BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033181
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 273
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/133 (42%), Positives = 81/133 (60%), Gaps = 10/133 (7%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK----------LPLYAETDFKLFVGN 50
MS+ E+ A + +G E GR LRVN P+ + ++ +++VGN
Sbjct: 135 MSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGN 194
Query: 51 LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110
L+W V ++L F E G VV A+V+YD +SGRSRG+GFV YS+ E+ A+ESL+GV+L
Sbjct: 195 LAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDL 254
Query: 111 EGRAMRVSLAQGR 123
GRA+RVS A+ R
Sbjct: 255 NGRAIRVSPAEAR 267
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 102
D K+FVGNL +S + +L + F+ GNV V+YD +GRSRG+GFV S+K E+E A
Sbjct: 86 DLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145
Query: 103 ESLNGVELEGRAMRVS 118
+ NG EL+GRA+RV+
Sbjct: 146 QQFNGYELDGRALRVN 161
>sp|P19683|ROC4_NICSY 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 315
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 83/127 (65%), Gaps = 5/127 (3%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFS----DKPKPKLPLYAETDFKLFVGNLSWSVT 56
MSTVE+ +E + + GR+L VN + ++P+ + P E ++++VGN+ W +
Sbjct: 184 MSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPE-RPPRTFEQSYRIYVGNIPWGID 242
Query: 57 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116
L Q F E+G VV ARV+YD E+GRSRG+GFV +++AEM A+ +L+G L+GR +R
Sbjct: 243 DARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIR 302
Query: 117 VSLAQGR 123
V++A+ R
Sbjct: 303 VNVAEDR 309
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVGNL + V +E L + F++ G V A V+Y+ ++ +SRG+GFV ST E E A+E
Sbjct: 137 KLFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEM 196
Query: 105 LNGVELEGRAMRVSLAQGR 123
N ++ GR + V+ A R
Sbjct: 197 YNRYDVNGRLLTVNKAARR 215
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP31 PE=1 SV=1
Length = 329
Score = 101 bits (252), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 80/127 (62%), Gaps = 5/127 (3%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFS----DKPKPKLPLYAETDFKLFVGNLSWSVT 56
MS+V++ +E + + GR+L VN + +P+ + P E F+++VGNL W V
Sbjct: 198 MSSVDEAETAVEKFNRYDLNGRLLTVNKAAPRGSRPE-RAPRVYEPAFRVYVGNLPWDVD 256
Query: 57 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116
L Q F E+G VV ARV+YD E+GRSRG+GFV S E+ A+ +L+G LEGRA+R
Sbjct: 257 NGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIR 316
Query: 117 VSLAQGR 123
V++A+ R
Sbjct: 317 VNVAEER 323
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 53/81 (65%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVGNL++ V +++L F++ G V A V+Y+ E+ +SRG+GFV S+ E ETA+E
Sbjct: 151 KLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEK 210
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
N +L GR + V+ A R S
Sbjct: 211 FNRYDLNGRLLTVNKAAPRGS 231
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35
MS V++ N I LDG+ GR +RVN +++ P+
Sbjct: 292 MSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326
>sp|P49313|ROC1_NICPL 30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 279
Score = 101 bits (251), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/139 (40%), Positives = 81/139 (58%), Gaps = 16/139 (11%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK----------------LPLYAETDF 44
MS+ E+ A + +G E GR LRVN P+ + ++
Sbjct: 135 MSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSN 194
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+++VGNL+W V ++L F E G VV A+V+YD +SGRSRG+GFV YS+ E+ A+ES
