+ + P E F+++VGNL W V
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVYEPAFRVYVGNLPWDVD 256
Query: 57 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116
L Q F E+G VV ARV+YD E+GRSRG+GFV S E+ A+ +L+G LEGRA+R
Sbjct: 257 NGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIR 316
Query: 117 VSLAQGR 123
V++A+ R
Sbjct: 317 VNVAEER 323
Score = 171 (65.3 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVGNL++ V +++L F++ G V A V+Y+ E+ +SRG+GFV S+ E ETA+E
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
N +L GR + V+ A R S
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGS 231
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 53/127 (41%), Positives = 81/127 (63%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFS----DKPKPKLPLYAETDFKLFVGNLSWSVT 56
MSTVE+ +E + E GR L VN + +P+ + +Y + F+++VGNL W V
Sbjct: 161 MSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVY-DAAFRIYVGNLPWDVD 219
Query: 57 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116
+ L + F E+G VV ARV+ D E+GRSRG+GFV S + E+ A+ +L+G LEGRA++
Sbjct: 220 SGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIK 279
Query: 117 VSLAQGR 123
V++A+ R
Sbjct: 280 VNVAEER 286
Score = 163 (62.4 bits), Expect = 8.0e-12, P = 8.0e-12
Identities = 34/81 (41%), Positives = 51/81 (62%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVGNL + V +++L F++ G V + V+Y+ ++ +SRG+GFV ST E E A+E
Sbjct: 114 KLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEK 173
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
N E+ GR + V+ A R S
Sbjct: 174 FNSFEVNGRRLTVNRAAPRGS 194
>TAIR|locus:2079874 [details] [associations]
symbol:CP33 "chloroplast RNA-binding protein 33"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009579
"thylakoid" evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0016226 "iron-sulfur cluster assembly"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0048481
"ovule development" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009579 HSSP:P19339
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:AL050300 UniGene:At.65006
UniGene:At.71002 EMBL:AY039607 EMBL:AY078022 EMBL:AY085279
EMBL:D31714 IPI:IPI00543679 PIR:S53494 RefSeq:NP_190806.1
ProteinModelPortal:Q39061 SMR:Q39061 STRING:Q39061 PaxDb:Q39061
PRIDE:Q39061 EnsemblPlants:AT3G52380.1 GeneID:824403
KEGG:ath:AT3G52380 TAIR:At3g52380 InParanoid:Q39061 OMA:FISFESA
PhylomeDB:Q39061 ProtClustDB:CLSN2684767 Genevestigator:Q39061
Uniprot:Q39061
Length = 329
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 45/135 (33%), Positives = 84/135 (62%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK--------PKLP----LYAETDFKLFV 48
M ++E+ ++ + + GR ++VNF + P+ K+ Y ++ K++
Sbjct: 164 MGSIEEAKEAMQMFNSSQIGGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYA 223
Query: 49 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108
GNL W++T++ L AF + V+GA+V+Y+ +GRSRG+GF+ + + +++AL ++NGV
Sbjct: 224 GNLGWNLTSQGLKDAFGDQPGVLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGV 283
Query: 109 ELEGRAMRVSLAQGR 123
E+EGRA+R++LA R
Sbjct: 284 EVEGRALRLNLASER 298
Score = 154 (59.3 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 28/77 (36%), Positives = 50/77 (64%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VGNL +++T+ L+Q F E G VV +++YD + RSRG+GFV + E + A++
Sbjct: 117 RLYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQM 176
Query: 105 LNGVELEGRAMRVSLAQ 121
N ++ GR ++V+ +
Sbjct: 177 FNSSQIGGRTVKVNFPE 193
>TAIR|locus:2083810 [details] [associations]
symbol:PSRP2 "plastid-specific ribosomal protein 2"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0009773
"photosynthetic electron transport in photosystem I" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] [GO:0045036 "protein
targeting to chloroplast" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0009941 GO:GO:0003676 GO:GO:0009535 KO:K13126 HSSP:Q61474
EMBL:AY070427 EMBL:AY133746 IPI:IPI00523226 RefSeq:NP_001030841.1
RefSeq:NP_566958.3 UniGene:At.3215 ProteinModelPortal:Q8VYM4
SMR:Q8VYM4 STRING:Q8VYM4 PRIDE:Q8VYM4 ProMEX:Q8VYM4
EnsemblPlants:AT3G52150.1 EnsemblPlants:AT3G52150.2 GeneID:824379
KEGG:ath:AT3G52150 TAIR:At3g52150 InParanoid:Q8VYM4 OMA:AEVMYDK
PhylomeDB:Q8VYM4 ProtClustDB:CLSN2918324 ArrayExpress:Q8VYM4
Genevestigator:Q8VYM4 Uniprot:Q8VYM4
Length = 253
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 50/130 (38%), Positives = 80/130 (61%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP---KPKLPL-------YAETDFKLFVGN 50
M +VED NAV+E L+G GR ++VN ++KP P L + + ++ +K++VGN
Sbjct: 124 MKSVEDANAVVEKLNGNTVEGREIKVNITEKPIASSPDLSVLQSEDSAFVDSPYKVYVGN 183
Query: 51 LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110
L+ +VT E L F E G VV A+V + +S G+GFV +S++ ++E A+ +LN L
Sbjct: 184 LAKTVTKEMLENLFSEKGKVVSAKVSRVPGTSKSTGFGFVTFSSEEDVEAAIVALNNSLL 243
Query: 111 EGRAMRVSLA 120
EG+ +RV+ A
Sbjct: 244 EGQKIRVNKA 253
Score = 154 (59.3 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 32/92 (34%), Positives = 55/92 (59%)
Query: 30 DKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 89
+KP P +E ++++GN+ +VT E LT+ +E+G V +V+YD SGRSR +GF
Sbjct: 63 EKPAALDPS-SEAARRVYIGNIPRTVTNEQLTKLVEEHGAVEKVQVMYDKYSGRSRRFGF 121
Query: 90 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ + +E LNG +EGR ++V++ +
Sbjct: 122 ATMKSVEDANAVVEKLNGNTVEGREIKVNITE 153
>UNIPROTKB|Q43472 [details] [associations]
symbol:blt801 "Glycine-rich RNA-binding protein blt801"
species:4513 "Hordeum vulgare" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0009409 "response to cold" evidence=IDA] [GO:0009737 "response
to abscisic acid stimulus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009737 GO:GO:0000166 GO:GO:0009409 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0003697
EMBL:U49482 PIR:S71453 HSSP:P11940 ProteinModelPortal:Q43472
Gramene:Q43472 Genevestigator:Q43472 Uniprot:Q43472
Length = 161
Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
Identities = 37/86 (43%), Positives = 62/86 (72%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A+ +++ FVG L W+ +SL AF +YG+V+ ++++ D E+GRSRG+GFV +++ M
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+E++NG +L+GR + V+ AQ RRS
Sbjct: 62 QAIEAMNGQDLDGRNITVNEAQSRRS 87
>TAIR|locus:2136298 [details] [associations]
symbol:CCR1 "cold, circadian rhythm, and RNA binding 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009507 "chloroplast" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0009409 "response to
cold" evidence=IEP] [GO:0005618 "cell wall" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009651 "response to salt
stress" evidence=IEP] [GO:0005777 "peroxisome" evidence=IDA]
[GO:0010043 "response to zinc ion" evidence=IEP] [GO:0009737
"response to abscisic acid stimulus" evidence=IDA] [GO:0005829
"cytosol" evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
[GO:0048046 "apoplast" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0000380 "alternative mRNA splicing, via spliceosome"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005886 GO:GO:0009506
GO:GO:0009737 GO:GO:0005794 GO:GO:0005618 GO:GO:0009507
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0005730 GO:GO:0005777
GO:GO:0000166 GO:GO:0010043 GO:GO:0048046 GO:GO:0009651
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003723
EMBL:AL161594 eggNOG:COG0724 EMBL:AL050351 GO:GO:0000380
HOGENOM:HOG000276232 UniGene:At.23968 ProtClustDB:CLSN2913158
EMBL:Z14988 EMBL:L00649 EMBL:L04171 EMBL:AY034997 EMBL:AY063005
IPI:IPI00520057 IPI:IPI00526742 PIR:S30148 RefSeq:NP_195637.1
ProteinModelPortal:Q03251 SMR:Q03251 MINT:MINT-1163792
STRING:Q03251 PaxDb:Q03251 PRIDE:Q03251 ProMEX:Q03251
EnsemblPlants:AT4G39260.1 GeneID:830082 KEGG:ath:AT4G39260
TAIR:At4g39260 InParanoid:Q03251 OMA:GNNSGGY Genevestigator:Q03251
Uniprot:Q03251
Length = 169
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 36/86 (41%), Positives = 59/86 (68%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+E +++ FVG L+W+ E L + F ++G+V+ ++++ D ESGRSRG+GFV + + M
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+E +NG EL+GR + V+ AQ R S
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQSRGS 87
>TAIR|locus:2049359 [details] [associations]
symbol:GRP7 "AT2G21660" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP;RCA] [GO:0046686 "response to cadmium ion"
evidence=IEP;RCA] [GO:0010501 "RNA secondary structure unwinding"
evidence=IDA] [GO:0032508 "DNA duplex unwinding" evidence=IDA]
[GO:0045087 "innate immune response" evidence=IMP;IDA] [GO:0005777
"peroxisome" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0009507 "chloroplast" evidence=IDA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA;IMP] [GO:0010043 "response to zinc ion" evidence=IEP]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0048046 "apoplast" evidence=IDA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0006833 "water transport" evidence=RCA]
[GO:0006972 "hyperosmotic response" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0009266 "response to temperature
stimulus" evidence=RCA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0009506 GO:GO:0005634
GO:GO:0009507 GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005777 GO:GO:0010119 GO:GO:0000166 GO:GO:0010043
GO:GO:0048046 GO:GO:0007623 GO:GO:0009651 GO:GO:0009409
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0003690
GO:GO:0003697 GO:GO:0006406 GO:GO:0010228 eggNOG:COG0724
GO:GO:0000380 HOGENOM:HOG000276232 GO:GO:0010501 GO:GO:0032508
EMBL:AC007119 UniGene:At.22672 UniGene:At.23628 EMBL:Z14987
EMBL:L00648 EMBL:L04172 EMBL:AF428381 EMBL:AY054284 EMBL:AY042826
EMBL:AY072523 EMBL:AK318968 EMBL:AY085214 IPI:IPI00523161
IPI:IPI00542675 PIR:S30147 RefSeq:NP_179760.1 UniGene:At.24279
UniGene:At.72988 ProteinModelPortal:Q03250 SMR:Q03250 IntAct:Q03250
MINT:MINT-1163877 STRING:Q03250 PaxDb:Q03250 PRIDE:Q03250
ProMEX:Q03250 EnsemblPlants:AT2G21660.1 GeneID:816705
KEGG:ath:AT2G21660 TAIR:At2g21660 InParanoid:Q03250 OMA:SQHEDGH
ProtClustDB:CLSN2913158 Genevestigator:Q03250 Uniprot:Q03250
Length = 176
Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
Identities = 34/85 (40%), Positives = 60/85 (70%)
Query: 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 100
+ +++ FVG L+W+ +L AF +YG+V+ ++++ D E+GRSRG+GFV + + M+
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 101 ALESLNGVELEGRAMRVSLAQGRRS 125
A+E +NG +L+GR++ V+ AQ R S
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQSRGS 89
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 197 (74.4 bits), Expect = 1.2e-15, P = 1.2e-15
Identities = 52/137 (37%), Positives = 74/137 (54%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFS---DKPKPK----LPLYA--ETDFKLFVGNL 51
M++ E+ A I+ D + GRI+ V+F+ KP PK LP A +T KL+V NL
Sbjct: 142 MASGEEAQAAIDKFDTFQVSGRIISVSFARRFKKPTPKSPNDLPSPAPGDTRHKLYVSNL 201
Query: 52 SWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110
+W + L + F N V ARV++ GRS GYGFV ++T+ E E A+ LNG E+
Sbjct: 202 AWKARSTHLRELFTAADFNPVSARVVFADPEGRSSGYGFVSFATREEAENAITKLNGKEI 261
Query: 111 EGR--AMRVSLAQGRRS 125
GR ++ SL S
Sbjct: 262 MGRPITLKFSLRSASES 278
Score = 120 (47.3 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 23/77 (29%), Positives = 45/77 (58%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFV NL WS++ +++ F + G V ++ + G++RG+ FV ++ E + A++
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQ-KDGKNRGFAFVTMASGEEAQAAIDK 154
Query: 105 LNGVELEGRAMRVSLAQ 121
+ ++ GR + VS A+
Sbjct: 155 FDTFQVSGRIISVSFAR 171
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
Identities = 40/81 (49%), Positives = 52/81 (64%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVG LSW SL QAF +G V A V+ D E+GRSRG+GFV +S + A++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
++G EL GR +RV+LA R S
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 32/81 (39%), Positives = 57/81 (70%)
Query: 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 100
+ +++ F+G L+W+ + L AF++YG++V A+V+ D SGRSRG+GF+ + K M+
Sbjct: 4 DPEYRCFIGGLAWTTSDRGLRDAFEKYGHLVEAKVVLDKFSGRSRGFGFITFDEKKAMDE 63
Query: 101 ALESLNGVELEGRAMRVSLAQ 121
A+ ++NG++L+GR + V AQ
Sbjct: 64 AIAAMNGMDLDGRTITVDKAQ 84
>TAIR|locus:2159401 [details] [associations]
symbol:GR-RBP3 "glycine-rich RNA-binding protein 3"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0005507
"copper ion binding" evidence=IDA] [GO:0006626 "protein targeting
to mitochondrion" evidence=RCA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010228
"vegetative to reproductive phase transition of meristem"
evidence=RCA] [GO:0034968 "histone lysine methylation"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005739 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0005507 EMBL:AB006696 eggNOG:COG0724
HSSP:Q14103 KO:K12741 EMBL:AY060565 EMBL:AY125548 EMBL:AB493804
IPI:IPI00542729 RefSeq:NP_200911.1 UniGene:At.24064
ProteinModelPortal:Q9FNR1 SMR:Q9FNR1 STRING:Q9FNR1 PaxDb:Q9FNR1
PRIDE:Q9FNR1 EnsemblPlants:AT5G61030.1 GeneID:836224
KEGG:ath:AT5G61030 GeneFarm:3953 TAIR:At5g61030
HOGENOM:HOG000029199 InParanoid:Q9FNR1 OMA:YANDRTS
ProtClustDB:CLSN2916423 Genevestigator:Q9FNR1 Uniprot:Q9FNR1
Length = 309
Score = 192 (72.6 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 35/81 (43%), Positives = 58/81 (71%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLF+G +++S+ +SL +AF +YG VV RV+ D E+GRSRG+GFV +++ +A+++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
L+G +L GR ++V+ A R S
Sbjct: 101 LDGRDLHGRVVKVNYANDRTS 121
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 40/113 (35%), Positives = 66/113 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 21 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 79
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R +
Sbjct: 80 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTN 132
>TAIR|locus:2119495 [details] [associations]
symbol:GR-RBP2 "AT4G13850" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0009409 "response to cold"
evidence=IGI;IEP;IMP] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0005524 "ATP binding" evidence=IDA] [GO:0001072
"RNA binding transcription antitermination factor activity"
evidence=IDA] [GO:0006970 "response to osmotic stress"
evidence=IMP] [GO:0009631 "cold acclimation" evidence=IMP]
[GO:0009651 "response to salt stress" evidence=IMP] [GO:0009845
"seed germination" evidence=IMP] [GO:0031564 "transcription
antitermination" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=RCA]
[GO:0006364 "rRNA processing" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005739 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0005507 GO:GO:0003723
GO:GO:0006970 GO:GO:0009845 GO:GO:0003690 GO:GO:0003697
eggNOG:COG0724 EMBL:AL035528 EMBL:AL161537 HOGENOM:HOG000276232
EMBL:AJ002892 EMBL:AY072361 EMBL:BT002197 EMBL:AY085621 EMBL:X69377
EMBL:Z18189 IPI:IPI00527583 PIR:S31443 PIR:T05254
RefSeq:NP_193121.1 UniGene:At.15585 UniGene:At.2
ProteinModelPortal:Q9SVM8 SMR:Q9SVM8 IntAct:Q9SVM8 STRING:Q9SVM8
PaxDb:Q9SVM8 PRIDE:Q9SVM8 ProMEX:Q9SVM8 EnsemblPlants:AT4G13850.1
GeneID:827019 KEGG:ath:AT4G13850 GeneFarm:3949 TAIR:At4g13850
InParanoid:Q9SVM8 OMA:ISEMDGK PhylomeDB:Q9SVM8 ProtClustDB:PLN03134
Genevestigator:Q9SVM8 Uniprot:Q9SVM8
Length = 158
Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
Identities = 44/110 (40%), Positives = 61/110 (55%)
Query: 20 LGRILRVNFSDKPK-PKLPLYAETDF---KLFVGNLSWSVTTESLTQAFQEYGNVVGARV 75
LG +LR N S P + KLF+G LSW SL AF +G+VV A+V
Sbjct: 7 LGGLLRQNISSNGNVPVTSMLGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKV 66
Query: 76 LYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRRS 125
+ D E+GRSRG+GFV ++ + A+ ++G EL GR +RV+ A R S
Sbjct: 67 IVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRPS 116
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYG 68
A + ++GR+ +G+ ++VN++ P + F +FVG+LS +TTE + AF +G
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAFAPFG 119
Query: 69 NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+ ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R + A
Sbjct: 120 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYG 68
A + ++GR+ +G+ ++VN++ P + F +FVG+LS +TTE + AF +G
Sbjct: 57 AALAAMNGRKIMGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAFAPFG 115
Query: 69 NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+ ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R + A
Sbjct: 116 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 167
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 195 (73.7 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 36/118 (30%), Positives = 76/118 (64%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D N ++ L+G++ I+++N++ + + ++ F LFVG+L+ +V E+L AF+
Sbjct: 127 DANIALQTLNGKQIENNIVKINWAFQSQQSS---SDDTFNLFVGDLNVNVDDETLRNAFK 183
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
++ + + V++D ++G SRGYGFV ++++ + + A++S+ G +L GR +R++ A R
Sbjct: 184 DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 117 (46.2 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/85 (30%), Positives = 50/85 (58%)
Query: 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
+D L+VGNL ++T + L Q FQ G + +++ D ++ ++ Y FV Y + A
Sbjct: 73 SDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIA 131
Query: 102 LESLNGVELEGRAMRVSLA-QGRRS 125
L++LNG ++E ++++ A Q ++S
Sbjct: 132 LQTLNGKQIENNIVKINWAFQSQQS 156
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 192 (72.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 192 (72.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 192 (72.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 60 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 118
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 119 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 88 (36.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
++ G ++ +T + + Q F +G ++ RV + +GY FV +ST A+ S+
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 260
Query: 106 NGVELEGRAMR 116
NG +EG ++
Sbjct: 261 NGTTIEGHVVK 271
Score = 40 (19.1 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 8 NAVIENLDGREYLGRILRVNFSDKPKPKLP 37
NA++ ++ G+ GR +R N++ + KP P
Sbjct: 153 NAIV-HMGGQWLGGRQIRTNWATR-KPPAP 180
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 192 (72.6 bits), Expect = 1.2e-14, P = 1.2e-14
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 60 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 118
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 119 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 88 (36.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
++ G ++ +T + + Q F +G ++ RV + +GY FV +ST A+ S+
Sbjct: 207 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 260
Query: 106 NGVELEGRAMR 116
NG +EG ++
Sbjct: 261 NGTTIEGHVVK 271
Score = 40 (19.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 8 NAVIENLDGREYLGRILRVNFSDKPKPKLP 37
NA++ ++ G+ GR +R N++ + KP P
Sbjct: 153 NAIV-HMGGQWLGGRQIRTNWATR-KPPAP 180
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 76 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 134
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 135 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 189
Score = 88 (36.0 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
++ G ++ +T + + Q F +G ++ RV + +GY FV +ST A+ S+
Sbjct: 223 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 276
Query: 106 NGVELEGRAMR 116
NG +EG ++
Sbjct: 277 NGTTIEGHVVK 287
Score = 40 (19.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 8 NAVIENLDGREYLGRILRVNFSDKPKPKLP 37
NA++ ++ G+ GR +R N++ + KP P
Sbjct: 169 NAIV-HMGGQWLGGRQIRTNWATR-KPPAP 196
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
Score = 88 (36.0 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
++ G ++ +T + + Q F +G ++ RV + +GY FV +ST A+ S+
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 277
Query: 106 NGVELEGRAMR 116
NG +EG ++
Sbjct: 278 NGTTIEGHVVK 288
Score = 40 (19.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 8 NAVIENLDGREYLGRILRVNFSDKPKPKLP 37
NA++ ++ G+ GR +R N++ + KP P
Sbjct: 170 NAIV-HMGGQWLGGRQIRTNWATR-KPPAP 197
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
Score = 88 (36.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
++ G ++ +T + + Q F +G ++ RV + +GY FV +ST A+ S+
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 277
Query: 106 NGVELEGRAMR 116
NG +EG ++
Sbjct: 278 NGTTIEGHVVK 288
Score = 40 (19.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 8 NAVIENLDGREYLGRILRVNFSDKPKPKLP 37
NA++ ++ G+ GR +R N++ + KP P
Sbjct: 170 NAIV-HMGGQWLGGRQIRTNWATR-KPPAP 197
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
Score = 88 (36.0 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
++ G ++ +T + + Q F +G ++ RV + +GY FV +ST A+ S+
Sbjct: 224 VYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSV 277
Query: 106 NGVELEGRAMR 116
NG +EG ++
Sbjct: 278 NGTTIEGHVVK 288
Score = 40 (19.1 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 8 NAVIENLDGREYLGRILRVNFSDKPKPKLP 37
NA++ ++ G+ GR +R N++ + KP P
Sbjct: 170 NAIV-HMGGQWLGGRQIRTNWATR-KPPAP 197
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 192 (72.6 bits), Expect = 1.3e-14, P = 1.3e-14
Identities = 41/115 (35%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF
Sbjct: 77 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFA 135
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 136 PFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 190 (71.9 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 39/117 (33%), Positives = 71/117 (60%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYG 68
A + ++GR+ LG+ ++VN++ P + F +FVG+LS ++T+ + AF +G
Sbjct: 63 AALAAMNGRKILGKDMKVNWASTPSSQKK-DTSNHFHVFVGDLSPEISTDDVRAAFAPFG 121
Query: 69 NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRRS 125
+ ARV+ D +G+S+GYGF+ + K + E+A++ +NG L GR +R + A + S
Sbjct: 122 KISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPS 178
>TAIR|locus:2077427 [details] [associations]
symbol:AT3G08000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC013483 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q14103 UniGene:At.40270 UniGene:At.28103
EMBL:BT012118 EMBL:BT012373 IPI:IPI00520412 RefSeq:NP_187457.1
ProteinModelPortal:Q9SFB4 SMR:Q9SFB4 EnsemblPlants:AT3G08000.1
GeneID:819991 KEGG:ath:AT3G08000 TAIR:At3g08000 InParanoid:Q9SFB4
OMA:FCTSSSA PhylomeDB:Q9SFB4 ProtClustDB:CLSN2915579
Genevestigator:Q9SFB4 Uniprot:Q9SFB4
Length = 143
Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 37/84 (44%), Positives = 53/84 (63%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A KLF+G LSWSV +SL AF +G V R+ YD SGRSRG+GFV ++ + +
Sbjct: 37 ASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEEGDAL 96
Query: 100 TALESLNGVELEGRAMRVSLAQGR 123
+A ++++G L GR +R+S A R
Sbjct: 97 SAKDAMDGKGLLGRPLRISFALER 120
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 188 (71.2 bits), Expect = 3.2e-14, P = 3.2e-14
Identities = 39/112 (34%), Positives = 67/112 (59%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYG 68
A + ++GR+ +G+ ++VN++ P + F +FVG+LS +TTE + AF +G
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAFAPFG 119
Query: 69 NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+ ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R + A
Sbjct: 120 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 188 (71.2 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 40/115 (34%), Positives = 67/115 (58%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D A + ++GR+ LG+ ++VN++ P + F +FVG+LS +TT+ + AF
Sbjct: 78 DAAAALAAMNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTDDIRAAFA 136
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + ARV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 137 PFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 191
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 190 (71.9 bits), Expect = 3.6e-14, P = 3.6e-14
Identities = 44/110 (40%), Positives = 66/110 (60%)
Query: 11 IENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNV 70
++ L+GR +RVN++ + F +FVG+LS V E L QAF +G+V
Sbjct: 149 MQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAFGSV 208
Query: 71 VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
ARV++D ++GRSRGYGFV + +A+ E AL S++G L RA+R + A
Sbjct: 209 SEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWA 258
Score = 106 (42.4 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 24/76 (31%), Positives = 41/76 (53%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE-SGRSRGYGFVCYSTKAEMETALES 104
L+VG L VT + L Q F+ G+V+ +++ D + + YGFV + E A+++
Sbjct: 92 LYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAAERAMQT 151
Query: 105 LNGVELEGRAMRVSLA 120
LNG + +RV+ A
Sbjct: 152 LNGRRIHQSEIRVNWA 167
Score = 93 (37.8 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 23/77 (29%), Positives = 37/77 (48%)
Query: 47 FVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 106
+VGNL+ T + FQ +G V+ R+ D RG+ F+ T +A+ LN
Sbjct: 311 YVGNLTPYTTQNDIVPLFQNFGYVIETRMQAD------RGFAFIKMDTHENAASAICQLN 364
Query: 107 GVELEGRAMRVSLAQGR 123
G + GR ++ S + R
Sbjct: 365 GYNVNGRPLKCSWGKDR 381
Score = 43 (20.2 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 6 DCNAVIENLDGREYLG-RILRVNFSD-KPKPKL 36
D + ++DG E+LG R +R N+++ K +P +
Sbjct: 235 DAEKALTSMDG-EWLGSRAIRCNWANQKGQPSI 266
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 188 (71.2 bits), Expect = 5.9e-14, P = 5.9e-14
Identities = 44/111 (39%), Positives = 69/111 (62%)
Query: 11 IENLDGREYLGRILRVNFSDKPKPKLPLYAETD-FKLFVGNLSWSVTTESLTQAFQEYGN 69
++ L+GR +RVN++ + ++ F +FVG+LS V E LTQAF +G+
Sbjct: 142 MQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFGS 201
Query: 70 VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
V ARV++D ++GRSRGYGFV + +++ E AL S++G L RA+R + A
Sbjct: 202 VSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWA 252
Score = 104 (41.7 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 24/75 (32%), Positives = 41/75 (54%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG L VT + L Q F+ G+V +++ D ++ + YGFV Y + A+++L
Sbjct: 87 LYVGGLDARVTEDVLRQIFETTGHVQNVKIIPD-KNAKGYNYGFVEYDDPGAADRAMQTL 145
Query: 106 NGVELEGRAMRVSLA 120
NG + +RV+ A
Sbjct: 146 NGRRVHQSEIRVNWA 160
Score = 90 (36.7 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 26/89 (29%), Positives = 40/89 (44%)
Query: 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 96
P Y T +VGNL+ T + FQ +G VV +R D RG+ F+ +
Sbjct: 298 PAYQTT---CYVGNLTPYTTANDVVPLFQNFGYVVESRFQAD------RGFAFIKMDSHE 348
Query: 97 EMETALESLNGVELEGRAMRVSLAQGRRS 125
A+ LNG + GR ++ S + + S
Sbjct: 349 NAAQAICGLNGYNVNGRPLKCSWGKDKNS 377
Score = 44 (20.5 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 6 DCNAVIENLDGREYLG-RILRVNFSD-KPKPKL 36
D + ++DG E+LG R +R N+++ K +P +
Sbjct: 229 DAEKALSSMDG-EWLGSRAIRCNWANQKGQPSI 260
>POMBASE|SPAC140.02 [details] [associations]
symbol:gar2 "nucleolar protein required for rRNA
processing" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=IMP]
[GO:0007000 "nucleolus organization" evidence=IMP] [GO:0042254
"ribosome biogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC140.02 EMBL:CU329670 GO:GO:0005730
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006364 eggNOG:COG0724 GO:GO:0007000
GO:GO:0005732 EMBL:Z48166 PIR:S55785 RefSeq:NP_593531.1
ProteinModelPortal:P41891 STRING:P41891 PRIDE:P41891
EnsemblFungi:SPAC140.02.1 GeneID:2542869 KEGG:spo:SPAC140.02
KO:K11294 OMA:VITDRES OrthoDB:EOG422DTZ NextBio:20803909
Uniprot:P41891
Length = 500
Score = 188 (71.2 bits), Expect = 6.5e-14, P = 6.5e-14
Identities = 37/79 (46%), Positives = 55/79 (69%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG LSW+V + L Q F+EYG +VGARV+ DG+SGRS+GYG+V + T + A+ +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKAAVAA- 323
Query: 106 NGV-ELEGRAMRVSLAQGR 123
NG E++GR + + L+ R
Sbjct: 324 NGTKEIDGRMVNLDLSNPR 342
Score = 126 (49.4 bits), Expect = 3.2e-07, P = 3.2e-07
Identities = 40/134 (29%), Positives = 69/134 (51%)
Query: 3 TVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL-YAET---DF---------KLFVG 49
T E A + +E GR++ ++ S+ P+P P YA+ +F +FVG
Sbjct: 313 TPEAAKAAVAANGTKEIDGRMVNLDLSN-PRPANPQPYAQQRAGNFGDQLSEPSDTVFVG 371
Query: 50 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109
NLS++ T + L+ AF G++ R+ D +SGR +G+G+V +S + +E +NG
Sbjct: 372 NLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHF 430
Query: 110 LEGRAMRVSLAQGR 123
+ GR R+ + R
Sbjct: 431 IAGRPCRLDFSTPR 444
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 185 (70.2 bits), Expect = 6.7e-14, P = 6.7e-14
Identities = 38/107 (35%), Positives = 65/107 (60%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA 73
++GR+ +G+ ++VN++ P + F +FVG+LS +TTE + AF +G + A
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 124
Query: 74 RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
RV+ D +G+S+GYGFV + K + E A++ + G L GR +R + A
Sbjct: 125 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 171
>TAIR|locus:2200975 [details] [associations]
symbol:AT1G01080 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0006655
"phosphatidylglycerol biosynthetic process" evidence=RCA]
[GO:0010103 "stomatal complex morphogenesis" evidence=RCA]
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0005634 GO:GO:0009570 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0009941 GO:GO:0003676 IPI:IPI00657321
RefSeq:NP_001030925.1 UniGene:At.26684 ProteinModelPortal:F4HQH8
SMR:F4HQH8 PRIDE:F4HQH8 EnsemblPlants:AT1G01080.2 GeneID:839463
KEGG:ath:AT1G01080 OMA:MRVRYSV PhylomeDB:F4HQH8 Uniprot:F4HQH8
Length = 294
Score = 181 (68.8 bits), Expect = 7.0e-14, P = 7.0e-14
Identities = 46/135 (34%), Positives = 73/135 (54%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFS-D-------KPK-----PKLPLYAETDFKLF 47
M ++ I +LDG E GR +RV +S D P+ PK L E+ K++
Sbjct: 157 MGSINSAKIAIASLDGTEVGGREMRVRYSVDMNPGTRRNPEVLNSTPKKILMYESQHKVY 216
Query: 48 VGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 107
VGNL W + L F ++G +V RVL+D ++GR+R + F+ +++ E + AL S NG
Sbjct: 217 VGNLPWFTQPDGLRNHFSKFGTIVSTRVLHDRKTGRNRVFAFLSFTSGEERDAAL-SFNG 275
Query: 108 VELEGRAMRVSLAQG 122
+ EGR R+ + +G
Sbjct: 276 TQYEGR--RIIVREG 288
Score = 110 (43.8 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 26/74 (35%), Positives = 41/74 (55%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLY-DGESGRSRGYGFVCYSTKAEMETALE 103
+L+V N+ S L FQ +G V+ V+ + ++G SRG G+V + + A+
Sbjct: 109 ELYVCNIPRSYDIAQLLDMFQPFGTVISVEVVSRNPQTGESRGSGYVTMGSINSAKIAIA 168
Query: 104 SLNGVELEGRAMRV 117
SL+G E+ GR MRV
Sbjct: 169 SLDGTEVGGREMRV 182
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 184 (69.8 bits), Expect = 9.6e-14, P = 9.6e-14
Identities = 38/112 (33%), Positives = 67/112 (59%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYG 68
A + ++GR+ +G+ ++VN++ P + F +FVG+LS +TT+ + AF +G
Sbjct: 62 ASLAAMNGRKIMGKEVKVNWATSPSSQKK-DTSNHFHVFVGDLSPEITTDDIRAAFAPFG 120
Query: 69 NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+ ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R + A
Sbjct: 121 RISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 172
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 30/77 (38%), Positives = 54/77 (70%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K++VG+LS+ VT + L F +YG + A+++ D E+GRS+G+ F+ Y T+ + A+
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 105 LNGVELEGRAMRVSLAQ 121
NG++L+GR +RV++A+
Sbjct: 79 ANGIDLQGRKIRVNIAR 95
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 30/77 (38%), Positives = 54/77 (70%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K++VG+LS+ VT + L F +YG + A+++ D E+GRS+G+ F+ Y T+ + A+
Sbjct: 19 KIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAVSK 78
Query: 105 LNGVELEGRAMRVSLAQ 121
NG++L+GR +RV++A+
Sbjct: 79 ANGIDLQGRKIRVNIAR 95
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 35/91 (38%), Positives = 56/91 (61%)
Query: 33 KPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 92
K K E LFVG LSW++ L + F+ G V+GARV+ + +G+SRGYG+V +
Sbjct: 157 KSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDF 216
Query: 93 STKAEMETALESLNGVELEGRAMRVSLAQGR 123
+K+ E ALE + G E++GR + + ++ G+
Sbjct: 217 ESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
Score = 160 (61.4 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 39/124 (31%), Positives = 68/124 (54%)
Query: 11 IENLDGREYLGRILRVNFSD-KP------KPKLPLYAETDFK----LFVGNLSWSVTTES 59
+E + G+E GR + ++ S KP + Y ++ LF+GNLS++ ++
Sbjct: 226 LEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L F EYGNV+ RV ++ + +G+G+V +S+ E + ALE++NG +EGR R+
Sbjct: 286 LFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDF 345
Query: 120 AQGR 123
+ R
Sbjct: 346 STPR 349
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 184 (69.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 35/91 (38%), Positives = 56/91 (61%)
Query: 33 KPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 92
K K E LFVG LSW++ L + F+ G V+GARV+ + +G+SRGYG+V +
Sbjct: 157 KSKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDF 216
Query: 93 STKAEMETALESLNGVELEGRAMRVSLAQGR 123
+K+ E ALE + G E++GR + + ++ G+
Sbjct: 217 ESKSAAEKALEEMQGKEIDGRPINLDMSTGK 247
Score = 160 (61.4 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 39/124 (31%), Positives = 68/124 (54%)
Query: 11 IENLDGREYLGRILRVNFSD-KP------KPKLPLYAETDFK----LFVGNLSWSVTTES 59
+E + G+E GR + ++ S KP + Y ++ LF+GNLS++ ++
Sbjct: 226 LEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L F EYGNV+ RV ++ + +G+G+V +S+ E + ALE++NG +EGR R+
Sbjct: 286 LFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDF 345
Query: 120 AQGR 123
+ R
Sbjct: 346 STPR 349
>TAIR|locus:2119505 [details] [associations]
symbol:AT4G13860 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:P19339 HOGENOM:HOG000276232
UniGene:At.33330 EMBL:BT014844 IPI:IPI00523584 RefSeq:NP_193122.2
ProteinModelPortal:Q6ID29 SMR:Q6ID29 PRIDE:Q6ID29
EnsemblPlants:AT4G13860.1 GeneID:827020 KEGG:ath:AT4G13860
TAIR:At4g13860 InParanoid:Q6ID29 OMA:KIEEMFL PhylomeDB:Q6ID29
Genevestigator:Q6ID29 Uniprot:Q6ID29
Length = 87
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 36/75 (48%), Positives = 51/75 (68%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+++VGNLS + T + L +AF YGNVV A V+ D + RSRG+GFV YS+ +E E A+
Sbjct: 4 RVYVGNLSPTTTDDMLREAFSGYGNVVDAIVMRDRYTDRSRGFGFVTYSSHSEAEAAVSG 63
Query: 105 LNGVELEGRAMRVSL 119
++G EL GR + V L
Sbjct: 64 MDGKELNGRRVSVKL 78
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
F ++VGN + T + L F + GNV R++ D E+GR RG+ FV ++ +A + A++
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 104 SLNGVELEGRAMRVSLAQGRRS 125
NGV+ GRA+RV+LAQ R +
Sbjct: 64 QFNGVDFNGRALRVNLAQNRNN 85
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 33/82 (40%), Positives = 52/82 (63%)
Query: 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
F ++VGN + T + L F + GNV R++ D E+GR RG+ FV ++ +A + A++
Sbjct: 4 FSVYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAAAQRAVD 63
Query: 104 SLNGVELEGRAMRVSLAQGRRS 125
NGV+ GRA+RV+LAQ R +
Sbjct: 64 QFNGVDFNGRALRVNLAQNRNN 85
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 42/122 (34%), Positives = 70/122 (57%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET--------D-FKLFVGNLSWSVTTE 58
A + ++GR+ +G+ ++VN++ P K + T D F +FVG+LS +TTE
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118
+ AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 119 LA 120
A
Sbjct: 181 WA 182
>UNIPROTKB|Q3AF33 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VGNL W + +E L + E+G V+GARV+ + +GRSRGYGF+ + + E + L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDE-DAEKFMTGL 63
Query: 106 NGVELEGRAMRVSLAQGR 123
NG E+EGR + VS A+ R
Sbjct: 64 NGKEVEGRQLVVSEARER 81
>TIGR_CMR|CHY_0389 [details] [associations]
symbol:CHY_0389 "RNA-binding protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 HOGENOM:HOG000276232 OMA:KRVHIPT RefSeq:YP_359251.1
ProteinModelPortal:Q3AF33 STRING:Q3AF33 GeneID:3728526
KEGG:chy:CHY_0389 PATRIC:21273941
BioCyc:CHYD246194:GJCN-390-MONOMER Uniprot:Q3AF33
Length = 83
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/78 (44%), Positives = 51/78 (65%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VGNL W + +E L + E+G V+GARV+ + +GRSRGYGF+ + + E + L
Sbjct: 5 LYVGNLPWKIRSEQLQEIASEFGEVIGARVILEKSTGRSRGYGFIEVRDE-DAEKFMTGL 63
Query: 106 NGVELEGRAMRVSLAQGR 123
NG E+EGR + VS A+ R
Sbjct: 64 NGKEVEGRQLVVSEARER 81
>TAIR|locus:2019622 [details] [associations]
symbol:GR-RBP5 "AT1G74230" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0005524
"ATP binding" evidence=IDA] [GO:0005507 "copper ion binding"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005739 GO:GO:0005524
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005507 eggNOG:COG0724
EMBL:AC020579 HSSP:Q14103 KO:K12741 EMBL:BT002037 EMBL:BT006315
IPI:IPI00516639 PIR:F96770 RefSeq:NP_177563.1 UniGene:At.18152
ProteinModelPortal:Q9C909 SMR:Q9C909 PaxDb:Q9C909 PRIDE:Q9C909
EnsemblPlants:AT1G74230.1 GeneID:843763 KEGG:ath:AT1G74230
GeneFarm:3954 TAIR:At1g74230 InParanoid:Q9C909 OMA:TERGSGF
ProtClustDB:CLSN2914559 Genevestigator:Q9C909 Uniprot:Q9C909
Length = 289
Score = 173 (66.0 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 35/81 (43%), Positives = 54/81 (66%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG +S+S L +AF +YG VV A+++ D E+GRSRG+ FV +++ E A++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
L+G +L GR +RV+ A R S
Sbjct: 94 LDGQDLHGRRIRVNYATERGS 114
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 34/83 (40%), Positives = 53/83 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLF+G LS+ T +SL +AF +YG + V+ D E+ RSRG+GFV + + + A+ +
Sbjct: 24 KLFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAA 83
Query: 105 LNGVELEGRAMRVSLA--QGRRS 125
+NG +++GR +RV A G RS
Sbjct: 84 MNGKQVDGRMIRVDEAGKSGGRS 106
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 177 (67.4 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 39/111 (35%), Positives = 67/111 (60%)
Query: 11 IENLDGREYLGRILRVNFSDKP-KPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGN 69
++ ++ R L R ++VN++ +P + + + F +FVG+LS V + L +AFQ +G+
Sbjct: 101 LQTMNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGD 160
Query: 70 VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
V A+V+ D + +S+GYGFV Y + E E A+E +NG L R +R + A
Sbjct: 161 VSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWA 211
Score = 104 (41.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 25/75 (33%), Positives = 42/75 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VGNL +VT + + F + G+V +V++DG + Y FV +S + AL+++
Sbjct: 48 LYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDP---YAFVEFSDHGQASQALQTM 104
Query: 106 NGVELEGRAMRVSLA 120
N L R M+V+ A
Sbjct: 105 NKRLLLDREMKVNWA 119
Score = 100 (40.3 bits), Expect = 0.00015, P = 0.00015
Identities = 33/130 (25%), Positives = 64/130 (49%)
Query: 5 EDCNAVIENLDGREYLGR-ILRVNFS-----DKPKPKL-------PLYAET---DFKLFV 48
E+ IE ++G ++LGR +R N++ D+ KP +Y +T + ++V
Sbjct: 187 EEAERAIEQMNG-QWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYV 245
Query: 49 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108
GN++ S+T + + Q F +G + R+ + +GY FV + K A+ +N
Sbjct: 246 GNIA-SLTEDEIRQGFASFGRITEVRIF------KMQGYAFVKFDNKDAAAKAIVQMNNQ 298
Query: 109 ELEGRAMRVS 118
++ G+ +R S
Sbjct: 299 DVGGQLVRCS 308
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 177 (67.4 bits), Expect = 6.7e-13, P = 6.7e-13
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG LSWS+ E L + F+ G V+GARV+Y+ + RSRGYG+V + K+ E A++ +
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 106 NGVELEGRAMRVSLAQGR 123
G E++GR + ++ +
Sbjct: 230 QGKEIDGRPINCDMSTSK 247
Score = 134 (52.2 bits), Expect = 3.2e-08, P = 3.2e-08
Identities = 32/121 (26%), Positives = 66/121 (54%)
Query: 11 IENLDGREYLGRILRVNFS-DKP---KPKLPLYAETDFK----LFVGNLSWSVTTESLTQ 62
I+ + G+E GR + + S KP + + +T + LF+GNLS++ +++ +
Sbjct: 226 IQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFE 285
Query: 63 AFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122
F ++G VV R+ E+ + +G+G+V +S + + AL++L G ++ R +R+ +
Sbjct: 286 LFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP 345
Query: 123 R 123
R
Sbjct: 346 R 346
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVG L++ T ESL Q F +YG V V+ D ES RSRG+GFV + + + A+ +
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
+NG ++GR +RV A G+ S
Sbjct: 67 MNGKSVDGRQIRVDQA-GKSS 86
>TAIR|locus:2122368 [details] [associations]
symbol:AT4G09040 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009570 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BT010910 EMBL:AK175121
EMBL:AK175672 EMBL:AK175723 EMBL:AK176316 EMBL:AK220985
IPI:IPI00527701 RefSeq:NP_192643.2 UniGene:At.33716
ProteinModelPortal:Q6NPL0 SMR:Q6NPL0 STRING:Q6NPL0 PRIDE:Q6NPL0
EnsemblPlants:AT4G09040.1 GeneID:826483 KEGG:ath:AT4G09040
TAIR:At4g09040 InParanoid:Q6NPL0 OMA:PTFNLFV PhylomeDB:Q6NPL0
ProtClustDB:CLSN2716082 Genevestigator:Q6NPL0 Uniprot:Q6NPL0
Length = 304
Score = 172 (65.6 bits), Expect = 9.2e-13, P = 9.2e-13
Identities = 42/124 (33%), Positives = 66/124 (53%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD-----FKLFVGNLSWSV 55
M++ E+ +++L+ EY GR L+V+++ K K ET F LFV NL++
Sbjct: 141 MASPEEAATALKSLESCEYEGRRLKVDYAKTKKKKTYAPRETPSPVPTFNLFVANLAFEA 200
Query: 56 TTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114
+ L + F + GNVV V++ RS GYGFV + TK + E AL G + GR
Sbjct: 201 RAKHLKEFFDADTGNVVSTEVIFHENPRRSSGYGFVSFKTKKQAEAALIEFQGKDFLGRP 260
Query: 115 MRVS 118
+R++
Sbjct: 261 IRLA 264
Score = 120 (47.3 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 28/102 (27%), Positives = 53/102 (51%)
Query: 23 ILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG 82
+L + S P++ + +L N+ W+ T E + F++YG+V+ + +
Sbjct: 73 VLESSSSSSSAPEVVEEEISKTRLIAQNVPWTSTPEDIRSLFEKYGSVIDIEMSMHKKE- 131
Query: 83 RSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
R+RG F+ ++ E TAL+SL E EGR ++V A+ ++
Sbjct: 132 RNRGLVFIEMASPEEAATALKSLESCEYEGRRLKVDYAKTKK 173
>ASPGD|ASPL0000040642 [details] [associations]
symbol:AN2989 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 HOGENOM:HOG000276232 OMA:ISEMDGK
ProteinModelPortal:C8VIY5 EnsemblFungi:CADANIAT00010091
Uniprot:C8VIY5
Length = 128
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 31/79 (39%), Positives = 50/79 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLF+G L+W T + L + F YG + A V+ D ++ RSRG+GFV ++++ E + A+ +
Sbjct: 3 KLFIGGLAWHTTDDVLREGFSRYGTIEEAVVVKDRDTNRSRGFGFVRFASEPEADAAMGA 62
Query: 105 LNGVELEGRAMRVSLAQGR 123
+N E +GR +RV A R
Sbjct: 63 MNNQEFDGRIIRVDKASER 81
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 33/81 (40%), Positives = 53/81 (65%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLF+G LS+ T + L++AF + G VV A+++ D S RS+G+GFV +++ E + AL
Sbjct: 35 KLFIGGLSFCTTEQGLSEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALME 94
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
NG +L GR + V A+ ++S
Sbjct: 95 FNGQQLNGRTIFVDYAKAKQS 115
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 173 (66.0 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 42/122 (34%), Positives = 70/122 (57%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET--------D-FKLFVGNLSWSVTTE 58
A + ++GR+ +G+ ++VN++ P K + T D F +FVG+LS +TTE
Sbjct: 57 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 116
Query: 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118
+ AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R +
Sbjct: 117 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 176
Query: 119 LA 120
A
Sbjct: 177 WA 178
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 173 (66.0 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 42/122 (34%), Positives = 70/122 (57%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET--------D-FKLFVGNLSWSVTTE 58
A + ++GR+ +G+ ++VN++ P K + T D F +FVG+LS +TTE
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118
+ AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 119 LA 120
A
Sbjct: 181 WA 182
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 173 (66.0 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 42/122 (34%), Positives = 70/122 (57%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET--------D-FKLFVGNLSWSVTTE 58
A + ++GR+ +G+ ++VN++ P K + T D F +FVG+LS +TTE
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118
+ AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 119 LA 120
A
Sbjct: 181 WA 182
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 173 (66.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 42/122 (34%), Positives = 70/122 (57%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET--------D-FKLFVGNLSWSVTTE 58
A + ++GR+ +G+ ++VN++ P K + T D F +FVG+LS +TTE
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118
+ AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 119 LA 120
A
Sbjct: 181 WA 182
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 173 (66.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 42/122 (34%), Positives = 70/122 (57%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET--------D-FKLFVGNLSWSVTTE 58
A + ++GR+ +G+ ++VN++ P K + T D F +FVG+LS +TTE
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118
+ AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 119 LA 120
A
Sbjct: 181 WA 182
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 173 (66.0 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 42/122 (34%), Positives = 70/122 (57%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKP-KLPLYAET--------D-FKLFVGNLSWSVTTE 58
A + ++GR+ +G+ ++VN++ P K + T D F +FVG+LS +TTE
Sbjct: 61 AALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118
+ AF +G + ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R +
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 119 LA 120
A
Sbjct: 181 WA 182
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 173 (66.0 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 38/110 (34%), Positives = 66/110 (60%)
Query: 11 IENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNV 70
I +L+GR G+ ++VN++ + + F +FVG+LS VT +L Q+F + +
Sbjct: 113 ILSLNGRHLFGQPIKVNWAYATGQRED--TSSHFNIFVGDLSPEVTDATLYQSFSVFSSC 170
Query: 71 VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
ARV++D ++GRSRG+GFV + + + +TA+ +NG L R +R + A
Sbjct: 171 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWA 220
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 32/76 (42%), Positives = 47/76 (61%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLF+G LS+ T +SL AF +YG + V + E+ RSRG+GFV + + + ALE
Sbjct: 6 KLFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEG 65
Query: 105 LNGVELEGRAMRVSLA 120
+NG ++GR +RV A
Sbjct: 66 MNGKSVDGRTIRVDEA 81
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 172 (65.6 bits), Expect = 3.8e-12, P = 3.8e-12
Identities = 33/78 (42%), Positives = 54/78 (69%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