Sbjct: 195 RVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIES 254
Query: 105 LNGVELEGRAMRVSLAQGR 123
L+GV+L GRA+RVS A+ R
Sbjct: 255 LDGVDLNGRAIRVSPAEAR 273
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 53/76 (69%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 102
D K+FVGNL +S + +L + F+ GNV V+YD +GRSRG+GFV S+K E+E A
Sbjct: 86 DLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAAC 145
Query: 103 ESLNGVELEGRAMRVS 118
+ NG EL+GRA+RV+
Sbjct: 146 QQFNGYELDGRALRVN 161
>sp|P19682|ROC3_NICSY 28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 276
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 81/127 (63%), Gaps = 5/127 (3%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFS----DKPKPKLPLYAETDFKLFVGNLSWSVT 56
MSTVE+ + +E + GR+L VN + +P+ + P + ++++VGN+ W +
Sbjct: 145 MSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPE-RAPRTFQPTYRIYVGNIPWDID 203
Query: 57 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116
L Q F E+G VV ARV++D ESGRSRG+GFV S++AEM A+ +L+G L+GR +R
Sbjct: 204 DARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIR 263
Query: 117 VSLAQGR 123
V+ A+ R
Sbjct: 264 VNAAEER 270
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 38/83 (45%), Positives = 52/83 (62%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 102
D KLFVGNL + + +E L Q FQ+ G V A V+Y+ E+ RSRG+GFV ST E + A+
Sbjct: 96 DAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAV 155
Query: 103 ESLNGVELEGRAMRVSLAQGRRS 125
E + +L GR + V+ A R S
Sbjct: 156 ELYSQYDLNGRLLTVNKAAPRGS 178
>sp|P28644|ROC1_SPIOL 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1
SV=1
Length = 233
Score = 100 bits (249), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 81/127 (63%), Gaps = 5/127 (3%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDF----KLFVGNLSWSVT 56
MSTVE+ +E L+G + GR L VN + P+ DF +++VGNL W V
Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQLTVNKA-APRGSPERAPRGDFEPSCRVYVGNLPWDVD 161
Query: 57 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116
T L Q F E+G VV ARV+ D E+GRSRG+GFV S+++E+ A+ +L+G L+GRA+R
Sbjct: 162 TSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVR 221
Query: 117 VSLAQGR 123
V++A+ R
Sbjct: 222 VNVAEER 228
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/81 (48%), Positives = 51/81 (62%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVGNL + V +E L F G V A V+Y+ E+ RSRG+GFV ST E E A+E
Sbjct: 56 KLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVEL 115
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
LNG +++GR + V+ A R S
Sbjct: 116 LNGYDMDGRQLTVNKAAPRGS 136
>sp|Q08937|ROC2_NICSY 29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris
PE=2 SV=1
Length = 291
Score = 99.0 bits (245), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/152 (37%), Positives = 82/152 (53%), Gaps = 29/152 (19%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP----------------------- 37
MST E+ A + +G E GR +RVN P +
Sbjct: 135 MSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSF 194
Query: 38 ------LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVC 91
++ +++VGNLSW V +L + F E GNVV A+V+YD +SGRSRG+GFV
Sbjct: 195 GGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVT 254
Query: 92 YSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
YS+ E+ A++SLNGV+L+GR++RVS A+ R
Sbjct: 255 YSSSKEVNDAIDSLNGVDLDGRSIRVSAAEER 286
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 96
P ++E D KLFVGNL +SV + +L F+ GNV V+YD +GRSRG+GFV STK
Sbjct: 81 PRFSE-DLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKE 139
Query: 97 EMETALESLNGVELEGRAMRVS 118
E+E A + NG E++GRA+RV+
Sbjct: 140 EVEAAEQQFNGYEIDGRAIRVN 161
>sp|P49314|ROC2_NICPL 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana
plumbaginifolia PE=2 SV=1
Length = 292
Score = 98.6 bits (244), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 29/152 (19%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP----------------------- 37
MST E+ A + +G E GR +RVN P +
Sbjct: 136 MSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSF 195
Query: 38 ------LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVC 91
++ +++VGNLSW V +L + F E GNVV A+V+YD +SGRSRG+GFV
Sbjct: 196 GGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVT 255
Query: 92 YSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
YS+ E+ A++SLNG++L+GR++RVS A+ R
Sbjct: 256 YSSAKEVNDAIDSLNGIDLDGRSIRVSAAEER 287
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
Query: 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKA 96
P ++E D KLFVGNL +SV + +L F+ GNV V+YD SGRSRG+GFV STK
Sbjct: 82 PRFSE-DLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKE 140
Query: 97 EMETALESLNGVELEGRAMRVS 118
E+E A + NG E++GRA+RV+
Sbjct: 141 EVEAAEQQFNGYEIDGRAIRVN 162
>sp|P19684|ROC5_NICSY 33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris
PE=1 SV=1
Length = 324
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 79/132 (59%), Gaps = 12/132 (9%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK------------PKLPLYAETDFKLFV 48
M +VE+ I DG + GR ++VNF + P+ + ++ KL+V
Sbjct: 162 MGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYV 221
Query: 49 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108
NLSW++T++ L AF + + A+V+YD SGRSRG+GF+ +S+ M +AL+++N V
Sbjct: 222 ANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEV 281
Query: 109 ELEGRAMRVSLA 120
ELEGR +R+++A
Sbjct: 282 ELEGRPLRLNVA 293
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 48/80 (60%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VGNL +S+T+ L++ F E G V ++YD + RSRG+ FV + E + A+
Sbjct: 115 RLYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRL 174
Query: 105 LNGVELEGRAMRVSLAQGRR 124
+G ++ GR ++V+ + R
Sbjct: 175 FDGSQVGGRTVKVNFPEVPR 194
>sp|P82277|RRP2_SPIOL 30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea
GN=PSRP2 PE=1 SV=1
Length = 260
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/129 (39%), Positives = 81/129 (62%), Gaps = 9/129 (6%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL---------YAETDFKLFVGNL 51
M TVED NAVIE L+ E GR ++VN ++KP + + + E+ +K+++GNL
Sbjct: 132 MKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNL 191
Query: 52 SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111
+ +VT E L F E G V+GA+V + +S G+GFV +S++ E+E A+++LN LE
Sbjct: 192 AKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLE 251
Query: 112 GRAMRVSLA 120
G+ +RV+ A
Sbjct: 252 GQKIRVNKA 260
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 46/77 (59%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VGN+ ++ + L +E+G + A V+YD SGRSR +GFV T + +E
Sbjct: 85 RLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEK 144
Query: 105 LNGVELEGRAMRVSLAQ 121
LN E+ GR ++V++ +
Sbjct: 145 LNDTEIGGRKIKVNITE 161
>sp|Q9ZUU4|ROC1_ARATH Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana
GN=At2g37220 PE=1 SV=1
Length = 289
Score = 95.5 bits (236), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 57/150 (38%), Positives = 80/150 (53%), Gaps = 32/150 (21%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDF---------------- 44
MS+V + A + +G E GR LRVN + P PK E F
Sbjct: 139 MSSVSEVEAAAQQFNGYELDGRPLRVN-AGPPPPKR----EDGFSRGPRSSFGSSGSGYG 193