LFVGNLSW+VT E L Q F+++G + AR++ + ++GRSRG+G+V ++ A+ A E++
Sbjct: 279 LFVGNLSWNVTEEWLHQEFEQFGEL-SARIMTERDTGRSRGFGYVEFTNAADAAKAYEAM 337
Query: 106 NGVELEGRAMRVSLAQGR 123
E++GR + + A GR
Sbjct: 338 KEHEIDGRKINLDYATGR 355
Score = 164 (62.8 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 38/97 (39%), Positives = 56/97 (57%)
Query: 27 NFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRG 86
+F D+ P E+D LFVGNL +S +S+ + F GNV+G R+ D ESGR +G
Sbjct: 374 SFGDQTSP------ESD-TLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKG 426
Query: 87 YGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
+G+V YS+ E A L G E++GR +R+ + R
Sbjct: 427 FGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFSTPR 463
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 163 (62.4 bits), Expect = 3.9e-12, P = 3.9e-12
Identities = 33/81 (40%), Positives = 49/81 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A F ++VGN+ + T E + F G+V R++YD E+GR RG+ FV +S +A +
Sbjct: 2 ASQGFSVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQ 61
Query: 100 TALESLNGVELEGRAMRVSLA 120
A+E LNGV GR +RV+ A
Sbjct: 62 RAVEQLNGVAFNGRNLRVNYA 82
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 167 (63.8 bits), Expect = 4.8e-12, P = 4.8e-12
Identities = 30/77 (38%), Positives = 51/77 (66%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+S+ V+ +++ F + GNV+ ++++D E+G+ +GYGF+ + E A+ +L
Sbjct: 20 VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79
Query: 106 NGVELEGRAMRVSLAQG 122
NG EL GR +RV A G
Sbjct: 80 NGYELSGRILRVDSAAG 96
>UNIPROTKB|E2R1C1 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AAEX03014924 EMBL:AAEX03014925
Ensembl:ENSCAFT00000024677 Uniprot:E2R1C1
Length = 435
Score = 169 (64.5 bits), Expect = 5.6e-12, P = 5.6e-12
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 22 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 81
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 82 NGREFSGRALRVDNAASEKN 101
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 169 (64.5 bits), Expect = 7.0e-12, P = 7.0e-12
Identities = 34/78 (43%), Positives = 49/78 (62%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
LFVGNLSW+V L + F+ G V ARV+ D ESGRS+G+G+V ++T E E A
Sbjct: 241 LFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEAEKAHGEK 300
Query: 106 NGVELEGRAMRVSLAQGR 123
G ++GR ++V + G+
Sbjct: 301 QGAFIDGREIKVDFSTGK 318
Score = 132 (51.5 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 100
E+D LFVGNL + +S+ F E V R+ + ESGR +G+G+V +++ + ++
Sbjct: 340 ESD-TLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKS 398
Query: 101 ALESLNGVELEGRAMRVSLAQGR 123
A E LNG + GR R+ + R
Sbjct: 399 AFEQLNGQSINGRNCRLDYSTPR 421
>UNIPROTKB|G3XAP0 [details] [associations]
symbol:RBM23 "RNA binding motif protein 23, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 EMBL:AL135998 UniGene:Hs.4997
HGNC:HGNC:20155 ChiTaRS:RBM23 TIGRFAMs:TIGR01622
ProteinModelPortal:G3XAP0 SMR:G3XAP0 Ensembl:ENST00000542016
ArrayExpress:G3XAP0 Bgee:G3XAP0 Uniprot:G3XAP0
Length = 269
Score = 162 (62.1 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 39/111 (35%), Positives = 59/111 (53%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLPLYAET-------DFKLFVGNLSWSVTTESLTQAFQE 66
L G+ LG + V S K +L A +L+VG+L +++T + L F+
Sbjct: 56 LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP 115
Query: 67 YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117
+G + ++ D ++GRS+GYGF+ +S ALE LNG EL GR MRV
Sbjct: 116 FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 166
>FB|FBgn0031883 [details] [associations]
symbol:CG11266 species:7227 "Drosophila melanogaster"
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014134
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 GO:GO:0000381 HSSP:Q60900
TIGRFAMs:TIGR01622 KO:K13091 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 UniGene:Dm.7322 GeneID:33989
KEGG:dme:Dmel_CG11266 FlyBase:FBgn0031883 ChiTaRS:CG11266
GenomeRNAi:33989 NextBio:786302 EMBL:AY051860 RefSeq:NP_609095.1
RefSeq:NP_723243.1 SMR:Q9VM49 IntAct:Q9VM49 MINT:MINT-745605
STRING:Q9VM49 EnsemblMetazoa:FBtr0089636 EnsemblMetazoa:FBtr0089640
UCSC:CG11266-RA InParanoid:Q9VM49 Uniprot:Q9VM49
Length = 594
Score = 170 (64.9 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 40/117 (34%), Positives = 66/117 (56%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKPKL----PLY---AETD-FKLFVGNLSWSVTTESL 60
A+ L G+ LG + V + K +L P + + T +L+VG+L +++T + L
Sbjct: 292 ALALGLSGQRLLGVPIMVQHTQAEKNRLQNAAPAFQPKSHTGPMRLYVGSLHFNITEDML 351
Query: 61 TQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117
F+ +G + +++ D E+GRS+GYGF+ Y + + ALE LNG EL GR M+V
Sbjct: 352 RGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFELAGRLMKV 408
>UNIPROTKB|Q60A61 [details] [associations]
symbol:MCA1010 "RNA-binding protein" species:243233
"Methylococcus capsulatus str. Bath" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE017282
GenomeReviews:AE017282_GR HOGENOM:HOG000276232 RefSeq:YP_113486.1
ProteinModelPortal:Q60A61 GeneID:3102652 KEGG:mca:MCA1010
PATRIC:22605822 OMA:LAFHSTE Uniprot:Q60A61
Length = 95
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/77 (42%), Positives = 49/77 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KL+VGNL++ V L + F YG V A+V+ D +GRSRG+GFV + E + A+
Sbjct: 4 KLYVGNLNYRVGDADLERTFAAYGTVKSAQVVMDRATGRSRGFGFVEMGSDQEAQAAIAG 63
Query: 105 LNGVELEGRAMRVSLAQ 121
LNG E++GR + V+ A+
Sbjct: 64 LNGKEMDGRNLMVNEAR 80
>UNIPROTKB|J9P8Y3 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:METCAME EMBL:AAEX03014924
EMBL:AAEX03014925 Ensembl:ENSCAFT00000049986 Uniprot:J9P8Y3
Length = 558
Score = 169 (64.5 bits), Expect = 9.0e-12, P = 9.0e-12
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|F1SD01 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 CTD:23283 OMA:METCAME EMBL:CU407055
RefSeq:XP_001926989.1 ProteinModelPortal:F1SD01
Ensembl:ENSSSCT00000011415 GeneID:100157243 KEGG:ssc:100157243
Uniprot:F1SD01
Length = 615
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|Q9H0L4 [details] [associations]
symbol:CSTF2T "Cleavage stimulation factor subunit 2 tau
variant" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005622 "intracellular" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:CH471083
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005622
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AY130299 EMBL:AL136747 EMBL:AK222574
EMBL:AK314318 EMBL:BC028239 EMBL:AB014589 IPI:IPI00550906
RefSeq:NP_056050.1 UniGene:Hs.591358 ProteinModelPortal:Q9H0L4
SMR:Q9H0L4 IntAct:Q9H0L4 MINT:MINT-1461400 STRING:Q9H0L4
PhosphoSite:Q9H0L4 DMDM:71153234 REPRODUCTION-2DPAGE:IPI00550906
PaxDb:Q9H0L4 PeptideAtlas:Q9H0L4 PRIDE:Q9H0L4 DNASU:23283
Ensembl:ENST00000331173 GeneID:23283 KEGG:hsa:23283 UCSC:uc001jjp.3
CTD:23283 GeneCards:GC10M053455 HGNC:HGNC:17086 HPA:HPA039216
MIM:611968 neXtProt:NX_Q9H0L4 PharmGKB:PA134933809
InParanoid:Q9H0L4 OMA:METCAME PhylomeDB:Q9H0L4 GenomeRNAi:23283
NextBio:45080 Bgee:Q9H0L4 CleanEx:HS_CSTF2T Genevestigator:Q9H0L4
GermOnline:ENSG00000177613 Uniprot:Q9H0L4
Length = 616
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|E1P5S2 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005813 "centrosome" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005813 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39 IPI:IPI01015916
SMR:E1P5S2 Ensembl:ENST00000407261 UCSC:uc002xed.3 Uniprot:E1P5S2
Length = 373
Score = 165 (63.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 94 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 153
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 154 LNGFELAGRPMKV 166
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 167 (63.8 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 35/119 (29%), Positives = 69/119 (57%)
Query: 2 STVEDCNAVIENLDGREYLGRILRVNFSDKP--KPKLPLYAETDFKLFVGNLSWSVTTES 59
S + + ++ R +L + ++VN++ P +PK + + +FVG+LS + TE+
Sbjct: 53 SNYQAATTALTAMNKRLFLEKEIKVNWATSPGNQPKTDI--SSHHHIFVGDLSPEIETET 110
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118
L +AF +G + R++ D + +S+GY FV + KAE E A++++NG + R++R +
Sbjct: 111 LREAFAPFGEISNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTN 169
>RGD|1310026 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA, subunit
2, 64kDa, tau variant" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005622 "intracellular"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1310026 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG051145
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:BC169065 IPI:IPI00562807 UniGene:Rn.1661
ProteinModelPortal:B5DFH8 UCSC:RGD:1310026 Genevestigator:B5DFH8
Uniprot:B5DFH8
Length = 629
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|G3MZ78 [details] [associations]
symbol:CSTF2T "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005622 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:METCAME
EMBL:DAAA02058672 Ensembl:ENSBTAT00000024491 Uniprot:G3MZ78
Length = 632
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>MGI|MGI:1932622 [details] [associations]
symbol:Cstf2t "cleavage stimulation factor, 3' pre-RNA
subunit 2, tau" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1932622 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003723
eggNOG:COG0724 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW GeneTree:ENSGT00550000074641 CTD:23283
OMA:METCAME EMBL:AF322194 EMBL:AK173002 EMBL:AK034853 EMBL:AK050407
EMBL:AK082910 EMBL:AK084696 EMBL:BC026995 IPI:IPI00467932
RefSeq:NP_112539.2 UniGene:Mm.490369 ProteinModelPortal:Q8C7E9
SMR:Q8C7E9 STRING:Q8C7E9 PhosphoSite:Q8C7E9
REPRODUCTION-2DPAGE:IPI00467932 PaxDb:Q8C7E9 PRIDE:Q8C7E9
Ensembl:ENSMUST00000066039 GeneID:83410 KEGG:mmu:83410
UCSC:uc008her.1 InParanoid:Q8C7E9 NextBio:350538 Bgee:Q8C7E9
Genevestigator:Q8C7E9 GermOnline:ENSMUSG00000053536 Uniprot:Q8C7E9
Length = 632
Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|E9PID8 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 Pfam:PF14327 EMBL:Z83819 EMBL:Z95327
HGNC:HGNC:2484 IPI:IPI01012987 ProteinModelPortal:E9PID8 SMR:E9PID8
Ensembl:ENST00000475126 ArrayExpress:E9PID8 Bgee:E9PID8
Uniprot:E9PID8
Length = 438
Score = 166 (63.5 bits), Expect = 1.2e-11, P = 1.2e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|G3V5Z6 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23
ProteinModelPortal:G3V5Z6 SMR:G3V5Z6 Ensembl:ENST00000555209
ArrayExpress:G3V5Z6 Bgee:G3V5Z6 Uniprot:G3V5Z6
Length = 189
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + ++ D ++GRS+GYGF+ +S ALE
Sbjct: 14 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 73
Query: 105 LNGVELEGRAMRV 117
LNG EL GR MRV
Sbjct: 74 LNGFELAGRPMRV 86
>UNIPROTKB|H0YJJ3 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132780
EMBL:AL135998 HGNC:HGNC:20155 ChiTaRS:RBM23 Ensembl:ENST00000553884
Uniprot:H0YJJ3
Length = 214
Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 30/73 (41%), Positives = 47/73 (64%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + ++ D ++GRS+GYGF+ +S ALE
Sbjct: 39 RLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQ 98
Query: 105 LNGVELEGRAMRV 117
LNG EL GR MRV
Sbjct: 99 LNGFELAGRPMRV 111
>ZFIN|ZDB-GENE-050327-97 [details] [associations]
symbol:rbm39b "RNA binding motif protein 39b"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-050327-97
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
HOGENOM:HOG000236253 GeneTree:ENSGT00690000102089 EMBL:CR550308
EMBL:BC091794 IPI:IPI00498276 RefSeq:NP_001014392.1
UniGene:Dr.76447 SMR:Q58ER0 Ensembl:ENSDART00000061328
GeneID:541556 KEGG:dre:541556 CTD:541556 InParanoid:Q58ER0
OMA:NCLASST NextBio:20879330 Uniprot:Q58ER0
Length = 539
Score = 167 (63.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 30/73 (41%), Positives = 50/73 (68%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + G +++ D E+GRS+GYGF+ ++ + ALE
Sbjct: 265 RLYVGSLHFNITEDMLRGIFEPFGKIEGIQLMMDSETGRSKGYGFISFADAECAKKALEQ 324
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 325 LNGFELAGRPMKV 337
>UNIPROTKB|Q5ZLS0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
CTD:1478 HOVERGEN:HBG051145 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HOGENOM:HOG000214372 EMBL:AADN02013338
EMBL:AJ719664 IPI:IPI00603977 RefSeq:NP_001006433.1
UniGene:Gga.7714 SMR:Q5ZLS0 STRING:Q5ZLS0
Ensembl:ENSGALT00000010924 GeneID:422258 KEGG:gga:422258
NextBio:20824917 Uniprot:Q5ZLS0
Length = 475
Score = 166 (63.5 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|G3XAC6 [details] [associations]
symbol:RBM39 "RNA-binding region (RNP1, RRM) containing 2,
isoform CRA_f" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CH471077 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL357374 TIGRFAMs:TIGR01622
UniGene:Hs.282901 HGNC:HGNC:15923 ChiTaRS:RBM39
ProteinModelPortal:G3XAC6 SMR:G3XAC6 Ensembl:ENST00000338163
ArrayExpress:G3XAC6 Bgee:G3XAC6 Uniprot:G3XAC6
Length = 423
Score = 165 (63.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 159 (61.0 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 33/83 (39%), Positives = 50/83 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQG 122
A+ ++NG ++GR +RV A G
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQAGG 84
>UNIPROTKB|J9NX69 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
Pfam:PF14327 GeneTree:ENSGT00550000074641 EMBL:AAEX03026714
Ensembl:ENSCAFT00000049845 Uniprot:J9NX69
Length = 509
Score = 166 (63.5 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|F1S1L9 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CU861981 Ensembl:ENSSSCT00000013653 KEGG:ssc:100515986
Uniprot:F1S1L9
Length = 551
Score = 166 (63.5 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|K7GQE7 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 Ensembl:ENSSSCT00000033718 Uniprot:K7GQE7
Length = 555
Score = 166 (63.5 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>ZFIN|ZDB-GENE-031118-2 [details] [associations]
symbol:cstf2 "cleavage stimulation factor, 3'
pre-RNA, subunit 2" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-031118-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:BC065442 IPI:IPI00498643 RefSeq:NP_956408.2
UniGene:Dr.113612 ProteinModelPortal:Q6P0U7 SMR:Q6P0U7
STRING:Q6P0U7 PRIDE:Q6P0U7 GeneID:386806 KEGG:dre:386806
InParanoid:Q6P0U7 NextBio:20814024 ArrayExpress:Q6P0U7 Bgee:Q6P0U7
Uniprot:Q6P0U7
Length = 488
Score = 165 (63.1 bits), Expect = 1.9e-11, P = 1.9e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 26 VFVGNIPYEATEEQLKDIFSEVGLVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 85
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 86 NGREFSGRALRVDNAASEKN 105
>UNIPROTKB|Q8HXM1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=ISS]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=ISS] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0005847 EMBL:AY130297 IPI:IPI00694260 RefSeq:NP_777110.1
UniGene:Bt.3723 UniGene:Bt.78724 ProteinModelPortal:Q8HXM1
SMR:Q8HXM1 STRING:Q8HXM1 PRIDE:Q8HXM1 GeneID:282588 KEGG:bta:282588
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
NextBio:20806300 ArrayExpress:Q8HXM1 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
Uniprot:Q8HXM1
Length = 572
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|K7GS58 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641
EMBL:CU861981 GeneID:100515986 RefSeq:XP_003135279.1
Ensembl:ENSSSCT00000034722 Uniprot:K7GS58
Length = 572
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|E2RP40 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:1478 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AAEX03026714
RefSeq:XP_861405.1 Ensembl:ENSCAFT00000027826 GeneID:492015
KEGG:cfa:492015 Uniprot:E2RP40
Length = 577
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|P33240 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=IDA]
[GO:0071920 "cleavage body" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=TAS] [GO:0006379 "mRNA cleavage"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0006378
GO:GO:0003723 GO:GO:0000398 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0005847 GO:GO:0006379 GO:GO:0006369 Reactome:REACT_78
CTD:1478 HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407
GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327
Pfam:PF14304 EMBL:M85085 EMBL:BT009778 EMBL:Z83819 EMBL:Z95327
EMBL:BC017712 EMBL:BC033135 IPI:IPI00013256 IPI:IPI00607841
PIR:A40220 RefSeq:NP_001316.1 UniGene:Hs.132370 PDB:1P1T PDB:2J8P
PDBsum:1P1T PDBsum:2J8P ProteinModelPortal:P33240 SMR:P33240
DIP:DIP-36129N IntAct:P33240 MINT:MINT-1375144 STRING:P33240
PhosphoSite:P33240 DMDM:461847 PaxDb:P33240 PRIDE:P33240 DNASU:1478
Ensembl:ENST00000372972 Ensembl:ENST00000413437 GeneID:1478
KEGG:hsa:1478 UCSC:uc004egh.3 UCSC:uc004egi.3 GeneCards:GC0XP100075
HGNC:HGNC:2484 HPA:CAB004680 HPA:HPA000427 MIM:600368
neXtProt:NX_P33240 PharmGKB:PA26986 InParanoid:P33240
OrthoDB:EOG4640BW PhylomeDB:P33240 EvolutionaryTrace:P33240
GenomeRNAi:1478 NextBio:6073 ArrayExpress:P33240 Bgee:P33240
CleanEx:HS_CSTF2 Genevestigator:P33240 GermOnline:ENSG00000101811
Uniprot:P33240
Length = 577
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|Q5RDA3 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9601 "Pongo abelii" [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISS]
[GO:0071920 "cleavage body" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0005847 CTD:1478 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
EMBL:CR858012 RefSeq:NP_001125111.1 UniGene:Pab.17359
ProteinModelPortal:Q5RDA3 SMR:Q5RDA3 GeneID:100171993
KEGG:pon:100171993 InParanoid:Q5RDA3 Uniprot:Q5RDA3
Length = 577
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>MGI|MGI:1343054 [details] [associations]
symbol:Cstf2 "cleavage stimulation factor, 3' pre-RNA
subunit 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005847 "mRNA cleavage and
polyadenylation specificity factor complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0071920 "cleavage
body" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343054
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL671915 eggNOG:COG0724 GO:GO:0005847 CTD:1478
HOGENOM:HOG000214373 HOVERGEN:HBG051145 KO:K14407 GO:GO:0071920
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OrthoDB:EOG4640BW EMBL:AF317552 EMBL:AK032817 EMBL:AK088260
EMBL:BC036719 IPI:IPI00457575 IPI:IPI00607981 RefSeq:NP_573459.1
UniGene:Mm.67938 ProteinModelPortal:Q8BIQ5 SMR:Q8BIQ5 STRING:Q8BIQ5
PhosphoSite:Q8BIQ5 REPRODUCTION-2DPAGE:IPI00607981 PaxDb:Q8BIQ5
PRIDE:Q8BIQ5 Ensembl:ENSMUST00000033609 Ensembl:ENSMUST00000113286
GeneID:108062 KEGG:mmu:108062 UCSC:uc009ufi.1 UCSC:uc009ufj.1
GeneTree:ENSGT00550000074641 InParanoid:A2AEK0 NextBio:359962
Bgee:Q8BIQ5 CleanEx:MM_CSTF2 Genevestigator:Q8BIQ5
GermOnline:ENSMUSG00000031256 Uniprot:Q8BIQ5
Length = 580
Score = 166 (63.5 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 165 (63.1 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 43/125 (34%), Positives = 69/125 (55%)
Query: 3 TVEDCNAVIENLDGREYLGRILRVN--FSDKPKPKLPLYAETD-FKLFVGNLSWSVTTES 59
T E + + L+GR ++VN F P E F +FVG+LS V E
Sbjct: 129 TNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNNTEEPLFNIFVGDLSPEVNDEG 188
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L AF ++ ++ A V++D ++ RSRGYGFV + +++ E AL+++NG L GRA+R +
Sbjct: 189 LRNAFSKFESLKQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNW 248
Query: 120 AQGRR 124
A ++
Sbjct: 249 ASHKQ 253
>UNIPROTKB|E1BVJ6 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:AADN02013338 IPI:IPI00821790
Ensembl:ENSGALT00000039789 ArrayExpress:E1BVJ6 Uniprot:E1BVJ6
Length = 592
Score = 166 (63.5 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|F1MVI1 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 EMBL:DAAA02070747 EMBL:DAAA02070748
IPI:IPI00829562 Ensembl:ENSBTAT00000045511 ArrayExpress:F1MVI1
Uniprot:F1MVI1
Length = 592
Score = 166 (63.5 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|I3LE23 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071920 "cleavage body" evidence=IEA] [GO:0005847
"mRNA cleavage and polyadenylation specificity factor complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005847
KO:K14407 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:CU861981 KEGG:ssc:100515986 RefSeq:XP_003360436.1
Ensembl:ENSSSCT00000027214 GeneID:100515986 Uniprot:I3LE23
Length = 592
Score = 166 (63.5 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|E7EWR4 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 EMBL:Z83819
EMBL:Z95327 HGNC:HGNC:2484 IPI:IPI00902991
ProteinModelPortal:E7EWR4 SMR:E7EWR4 Ensembl:ENST00000415585
UCSC:uc010nnd.3 OMA:GMEARSM ArrayExpress:E7EWR4 Bgee:E7EWR4
Uniprot:E7EWR4
Length = 597
Score = 166 (63.5 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|E1C8T0 [details] [associations]
symbol:CSTF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 OMA:GMEARSM EMBL:AADN02013338
IPI:IPI00682692 Ensembl:ENSGALT00000010922 ArrayExpress:E1C8T0
Uniprot:E1C8T0
Length = 608
Score = 166 (63.5 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>RGD|1310071 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10116
"Rattus norvegicus" [GO:0005634 "nucleus" evidence=ISO] [GO:0005813
"centrosome" evidence=ISO] [GO:0015630 "microtubule cytoskeleton"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1310071
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH474050 eggNOG:COG0724
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584 HOGENOM:HOG000236253
KO:K13091 OrthoDB:EOG4RJG1P IPI:IPI00555302 GeneID:100910882
KEGG:rno:100910882 EMBL:BC091394 RefSeq:NP_001013225.1
RefSeq:XP_003749654.1 UniGene:Rn.8555 SMR:Q5BJP4 STRING:Q5BJP4
GeneID:362251 KEGG:rno:362251 UCSC:RGD:1310071 InParanoid:Q5BJP4
NextBio:679201 Genevestigator:Q5BJP4 Uniprot:Q5BJP4
Length = 524
Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|F6QIA5 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:DAAA02036526 IPI:IPI01017797
Ensembl:ENSBTAT00000002491 Uniprot:F6QIA5
Length = 525
Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|F2Z5I2 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005813 "centrosome" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005813 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622 OMA:AGWDTEI
GeneTree:ENSGT00690000102089 EMBL:CU210870
Ensembl:ENSSSCT00000007997 ArrayExpress:F2Z5I2 Uniprot:F2Z5I2
Length = 525
Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|E1BRU3 [details] [associations]
symbol:LOC100858247 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AADN02019511
IPI:IPI00601860 Ensembl:ENSGALT00000002354 Uniprot:E1BRU3
Length = 529
Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|E2R4L0 [details] [associations]
symbol:RBM39 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005813 "centrosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
CTD:9584 KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089
EMBL:AAEX03013911 RefSeq:XP_864959.2 ProteinModelPortal:E2R4L0
SMR:E2R4L0 PRIDE:E2R4L0 Ensembl:ENSCAFT00000013241 GeneID:477216
KEGG:cfa:477216 NextBio:20852735 Uniprot:E2R4L0
Length = 530
Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|Q14498 [details] [associations]
symbol:RBM39 "RNA-binding protein 39" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006396 "RNA processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] [GO:0015630 "microtubule cytoskeleton"