Query: 45 -----------KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 93
+++VGNLSW V +L F E G VV ARV+YD +SGRS+G+GFV Y
Sbjct: 194 GGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYD 253
Query: 94 TKAEMETALESLNGVELEGRAMRVSLAQGR 123
+ E++ A++SL+G +L+GR +RVS A+ R
Sbjct: 254 SSQEVQNAIKSLDGADLDGRQIRVSEAEAR 283
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 59/91 (64%), Gaps = 1/91 (1%)
Query: 28 FSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY 87
F+D PK ++ D KLFVGNL ++V + L Q F+ GNV V+YD +GRSRG+
Sbjct: 76 FADVAPPKEQSFS-ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGF 134
Query: 88 GFVCYSTKAEMETALESLNGVELEGRAMRVS 118
GFV S+ +E+E A + NG EL+GR +RV+
Sbjct: 135 GFVTMSSVSEVEAAAQQFNGYELDGRPLRVN 165
>sp|Q43349|ROC2_ARATH 29 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana
GN=RBP29 PE=1 SV=2
Length = 342
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
+L+VGNLSW V +L F E G VV ARV+YD +SGRS+G+GFV S+ E++ A+ S
Sbjct: 258 RLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINS 317
Query: 105 LNGVELEGRAMRVSLAQGR 123
LNG +L+GR +RVS A+ R
Sbjct: 318 LNGADLDGRQIRVSEAEAR 336
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 52/77 (67%)
Query: 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
D KLFVGNLS++V + L Q F+ GNV V+YD +GRSRG+GFV ST AE+E A
Sbjct: 97 PDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAA 156
Query: 102 LESLNGVELEGRAMRVS 118
+ NG E EGR +RV+
Sbjct: 157 AQQFNGYEFEGRPLRVN 173
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 62/86 (72%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A+ +++ FVG L W+ +SL AF +YG+V+ ++++ D E+GRSRG+GFV +++ M
Sbjct: 2 ADVEYRCFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMR 61
Query: 100 TALESLNGVELEGRAMRVSLAQGRRS 125
A+E++NG +L+GR + V+ AQ RRS
Sbjct: 62 QAIEAMNGQDLDGRNITVNEAQSRRS 87
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2 PE=2
SV=1
Length = 168
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 60/82 (73%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A+ +++ FVG L+W+ E+L QAF +G V+ ++V+ D E+GRSRG+GFV +S++ M
Sbjct: 4 ADVEYRCFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSML 63
Query: 100 TALESLNGVELEGRAMRVSLAQ 121
A+E++NG EL+GR + V+ AQ
Sbjct: 64 DAIENMNGKELDGRNITVNQAQ 85
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 58/82 (70%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
AE +++ FVG L+W+ ESL QAF ++G++ ++++ D E+GRSRG+GFV + + M
Sbjct: 2 AEVEYRCFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMR 61
Query: 100 TALESLNGVELEGRAMRVSLAQ 121
A+E +NG EL+GR + V+ AQ
Sbjct: 62 DAIEGMNGQELDGRNITVNEAQ 83
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 37/82 (45%), Positives = 60/82 (73%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
A+ +++ FVG L+W+ + ESL AF YG ++ ++V+ D E+GRSRG+GFV +S++ M
Sbjct: 4 ADVEYRCFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSML 63
Query: 100 TALESLNGVELEGRAMRVSLAQ 121
A+E++NG EL+GR + V+ AQ
Sbjct: 64 DAIENMNGKELDGRNITVNQAQ 85
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana GN=RBG8
PE=1 SV=1
Length = 169
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 57/82 (69%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+E +++ FVG L+W+ E L + F ++G+V+ ++++ D ESGRSRG+GFV + + M
Sbjct: 2 SEVEYRCFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMR 61
Query: 100 TALESLNGVELEGRAMRVSLAQ 121
A+E +NG EL+GR + V+ AQ
Sbjct: 62 DAIEEMNGKELDGRVITVNEAQ 83
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 82.0 bits (201), Expect = 1e-15, Method: Composition-based stats.