evidence=IDA] InterPro:IPR000504 InterPro:IPR006509
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005813 EMBL:CH471077 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0006396
eggNOG:COG0724 EMBL:AL357374 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622
EMBL:L10910 EMBL:L10911 EMBL:AK299678 EMBL:BC131543 EMBL:BC141835
EMBL:BC158172 IPI:IPI00163505 IPI:IPI00215801 IPI:IPI00514831
PIR:I55595 RefSeq:NP_001229528.1 RefSeq:NP_001229529.1
RefSeq:NP_004893.1 RefSeq:NP_909122.1 UniGene:Hs.282901 PDB:2JRS
PDBsum:2JRS ProteinModelPortal:Q14498 SMR:Q14498 IntAct:Q14498
MINT:MINT-5004569 STRING:Q14498 PhosphoSite:Q14498 DMDM:28201880
PaxDb:Q14498 PRIDE:Q14498 Ensembl:ENST00000253363
Ensembl:ENST00000361162 Ensembl:ENST00000528062 GeneID:9584
KEGG:hsa:9584 UCSC:uc002xeb.3 UCSC:uc002xec.3 CTD:9584
GeneCards:GC20M034291 HGNC:HGNC:15923 HPA:HPA001591 MIM:604739
neXtProt:NX_Q14498 PharmGKB:PA34450 HOGENOM:HOG000236253
InParanoid:Q14498 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
PhylomeDB:Q14498 ChiTaRS:RBM39 EvolutionaryTrace:Q14498
GenomeRNAi:9584 NextBio:35953 ArrayExpress:Q14498 Bgee:Q14498
CleanEx:HS_RBM39 Genevestigator:Q14498 GermOnline:ENSG00000131051
Uniprot:Q14498
Length = 530
Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 311 LNGFELAGRPMKV 323
>MGI|MGI:2157953 [details] [associations]
symbol:Rbm39 "RNA binding motif protein 39" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003713
"transcription coactivator activity" evidence=TAS] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006351 "transcription,
DNA-dependent" evidence=TAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2157953
GO:GO:0005634 GO:GO:0005813 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
EMBL:CH466551 GO:GO:0003723 GO:GO:0003713 eggNOG:COG0724
EMBL:AL929404 HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 CTD:9584
HOGENOM:HOG000236253 KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
ChiTaRS:RBM39 EMBL:AY061882 EMBL:AK147076 EMBL:BX649640
EMBL:BC004000 EMBL:BC030493 EMBL:BC086645 IPI:IPI00127763
IPI:IPI00223371 IPI:IPI00223372 RefSeq:NP_573505.2
UniGene:Mm.392436 UniGene:Mm.436932 PDB:2LQ5 PDB:3S6E PDBsum:2LQ5
PDBsum:3S6E ProteinModelPortal:Q8VH51 SMR:Q8VH51 IntAct:Q8VH51
STRING:Q8VH51 PhosphoSite:Q8VH51 PaxDb:Q8VH51 PRIDE:Q8VH51
Ensembl:ENSMUST00000029149 Ensembl:ENSMUST00000109587
Ensembl:ENSMUST00000146297 GeneID:170791 KEGG:mmu:170791
GeneTree:ENSGT00690000102089 InParanoid:Q5RJI0
EvolutionaryTrace:Q8VH51 NextBio:370435 Bgee:Q8VH51
CleanEx:MM_RBM39 Genevestigator:Q8VH51
GermOnline:ENSMUSG00000027620 Uniprot:Q8VH51
Length = 530
Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|F1MA64 [details] [associations]
symbol:Rbm39 "Protein Rbm39" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310071 GO:GO:0005634 GO:GO:0005813 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01622
KO:K13091 OMA:AGWDTEI GeneTree:ENSGT00690000102089 EMBL:AC118414
IPI:IPI00555302 RefSeq:XP_003749653.1 ProteinModelPortal:F1MA64
SMR:F1MA64 PRIDE:F1MA64 Ensembl:ENSRNOT00000026964 GeneID:100910882
KEGG:rno:100910882 ArrayExpress:F1MA64 Uniprot:F1MA64
Length = 530
Score = 165 (63.1 bits), Expect = 2.2e-11, P = 2.2e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 251 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 310
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 311 LNGFELAGRPMKV 323
>UNIPROTKB|G1K177 [details] [associations]
symbol:CSTF2 "Cleavage stimulation factor subunit 2"
species:9913 "Bos taurus" [GO:0071920 "cleavage body" evidence=IEA]
[GO:0005847 "mRNA cleavage and polyadenylation specificity factor
complex" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005847 GO:GO:0071920 InterPro:IPR025742 InterPro:IPR026896
Pfam:PF14327 Pfam:PF14304 GeneTree:ENSGT00550000074641 OMA:GMEARSM
EMBL:DAAA02070747 EMBL:DAAA02070748 Ensembl:ENSBTAT00000004619
Uniprot:G1K177
Length = 644
Score = 166 (63.5 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 163 (62.4 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 35/88 (39%), Positives = 53/88 (60%)
Query: 40 AET--DFKLFVGNLSWSVTTESLTQAF-QEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 96
AET DF +FVG+L+ VT L F Y ++ GA+V+ D +G S+GYGFV + ++
Sbjct: 171 AETGSDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDES 230
Query: 97 EMETALESLNGVELEGRAMRVSLAQGRR 124
E A+ +NGV RAMR+ +A ++
Sbjct: 231 ERSRAMTEMNGVYCSSRAMRIGVATPKK 258
Score = 109 (43.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG L VT E L Q+F ++G VV ++ +G+ G GFV +S ++ + A++ L
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKI----PAGK--GCGFVQFSDRSSAQEAIQKL 350
Query: 106 NGVELEGRAMRVS 118
+G + +A+R+S
Sbjct: 351 SGAIIGKQAVRLS 363
Score = 102 (41.0 bits), Expect = 9.9e-05, P = 9.9e-05
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+E + +++G+L + L F + G V+ +++ + ++G+S YGFV ++T A E
Sbjct: 80 SEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAE 139
Query: 100 TALESLNG 107
L+S NG
Sbjct: 140 KVLQSYNG 147
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 144 (55.7 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 26/75 (34%), Positives = 48/75 (64%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
++VGNL W+ + +L F + G+V+ AR+ Y+ +GRS+G+G V + + + +++E L
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYE-PTGRSKGFGVVQFENENDAASSIEKL 370
Query: 106 NGVELEGRAMRVSLA 120
NG GR +++S A
Sbjct: 371 NGYRYGGRPLQLSYA 385
Score = 141 (54.7 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 40/130 (30%), Positives = 66/130 (50%)
Query: 2 STVEDCNAVIENLDGREYLGRILRVN--------F-SDKPKPKLPLY---AETDFKLFVG 49
ST E+ I+ L ++++GR++ + F S P +E D +LFVG
Sbjct: 125 STAEEARTAIKTLSNQKFMGRLVYIREDREQNARFGSSSVSPSASSNGKDSEPDRQLFVG 184
Query: 50 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109
NL ++V + L F++ G+V+ A + + E GRSRG G V S+ E A++ L+ +
Sbjct: 185 NLPYNVRWQDLKDLFRQAGSVIRADIQMNQE-GRSRGIGIVVMSSMKEAMHAIQMLHNTD 243
Query: 110 LEGRAMRVSL 119
GR + V L
Sbjct: 244 FMGRTLEVRL 253
Score = 109 (43.4 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 24/79 (30%), Positives = 45/79 (56%)
Query: 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 98
Y + + +++VGNLS+ V L + + GNV+ +L + +G S+G + YST E
Sbjct: 72 YTQQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEIL-NLPNGLSKGCAIIEYSTAEEA 130
Query: 99 ETALESLNGVELEGRAMRV 117
TA+++L+ + GR + +
Sbjct: 131 RTAIKTLSNQKFMGRLVYI 149
Score = 41 (19.5 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRV 26
MS++++ I+ L +++GR L V
Sbjct: 226 MSSMKEAMHAIQMLHNTDFMGRTLEV 251
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 31/77 (40%), Positives = 45/77 (58%)
Query: 49 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108
GN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +LNG
Sbjct: 2 GNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGR 61
Query: 109 ELEGRAMRVSLAQGRRS 125
E GRA+RV A ++
Sbjct: 62 EFSGRALRVDNAASEKN 78
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLF+G L++ ESL Q F +YG + V+ D E+ RSRG+GFV + + + A+ +
Sbjct: 6 KLFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMA 65
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
+NG ++GR +RV A G+ S
Sbjct: 66 MNGKAVDGRQIRVDQA-GKSS 85
>UNIPROTKB|Q86U06 [details] [associations]
symbol:RBM23 "Probable RNA-binding protein 23" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL132780 EMBL:CH471078 eggNOG:COG0724 EMBL:AL135998
EMBL:AF087905 EMBL:AF275678 EMBL:AK001344 EMBL:AL834198
EMBL:BX161440 EMBL:BC002566 EMBL:BC024208 IPI:IPI00168431
IPI:IPI00376960 IPI:IPI00376962 IPI:IPI00376963 IPI:IPI00386141
RefSeq:NP_001070819.1 RefSeq:NP_001070820.1 RefSeq:NP_060577.3
UniGene:Hs.4997 PDB:2CQ4 PDB:2DNZ PDBsum:2CQ4 PDBsum:2DNZ
ProteinModelPortal:Q86U06 SMR:Q86U06 IntAct:Q86U06
MINT:MINT-1382566 STRING:Q86U06 PhosphoSite:Q86U06 DMDM:34925229
PaxDb:Q86U06 PRIDE:Q86U06 DNASU:55147 Ensembl:ENST00000346528
Ensembl:ENST00000359890 Ensembl:ENST00000399922 GeneID:55147
KEGG:hsa:55147 UCSC:uc001whg.3 UCSC:uc001whh.3 UCSC:uc001whi.3
UCSC:uc001whk.1 CTD:55147 GeneCards:GC14M023369 HGNC:HGNC:20155
HPA:HPA004144 neXtProt:NX_Q86U06 PharmGKB:PA134974852
HOVERGEN:HBG057646 InParanoid:Q86U06 OMA:VTERLDG PhylomeDB:Q86U06
ChiTaRS:RBM23 EvolutionaryTrace:Q86U06 GenomeRNAi:55147
NextBio:58862 ArrayExpress:Q86U06 Bgee:Q86U06 CleanEx:HS_RBM23
Genevestigator:Q86U06 GermOnline:ENSG00000100461 TIGRFAMs:TIGR01622
Uniprot:Q86U06
Length = 439
Score = 162 (62.1 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 39/111 (35%), Positives = 59/111 (53%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLPLYAET-------DFKLFVGNLSWSVTTESLTQAFQE 66
L G+ LG + V S K +L A +L+VG+L +++T + L F+
Sbjct: 226 LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP 285
Query: 67 YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117
+G + ++ D ++GRS+GYGF+ +S ALE LNG EL GR MRV
Sbjct: 286 FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>UNIPROTKB|E2QVA8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01622 ProteinModelPortal:E2QVA8
Ensembl:ENSCAFT00000017824 Uniprot:E2QVA8
Length = 440
Score = 162 (62.1 bits), Expect = 3.3e-11, P = 3.3e-11
Identities = 39/111 (35%), Positives = 59/111 (53%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLPLYAET-------DFKLFVGNLSWSVTTESLTQAFQE 66
L G+ LG + V S K +L A +L+VG+L +++T + L F+
Sbjct: 227 LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGSSGPMRLYVGSLHFNITEDMLRGIFEP 286
Query: 67 YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117
+G + ++ D ++GRS+GYGF+ +S ALE LNG EL GR MRV
Sbjct: 287 FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 337
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 33/86 (38%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ ++L Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 33/86 (38%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ ++L Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 33/86 (38%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ ++L Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 154 (59.3 bits), Expect = 3.5e-11, P = 3.5e-11
Identities = 28/77 (36%), Positives = 45/77 (58%)
Query: 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
F ++VGN + T E L F G + R++ D E+GR RG+ F+ ++ + + A+E
Sbjct: 5 FSVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVE 64
Query: 104 SLNGVELEGRAMRVSLA 120
+NG E GR +RV+LA
Sbjct: 65 QMNGAEFNGRPLRVNLA 81
>ZFIN|ZDB-GENE-040426-2852 [details] [associations]
symbol:rbm39a "RNA binding motif protein 39a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006509 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2852 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HSSP:P11940
HOVERGEN:HBG057646 TIGRFAMs:TIGR01622 HOGENOM:HOG000236253
KO:K13091 OMA:AGWDTEI OrthoDB:EOG4RJG1P
GeneTree:ENSGT00690000102089 EMBL:BX001056 EMBL:BC044487
IPI:IPI00498221 RefSeq:NP_001012304.1 UniGene:Dr.38353 SMR:Q803H1
Ensembl:ENSDART00000017973 Ensembl:ENSDART00000135435 GeneID:406251
KEGG:dre:406251 CTD:406251 NextBio:20817886 Uniprot:Q803H1
Length = 523
Score = 163 (62.4 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 30/73 (41%), Positives = 49/73 (67%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 247 RLYVGSLHFNITEDMLRGIFEPFGRIDSIQLMMDSETGRSKGYGFITFSDAECAKKALEQ 306
Query: 105 LNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 307 LNGFELAGRPMKV 319
>UNIPROTKB|I3LPP8 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 OMA:VTERLDG TIGRFAMs:TIGR01622
GeneTree:ENSGT00690000102089 Ensembl:ENSSSCT00000022566
Uniprot:I3LPP8
Length = 423
Score = 161 (61.7 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 38/111 (34%), Positives = 59/111 (53%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLPLYAET-------DFKLFVGNLSWSVTTESLTQAFQE 66
L G+ LG + V S K +L A +L+VG+L +++T + L F+
Sbjct: 217 LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGTGGPMRLYVGSLHFNITEDMLRGIFEP 276
Query: 67 YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117
+G + ++ D ++GRS+GYGF+ +S ALE LNG EL GR MR+
Sbjct: 277 FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRI 327
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 157 (60.3 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 34/86 (39%), Positives = 52/86 (60%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+ ++NG ++GR +RV A G+ S
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/87 (35%), Positives = 53/87 (60%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYG 68
A + ++GR+ +G+ ++VN++ P + F +FVG+LS +TTE + AF +G
Sbjct: 53 AALAAMNGRKIMGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKAAFAPFG 111
Query: 69 NVVGARVLYDGESGRSRGYGFVCYSTK 95
+ ARV+ D +G+S+GYGFV + K
Sbjct: 112 RISDARVVKDMATGKSKGYGFVSFFNK 138
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A + KLFVG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + +
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 100 TALESLNGVELEGRAMRV 117
A+ ++NG ++GR +RV
Sbjct: 62 DAMMAMNGKSVDGRQIRV 79
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 35/82 (42%), Positives = 48/82 (58%)
Query: 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
T +LFV LS T E L AF +G +V ARV+ D +SGRS+G+GFV Y+T + E A
Sbjct: 32 TSPRLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKA 91
Query: 102 LESLNGVELEGRAMRVSLAQGR 123
+N L+G + V A+ R
Sbjct: 92 KAEMNAKFLDGWVIFVDPARPR 113
>SGD|S000000517 [details] [associations]
symbol:GBP2 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0000781 "chromosome, telomeric
region" evidence=IEA] [GO:0042162 "telomeric DNA binding"
evidence=IMP;IPI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA;IPI] [GO:0005694 "chromosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=IGI;IPI] [GO:0000723 "telomere maintenance"
evidence=IGI;IMP;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000000517 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:X59720 EMBL:BK006937
GO:GO:0003723 GO:GO:0000781 GO:GO:0000723 GO:GO:0042162
GO:GO:0010494 eggNOG:COG0724 GO:GO:0016973 EMBL:AY692807 PIR:S19338
RefSeq:NP_009916.1 ProteinModelPortal:P25555 SMR:P25555
DIP:DIP-2735N IntAct:P25555 MINT:MINT-481140 STRING:P25555
PaxDb:P25555 PeptideAtlas:P25555 EnsemblFungi:YCL011C GeneID:850346
KEGG:sce:YCL011C CYGD:YCL011c GeneTree:ENSGT00410000025635
HOGENOM:HOG000111155 OMA:ATHENTE OrthoDB:EOG4F21C2 NextBio:965800
Genevestigator:P25555 GermOnline:YCL011C Uniprot:P25555
Length = 427
Score = 160 (61.4 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 47/128 (36%), Positives = 68/128 (53%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKPKP-------KLPLYAETD--FKLFVGNLSWSV 55
E I DG ++ R L V D P P K E D F++F+ NL +S+
Sbjct: 172 ESVQDAISKFDGALFMDRKLMVR-QDNPPPEAAKEFSKKATREEIDNGFEVFIINLPYSM 230
Query: 56 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115
+SL F+E G+V+ A V D +G SRG+G V Y T+ EM A+++ NG+E+EGR +
Sbjct: 231 NWQSLKDMFKECGHVLRADVELDF-NGFSRGFGSVIYPTEDEMIRAIDTFNGMEVEGRVL 289
Query: 116 RVSLAQGR 123
V +GR
Sbjct: 290 EVR--EGR 295
>TAIR|locus:2027438 [details] [associations]
symbol:GR-RBP6 "glycine-rich RNA-binding protein 6"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005768 "endosome" evidence=IDA] [GO:0005794
"Golgi apparatus" evidence=IDA] [GO:0005802 "trans-Golgi network"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684 GO:GO:0005794
GO:GO:0000166 GO:GO:0005768 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0005802 HSSP:P09651 EMBL:AC026238 EMBL:BT005999 EMBL:AK227482
EMBL:AY085358 IPI:IPI00537929 PIR:A86320 RefSeq:NP_173298.1
UniGene:At.356 UniGene:At.41785 ProteinModelPortal:Q9FZ84
SMR:Q9FZ84 IntAct:Q9FZ84 PaxDb:Q8LEL7 PRIDE:Q9FZ84
EnsemblPlants:AT1G18630.1 GeneID:838444 KEGG:ath:AT1G18630
GeneFarm:3974 TAIR:At1g18630 eggNOG:NOG255734 InParanoid:Q9FZ84
OMA:IFRQPRA PhylomeDB:Q9FZ84 ProtClustDB:CLSN2914186
Genevestigator:Q9FZ84 Uniprot:Q9FZ84
Length = 155
Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
T K+FVG LS S E L +AF +G +V A V+ D ESG SRG+GFV Y + A
Sbjct: 34 TPSKIFVGGLSPSTDVELLKEAFGSFGKIVDAVVVLDRESGLSRGFGFVTYDSIEVANNA 93
Query: 102 LESLNGVELEGRAMRV 117
++++ EL+GR + V
Sbjct: 94 MQAMQNKELDGRIIGV 109
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 159 (61.0 bits), Expect = 6.4e-11, P = 6.4e-11
Identities = 37/110 (33%), Positives = 62/110 (56%)
Query: 11 IENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNV 70
I +L+GR G+ ++VN++ + + F +FVG+LS VT L F Y
Sbjct: 108 ILSLNGRHLFGQPIKVNWAYASGQRED--TSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 71 VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
ARV++D ++GRSRG+GFV + + + +TA++ + G L R +R + A
Sbjct: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWA 215
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 159 (61.0 bits), Expect = 6.8e-11, P = 6.8e-11
Identities = 34/84 (40%), Positives = 51/84 (60%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
D +FVG+LS V+ L + F E Y +V A+V+ D +GRS+GYGFV + + E A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 102 LESLNGVELEGRAMRVSLAQGRRS 125
+ +NGV+ RAMR+ A R++
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKT 279
Score = 113 (44.8 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG L SVT E L Q F E+G +V ++ +G GFV + + E ALE L
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKL 359
Query: 106 NGVELEGRAMRVS 118
NG + + +R+S
Sbjct: 360 NGTVIGKQTVRLS 372
>WB|WBGene00004390 [details] [associations]
symbol:rnp-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035
GO:GO:0007281 eggNOG:COG0724 HSSP:P09651 EMBL:FO080149
HOGENOM:HOG000236289 KO:K11093 InterPro:IPR022023 Pfam:PF12220
GeneTree:ENSGT00530000063750 PIR:G88499 RefSeq:NP_498565.2
ProteinModelPortal:Q09584 SMR:Q09584 DIP:DIP-25425N IntAct:Q09584
MINT:MINT-229501 STRING:Q09584 PaxDb:Q09584
EnsemblMetazoa:K04G7.10.1 EnsemblMetazoa:K04G7.10.2 GeneID:176002
KEGG:cel:CELE_K04G7.10 UCSC:K04G7.10 CTD:176002 WormBase:K04G7.10
InParanoid:Q09584 OMA:THLLPPN NextBio:890690 Uniprot:Q09584
Length = 332
Score = 156 (60.0 bits), Expect = 7.8e-11, P = 7.8e-11
Identities = 30/88 (34%), Positives = 55/88 (62%)
Query: 37 PLYAETDFK-LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 95
P +E ++ LFVG +++ + L + F+ YG + +++D E+G+ RGY F+ YS K
Sbjct: 96 PRASEDPYRTLFVGRINYETSESKLRREFEAYGKIKKLTMVHD-EAGKPRGYAFIEYSDK 154
Query: 96 AEMETALESLNGVELEGRAMRVSLAQGR 123
AEM TA + +G++++G+ + V +GR
Sbjct: 155 AEMHTAYKKADGIKVDGKRLVVDYERGR 182
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 31/81 (38%), Positives = 50/81 (61%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLF+G L++ + L QAF +YG + V+ D E+ RSRG+GFV + + + A+ +
Sbjct: 6 KLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMA 65
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
+NG ++GR +RV A G+ S
Sbjct: 66 MNGKSVDGRQIRVDQA-GKSS 85
>FB|FBgn0037602 [details] [associations]
symbol:CG8021 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046331 "lateral inhibition" evidence=IMP]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0046331 HSSP:Q14103
GeneTree:ENSGT00390000008624 EMBL:BT031072 EMBL:BT032713
RefSeq:NP_649808.1 UniGene:Dm.36782 SMR:Q9VHP3
EnsemblMetazoa:FBtr0081878 GeneID:41021 KEGG:dme:Dmel_CG8021
UCSC:CG8021-RA FlyBase:FBgn0037602 InParanoid:Q9VHP3 OMA:HVANAEV
OrthoDB:EOG4M0CJB GenomeRNAi:41021 NextBio:821758 Uniprot:Q9VHP3
Length = 91
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 30/82 (36%), Positives = 49/82 (59%)
Query: 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 98
+ + +KLFVGNL W++ ++ L F +YG+V A V++D + G S+ YGFV +S +
Sbjct: 5 FVRSSYKLFVGNLPWTIGSKELRTYFSKYGHVANAEVVFDRQLGLSKHYGFVVFSQRDAF 64
Query: 99 ETALESLNGVELEGRAMRVSLA 120
+A + N L+GR + V A
Sbjct: 65 NSA-SNQNTHFLDGRVLTVQRA 85
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KL VG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + + A+ +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
+NG ++GR +RV A G+ S
Sbjct: 67 MNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KL VG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + + A+ +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
+NG ++GR +RV A G+ S
Sbjct: 67 MNGKSVDGRQIRVDQA-GKSS 86
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/81 (39%), Positives = 49/81 (60%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KL VG LS+ +SL Q F +YG + V+ D E+ RSRG+GFV + + + A+ +
Sbjct: 7 KLLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMA 66
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
+NG ++GR +RV A G+ S
Sbjct: 67 MNGKSVDGRQIRVDQA-GKSS 86
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 157 (60.3 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 31/77 (40%), Positives = 50/77 (64%)
Query: 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
F +FVG+LS + T+ L AF +G + RV+ D ++ +S+GYGFV + K+E ETA+
Sbjct: 96 FHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAIT 155
Query: 104 SLNGVELEGRAMRVSLA 120
++NG L R++R + A
Sbjct: 156 AMNGQWLGSRSIRTNWA 172
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 155 (59.6 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 33/84 (39%), Positives = 51/84 (60%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
D +FVG+L+ V+ L + F E Y +V A+V+ D +GRS+GYGFV + + E A
Sbjct: 198 DLSIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 257
Query: 102 LESLNGVELEGRAMRVSLAQGRRS 125
+ +NGV+ RAMR+ A R++
Sbjct: 258 MTEMNGVKCSSRAMRIGPATPRKT 281
Score = 113 (44.8 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 27/73 (36%), Positives = 39/73 (53%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG L SVT E L Q F E+G +V ++ +G GFV + + E ALE L
Sbjct: 308 IFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKL 361
Query: 106 NGVELEGRAMRVS 118
NG + + +R+S
Sbjct: 362 NGTVIGKQTVRLS 374
>FB|FBgn0027841 [details] [associations]
symbol:CstF-64 "Cleavage stimulation factor 64 kilodalton
subunit" species:7227 "Drosophila melanogaster" [GO:0006379 "mRNA
cleavage" evidence=ISS;NAS] [GO:0005848 "mRNA cleavage stimulating
factor complex" evidence=ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006379
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
HSSP:P33240 GO:GO:0005848 EMBL:BT004860 ProteinModelPortal:Q86NL1
SMR:Q86NL1 STRING:Q86NL1 PRIDE:Q86NL1 FlyBase:FBgn0027841
InParanoid:Q86NL1 OrthoDB:EOG4FBG8R ChiTaRS:CstF-64
ArrayExpress:Q86NL1 Bgee:Q86NL1 Uniprot:Q86NL1
Length = 437
Score = 155 (59.6 bits), Expect = 1.9e-10, P = 1.9e-10
Identities = 30/80 (37%), Positives = 49/80 (61%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L + F E G V+ ++++D ESG+ +G+GF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEKLKEIFSEVGPVLSLKLVFDRESGKPKGFGFCEYKDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E+ GR +RV A +S
Sbjct: 78 NGYEIGGRTLRVDNACTEKS 97
>DICTYBASE|DDB_G0287335 [details] [associations]
symbol:DDB_G0287335 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0287335 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000100 RefSeq:XP_637244.1
ProteinModelPortal:Q54KH9 PRIDE:Q54KH9 EnsemblProtists:DDB0233757
GeneID:8626075 KEGG:ddi:DDB_G0287335 eggNOG:NOG271892
InParanoid:Q54KH9 OMA:MEAENEM ProtClustDB:CLSZ2430003
Uniprot:Q54KH9
Length = 91
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 32/77 (41%), Positives = 48/77 (62%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FV L WSV E+L Q F +YG++ + V+ D + RSRG+GFV + ++ A+E+
Sbjct: 4 KIFVSQLPWSVCREALKQHFSKYGSINHSYVVVDKVTKRSRGFGFVTFDQSDSVQKAMEA 63
Query: 105 LNGVELEGRAMRVSLAQ 121
N E+ GR + VS AQ
Sbjct: 64 EN--EMGGRKLVVSFAQ 78
>UNIPROTKB|E1C875 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02000941 EMBL:AADN02000942
IPI:IPI00681985 ProteinModelPortal:E1C875
Ensembl:ENSGALT00000031186 Uniprot:E1C875
Length = 182
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG + G V+YD +GRSRG+ FV + + + A+E
Sbjct: 20 LGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHA 79
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG+EL+GR +RV + +R+
Sbjct: 80 NGMELDGRRIRVDYSITKRA 99
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 157 (60.3 bits), Expect = 2.1e-10, P = 2.1e-10
Identities = 43/119 (36%), Positives = 63/119 (52%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDF-KLFVGNLSWSVTTESLTQ 62
+E N ++ N D + Y+G LR D K T F ++V NL+ S T + L
Sbjct: 181 IEKLNGMLLN-DKQVYVGPFLRRQERDSTANK------TKFTNVYVKNLAESTTDDDLKN 233
Query: 63 AFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
AF EYG + A V+ DGE G+S+G+GFV + + A+ESLNG + + + V AQ
Sbjct: 234 AFGEYGKITSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQ 291
Score = 144 (55.7 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 35/113 (30%), Positives = 61/113 (53%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAF 64
+D I+ L+ G+ +RV +S + P + + +F+ NL S+ ++L F
Sbjct: 88 QDAARAIQELNYIPLYGKPIRVMYSHRD-PSVRRSGAGN--IFIKNLDESIDHKALHDTF 144
Query: 65 QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117
+GN+V +V D SG+S+GYGFV Y+ + + A+E LNG+ L + + V
Sbjct: 145 SSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 135 (52.6 bits), Expect = 4.9e-08, P = 4.9e-08
Identities = 31/98 (31%), Positives = 54/98 (55%)
Query: 24 LRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 83
LRV + K + ++ L+V NL S++ E L + F +G V ++V+ D +G
Sbjct: 300 LRVRYEQNLKEAADKFQSSN--LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGT 356
Query: 84 SRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
S+G GFV ++T E A+ L+G +E + + V++AQ
Sbjct: 357 SKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQ 394
Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 28/72 (38%), Positives = 43/72 (59%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L ++VT L AF + G VV RV D + RS GYG+V ++ + A++ L
Sbjct: 38 LYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQEL 97
Query: 106 NGVELEGRAMRV 117
N + L G+ +RV
Sbjct: 98 NYIPLYGKPIRV 109
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 154 (59.3 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 33/87 (37%), Positives = 54/87 (62%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 98
A D +FVG+L+ VT L + F+ Y +V GA+V+ D +GRS+GYGFV ++ ++E
Sbjct: 112 AGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESER 171
Query: 99 ETALESLNGVELEGRAMRVSLAQGRRS 125
A+ +NG+ R MR+S A +++
Sbjct: 172 NRAMAEMNGLYCSTRPMRISAATPKKN 198
Score = 112 (44.5 bits), Expect = 8.2e-06, P = 8.2e-06
Identities = 22/74 (29%), Positives = 41/74 (55%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L++G+L + V LT F + G +V +V+ + +G+ GYGF+ + + A E L++
Sbjct: 26 LWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTY 85
Query: 106 NGVELEGRAMRVSL 119
NG ++ G + L
Sbjct: 86 NGTQMPGTELTFRL 99
Score = 98 (39.6 bits), Expect = 0.00027, P = 0.00027
Identities = 22/71 (30%), Positives = 40/71 (56%)
Query: 48 VGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 107
V NL +VT E L +AF + G V+ ++ ++GYG+V + T+ E A++ + G
Sbjct: 241 VANLDQNVTEEELKKAFSQLGEVIYVKI------PATKGYGYVQFKTRPSAEEAVQRMQG 294
Query: 108 VELEGRAMRVS 118
+ +A+R+S
Sbjct: 295 QVIGQQAVRIS 305
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 158 (60.7 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 32/84 (38%), Positives = 55/84 (65%)
Query: 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 96
PL+ + F +FVG+LS + T+ L +AF +G + RV+ D ++ +S+GYGFV + K+
Sbjct: 456 PLHKQ--FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKS 513
Query: 97 EMETALESLNGVELEGRAMRVSLA 120
E E+A+ ++NG L R++R + A
Sbjct: 514 EAESAITAMNGQWLGSRSIRTNWA 537
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 154 (59.3 bits), Expect = 2.4e-10, P = 2.4e-10
Identities = 34/84 (40%), Positives = 49/84 (58%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
D +FVG+LS VT L + F + Y +V A+V+ D +GRS+GYGFV + + E A
Sbjct: 201 DLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRA 260
Query: 102 LESLNGVELEGRAMRVSLAQGRRS 125
L +NG R MRV +A +R+
Sbjct: 261 LTEMNGAYCSNRQMRVGIATPKRA 284
Score = 104 (41.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 25/77 (32%), Positives = 40/77 (51%)
Query: 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
T+ +FVG + V E L Q F ++G VV ++ +G GFV ++ + E A
Sbjct: 319 TNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPV------GKGCGFVQFADRKSAEDA 372
Query: 102 LESLNGVELEGRAMRVS 118
+ESLNG + +R+S
Sbjct: 373 IESLNGTVIGKNTVRLS 389
>UNIPROTKB|F1MY46 [details] [associations]
symbol:RBM23 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:DAAA02028045 OMA:VTERLDG
TIGRFAMs:TIGR01622 GeneTree:ENSGT00690000102089 IPI:IPI00693162
UniGene:Bt.91499 Ensembl:ENSBTAT00000023525 Uniprot:F1MY46
Length = 463
Score = 154 (59.3 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 38/111 (34%), Positives = 57/111 (51%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLPLYAET-------DFKLFVGNLSWSVTTESLTQAFQE 66
L G+ LG + V S K +L A +L+VG+L ++T + L +
Sbjct: 241 LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGSGGPVRLYVGSLHCNITEDMLRGILEP 300
Query: 67 YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117
+G + ++ D E+GRS+GYGF+ +S ALE LNG EL GR MR+
Sbjct: 301 FGKIDNIVLMKDSETGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRI 351
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 152 (58.6 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 34/93 (36%), Positives = 53/93 (56%)
Query: 31 KPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 90
K +PK P E KLF+G LS+ T ESL F+++G + V+ D + RSRG+GFV
Sbjct: 22 KARPKSPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFV 81
Query: 91 CYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
Y+T E++ A+ + +++GR + A R
Sbjct: 82 TYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 113
Score = 94 (38.1 bits), Expect = 0.00062, P = 0.00062
Identities = 26/95 (27%), Positives = 46/95 (48%)
Query: 2 STVEDCNAVIENLDGREYLGRILR----VNFSDKPKPKLPLYAETDFKLFVGNLSWSVTT 57
+TVE+ +A + N + GR++ V+ D +P L + K+FVG +
Sbjct: 84 ATVEEVDAAM-NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVK---KIFVGGIKEDTEE 139
Query: 58 ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 92
L F++YG + ++ D SG+ RG+ FV +
Sbjct: 140 HHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF 174
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 153 (58.9 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 35/114 (30%), Positives = 66/114 (57%)
Query: 11 IENLDGREYLGRILRVNFSDKPK-P-KLPLYAETD--FKLFVGNLSWSVTTESLTQAFQE 66
+++ +GRE L + + V ++ +P+ P + ET F +FVG+L + + L +AF +
Sbjct: 95 LQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVK 154
Query: 67 YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G V A+++ D + + +GYGFV Y + + E A++ +NG L R +R + A
Sbjct: 155 FGEVSEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWA 208
Score = 105 (42.0 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 32/106 (30%), Positives = 54/106 (50%)
Query: 15 DGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGAR 74
DG + R+ +++ +L +E LFV NL ++T E L F + G V+ A+
Sbjct: 12 DGDGFNPRV-HARIAEREGFQLASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAK 70
Query: 75 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
++++G + Y FV +S + AL+S NG EL + M V+ A
Sbjct: 71 IIFEGLNDP---YAFVEFSDHNQATLALQSHNGRELLEKEMHVTWA 113
>UNIPROTKB|B4DQI6 [details] [associations]
symbol:TRA2A "cDNA FLJ50614, highly similar to
Transformer-2 protein homolog" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107480 IPI:IPI00220447
UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A EMBL:AC023105
EMBL:AK298815 SMR:B4DQI6 STRING:B4DQI6 Ensembl:ENST00000392502
Uniprot:B4DQI6
Length = 180
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG + G V+YD +GRSRG+ FV + + + A+E
Sbjct: 20 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 79
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG+EL+GR +RV + +R+
Sbjct: 80 NGMELDGRRIRVDYSITKRA 99
>UNIPROTKB|B4DUA9 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 UniGene:Hs.445652 HGNC:HGNC:16645 ChiTaRS:TRA2A
EMBL:AC023105 EMBL:AK300565 EMBL:AK300741 IPI:IPI01014274
SMR:B4DUA9 STRING:B4DUA9 Ensembl:ENST00000538367 Uniprot:B4DUA9
Length = 181
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG + G V+YD +GRSRG+ FV + + + A+E
Sbjct: 20 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 79
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG+EL+GR +RV + +R+
Sbjct: 80 NGMELDGRRIRVDYSITKRA 99
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 152 (58.6 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 32/83 (38%), Positives = 52/83 (62%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
D+ +FVG+L+ VT L + F+ Y +V GA+V+ D +GR++GYGFV +S ++E A
Sbjct: 154 DYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRA 213
Query: 102 LESLNGVELEGRAMRVSLAQGRR 124
+ +NGV R MR+ A ++
Sbjct: 214 MTEMNGVPCSTRPMRIGPAASKK 236
Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG L SVT + L F +YG +V ++ +G+ GFV +S K+ E AL L
Sbjct: 263 VFVGGLDASVTDDHLKNVFSQYGEIVHVKI----PAGKR--CGFVQFSEKSCAEEALRML 316
Query: 106 NGVELEGRAMRVS 118
NGV+L G +R+S
Sbjct: 317 NGVQLGGTTVRLS 329
Score = 97 (39.2 bits), Expect = 0.00032, P = 0.00032
Identities = 21/79 (26%), Positives = 41/79 (51%)
Query: 32 PKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVC 91
P P A+ L++G+L + + L F G +V A+V+ + ++G+ GYGF+
Sbjct: 50 PPSVQPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIE 109
Query: 92 YSTKAEMETALESLNGVEL 110
+++ A E L++ N +
Sbjct: 110 FASHAAAERVLQTFNNAPI 128
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 152 (58.6 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 36/114 (31%), Positives = 64/114 (56%)
Query: 11 IENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNV 70
I L+GR G+ ++VN++ + + F +FVG+LS VT +L +F + +
Sbjct: 117 IMTLNGRHIFGQPMKVNWAYATGQRED--TSSHFNIFVGDLSPEVTDAALFDSFSAFNSC 174
Query: 71 VG----ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
ARV++D ++GRSRG+GFV + + + +TA+ +NG + R +R + A
Sbjct: 175 SSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWA 228
>DICTYBASE|DDB_G0277875 [details] [associations]
symbol:ssbA "ssRNA-binding protein" species:44689
"Dictyostelium discoideum" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0277875 GO:GO:0000166
GenomeReviews:CM000152_GR EMBL:AAFI02000023 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:NOG306795 RefSeq:XP_642055.1
ProteinModelPortal:Q54YZ7 EnsemblProtists:DDB0214897 GeneID:8621267
KEGG:ddi:DDB_G0277875 InParanoid:Q54YZ7 ProtClustDB:CLSZ2846831
Uniprot:Q54YZ7
Length = 286
Score = 148 (57.2 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 29/75 (38%), Positives = 51/75 (68%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 102
DF++FVG+L VT E L QAF +Y + A+V++D + G+SRG+GFV +S+ ++ +A
Sbjct: 199 DFRIFVGDLGNDVTEEMLRQAFLKYPTFLKAKVIFD-KVGKSRGFGFVSFSSSSDYISAF 257
Query: 103 ESLNGVELEGRAMRV 117
++NG + R +++
Sbjct: 258 NTMNGKYIGNRPIKL 272
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 156 (60.0 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 35/125 (28%), Positives = 69/125 (55%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE-----TDFKLFVGNLSWSV 55
+ST++ V N E G+ + + D+ K K+ + E TD LF+ N+ S+
Sbjct: 425 ISTIDGTTTVSSNGGTIEINGKPITI---DRIKSKVERFTEYRKKTTDLSLFINNIDESI 481
Query: 56 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115
+ + + F ++G ++G +++ D E+ R++G+GF+ +S E + AL+SLNG + +
Sbjct: 482 DRDLIKEEFAKHGTIIGIKIVQD-ENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQI 540
Query: 116 RVSLA 120
+VS +
Sbjct: 541 QVSFS 545
Score = 119 (46.9 bits), Expect = 3.5e-06, P = 3.5e-06
Identities = 32/113 (28%), Positives = 55/113 (48%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDF-KLFVGNLSWSVTTESLTQAF 64
D ++ L+ G+ R+ +S + P +T+ +FV NL V L F
Sbjct: 239 DAERALDTLNYTLVHGKPCRIMWSYRD----PTKRKTNVGNIFVKNLEKGVDNAMLYDTF 294
Query: 65 QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117
+GN++ +V + E G S+GYG+V + T E A+E +NG + G+ + V
Sbjct: 295 SSFGNILSCKVEF--EKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINV 345
>UNIPROTKB|Q5ZJX4 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 GO:GO:0030154
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOGENOM:HOG000276232 HSSP:Q9H0Z9 HOVERGEN:HBG108399
OrthoDB:EOG4DV5NS eggNOG:NOG248750 EMBL:AJ720310 IPI:IPI00586902
UniGene:Gga.5690 ProteinModelPortal:Q5ZJX4 SMR:Q5ZJX4
InParanoid:Q5ZJX4 Uniprot:Q5ZJX4
Length = 215
Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 41 ETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+T F K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E
Sbjct: 7 DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 100 TALESLNGVELEGRAMRVSLA 120
A + N + ++GR V+LA
Sbjct: 67 RACKDPNPI-IDGRKANVNLA 86
>ZFIN|ZDB-GENE-040426-1391 [details] [associations]
symbol:tra2a "transformer-2 alpha" species:7955
"Danio rerio" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P52298 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:BX469899 EMBL:BC054632 IPI:IPI00510581 RefSeq:NP_956710.1
UniGene:Dr.75585 SMR:Q7T2A0 STRING:Q7T2A0
Ensembl:ENSDART00000008595 GeneID:393388 KEGG:dre:393388
InParanoid:Q7T2A0 NextBio:20814435 Uniprot:Q7T2A0
Length = 297
Score = 148 (57.2 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 31/79 (39%), Positives = 46/79 (58%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG++ G V+YD +GRSRG+ FV + + + A+E
Sbjct: 137 LGVFGLSLYTTERDLREVFSRYGSLAGVNVVYDQRTGRSRGFAFVYFEHIDDAKEAMERA 196
Query: 106 NGVELEGRAMRVSLAQGRR 124
NG+EL+GR +RV + +R
Sbjct: 197 NGMELDGRRIRVDYSITKR 215
>UNIPROTKB|F1NPM7 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000398 GeneTree:ENSGT00700000104309
OMA:DRYEEYD EMBL:AADN02000941 EMBL:AADN02000942 IPI:IPI00590713
Ensembl:ENSGALT00000017877 Uniprot:F1NPM7
Length = 277
Score = 147 (56.8 bits), Expect = 4.5e-10, P = 4.5e-10
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG + G V+YD +GRSRG+ FV + + + A+E
Sbjct: 123 LGVFGLSLYTTERDLREVFSRYGPLTGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMEHA 182
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG+EL+GR +RV + +R+
Sbjct: 183 NGMELDGRRIRVDYSITKRA 202
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 153 (58.9 bits), Expect = 4.6e-10, P = 4.6e-10
Identities = 41/130 (31%), Positives = 68/130 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKP-------KPKLP-LYAET-----DFKLFVGNL 51
ED N +E ++G+E G+I+ V + K K K L E L++ NL
Sbjct: 144 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 203
Query: 52 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111
++ E L + F +G++ A+V+ E GRS+G+GFVC+S+ E A+ +NG +
Sbjct: 204 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 261
Query: 112 GRAMRVSLAQ 121
+ + V+LAQ
Sbjct: 262 SKPLYVALAQ 271
Score = 143 (55.4 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A+ +F +++ N V ESL
Sbjct: 57 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLK 110
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ F ++G + +V+ D +G+S+G+GFV Y + A+E +NG E+ G+ + V AQ
Sbjct: 111 ELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 169
Score = 123 (48.4 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A+E +
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 60
Query: 106 NGVELEGRAMRVSLAQGRR 124
NG+ L R + V + R+
Sbjct: 61 NGMLLNDRKVFVGRFKSRK 79
>UNIPROTKB|F6VZ39 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL109955
HGNC:HGNC:15818 IPI:IPI00927190 ProteinModelPortal:F6VZ39
SMR:F6VZ39 PRIDE:F6VZ39 Ensembl:ENST00000344785 ArrayExpress:F6VZ39
Bgee:F6VZ39 Uniprot:F6VZ39
Length = 123
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 41 ETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+T F K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 100 TALESLNGVELEGRAMRVSLA 120
A + N + ++GR V+LA
Sbjct: 67 RACKDPNPI-IDGRKANVNLA 86
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A+ +F +++ N V ESL
Sbjct: 68 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLK 121
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ F ++G + +V+ D +G+S+G+GFV Y + A+E +NG E+ G+ + V AQ
Sbjct: 122 ELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 180
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 31/81 (38%), Positives = 47/81 (58%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVG LS+ + L F +YG + V+ D E+ RSRG+GFV + + + A+
Sbjct: 7 KLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAG 66
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
+NG ++GR +RV A G+ S
Sbjct: 67 MNGKTVDGRQIRVDQA-GKSS 86
>TAIR|locus:2171539 [details] [associations]
symbol:RPS19 "ribosomal protein S19" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA;NAS] [GO:0015935 "small ribosomal
subunit" evidence=IEA] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] [GO:0005763 "mitochondrial small
ribosomal subunit" evidence=IDA] InterPro:IPR000504
InterPro:IPR002222 InterPro:IPR005732 InterPro:IPR012677
InterPro:IPR020934 InterPro:IPR023575 Pfam:PF00076 Pfam:PF00203
PRINTS:PR00975 PROSITE:PS00323 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006412
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003735 eggNOG:COG0724
GO:GO:0005763 EMBL:AB018117 Gene3D:3.30.860.10 HAMAP:MF_00531
SUPFAM:SSF54570 TIGRFAMs:TIGR01050 KO:K02965 EMBL:X78035
EMBL:X77989 EMBL:AY045963 EMBL:AY091354 EMBL:Z18203 IPI:IPI00544075
PIR:S71114 RefSeq:NP_568681.1 UniGene:At.5396
ProteinModelPortal:P39697 SMR:P39697 STRING:P39697 PaxDb:P39697
PRIDE:P39697 EnsemblPlants:AT5G47320.1 GeneID:834779
KEGG:ath:AT5G47320 GeneFarm:3993 TAIR:At5g47320 InParanoid:P39697
PhylomeDB:P39697 Genevestigator:P39697 GermOnline:AT5G47320
Uniprot:P39697
Length = 212
Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KL++G LS SL AF + V ARV+ + +GRSRGYGFV + ++ +A+ +
Sbjct: 32 KLYIGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISA 91
Query: 105 LNGVELEGRAMRVSLAQ 121
+NG EL G + V++A+
Sbjct: 92 MNGQELNGFNISVNVAK 108
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 151 (58.2 bits), Expect = 5.4e-10, P = 5.4e-10
Identities = 32/97 (32%), Positives = 55/97 (56%)
Query: 29 SDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 88
+ +P ++ + F +FVG+LS V+ E L F ++G V A+V+ D ++ +S+GYG
Sbjct: 210 ASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYG 269
Query: 89 FVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRRS 125
FV + K E A+ +NG + RA+R + A + S
Sbjct: 270 FVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARKNS 306
Score = 94 (38.1 bits), Expect = 0.00078, P = 0.00078
Identities = 34/123 (27%), Positives = 60/123 (48%)
Query: 8 NAVIENLDGREYLG-RILRVNF-----SDKPKPKLP---LYAET---DFKLFVGNLSWSV 55
NA I ++G+ ++G R +R N+ S++ + KL ++ T + ++VGN+S
Sbjct: 281 NA-IAGMNGK-WIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQT 338
Query: 56 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115
T L F YG++ R+ +++ Y FV Y K A+ +NG E+ G +
Sbjct: 339 TDADLRDLFSTYGDIAEVRIF------KTQRYAFVRYEKKECATKAIMEMNGKEMAGNQV 392
Query: 116 RVS 118
R S
Sbjct: 393 RCS 395
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 153 (58.9 bits), Expect = 5.5e-10, P = 5.5e-10
Identities = 41/130 (31%), Positives = 68/130 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKP-------KPKLP-LYAET-----DFKLFVGNL 51
ED N +E ++G+E G+I+ V + K K K L E L++ NL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 52 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111
++ E L + F +G++ A+V+ E GRS+G+GFVC+S+ E A+ +NG +
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 112 GRAMRVSLAQ 121
+ + V+LAQ
Sbjct: 360 SKPLYVALAQ 369
Score = 143 (55.4 bits), Expect = 6.5e-09, P = 6.5e-09
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A+ +F +++ N V ESL
Sbjct: 155 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLK 208
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ F ++G + +V+ D +G+S+G+GFV Y + A+E +NG E+ G+ + V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
Score = 126 (49.4 bits), Expect = 4.4e-07, P = 4.4e-07
Identities = 32/119 (26%), Positives = 63/119 (52%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ G+ +R+ +S + P L + +F+ NL S+ ++L F
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGVGN--VFIKNLDKSIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ +V+ D E+G S+GY FV + T+ + A+E +NG+ L R + V + R+
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 153 (58.9 bits), Expect = 5.7e-10, P = 5.7e-10
Identities = 29/76 (38%), Positives = 50/76 (65%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
LFV NL ++ +E L + F+ +G + A+V+ D E+G+S+G+GFVC++T E A+ +
Sbjct: 338 LFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEM 396
Query: 106 NGVELEGRAMRVSLAQ 121
N + G+ + V+LAQ
Sbjct: 397 NTRMINGKPLYVALAQ 412
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 35/114 (30%), Positives = 58/114 (50%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDK-PKPKLPLYAETDFKLFVGNLSWSVTTESLTQA 63
ED IE L+ GR R+ +S + P + D +F+ NL ++ ++L
Sbjct: 104 EDGEKAIEELNYNPIEGRPCRIMWSQRDPSAR----RSGDGNIFIKNLHPAIDNKALHDT 159
Query: 64 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117
F +G ++ +V D E G+S+ +GFV Y T E A+E++NG+ L R + V
Sbjct: 160 FSAFGKILSCKVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFV 212
Score = 125 (49.1 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 31/82 (37%), Positives = 42/82 (51%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
AE L+VG L+ SV +L + F G V RV D S +S GY +V Y + E
Sbjct: 48 AENSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGE 107
Query: 100 TALESLNGVELEGRAMRVSLAQ 121
A+E LN +EGR R+ +Q
Sbjct: 108 KAIEELNYNPIEGRPCRIMWSQ 129
Score = 123 (48.4 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 35/125 (28%), Positives = 60/125 (48%)
Query: 3 TVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE--TDF-KLFVGNLSWSVTTES 59
T E A IEN++G R + V K + + E +F ++V N+ + + ES
Sbjct: 189 TAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEES 248
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
+ F +G + + D + G+S+G+GFV + A+E LN E+ G+ + V
Sbjct: 249 FEKLFSPFGKITSIYLEKD-QDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGR 307
Query: 120 AQGRR 124
AQ +R
Sbjct: 308 AQKKR 312
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 153 (58.9 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 41/130 (31%), Positives = 68/130 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKP-------KPKLP-LYAET-----DFKLFVGNL 51
ED N +E ++G+E G+I+ V + K K K L E L++ NL
Sbjct: 242 EDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 52 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111
++ E L + F +G++ A+V+ E GRS+G+GFVC+S+ E A+ +NG +
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 112 GRAMRVSLAQ 121
+ + V+LAQ
Sbjct: 360 SKPLYVALAQ 369
Score = 143 (55.4 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A+ +F +++ N V ESL
Sbjct: 155 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLK 208
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ F ++G + +V+ D +G+S+G+GFV Y + A+E +NG E+ G+ + V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 32/119 (26%), Positives = 63/119 (52%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ G+ +R+ +S + P L + +F+ NL S+ ++L F
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGVGN--VFIKNLDKSIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ +V+ D E+G S+GY FV + T+ + A+E +NG+ L R + V + R+
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 153 (58.9 bits), Expect = 5.9e-10, P = 5.9e-10
Identities = 40/130 (30%), Positives = 68/130 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKP-------KPKLP-LYAET-----DFKLFVGNL 51
ED N +E ++G+E G+++ V + K K K L E L++ NL
Sbjct: 242 EDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 52 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111
++ E L + F +G++ A+V+ E GRS+G+GFVC+S+ E A+ +NG +
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 112 GRAMRVSLAQ 121
+ + V+LAQ
Sbjct: 360 SKPLYVALAQ 369
Score = 143 (55.4 bits), Expect = 7.0e-09, P = 7.0e-09
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A+ +F +++ N V E+L
Sbjct: 155 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLK 208
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ F ++G + +V+ D SG+S+G+GFV Y + A+E +NG E+ G+ + V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQ 267
Score = 126 (49.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 32/119 (26%), Positives = 63/119 (52%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ G+ +R+ +S + P L + +F+ NL S+ ++L F
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGVGN--VFIKNLDKSIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ +V+ D E+G S+GY FV + T+ + A+E +NG+ L R + V + R+
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>ASPGD|ASPL0000055210 [details] [associations]
symbol:AN0917 species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 EMBL:BN001308
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AACD01000014
eggNOG:COG0724 TIGRFAMs:TIGR01622 KO:K13091 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 RefSeq:XP_658521.1 ProteinModelPortal:Q5BEW3
EnsemblFungi:CADANIAT00001739 GeneID:2876682 KEGG:ani:AN0917.2
OMA:YVEFRTI Uniprot:Q5BEW3
Length = 552
Score = 152 (58.6 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VGN+ +S+ L F+ +G + ++ D E+GRSRGYGFV + + ALE
Sbjct: 274 RLYVGNIHFSIDENDLQSVFEPFGELEFVQLQKD-ETGRSRGYGFVQFRDPNQAREALEK 332
Query: 105 LNGVELEGRAMRVSLAQGR 123
+NG +L GRA+RV L +
Sbjct: 333 MNGYDLGGRAIRVGLGNDK 351
>UNIPROTKB|G4MR34 [details] [associations]
symbol:MGG_09885 "Cleavage stimulation factor 64-kDa
subunit" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001231 KO:K14407 InterPro:IPR025742
InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304 RefSeq:XP_003709978.1
ProteinModelPortal:G4MR34 SMR:G4MR34 EnsemblFungi:MGG_09885T0
GeneID:2680929 KEGG:mgr:MGG_09885 Uniprot:G4MR34
Length = 305
Score = 147 (56.8 bits), Expect = 6.1e-10, P = 6.1e-10
Identities = 27/80 (33%), Positives = 47/80 (58%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + ++ E +T F G V+ R++YD E+G+ +G+GF Y +A+ +L
Sbjct: 10 VFVGNIPYGLSEEQITDIFSRAGKVLNFRLVYDRETGKPKGFGFAEYPDNDSAASAVRNL 69
Query: 106 NGVELEGRAMRVSLAQGRRS 125
N E+ GR +RV + + S
Sbjct: 70 NDTEIMGRKLRVDFSNEKPS 89
>TAIR|locus:2011726 [details] [associations]
symbol:AT1G76460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0048573 "photoperiodism,
flowering" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 UniGene:At.43912
UniGene:At.70089 IPI:IPI00542968 RefSeq:NP_565132.2
UniGene:At.69045 ProteinModelPortal:F4I2E4 SMR:F4I2E4 PRIDE:F4I2E4
EnsemblPlants:AT1G76460.1 GeneID:843979 KEGG:ath:AT1G76460
OMA:YGPEYMY Uniprot:F4I2E4
Length = 285
Score = 146 (56.5 bits), Expect = 6.5e-10, P = 6.5e-10
Identities = 32/87 (36%), Positives = 50/87 (57%)
Query: 39 YAETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAE 97
+ +T F K+FVG L+W +E+L Q F++YG ++ A V+ D +GRS+GYGFV +
Sbjct: 18 FGDTTFTKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEA 77
Query: 98 METALESLNGVELEGRAMRVSLAQ-GR 123
A + ++GR +LA GR
Sbjct: 78 ARRACADPTPI-IDGRRANCNLASLGR 103
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 31/90 (34%), Positives = 52/90 (57%)
Query: 33 KPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 92
K + P E KLF+G LS+ T ESL F+++G + V+ D + RSRG+GFV Y
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 93 STKAEMETALESLNGVELEGRAMRVSLAQG 122
+T E++ A+ + +++GR + ++ G
Sbjct: 63 ATVEEVDAAMNA-RPHKVDGRVVEATMILG 91
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A+ KLF+G L+ ++L F +YG +V ++ D E+ +SRG+ FV + + A+ +
Sbjct: 4 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 63
Query: 100 TALESLNGVELEGRAMRVSLA 120
A +NG L+G+A++V A
Sbjct: 64 DAARDMNGKSLDGKAIKVEQA 84
>UNIPROTKB|Q74DJ2 [details] [associations]
symbol:GSU1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG++S+ T + L + F G V ++ D E+GRS+G G+V T+ E + A+E+
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 105 LNGVELEGRAMRVSLAQGRR 124
L+G L R + VS+A+ ++
Sbjct: 64 LDGALLRNRVITVSVARPQK 83
>TIGR_CMR|GSU_1324 [details] [associations]
symbol:GSU_1324 "RNA-binding protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR HSSP:P19339
HOGENOM:HOG000276232 RefSeq:NP_952377.1 ProteinModelPortal:Q74DJ2
GeneID:2685944 KEGG:gsu:GSU1324 PATRIC:22025425 OMA:HMSYEAT
ProtClustDB:CLSK828302 BioCyc:GSUL243231:GH27-1311-MONOMER
Uniprot:Q74DJ2
Length = 107
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 28/80 (35%), Positives = 50/80 (62%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VG++S+ T + L + F G V ++ D E+GRS+G G+V T+ E + A+E+
Sbjct: 4 ELYVGHMSYEATEDDLRRLFSVAGTVTSVHIITDPETGRSKGCGYVRMLTEEEAKEAIET 63
Query: 105 LNGVELEGRAMRVSLAQGRR 124
L+G L R + VS+A+ ++
Sbjct: 64 LDGALLRNRVITVSVARPQK 83
>POMBASE|SPAC22E12.02 [details] [associations]
symbol:SPAC22E12.02 "RNA-binding protein" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007126 "meiosis"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC22E12.02 GO:GO:0005634
GO:GO:0007126 EMBL:CU329670 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:NOG306795 PIR:T38159 RefSeq:NP_594828.1
ProteinModelPortal:Q10355 EnsemblFungi:SPAC22E12.02.1
GeneID:2541753 KEGG:spo:SPAC22E12.02 OrthoDB:EOG469V4H
NextBio:20802844 Uniprot:Q10355
Length = 219
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 34/87 (39%), Positives = 49/87 (56%)
Query: 34 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 93
P L + F+LFVGNL V ESL QAF EY ++V +V+ D E G++RG+GFV +
Sbjct: 20 PTLLEWDPNHFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDRE-GKTRGFGFVSFK 78
Query: 94 TKAEMETALESLNGVELEGRAMRVSLA 120
+ A NG + R +++S A
Sbjct: 79 DSDQFLKAWREKNGKYIGSRPVKLSRA 105
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 150 (57.9 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 32/84 (38%), Positives = 49/84 (58%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
D +FVG+L+ V+ L + F Y +V GA+V+ D +GRS+GYGFV + + E A
Sbjct: 212 DLSIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRA 271
Query: 102 LESLNGVELEGRAMRVSLAQGRRS 125
+ +NG R MRV +A +R+
Sbjct: 272 MTEMNGAFCSSRQMRVGIATPKRA 295
Score = 101 (40.6 bits), Expect = 0.00014, P = 0.00014
Identities = 24/73 (32%), Positives = 38/73 (52%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG L VT E L Q F ++G VV ++ +G GFV ++ + E A+ +L
Sbjct: 329 IFVGGLDADVTEEDLMQPFSDFGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGNL 382
Query: 106 NGVELEGRAMRVS 118
NG + +R+S
Sbjct: 383 NGTVIGKNTVRLS 395
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 155 (59.6 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 26/91 (28%), Positives = 56/91 (61%)
Query: 30 DKPKPKL---PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRG 86
D PKP P+ ++++G+++W+VT + + F ++G V+ ++ + ++G+ +G
Sbjct: 752 DVPKPNESAPPVPINEASRIYIGSINWNVTEDQVRSIFSQFGRVISCFLMQNADTGKHKG 811
Query: 87 YGFVCYSTKAEMETALESLNGVELEGRAMRV 117
+GFV + K + A+ ++NG EL GR+++V
Sbjct: 812 FGFVDFELKKSADDAIATMNGFELLGRSIKV 842
Score = 115 (45.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/74 (31%), Positives = 44/74 (59%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+++VG+L +S+T + + F +GN+ + D SG+S+GY F+ Y + AL+S
Sbjct: 589 RIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDA-SGKSKGYAFIEYDNQESAAKALQS 647
Query: 105 LNGVELEGRAMRVS 118
+ + GRA++V+
Sbjct: 648 MTNYVMCGRAIKVA 661
>UNIPROTKB|Q9H0Z9 [details] [associations]
symbol:RBM38 "RNA-binding protein 38" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA;IDA] [GO:0010830 "regulation of myotube
differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005829 "cytosol" evidence=IEA;IDA]
[GO:0043484 "regulation of RNA splicing" evidence=IDA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IDA] [GO:0006977 "DNA damage
response, signal transduction by p53 class mediator resulting in
cell cycle arrest" evidence=IDA] [GO:0006978 "DNA damage response,
signal transduction by p53 class mediator resulting in
transcription of p21 class mediator" evidence=IDA] [GO:0007050
"cell cycle arrest" evidence=IDA] [GO:0008285 "negative regulation
of cell proliferation" evidence=IDA] [GO:0070935 "3'-UTR-mediated
mRNA stabilization" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CH471077 GO:GO:0008285
GO:GO:0030154 GO:GO:0006977 GO:GO:0008380 GO:GO:0000166
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007050
GO:GO:0007049 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
eggNOG:COG0724 GO:GO:0070935 GO:GO:0010830 EMBL:AL109955
HOVERGEN:HBG108399 EMBL:AF432218 EMBL:X75314 EMBL:X75315
EMBL:BC018711 IPI:IPI00306057 IPI:IPI00374855 RefSeq:NP_059965.2
RefSeq:NP_906270.1 UniGene:Hs.236361 PDB:2CQD PDBsum:2CQD
ProteinModelPortal:Q9H0Z9 SMR:Q9H0Z9 IntAct:Q9H0Z9 STRING:Q9H0Z9
PhosphoSite:Q9H0Z9 DMDM:215273895 PaxDb:Q9H0Z9 DNASU:55544
Ensembl:ENST00000356208 Ensembl:ENST00000440234 GeneID:55544
KEGG:hsa:55544 UCSC:uc010zzj.2 CTD:55544 GeneCards:GC20P055966
H-InvDB:HIX0015939 HGNC:HGNC:15818 HPA:CAB017036 MIM:612428
neXtProt:NX_Q9H0Z9 PharmGKB:PA34449 InParanoid:Q9H0Z9 OMA:VGYGYPA
EvolutionaryTrace:Q9H0Z9 GenomeRNAi:55544 NextBio:59995
ArrayExpress:Q9H0Z9 Bgee:Q9H0Z9 CleanEx:HS_RBM38
Genevestigator:Q9H0Z9 GermOnline:ENSG00000132819 Uniprot:Q9H0Z9
Length = 239
Score = 143 (55.4 bits), Expect = 7.0e-10, P = 7.0e-10
Identities = 32/81 (39%), Positives = 51/81 (62%)
Query: 41 ETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+T F K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 100 TALESLNGVELEGRAMRVSLA 120
A + N + ++GR V+LA
Sbjct: 90 RACKDPNPI-IDGRKANVNLA 109
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 150 (57.9 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 30/80 (37%), Positives = 51/80 (63%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 98
+++D L++G+L+ VT + L AFQ Y +V ARV+ D +G SRGYGFV +++ E
Sbjct: 109 SDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDVEK 168
Query: 99 ETALESLNGVELEGRAMRVS 118
+ AL +NG + + ++V+
Sbjct: 169 DKALIDMNGFYINNKPIKVN 188
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 152 (58.6 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 39/124 (31%), Positives = 66/124 (53%)
Query: 3 TVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTES 59
T E N I+ ++G R + V +F + + +L A+ +F +++ N + +
Sbjct: 147 THEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKR 206
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L + F +GN + +V+ D +SGRSRG+GFV Y E + A+ +NG E+ GR + V
Sbjct: 207 LREIFSAFGNTLSVKVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265
Query: 120 AQGR 123
AQ R
Sbjct: 266 AQKR 269
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 35/119 (29%), Positives = 62/119 (52%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ GR +R+ +S + P L + +F+ NL S+ ++L F
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQRD-PGLRKSGVGN--VFIKNLDESIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ +V+ D E G SRGYGFV + T A++++NG+ L R + V + RR
Sbjct: 121 AFGNILSCKVVCD-EHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Score = 130 (50.8 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+V NL + + L + F YG + A+V+ +G G S+G+GFVC+S+ E A+ +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 106 NGVELEGRAMRVSLAQ 121
NG + + + V+LAQ
Sbjct: 354 NGRIVSTKPLYVALAQ 369
Score = 105 (42.0 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 23/76 (30%), Positives = 42/76 (55%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L++G+L VT L + F G ++ RV D + RS Y ++ + A+ E AL+++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++GR +R+ +Q
Sbjct: 73 NFEVIKGRPIRIMWSQ 88
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 152 (58.6 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 40/130 (30%), Positives = 68/130 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKP-------KPKLP-LYAET-----DFKLFVGNL 51
ED N +E ++G+E G+++ V + K K K L E L++ NL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 52 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111
++ E L + F +G++ A+V+ E GRS+G+GFVC+S+ E A+ +NG +
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 112 GRAMRVSLAQ 121
+ + V+LAQ
Sbjct: 360 SKPLYVALAQ 369
Score = 147 (56.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 36/120 (30%), Positives = 65/120 (54%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A+ +F +++ N V ESL
Sbjct: 155 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLK 208
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ F ++G + +V+ D SG+S+G+GFV Y + A+E +NG E+ G+ + V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 32/119 (26%), Positives = 63/119 (52%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ G+ +R+ +S + P L + +F+ NL S+ ++L F
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGVGN--VFIKNLDKSIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ +V+ D E+G S+GY FV + T+ + A+E +NG+ L R + V + R+
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 152 (58.6 bits), Expect = 7.3e-10, P = 7.3e-10
Identities = 40/130 (30%), Positives = 68/130 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKP-------KPKLP-LYAET-----DFKLFVGNL 51
ED N +E ++G+E G+++ V + K K K L E L++ NL
Sbjct: 242 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 301
Query: 52 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111
++ E L + F +G++ A+V+ E GRS+G+GFVC+S+ E A+ +NG +
Sbjct: 302 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 112 GRAMRVSLAQ 121
+ + V+LAQ
Sbjct: 360 SKPLYVALAQ 369
Score = 144 (55.7 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A+ +F +++ N V E+L
Sbjct: 155 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLK 208
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ F ++G + +V+ D SG+S+G+GFV Y + A+E +NG E+ G+ + V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 267
Score = 126 (49.4 bits), Expect = 4.5e-07, P = 4.5e-07
Identities = 32/119 (26%), Positives = 63/119 (52%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ G+ +R+ +S + P L + +F+ NL S+ ++L F
Sbjct: 64 DAERALDTMNFDVIKGKPIRIMWSQRD-PSLRKSGVGN--VFIKNLDKSIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ +V+ D E+G S+GY FV + T+ + A+E +NG+ L R + V + R+
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 110 (43.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 152 (58.6 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 38/121 (31%), Positives = 68/121 (56%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQA 63
+ED ++ ++ G+ +R+ +S + P L + +FV NL S+ +++L
Sbjct: 62 LEDAERALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGVGN--IFVKNLDRSIDSKTLYDT 118
Query: 64 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
F +GN++ +V+ D E+G S+GYGFV + T+ E E A+E +NG+ L R + V + R
Sbjct: 119 FSAFGNILSCKVVCD-ENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSR 176
Query: 124 R 124
R
Sbjct: 177 R 177
Score = 134 (52.2 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 33/96 (34%), Positives = 52/96 (54%)
Query: 30 DKPK-PKLPLYAET---DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSR 85
DKPK ++P L+V NL + E L + F +G + A+V +G GRS+
Sbjct: 286 DKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVTMEG--GRSK 343
Query: 86 GYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
G+GFVC+S+ E A+ +NG + + + V+LAQ
Sbjct: 344 GFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 379
Score = 133 (51.9 bits), Expect = 8.2e-08, P = 8.2e-08
Identities = 35/122 (28%), Positives = 61/122 (50%)
Query: 3 TVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTES 59
T E+ IE ++G R + V F + + L A +F +++ NL + E
Sbjct: 147 TQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDER 206
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L F +G + +V+ D ESG+S+G+GFV + + A++ +NG +L G+ + V
Sbjct: 207 LQDLFSRFGPALSVKVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGR 265
Query: 120 AQ 121
AQ
Sbjct: 266 AQ 267
Score = 102 (41.0 bits), Expect = 0.00017, P = 0.00017
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 34 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 93
P P Y+ L+VG+L VT L + F G ++ RV D + RS GY V +
Sbjct: 3 PSDPSYSLAS--LYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQ 60
Query: 94 TKAEMETALESLNGVELEGRAMRVSLAQ 121
+ E AL+++N ++G+ +R+ +Q
Sbjct: 61 QLEDAERALDTMNFDVIKGKPVRIMWSQ 88
Score = 36 (17.7 bits), Expect = 2.5e-09, Sum P(2) = 2.5e-09
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDK 31
ED ++ ++G++ G+ + V + K
Sbjct: 242 EDARKAVDEMNGKDLNGKQIYVGRAQK 268
>UNIPROTKB|E2R4B2 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:DRYEEYD EMBL:AAEX03009371
Ensembl:ENSCAFT00000004456 Uniprot:E2R4B2
Length = 278
Score = 145 (56.1 bits), Expect = 7.7e-10, P = 7.7e-10
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG + G V+YD +GRSRG+ FV + + + A+E
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG+EL+GR +RV + +R+
Sbjct: 181 NGMELDGRRIRVDYSITKRA 200
>UNIPROTKB|Q06AA6 [details] [associations]
symbol:TRA2A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 CTD:29896
HOVERGEN:HBG102125 KO:K12897 OMA:DRYEEYD OrthoDB:EOG4BVRW2
EMBL:CU928731 EMBL:DQ972958 RefSeq:NP_001070691.1 UniGene:Ssc.14084
SMR:Q06AA6 Ensembl:ENSSSCT00000016762 GeneID:768110 KEGG:ssc:768110
Uniprot:Q06AA6
Length = 279
Score = 145 (56.1 bits), Expect = 7.8e-10, P = 7.8e-10
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG + G V+YD +GRSRG+ FV + + + A+E
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG+EL+GR +RV + +R+
Sbjct: 181 NGMELDGRRIRVDYSITKRA 200
>UNIPROTKB|Q2KJ71 [details] [associations]
symbol:TRA2A "Transformer 2 alpha homolog (Drosophila)"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0000398 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 CTD:29896 HOVERGEN:HBG102125 KO:K12897
OMA:DRYEEYD OrthoDB:EOG4BVRW2 EMBL:DAAA02010222 EMBL:BC105489
IPI:IPI00695902 RefSeq:NP_001039845.1 UniGene:Bt.43563 SMR:Q2KJ71
STRING:Q2KJ71 Ensembl:ENSBTAT00000016756 GeneID:534586
KEGG:bta:534586 InParanoid:Q2KJ71 NextBio:20876456 Uniprot:Q2KJ71
Length = 281
Score = 145 (56.1 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG + G V+YD +GRSRG+ FV + + + A+E
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG+EL+GR +RV + +R+
Sbjct: 181 NGMELDGRRIRVDYSITKRA 200
>MGI|MGI:1933972 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1933972 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 ChiTaRS:TRA2A EMBL:BC057448
IPI:IPI01008014 UniGene:Mm.196598 ProteinModelPortal:Q6PFR5
SMR:Q6PFR5 IntAct:Q6PFR5 STRING:Q6PFR5 PhosphoSite:Q6PFR5
PaxDb:Q6PFR5 PRIDE:Q6PFR5 UCSC:uc009bwm.1 InParanoid:Q6PFR5
CleanEx:MM_TRA2A Genevestigator:Q6PFR5
GermOnline:ENSMUSG00000029817 Uniprot:Q6PFR5
Length = 281
Score = 145 (56.1 bits), Expect = 8.0e-10, P = 8.0e-10
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG + G V+YD +GRSRG+ FV + + + A+E
Sbjct: 119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 178
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG+EL+GR +RV + +R+
Sbjct: 179 NGMELDGRRIRVDYSITKRA 198
>UNIPROTKB|Q13595 [details] [associations]
symbol:TRA2A "Transformer-2 protein homolog alpha"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 EMBL:U53209 EMBL:BC017094
IPI:IPI00013891 IPI:IPI00220447 RefSeq:NP_037425.1
UniGene:Hs.445652 ProteinModelPortal:Q13595 SMR:Q13595
IntAct:Q13595 MINT:MINT-1683046 STRING:Q13595 PhosphoSite:Q13595
DMDM:4033480 PaxDb:Q13595 PRIDE:Q13595 DNASU:29896
Ensembl:ENST00000297071 GeneID:29896 KEGG:hsa:29896 UCSC:uc003swi.3
CTD:29896 GeneCards:GC07M023544 HGNC:HGNC:16645 HPA:HPA054018
MIM:602718 neXtProt:NX_Q13595 PharmGKB:PA164726707
HOVERGEN:HBG102125 InParanoid:Q13595 KO:K12897 OMA:DRYEEYD
OrthoDB:EOG4BVRW2 PhylomeDB:Q13595 ChiTaRS:TRA2A GenomeRNAi:29896
NextBio:52459 ArrayExpress:Q13595 Bgee:Q13595 Genevestigator:Q13595
GermOnline:ENSG00000164548 Uniprot:Q13595
Length = 282
Score = 145 (56.1 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG + G V+YD +GRSRG+ FV + + + A+E
Sbjct: 121 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 180
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG+EL+GR +RV + +R+
Sbjct: 181 NGMELDGRRIRVDYSITKRA 200
>RGD|1562563 [details] [associations]
symbol:Tra2a "transformer 2 alpha homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1562563 GO:GO:0005634
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0000398
eggNOG:COG0724 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
HOVERGEN:HBG102125 OrthoDB:EOG4BVRW2 EMBL:BC161978 IPI:IPI00201580
UniGene:Rn.203363 SMR:B1WC25 STRING:B1WC25
Ensembl:ENSRNOT00000012325 UCSC:RGD:1562563 Genevestigator:B1WC25
Uniprot:B1WC25
Length = 282
Score = 145 (56.1 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V LS T L + F YG + G V+YD +GRSRG+ FV + + + A+E
Sbjct: 119 LGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKEAMERA 178
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG+EL+GR +RV + +R+
Sbjct: 179 NGMELDGRRIRVDYSITKRA 198
>UNIPROTKB|F1P133 [details] [associations]
symbol:F1P133 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00600000084414 OMA:YMEGCAP EMBL:AADN02013152
IPI:IPI00575891 ProteinModelPortal:F1P133
Ensembl:ENSGALT00000006408 Uniprot:F1P133
Length = 166
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 23/72 (31%), Positives = 46/72 (63%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+F+G L + +T + F +YG VV ++ D ++G+S+G+ F+CY + A+++
Sbjct: 38 VFIGGLPYQLTEGDVICVFSQYGEVVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 106 NGVELEGRAMRV 117
NG++++GR +RV
Sbjct: 98 NGIKIKGRTIRV 109
>UNIPROTKB|Q5ZMA3 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ719481
IPI:IPI00971402 RefSeq:NP_001012881.1 UniGene:Gga.39322
ProteinModelPortal:Q5ZMA3 SMR:Q5ZMA3 STRING:Q5ZMA3 GeneID:420846
KEGG:gga:420846 CTD:221662 NextBio:20823702 Uniprot:Q5ZMA3
Length = 225
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 105 LNGVELEGRAMRVSLA 120
N + ++GR V+LA
Sbjct: 72 PNPI-IDGRKANVNLA 86
>UNIPROTKB|Q6GQD3 [details] [associations]
symbol:rbm24-a "RNA-binding protein 24-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=IMP]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 EMBL:AF223427 EMBL:BC072812 RefSeq:NP_001080995.1
UniGene:Xl.12316 HSSP:Q9H0Z9 ProteinModelPortal:Q6GQD3 SMR:Q6GQD3
GeneID:394318 KEGG:xla:394318 CTD:394318 Xenbase:XB-GENE-866276
HOVERGEN:HBG108399 Uniprot:Q6GQD3
Length = 225
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 105 LNGVELEGRAMRVSLA 120
N + ++GR V+LA
Sbjct: 72 PNPI-IDGRKANVNLA 86
>UNIPROTKB|Q9I8B3 [details] [associations]
symbol:rbm24-b "RNA-binding protein 24-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0010830 "regulation of myotube differentiation" evidence=ISS]
[GO:0043488 "regulation of mRNA stability" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399 EMBL:AJ271404
EMBL:BC044956 RefSeq:NP_001079578.1 UniGene:Xl.467
ProteinModelPortal:Q9I8B3 SMR:Q9I8B3 GeneID:379265 KEGG:xla:379265
CTD:379265 Xenbase:XB-GENE-6256347 Uniprot:Q9I8B3
Length = 224
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 105 LNGVELEGRAMRVSLA 120
N + ++GR V+LA
Sbjct: 72 PNPI-IDGRKANVNLA 86
>TAIR|locus:2039590 [details] [associations]
symbol:AT2G27330 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 EMBL:BT025704
IPI:IPI00525470 RefSeq:NP_565646.2 UniGene:At.38782
ProteinModelPortal:Q1ECN0 SMR:Q1ECN0 IntAct:Q1ECN0
EnsemblPlants:AT2G27330.1 GeneID:817276 KEGG:ath:AT2G27330
TAIR:At2g27330 eggNOG:NOG290837 InParanoid:Q1ECN0 OMA:IMDKIRC
PhylomeDB:Q1ECN0 ProtClustDB:CLSN2918107 Genevestigator:Q1ECN0
Uniprot:Q1ECN0
Length = 116
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 33/81 (40%), Positives = 47/81 (58%)
Query: 37 PLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST 94
PL F LFV +S+S T E+LTQAF +YG V+ V+ D R +G+ +V +S+
Sbjct: 12 PLLFSRSFSSTLFVKGISFSSTEETLTQAFSQYGQVLKVDVIMDKIRCRPKGFAYVTFSS 71
Query: 95 KAEMETALESLNGVELEGRAM 115
K E E AL LN ++GR +
Sbjct: 72 KEEAEKALLELNAQLVDGRVV 92
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 152 (58.6 bits), Expect = 8.5e-10, P = 8.5e-10
Identities = 40/130 (30%), Positives = 68/130 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKP-------KPKLP-LYAET-----DFKLFVGNL 51
ED N +E ++G+E G+++ V + K K K L E L++ NL
Sbjct: 282 EDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNL 341
Query: 52 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111
++ E L + F +G++ A+V+ E GRS+G+GFVC+S+ E A+ +NG +
Sbjct: 342 DDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVG 399
Query: 112 GRAMRVSLAQ 121
+ + V+LAQ
Sbjct: 400 SKPLYVALAQ 409
Score = 147 (56.8 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 36/120 (30%), Positives = 65/120 (54%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A+ +F +++ N V ESL
Sbjct: 195 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLK 248
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ F ++G + +V+ D SG+S+G+GFV Y + A+E +NG E+ G+ + V AQ
Sbjct: 249 ELFSQFGKTLSVKVMRD-PSGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQ 307
Score = 124 (48.7 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 31/104 (29%), Positives = 58/104 (55%)
Query: 21 GRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80
G+ +R+ +S + P L + +F+ NL S+ ++L F +GN++ +V+ D E
Sbjct: 119 GKPIRIMWSQRD-PSLRKSGVGN--VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-E 174
Query: 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+G S+GY FV + T+ + A+E +NG+ L R + V + R+
Sbjct: 175 NG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK 217
>UNIPROTKB|Q6P8A7 [details] [associations]
symbol:rbm24 "RNA-binding protein 24" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0010830 "regulation of myotube differentiation"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9
HOVERGEN:HBG108399 CTD:221662 OrthoDB:EOG4DV5NS EMBL:BC061322
RefSeq:NP_989016.1 UniGene:Str.6492 ProteinModelPortal:Q6P8A7
SMR:Q6P8A7 STRING:Q6P8A7 GeneID:394612 KEGG:xtr:394612
Xenbase:XB-GENE-493647 eggNOG:NOG248750 InParanoid:Q6P8A7
Bgee:Q6P8A7 Uniprot:Q6P8A7
Length = 226
Score = 141 (54.7 bits), Expect = 8.6e-10, P = 8.6e-10
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 105 LNGVELEGRAMRVSLA 120
N + ++GR V+LA
Sbjct: 72 PNPI-IDGRKANVNLA 86
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 145 (56.1 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 24/77 (31%), Positives = 46/77 (59%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
++FVG LSW VT L F YG + +++ ++GR RG+GF+ ++ + + A++
Sbjct: 13 RIFVGGLSWDVTERQLESTFDRYGKITECQIMVGRDTGRPRGFGFITFTDRRGADDAIKH 72
Query: 105 LNGVELEGRAMRVSLAQ 121
++G EL + + V+ A+
Sbjct: 73 MHGRELGNKVISVNKAE 89
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 143 (55.4 bits), Expect = 9.9e-10, P = 9.9e-10
Identities = 38/132 (28%), Positives = 67/132 (50%)
Query: 5 EDCNAVIENLDGRE------YLGRI---------LRVNFSDKPKPKLPLYAETDFKLFVG 49
ED ++ ++G+E Y+GR L+ F + ++ Y + L+V
Sbjct: 75 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVK 132
Query: 50 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109
NL + E L + F +G + A+V+ +G GRS+G+GFVC+S+ E A+ +NG
Sbjct: 133 NLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRI 190
Query: 110 LEGRAMRVSLAQ 121
+ + + V+LAQ
Sbjct: 191 VATKPLYVALAQ 202
Score = 123 (48.4 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+++ N + E L F ++G + +V+ D ESG+S+G+GFV + + + A++ +
Sbjct: 26 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEM 84
Query: 106 NGVELEGRAMRVSLAQ 121
NG EL G+ + V AQ
Sbjct: 85 NGKELNGKQIYVGRAQ 100
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 150 (57.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 33/93 (35%), Positives = 53/93 (56%)
Query: 32 PKPKLPL-YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 90
PK +P E K+FVG +S T + Q F ++G V+ A ++ D ++GR RG+GFV
Sbjct: 181 PKRAIPRDEQEKTSKIFVGGVSQEATEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFV 240
Query: 91 CYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
+ ++A +E AL +E+ G+ + V AQ R
Sbjct: 241 TFDSEAAVEAALS--RPLEILGKTIEVKKAQPR 271
Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 25/72 (34%), Positives = 42/72 (58%)
Query: 31 KPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFV 90
+P+P+ E D K+F+G L+W T +SL + F ++G V V+ D +GRSRG+GF+
Sbjct: 98 EPEPQGTGIKE-DGKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFL 156
Query: 91 CYSTKAEMETAL 102
+ + T +
Sbjct: 157 TFKDPKTVNTVM 168
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 31/103 (30%), Positives = 56/103 (54%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAF 64
+D I L+G + ++V+++ +P + D L+V L ++T + L Q F
Sbjct: 91 KDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANLYVSGLPKTMTQKELEQLF 145
Query: 65 QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 107
+YG ++ +R+L D +G SRG GF+ + + E E A++ LNG
Sbjct: 146 SQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L V L ++T E L F G + +++ D +G+S GYGFV Y + E A+ +L
Sbjct: 41 LIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 100
Query: 106 NGVELEGRAMRVSLAQ 121
NG+ L+ + ++VS A+
Sbjct: 101 NGLRLQTKTIKVSYAR 116
>FB|FBgn0064117 [details] [associations]
symbol:CG33714 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GeneTree:ENSGT00390000008624 RefSeq:NP_001027083.1
RefSeq:NP_001027084.1 UniGene:Dm.234 SMR:Q0KHQ1 STRING:Q0KHQ1
EnsemblMetazoa:FBtr0091703 EnsemblMetazoa:FBtr0091704
GeneID:3772560 KEGG:dme:Dmel_CG33714 UCSC:CG33714-RA
FlyBase:FBgn0064117 InParanoid:Q0KHQ1 OMA:GHRELRN OrthoDB:EOG4X0K91
NextBio:854180 Uniprot:Q0KHQ1
Length = 90
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/73 (38%), Positives = 46/73 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
++FVGNL W+V + L F+E+G VV A V++D +G S+GYGFV +++ +E +E+
Sbjct: 16 RIFVGNLPWTVGHQELRGYFREFGRVVSANVIFDKRTGCSKGYGFVSFNSLTALEK-IEN 74
Query: 105 LNGVELEGRAMRV 117
LEG + +
Sbjct: 75 EQKHILEGNYLNI 87
>UNIPROTKB|A5GFN7 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 EMBL:CR956362 HOVERGEN:HBG108399
GeneTree:ENSGT00390000002308 UniGene:Ssc.29738
ProteinModelPortal:A5GFN7 STRING:A5GFN7 Ensembl:ENSSSCT00000033672
ArrayExpress:A5GFN7 Uniprot:A5GFN7
Length = 193
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 41 ETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+T F K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 100 TALESLNGVELEGRAMRVSLA 120
A + N ++GR V+LA
Sbjct: 90 RACKDPNP-NIDGRKANVNLA 109
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/77 (36%), Positives = 49/77 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+LFV LS T +SL Q F +G + AR++ D E+ R +G+GF+ + ++ + AL+S
Sbjct: 8 QLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDDARKALKS 67
Query: 105 LNGVELEGRAMRVSLAQ 121
L+G ++GR + V +A+
Sbjct: 68 LDGKIVDGRLIFVEVAK 84
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 147 (56.8 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
D +FVG+L+ VT L+ F+ YG+V GA+V+ D +GRS+GYGFV ++ + E A
Sbjct: 153 DHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRA 212
Query: 102 LESLNGVELEGRAMRVSLAQGRRS 125
+ +NG R MR+ A + +
Sbjct: 213 MTEMNGQYCSTRPMRIGPAANKNA 236
Score = 106 (42.4 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 26/73 (35%), Positives = 42/73 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG L +VT + L F ++G ++ ++ G+ GFV Y+ KA E AL L
Sbjct: 262 IFVGGLDANVTDDELKSIFGQFGELLHVKI----PPGKR--CGFVQYANKASAEHALSVL 315
Query: 106 NGVELEGRAMRVS 118
NG +L G+++R+S
Sbjct: 316 NGTQLGGQSIRLS 328
>ASPGD|ASPL0000078272 [details] [associations]
symbol:AN4330 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001303 eggNOG:COG0724 HOGENOM:HOG000187841 KO:K14573
OrthoDB:EOG4K6KCP EMBL:AACD01000075 OMA:MHALECL RefSeq:XP_661934.1
ProteinModelPortal:Q5B550 STRING:Q5B550
EnsemblFungi:CADANIAT00006131 GeneID:2872127 KEGG:ani:AN4330.2
Uniprot:Q5B550
Length = 724
Score = 136 (52.9 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 30/79 (37%), Positives = 48/79 (60%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+LF+ +L S T ESL + F + + A V+ D ++ +S+GYGFV ++ + + ALE
Sbjct: 38 ELFIRSLPASATNESLAEHFSQSYVIKHAVVVVDPKTKQSKGYGFVTFADVEDAKAALEE 97
Query: 105 LNGVELEGRAMRVSLAQGR 123
LNG EG+ ++V AQ R
Sbjct: 98 LNGSTFEGKKIKVEYAQPR 116
Score = 121 (47.7 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 30/77 (38%), Positives = 41/77 (53%)
Query: 45 KLFVGNLSWSVTT-ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
KL V NL WS+ T E L F+ +G V V + + G+GFV K E ALE
Sbjct: 151 KLIVRNLPWSIKTPEDLAAHFRSFGKV--KYVTLPKKGSQLAGFGFVVLRGKKNAEKALE 208
Query: 104 SLNGVELEGRAMRVSLA 120
++NG E++GR + V A
Sbjct: 209 AVNGKEVDGRTLAVDWA 225
Score = 96 (38.9 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 92
+F+ NL ++ ESL F ++G + AR++ D E+ R RG GFVC+
Sbjct: 311 IFIRNLPFTCDDESLYDHFTQFGPLRYARIVVDPETERPRGTGFVCF 357
Score = 54 (24.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 10/33 (30%), Positives = 22/33 (66%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 36
VED A +E L+G + G+ ++V ++ +P+ ++
Sbjct: 88 VEDAKAALEELNGSTFEGKKIKVEYA-QPRHRV 119
Score = 36 (17.7 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFS 29
++ +E ++G+E GR L V+++
Sbjct: 201 KNAEKALEAVNGKEVDGRTLAVDWA 225
>TAIR|locus:2077577 [details] [associations]
symbol:AT3G06970 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:DQ446643 IPI:IPI00542567
RefSeq:NP_187353.2 UniGene:At.53209 ProteinModelPortal:Q1PES4
SMR:Q1PES4 EnsemblPlants:AT3G06970.1 GeneID:819882
KEGG:ath:AT3G06970 TAIR:At3g06970 eggNOG:NOG252859
HOGENOM:HOG000124795 InParanoid:Q1PES4 OMA:TNCNLAS
ProtClustDB:CLSN2920257 Genevestigator:Q1PES4 Uniprot:Q1PES4
Length = 317
Score = 145 (56.1 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/76 (36%), Positives = 46/76 (60%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVGNL+W T + L + F+++G VV A V+ + GRS+GYGF+ + AL++
Sbjct: 13 KIFVGNLTWRTTADDLRRYFEQFGQVVDANVVSETYPGRSKGYGFITFRDYVSTVRALQN 72
Query: 105 LNGVELEGRAMRVSLA 120
+ ++GR +LA
Sbjct: 73 SKPI-IDGRTTNCNLA 87
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 38/124 (30%), Positives = 66/124 (53%)
Query: 3 TVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTES 59
T E N I+ ++G R + V +F + + +L A+ +F +++ N + +
Sbjct: 147 TQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKR 206
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L + F +GN + +V+ D ++GRSRG+GFV Y E + A+ +NG E+ GR + V
Sbjct: 207 LREIFSAFGNTLSVKVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGR 265
Query: 120 AQGR 123
AQ R
Sbjct: 266 AQKR 269
Score = 134 (52.2 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 35/119 (29%), Positives = 63/119 (52%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ GR +R+ +S + P L + +F+ NL S+ ++L F
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQRD-PGLRKSGVGN--VFIKNLDESIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ +V+ D E G SRGYGFV + T+ A++++NG+ L R + V + RR
Sbjct: 121 AFGNILSCKVVCD-EHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Score = 132 (51.5 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+V NL + + L + F YG + A+V+ +G G S+G+GFVC+S+ E A+ +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 106 NGVELEGRAMRVSLAQ 121
NG + + + V+LAQ
Sbjct: 354 NGRIVSTKPLYVALAQ 369
Score = 112 (44.5 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/76 (32%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L VT L + F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++GR +R+ +Q
Sbjct: 73 NFEVIKGRPIRIMWSQ 88
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 3 TVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTES 59
T E N I+ ++G R + V +F + + +L A+ +F +++ N + +
Sbjct: 147 TQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKR 206
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L + F +GN + +V+ D SGRSRG+GFV Y E + A+ +NG E+ GR + V
Sbjct: 207 LKEIFSAFGNTLSVKVMMDN-SGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGR 265
Query: 120 AQGR 123
AQ R
Sbjct: 266 AQKR 269
Score = 128 (50.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 26/76 (34%), Positives = 44/76 (57%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+V NL + + L + F YG + +V+ +G G S+G+GFVC+S+ E A+ +
Sbjct: 296 LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEM 353
Query: 106 NGVELEGRAMRVSLAQ 121
NG + + + V+LAQ
Sbjct: 354 NGRIVSTKPLYVALAQ 369
Score = 127 (49.8 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 34/119 (28%), Positives = 63/119 (52%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ GR +R+ +S + P L + +F+ NL S+ ++L F
Sbjct: 64 DAERALDTMNFEVIKGRPIRIMWSQRD-PGLRKSGVGN--VFIKNLDDSIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+G+++ +V+ D E G SRGYGFV + T+ A++++NG+ L R + V + RR
Sbjct: 121 AFGDILSCKVVCD-EYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR 177
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L++G+L VT L + F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++GR +R+ +Q
Sbjct: 73 NFEVIKGRPIRIMWSQ 88
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 147 (56.8 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 33/115 (28%), Positives = 62/115 (53%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAF 64
+D I L+G + ++V+++ +P + D L+V L ++T + L Q F
Sbjct: 140 KDAEKAINTLNGLRLQTKTIKVSYA-RPSSA----SIRDANLYVSGLPKTMTQKELEQLF 194
Query: 65 QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
+YG ++ +R+L D +G SRG GF+ + + E E A++ LNG + G A +++
Sbjct: 195 SQYGRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQKPSGAAEPITV 249
Score = 118 (46.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 29/92 (31%), Positives = 47/92 (51%)
Query: 32 PKPKLPLYAETDFK--LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 89
P P + D K L V L ++T E F G + +++ D +G+S GYGF
Sbjct: 74 PSPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGF 133
Query: 90 VCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
V Y + E A+ +LNG+ L+ + ++VS A+
Sbjct: 134 VNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 165
Score = 113 (44.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 28/83 (33%), Positives = 43/83 (51%)
Query: 36 LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK 95
+P + T + +FV NLS L Q F +G V +V+ D + + +G+GFV +
Sbjct: 317 IPGHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNY 376
Query: 96 AEMETALESLNGVELEGRAMRVS 118
E A+ SLNG L R ++VS
Sbjct: 377 DEAAMAIASLNGYRLGDRVLQVS 399
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 146 (56.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAF 64
ED + I+ L+ + G+ +RVN + + K L + A LF+GNL V + L F
Sbjct: 77 EDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGAN----LFIGNLDPDVDEKLLYDTF 132
Query: 65 QEYGNVVG-ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
+G + +++ D ++G SRG+GF+ Y + + A+ES+ G L R + VS A
Sbjct: 133 SAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYA 189
Score = 108 (43.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 26/84 (30%), Positives = 48/84 (57%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 102
D ++VG L ++ E L + F + G VV V D + + YGF+ Y ++ + + A+
Sbjct: 24 DATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAI 83
Query: 103 ESLNGVELEGRAMRVSLA-QGRRS 125
+ LN ++L G+ +RV+ A Q ++S
Sbjct: 84 KVLNMIKLHGKPIRVNKASQDKKS 107
>UNIPROTKB|E1BZ17 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0010830 "regulation of
myotube differentiation" evidence=IEA] [GO:0043488 "regulation of
mRNA stability" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 GO:GO:0010830
GeneTree:ENSGT00390000002308 EMBL:AADN02027548 EMBL:AADN02027547
IPI:IPI00580084 ProteinModelPortal:E1BZ17
Ensembl:ENSGALT00000020752 OMA:ILHRSCL Uniprot:E1BZ17
Length = 245
Score = 141 (54.7 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E A +
Sbjct: 12 KIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 105 LNGVELEGRAMRVSLA 120
N + ++GR V+LA
Sbjct: 72 PNPI-IDGRKANVNLA 86
>ZFIN|ZDB-GENE-030131-5923 [details] [associations]
symbol:rbm38 "RNA binding motif protein 38"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-5923 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000276232 HSSP:Q61474
HOVERGEN:HBG108399 EMBL:AB097829 IPI:IPI00861911 UniGene:Dr.80564
ProteinModelPortal:Q7T2V9 SMR:Q7T2V9 STRING:Q7T2V9
InParanoid:Q7T2V9 Uniprot:Q7T2V9
Length = 246
Score = 141 (54.7 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 41 ETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+T F K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV K+ E
Sbjct: 21 DTTFTKIFVGGLPYHTTDASLRKYFETFGDIDEAVVITDRQTGKSRGYGFVTMMDKSAAE 80
Query: 100 TALESLNGVELEGRAMRVSLA 120
A + N + ++GR V+LA
Sbjct: 81 RACKDPNPI-IDGRKANVNLA 100
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 32/91 (35%), Positives = 51/91 (56%)
Query: 33 KPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCY 92
K + P E KLF+G LS+ T ESL F+++G + V+ D + RSRG+GFV Y
Sbjct: 3 KSESPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTY 62
Query: 93 STKAEMETALESLNGVELEGRAMRVSLAQGR 123
+T E++ A+ + +++GR + A R
Sbjct: 63 ATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 143 (55.4 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 38/132 (28%), Positives = 67/132 (50%)
Query: 5 EDCNAVIENLDGRE------YLGRI---------LRVNFSDKPKPKLPLYAETDFKLFVG 49
ED ++ ++G+E Y+GR L+ F + ++ Y + L+V
Sbjct: 111 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVN--LYVK 168
Query: 50 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109
NL + E L + F +G + A+V+ +G GRS+G+GFVC+S+ E A+ +NG
Sbjct: 169 NLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRI 226
Query: 110 LEGRAMRVSLAQ 121
+ + + V+LAQ
Sbjct: 227 VATKPLYVALAQ 238
Score = 119 (46.9 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 34/120 (28%), Positives = 62/120 (51%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A +F +++ N + E L
Sbjct: 27 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLK 80
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
F G + +V+ D ESG+S+G+GFV + + + A++ +NG EL G+ + V AQ
Sbjct: 81 DLF---GPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQ 136
>MGI|MGI:3610364 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IDA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IMP] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:3610364 GO:GO:0005634 GO:GO:0005737
GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0043488 HOGENOM:HOG000276232 GO:GO:0010830 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ OrthoDB:EOG4DV5NS
EMBL:AC124411 IPI:IPI00380986 RefSeq:NP_001074894.1
UniGene:Mm.38269 ProteinModelPortal:D3Z4I3 SMR:D3Z4I3
Ensembl:ENSMUST00000037923 GeneID:666794 KEGG:mmu:666794
UCSC:uc007qhe.1 NextBio:430851 Bgee:D3Z4I3 Uniprot:D3Z4I3
Length = 236
Score = 140 (54.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 105 LNGVELEGRAMRVSLA 120
N + ++GR V+LA
Sbjct: 72 PNPI-IDGRKANVNLA 86
>RGD|1584029 [details] [associations]
symbol:Rbm24 "RNA binding motif protein 24" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA;ISO] [GO:0010830
"regulation of myotube differentiation" evidence=IEA;ISO]
[GO:0043488 "regulation of mRNA stability" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1584029 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 GO:GO:0043488 GO:GO:0010830 CTD:221662
OrthoDB:EOG4DV5NS IPI:IPI00214952 RefSeq:NP_001178029.1
UniGene:Rn.199020 ProteinModelPortal:D3ZLP6
Ensembl:ENSRNOT00000022768 GeneID:690139 KEGG:rno:690139
NextBio:740266 Uniprot:D3ZLP6
Length = 236
Score = 140 (54.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 30/76 (39%), Positives = 48/76 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 105 LNGVELEGRAMRVSLA 120
N + ++GR V+LA
Sbjct: 72 PNPI-IDGRKANVNLA 86
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 149 (57.5 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 41/129 (31%), Positives = 64/129 (49%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKP-------KPKLPLYAETDFK------LFVGNLS 52
D + ++G+E GR+L V + K K K + + L+V NL
Sbjct: 243 DARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLD 302
Query: 53 WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG 112
S+ E L + F YG + A+V+ DG G SRG+GFVC+S+ E A+ +NG +
Sbjct: 303 DSIDDEKLRKEFAPYGTITSAKVMTDG--GHSRGFGFVCFSSPEEATKAVTEMNGRIVST 360
Query: 113 RAMRVSLAQ 121
+ + V+LAQ
Sbjct: 361 KPLYVALAQ 369
Score = 147 (56.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 39/124 (31%), Positives = 63/124 (50%)
Query: 3 TVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTES 59
T E N IE ++G R + V +F + + + + A+ +F +++ N + +E
Sbjct: 147 TQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEK 206
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L F E+G + V+ D E GRSRG+GFV + + A+ +NG EL GR + V
Sbjct: 207 LKNIFTEFGKTLSVCVMTD-ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGR 265
Query: 120 AQGR 123
AQ R
Sbjct: 266 AQKR 269
Score = 133 (51.9 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 33/119 (27%), Positives = 64/119 (53%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ GR +R+ +S + P L + +F+ N+ S+ ++L F
Sbjct: 64 DAECALDTMNYEVIKGRPIRIMWSQRD-PGLRKSGVGN--IFIKNMDESIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ +V+ D E+G S+GYGFV + T+ A+E++NG+ L R + V + R+
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRK 177
Score = 117 (46.2 bits), Expect = 4.1e-06, P = 4.1e-06
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L VT L Q F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++GR +R+ +Q
Sbjct: 73 NYEVIKGRPIRIMWSQ 88
>MGI|MGI:1889294 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO;IMP]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005829 "cytosol" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=ISO]
[GO:0006978 "DNA damage response, signal transduction by p53 class
mediator resulting in transcription of p21 class mediator"
evidence=ISO] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008285 "negative regulation
of cell proliferation" evidence=ISO] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IDA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0043484 "regulation of RNA splicing" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1889294 GO:GO:0005829 GO:GO:0005634
GO:GO:0008285 GO:GO:0030154 GO:GO:0006977 GO:GO:0008380
GO:GO:0000166 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0007050 EMBL:CH466551 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 HOGENOM:HOG000276232 GO:GO:0070935 EMBL:AL928599
GO:GO:0010830 HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308
OrthoDB:EOG4DV5NS eggNOG:NOG248750 CTD:55544 OMA:VGYGYPA
EMBL:X75316 EMBL:AK146026 EMBL:AK162141 EMBL:AK172625 EMBL:BC085307
IPI:IPI00122313 PIR:S38384 RefSeq:NP_062420.2 UniGene:Mm.485782
ProteinModelPortal:Q62176 SMR:Q62176 STRING:Q62176
PhosphoSite:Q62176 PaxDb:Q62176 PRIDE:Q62176
Ensembl:ENSMUST00000029014 Ensembl:ENSMUST00000173393 GeneID:56190
KEGG:mmu:56190 UCSC:uc008odh.1 InParanoid:Q5U418 ChiTaRS:RBM38
NextBio:311992 Bgee:Q62176 CleanEx:MM_RBM38 Genevestigator:Q62176
GermOnline:ENSMUSG00000027510 Uniprot:Q62176
Length = 237
Score = 140 (54.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 41 ETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+T F K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A +
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 100 TALESLNGVELEGRAMRVSLA 120
A + N + ++GR V+LA
Sbjct: 88 RACKDPNPI-IDGRKANVNLA 107
>RGD|1308503 [details] [associations]
symbol:Rbm38 "RNA binding motif protein 38" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0006977 "DNA
damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=IEA] [GO:0006978 "DNA
damage response, signal transduction by p53 class mediator
resulting in transcription of p21 class mediator" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0008285 "negative
regulation of cell proliferation" evidence=IEA] [GO:0010830
"regulation of myotube differentiation" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1308503 GO:GO:0008285 GO:GO:0006977 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007050 GO:GO:0003730 GO:GO:0043484
GO:GO:0006978 GO:GO:0070935 GO:GO:0010830 EMBL:CH474062
GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS OMA:VGYGYPA
IPI:IPI00190605 UniGene:Rn.17628 Ensembl:ENSRNOT00000008764
Uniprot:D3ZGE9
Length = 237
Score = 140 (54.3 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 31/81 (38%), Positives = 51/81 (62%)
Query: 41 ETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+T F K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A +
Sbjct: 28 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAD 87
Query: 100 TALESLNGVELEGRAMRVSLA 120
A + N + ++GR V+LA
Sbjct: 88 RACKDPNPI-IDGRKANVNLA 107
>MGI|MGI:1919414 [details] [associations]
symbol:Rbmx2 "RNA binding motif protein, X-linked 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1919414 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000174091 KO:K13107
EMBL:AL672042 GeneTree:ENSGT00600000084414 CTD:51634
HOVERGEN:HBG056427 OrthoDB:EOG4FJ8B4 EMBL:AK076115 EMBL:AK168018
EMBL:BC026976 IPI:IPI00261255 RefSeq:NP_775552.1 UniGene:Mm.32561
ProteinModelPortal:Q8R0F5 SMR:Q8R0F5 STRING:Q8R0F5
PhosphoSite:Q8R0F5 PRIDE:Q8R0F5 Ensembl:ENSMUST00000033433
GeneID:209003 KEGG:mmu:209003 UCSC:uc009tct.1 InParanoid:A2AF74
NextBio:372506 Bgee:Q8R0F5 CleanEx:MM_RBMX2 Genevestigator:Q8R0F5
GermOnline:ENSMUSG00000031107 Uniprot:Q8R0F5
Length = 326
Score = 144 (55.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 24/80 (30%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG L + +T + F +YG +V ++ D ++G+S+G+ F+CY + A+++
Sbjct: 38 IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG++++GR +RV R+
Sbjct: 98 NGIKIKGRTIRVDHVSNYRA 117
>UNIPROTKB|E1BLB7 [details] [associations]
symbol:RBM38 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
GO:GO:0070935 GO:GO:0010830 GeneTree:ENSGT00390000002308 CTD:55544
OMA:VGYGYPA EMBL:DAAA02036351 IPI:IPI00696591 RefSeq:NP_001192952.1
UniGene:Bt.106613 ProteinModelPortal:E1BLB7
Ensembl:ENSBTAT00000010660 GeneID:533516 KEGG:bta:533516
NextBio:20876057 Uniprot:E1BLB7
Length = 239
Score = 140 (54.3 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 41 ETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+T F K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 100 TALESLNGVELEGRAMRVSLA 120
A + N ++GR V+LA
Sbjct: 90 RACKDPNP-NIDGRKANVNLA 109
>UNIPROTKB|A5GFN8 [details] [associations]
symbol:RNPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0010830 "regulation of myotube differentiation"
evidence=IEA] [GO:0008285 "negative regulation of cell
proliferation" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0006978 "DNA damage response, signal transduction
by p53 class mediator resulting in transcription of p21 class
mediator" evidence=IEA] [GO:0006977 "DNA damage response, signal
transduction by p53 class mediator resulting in cell cycle arrest"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008285 GO:GO:0006977 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007050 GO:GO:0003730 GO:GO:0043484 GO:GO:0006978
HOGENOM:HOG000276232 GO:GO:0070935 GO:GO:0010830 EMBL:CR956362
HOVERGEN:HBG108399 GeneTree:ENSGT00390000002308 OrthoDB:EOG4DV5NS
CTD:55544 OMA:VGYGYPA UniGene:Ssc.29738 RefSeq:NP_001098782.1
SMR:A5GFN8 STRING:A5GFN8 Ensembl:ENSSSCT00000008216
GeneID:100125973 KEGG:ssc:100125973 Uniprot:A5GFN8
Length = 239
Score = 140 (54.3 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 32/81 (39%), Positives = 50/81 (61%)
Query: 41 ETDF-KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+T F K+FVG L + T SL + F+ +G++ A V+ D ++G+SRGYGFV + +A E
Sbjct: 30 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 89
Query: 100 TALESLNGVELEGRAMRVSLA 120
A + N ++GR V+LA
Sbjct: 90 RACKDPNP-NIDGRKANVNLA 109
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 149 (57.5 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 34/98 (34%), Positives = 52/98 (53%)
Query: 24 LRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 83
LR + K+ Y + LF+ NL V E L F +G + A+++ D E G+
Sbjct: 346 LRKRYEQMKLEKMNKYQGVN--LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGK 402
Query: 84 SRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
S+G+GFVCY+T E A+ +N L G+ + V+LAQ
Sbjct: 403 SKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQ 440
Score = 121 (47.7 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 30/82 (36%), Positives = 41/82 (50%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A T L+VG L SVT L + F G V RV D + RS GY +V + + E
Sbjct: 76 APTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGE 135
Query: 100 TALESLNGVELEGRAMRVSLAQ 121
AL+ LN ++GR R+ +Q
Sbjct: 136 KALDELNYTLIKGRPCRIMWSQ 157
Score = 119 (46.9 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 32/121 (26%), Positives = 59/121 (48%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQA 63
+ED ++ L+ GR R+ +S + P L + +F+ NL ++ ++L
Sbjct: 131 MEDGEKALDELNYTLIKGRPCRIMWSQRD-PSLRKMGTGN--VFIKNLDPAIDNKALHDT 187
Query: 64 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
F +G ++ +V D E G ++GYGFV + + A+E +NG+ L + + V R
Sbjct: 188 FSAFGKILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSR 246
Query: 124 R 124
R
Sbjct: 247 R 247
Score = 118 (46.6 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 31/125 (24%), Positives = 64/125 (51%)
Query: 3 TVEDCNAVIENLDG------REYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVT 56
+VE NA IE+++G + Y+G V+ ++ + K+ +++ NL +T
Sbjct: 217 SVESANAAIEHVNGMLLNDKKVYVGH--HVSRRER-QSKVEALKANFTNVYIKNLDTEIT 273
Query: 57 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116
+ + F ++G + ++ D ++ + RG+GFV Y+ + A++ LN E +G+ +
Sbjct: 274 EQEFSDLFGQFGEITSLSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLY 332
Query: 117 VSLAQ 121
V AQ
Sbjct: 333 VGRAQ 337
>UNIPROTKB|G3X6K3 [details] [associations]
symbol:LOC534630 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13107
GeneTree:ENSGT00600000084414 OMA:VFSQNRY EMBL:DAAA02072184
RefSeq:NP_001193477.1 UniGene:Bt.88830 Ensembl:ENSBTAT00000008205
GeneID:534630 KEGG:bta:534630 NextBio:20876482 Uniprot:G3X6K3
Length = 330
Score = 144 (55.7 bits), Expect = 1.6e-09, P = 1.6e-09
Identities = 22/72 (30%), Positives = 47/72 (65%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+F+G L + +T + F +YG +V +++D ++G+S+G+ F+CY + A+++
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVWDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97
Query: 106 NGVELEGRAMRV 117
NG++++GR +RV
Sbjct: 98 NGIKIKGRTIRV 109
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 146 (56.5 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVG LSW T E+L++ F +G+++ V+ + ESGRSRG+GFV ++ + L+
Sbjct: 8 KLFVGGLSWETTQENLSRYFCRFGDIIDCVVMKNNESGRSRGFGFVTFADPTNVNHVLQ- 66
Query: 105 LNGVE-LEGRAM 115
NG L+GR +
Sbjct: 67 -NGPHTLDGRTI 77
Score = 119 (46.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 24/80 (30%), Positives = 42/80 (52%)
Query: 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
+K+F+G L +VT L F YG V ++YD E +SRG+GF+ + ++ +E
Sbjct: 96 YKVFLGGLPSNVTETDLRTFFNRYGKVTEVVIMYDQEKKKSRGFGFLSFEEESSVEHVTN 155
Query: 104 SLNGVELEGRAMRVSLAQGR 123
+ L G+ + + A+ R
Sbjct: 156 E-RYINLNGKQVEIKKAEPR 174
>UNIPROTKB|P98179 [details] [associations]
symbol:RBM3 "Putative RNA-binding protein 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0009409 "response to cold" evidence=IEA]
[GO:0035196 "production of miRNAs involved in gene silencing by
miRNA" evidence=IEA] [GO:0043023 "ribosomal large subunit binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISS] [GO:0030425
"dendrite" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0015934
"large ribosomal subunit" evidence=ISS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0030425
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006396
GO:GO:0045727 eggNOG:COG0724 GO:GO:0015934 HOVERGEN:HBG107480
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GO:GO:0035196 EMBL:AF196969
GO:GO:0043023 EMBL:U28686 EMBL:BC006825 IPI:IPI00024320 PIR:G01859
RefSeq:NP_006734.1 UniGene:Hs.301404 ProteinModelPortal:P98179
SMR:P98179 IntAct:P98179 MINT:MINT-5002714 STRING:P98179
PhosphoSite:P98179 DMDM:1710620 PaxDb:P98179 PeptideAtlas:P98179
PRIDE:P98179 DNASU:5935 Ensembl:ENST00000376755
Ensembl:ENST00000376759 GeneID:5935 KEGG:hsa:5935 UCSC:uc004dkf.2
CTD:5935 GeneCards:GC0XP048432 HGNC:HGNC:9900 HPA:HPA003624
MIM:300027 neXtProt:NX_P98179 PharmGKB:PA34265 InParanoid:P98179
KO:K13186 OMA:SDAMRAM PhylomeDB:P98179 ChiTaRS:RBM3 GenomeRNAi:5935
NextBio:23136 ArrayExpress:P98179 Bgee:P98179 CleanEx:HS_RBM3
Genevestigator:P98179 GermOnline:ENSG00000102317 Uniprot:P98179
Length = 157
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVG L+++ ++L F +G + V+ D E+ RSRG+GF+ ++ A+ +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRA 66
Query: 105 LNGVELEGRAMRVSLA 120
+NG L+GR +RV A
Sbjct: 67 MNGESLDGRQIRVDHA 82
>UNIPROTKB|I3L5X7 [details] [associations]
symbol:RBM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 CTD:5935 KO:K13186 OMA:SDAMRAM
EMBL:FP325173 RefSeq:NP_001230348.1 UniGene:Ssc.3311
Ensembl:ENSSSCT00000030983 GeneID:100627807 KEGG:ssc:100627807
Uniprot:I3L5X7
Length = 156
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVG L+++ ++L F +G + V+ D E+ RSRG+GF+ ++ A+ +
Sbjct: 7 KLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASNAMRA 66
Query: 105 LNGVELEGRAMRVSLA 120
+NG L+GR +RV A
Sbjct: 67 MNGESLDGRQIRVDHA 82
>UNIPROTKB|Q83D11 [details] [associations]
symbol:CBU_0935 "RNA binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 27/84 (32%), Positives = 52/84 (61%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
++ + +++VGNL + V L Q F +G + +++ + +GRS+GY FV Y T +
Sbjct: 40 SDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAV 99
Query: 100 TALESLNGVELEGRAMRVSLAQGR 123
AL++ +G +L+GR++ V +A+ R
Sbjct: 100 KALDA-HGKDLQGRSLVVRIAKSR 122
>TIGR_CMR|CBU_0935 [details] [associations]
symbol:CBU_0935 "RNA-binding protein" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR HSSP:Q9V535
RefSeq:NP_819948.1 ProteinModelPortal:Q83D11 GeneID:1208828
KEGG:cbu:CBU_0935 PATRIC:17930577 HOGENOM:HOG000026939 OMA:QVHSANI
ProtClustDB:CLSK914425 BioCyc:CBUR227377:GJ7S-926-MONOMER
Uniprot:Q83D11
Length = 129
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 27/84 (32%), Positives = 52/84 (61%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
++ + +++VGNL + V L Q F +G + +++ + +GRS+GY FV Y T +
Sbjct: 40 SDNNDQIYVGNLPYHVVENDLHQYFSRFGAIESVKIVRNFRTGRSKGYAFVTYVTPKQAV 99
Query: 100 TALESLNGVELEGRAMRVSLAQGR 123
AL++ +G +L+GR++ V +A+ R
Sbjct: 100 KALDA-HGKDLQGRSLVVRIAKSR 122
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 148 (57.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 31/100 (31%), Positives = 61/100 (61%)
Query: 22 RILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 81
++LR F +K + + + A+ ++V N++ +VT E L + F + G + +++ D E
Sbjct: 284 QLLREQFKEKHEEQ-KMIAKVS-NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCD-EK 340
Query: 82 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
G+S+G+GFVC+ST E A+++ +G G+ + V++AQ
Sbjct: 341 GKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Score = 124 (48.7 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 34/102 (33%), Positives = 54/102 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAF 64
+D N IE + G+++RV +S + P + +FV NL SVT L F
Sbjct: 76 QDANLAIEKKNNSLLNGKMIRVMWSVRA-PDARRNGVGN--VFVKNLPESVTNAVLQDMF 132
Query: 65 QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 106
+++GN+V +V E G+SRGYGFV + + A+++LN
Sbjct: 133 KKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Score = 116 (45.9 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 32/120 (26%), Positives = 59/120 (49%)
Query: 2 STVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLT 61
+ ++ N+ I D Y+G+ ++ +D+ KP+ E L++ NL V+ + L
Sbjct: 167 AAIQTLNSTIV-ADKEIYVGKFMKK--TDRVKPE-----EKYTNLYMKNLDADVSEDLLR 218
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ F E+G +V + D E+ RGY FV + + A E++NG + + + V AQ
Sbjct: 219 EKFAEFGKIVSLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQ 277
Score = 114 (45.2 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 26/72 (36%), Positives = 40/72 (55%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L SVT L AF E+ ++ R+ D SGRS YG+ + ++ + A+E
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 106 NGVELEGRAMRV 117
N L G+ +RV
Sbjct: 86 NNSLLNGKMIRV 97
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 148 (57.2 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 41/130 (31%), Positives = 69/130 (53%)
Query: 5 EDCNAVIENLDGREYLGRIL-------RVNFSDKPKPKLPLYAE---TDFK---LFVGNL 51
E+ + N++GRE GR+L RV ++ K + + T ++ L+V NL
Sbjct: 242 EEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNL 301
Query: 52 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111
S+ E L + F YG + A+V+ +G G S+G+GFVC+S+ E A+ +NG +
Sbjct: 302 DDSIDDEKLRKEFSPYGVITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNGRIVG 359
Query: 112 GRAMRVSLAQ 121
+ + V+LAQ
Sbjct: 360 TKPLYVALAQ 369
Score = 137 (53.3 bits), Expect = 2.9e-08, P = 2.9e-08
Identities = 38/124 (30%), Positives = 65/124 (52%)
Query: 3 TVEDCNAVIENLDGREYLGRILRV-NFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTES 59
T E I ++G R + V +F + + ++ L A +F ++V NL V +
Sbjct: 147 THEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQR 206
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L F ++G ++ +V+ D +SG SRG+GFV + E + A+ ++NG E+ GR + V
Sbjct: 207 LQDLFSQFGKMLSVKVMRD-DSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGR 265
Query: 120 AQGR 123
AQ R
Sbjct: 266 AQKR 269
Score = 125 (49.1 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 33/119 (27%), Positives = 62/119 (52%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ G+ +R+ +S + P L + +F+ NL S+ ++L F
Sbjct: 64 DAERALDTMNFEVIKGQPIRIMWSQRD-PGLRKSGVGN--IFIKNLEDSIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ +V+ D E G SRG+GFV + T + A+ ++NG+ L R + V + RR
Sbjct: 121 TFGNILSCKVVCD-EHG-SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRR 177
Score = 109 (43.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L VT L + F G ++ RV D + RS GY ++ + A+ E AL+++
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++G+ +R+ +Q
Sbjct: 73 NFEVIKGQPIRIMWSQ 88
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 150 (57.9 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 37/104 (35%), Positives = 59/104 (56%)
Query: 22 RILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGA-RVLYDG 79
+ R+N++ P+ ++ LFVG+LS S T L FQ+ + N + RV+ D
Sbjct: 232 KYFRLNWASGATLSAPIVQTPEYSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDP 291
Query: 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
SG+SR +GFV ++ ++E + AL +NG GR +RV+LA R
Sbjct: 292 ISGKSRCFGFVRFTEESERQRALIEMNGAWFAGRPLRVALATPR 335
>UNIPROTKB|A6QPJ1 [details] [associations]
symbol:RBM24 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043488 "regulation of mRNA stability" evidence=IEA]
[GO:0010830 "regulation of myotube differentiation" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488
HOGENOM:HOG000276232 GO:GO:0010830 HOVERGEN:HBG108399 CTD:221662
GeneTree:ENSGT00390000002308 OMA:LQADRMQ eggNOG:NOG248750
EMBL:DAAA02055633 EMBL:BC149345 IPI:IPI00711385
RefSeq:NP_001098455.1 UniGene:Bt.111570 SMR:A6QPJ1
Ensembl:ENSBTAT00000038477 GeneID:524220 KEGG:bta:524220
NextBio:20873922 Uniprot:A6QPJ1
Length = 236
Score = 139 (54.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG L + T SL + F+ +G + A V+ D ++G+SRGYGFV + +A E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 105 LNGVELEGRAMRVSLA 120
N + ++GR V+LA
Sbjct: 72 PNPI-IDGRKANVNLA 86
>UNIPROTKB|Q9BX46 [details] [associations]
symbol:RBM24 "RNA-binding protein 24" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0043488
"regulation of mRNA stability" evidence=ISS] [GO:0010830
"regulation of myotube differentiation" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0043488 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0010830 HSSP:Q9H0Z9 HOVERGEN:HBG108399
CTD:221662 EMBL:AK055391 EMBL:AK095016 EMBL:AY547318 EMBL:AL136305
EMBL:BC104810 EMBL:BC104808 IPI:IPI00411370 IPI:IPI00827745
RefSeq:NP_001137413.1 RefSeq:NP_001137414.1 RefSeq:NP_694565.1
UniGene:Hs.741190 ProteinModelPortal:Q9BX46 SMR:Q9BX46
IntAct:Q9BX46 MINT:MINT-2879164 STRING:Q9BX46 PhosphoSite:Q9BX46
DMDM:74761312 PRIDE:Q9BX46 Ensembl:ENST00000318204
Ensembl:ENST00000379052 GeneID:221662 KEGG:hsa:221662
UCSC:uc003nbz.4 UCSC:uc003nca.3 GeneCards:GC06P017281
HGNC:HGNC:21539 neXtProt:NX_Q9BX46 PharmGKB:PA134964569
InParanoid:Q9BX46 OMA:LQADRMQ OrthoDB:EOG4DV5NS PhylomeDB:Q9BX46
GenomeRNAi:221662 NextBio:91409 ArrayExpress:Q9BX46 Bgee:Q9BX46
CleanEx:HS_RBM24 Genevestigator:Q9BX46 Uniprot:Q9BX46
Length = 236
Score = 139 (54.0 bits), Expect = 1.9e-09, P = 1.9e-09
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG L + T SL + F+ +G + A V+ D ++G+SRGYGFV + +A E A +
Sbjct: 12 KIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 71
Query: 105 LNGVELEGRAMRVSLA 120
N + ++GR V+LA
Sbjct: 72 PNPI-IDGRKANVNLA 86
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 142 (55.0 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 27/81 (33%), Positives = 48/81 (59%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A+ KLF+G L+ ++L F +YG +V ++ D E+ +SRG+ FV + + A+ +
Sbjct: 6 ADRPGKLFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAK 65
Query: 100 TALESLNGVELEGRAMRVSLA 120
A +NG L+G+A++V A
Sbjct: 66 DAARDMNGKSLDGKAIKVEQA 86
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 148 (57.2 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 39/132 (29%), Positives = 68/132 (51%)
Query: 5 EDCNAVIENLDGRE------YLGRI---------LRVNFSDKPKPKLPLYAETDFKLFVG 49
ED ++ ++G+E Y+GR L+ F + ++ Y + L+V
Sbjct: 242 EDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVN--LYVK 299
Query: 50 NLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109
NL + E L +AF +G + A+V+ +G GRS+G+GFVC+S+ E A+ +NG
Sbjct: 300 NLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRI 357
Query: 110 LEGRAMRVSLAQ 121
+ + + V+LAQ
Sbjct: 358 VATKPLYVALAQ 369
Score = 134 (52.2 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 35/122 (28%), Positives = 63/122 (51%)
Query: 3 TVEDCNAVIENLDGREYLGRILRVN-FSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTES 59
T E I+ ++G GR + V F + + + L A +F +++ N + E
Sbjct: 147 THEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDER 206
Query: 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119
L F ++G + +V+ D ESG+S+G+GFV + + + A++ +NG EL G+ + V
Sbjct: 207 LKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGR 265
Query: 120 AQ 121
AQ
Sbjct: 266 AQ 267
Score = 129 (50.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 34/120 (28%), Positives = 63/120 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAF 64
+D ++ ++ G+ +R+ +S + P L + +FV NL S+ ++L
Sbjct: 63 KDAEHALDTMNFDVIKGKPVRIMWSQRD-PSLRKSGVGN--IFVKNLDKSINNKALYDTV 119
Query: 65 QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ V+ D E+G S+GYGFV + T E A++ +NG+ L GR + V + R+
Sbjct: 120 SAFGNILSCNVVCD-ENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK 177
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 148 (57.2 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 39/130 (30%), Positives = 68/130 (52%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKP-------KPKLPLYAE---TDFK---LFVGNL 51
ED ++ ++G+E G+++ V + K K K + T ++ L+V NL
Sbjct: 242 EDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNL 301
Query: 52 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111
+ E L + F +G + A+V+ DG GRS+G+GFVC+S+ E A+ +NG +
Sbjct: 302 DDGIDDERLRKEFSPFGTITSAKVMMDG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVA 359
Query: 112 GRAMRVSLAQ 121
+ + V+LAQ
Sbjct: 360 TKPLYVALAQ 369
Score = 146 (56.5 bits), Expect = 3.3e-09, P = 3.3e-09
Identities = 35/120 (29%), Positives = 65/120 (54%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAET-DF-KLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A +F +++ N + + L
Sbjct: 155 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLK 208
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
F +YGN + RV+ D E+G+SRG+GFV + + + A++ +NG E+ G+ + V AQ
Sbjct: 209 DIFSKYGNAMSIRVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQ 267
Score = 138 (53.6 bits), Expect = 2.3e-08, P = 2.3e-08
Identities = 35/119 (29%), Positives = 64/119 (53%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D ++ ++ GR +R+ +S + P L + +F+ NL S+ ++L F
Sbjct: 64 DAERALDTMNFDVIKGRPVRIMWSQRD-PSLRKSGVGN--IFIKNLDKSIDNKALYDTFS 120
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+GN++ +V+ D E+G S+GYGFV + T+ E A+E +NG+ L R + V + R+
Sbjct: 121 AFGNILSCKVVCD-ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 177
Score = 117 (46.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 29/88 (32%), Positives = 46/88 (52%)
Query: 34 PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 93
P P Y L+VG+L VT L + F G ++ RV D + RS GY +V +
Sbjct: 3 PSAPSYPMAS--LYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQ 60
Query: 94 TKAEMETALESLNGVELEGRAMRVSLAQ 121
A+ E AL+++N ++GR +R+ +Q
Sbjct: 61 QPADAERALDTMNFDVIKGRPVRIMWSQ 88
WARNING: HSPs involving 1417 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 125 125 0.00091 102 3 11 22 0.41 31
29 0.39 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1667
No. of states in DFA: 568 (60 KB)
Total size of DFA: 122 KB (2079 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 11.92u 0.09s 12.01t Elapsed: 00:00:01
Total cpu time: 11.94u 0.09s 12.03t Elapsed: 00:00:01
Start: Fri May 10 17:13:03 2013 End: Fri May 10 17:13:04 2013
WARNINGS ISSUED: 2