Identities = 36/118 (30%), Positives = 76/118 (64%), Gaps = 3/118 (2%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D N ++ L+G++ I+++N++ + + ++ F LFVG+L+ +V E+L AF+
Sbjct: 127 DANIALQTLNGKQIENNIVKINWAFQSQQS---SSDDTFNLFVGDLNVNVDDETLRNAFK 183
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
++ + + V++D ++G SRGYGFV ++++ + + A++S+ G +L GR +R++ A R
Sbjct: 184 DFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
+D L+VGNL ++T + L Q FQ G + +++ D ++ ++ Y FV Y + A
Sbjct: 73 SDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KNNKNVNYAFVEYHQSHDANIA 131
Query: 102 LESLNGVELEGRAMRVSLA 120
L++LNG ++E ++++ A
Sbjct: 132 LQTLNGKQIENNIVKINWA 150
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 52/81 (64%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVG LSW SL QAF +G V A V+ D E+GRSRG+GFV +S + A++
Sbjct: 36 KLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCEDSANNAIKE 95
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
++G EL GR +RV+LA R S
Sbjct: 96 MDGKELNGRQIRVNLATERSS 116
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana GN=RBG7
PE=1 SV=1
Length = 176
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 58/81 (71%)
Query: 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 100
+ +++ FVG L+W+ +L AF +YG+V+ ++++ D E+GRSRG+GFV + + M+
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKD 64
Query: 101 ALESLNGVELEGRAMRVSLAQ 121
A+E +NG +L+GR++ V+ AQ
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLF+G LSW SL AF +G+VV A+V+ D E+GRSRG+GFV ++ + A+
Sbjct: 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95
Query: 105 LNGVELEGRAMRVSLAQGRRS 125
++G EL GR +RV+ A R S
Sbjct: 96 MDGKELNGRHIRVNPANDRPS 116
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 57/81 (70%)
Query: 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 100
+ +++ FVG L+W+ +L AF +YG V+ ++++ D E+GRSRG+GFV + + M+
Sbjct: 5 DVEYRCFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKD 64
Query: 101 ALESLNGVELEGRAMRVSLAQ 121
A+E +NG +L+GR++ V+ AQ
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA 73
++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF +G + A
Sbjct: 68 MNGRKILGKEVKVNWATTPSSQKKD-TSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 126
Query: 74 RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
RV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 127 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 173
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 55/128 (42%), Gaps = 23/128 (17%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK-----------------LFV 48
D I ++ G+ GR +R N++ + P E + K ++
Sbjct: 150 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYC 209
Query: 49 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108
G ++ +T + + Q F +G ++ RV + +GY FV +ST A+ S+NG
Sbjct: 210 GGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT 263
Query: 109 ELEGRAMR 116
+EG ++
Sbjct: 264 TIEGHVVK 271
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VGNLS VT + Q F + G +++ + S Y FV + + AL ++
Sbjct: 11 LYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAM 68
Query: 106 NGVELEGRAMRVSLA 120
NG ++ G+ ++V+ A
Sbjct: 69 NGRKILGKEVKVNWA 83
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 57/81 (70%)
Query: 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 100
+ +++ FVG L+W+ SL AF ++G +V ++++ D E+GRSRG+GFV + + M+
Sbjct: 5 DVEYRCFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKD 64
Query: 101 ALESLNGVELEGRAMRVSLAQ 121
A+E +NG +L+GR++ V+ AQ
Sbjct: 65 AIEGMNGQDLDGRSITVNEAQ 85
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 39/107 (36%), Positives = 64/107 (59%), Gaps = 1/107 (0%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA 73
++GR+ LG+ ++VN++ P + F +FVG+LS +TTE + AF +G + A
Sbjct: 85 MNGRKILGKEVKVNWATTPSSQKK-DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDA 143
Query: 74 RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
RV+ D +G+S+GYGFV + K + E A+ + G L GR +R + A
Sbjct: 144 RVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWA 190
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 56/128 (43%), Gaps = 23/128 (17%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK-----------------LFV 48
D I ++ G+ GR +R N++ + P ET+ K ++
Sbjct: 167 DAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYC 226
Query: 49 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108
G ++ +T + + Q F +G ++ RV + +GY FV +ST A+ S+NG
Sbjct: 227 GGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGT 280
Query: 109 ELEGRAMR 116
+EG ++
Sbjct: 281 TIEGHVVK 288
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 57/79 (72%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLF+G +++S+ +SL +AF +YG VV RV+ D E+GRSRG+GFV +++ +A+++
Sbjct: 41 KLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQA 100
Query: 105 LNGVELEGRAMRVSLAQGR 123
L+G +L GR ++V+ A R
Sbjct: 101 LDGRDLHGRVVKVNYANDR 119
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10 PE=2
SV=1
Length = 169
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 56/82 (68%)
Query: 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99
+E +++ FVG L+W+ L + F ++G V+ ++++ D E+GRSRG+GFV + + M+
Sbjct: 2 SEVEYRCFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMK 61
Query: 100 TALESLNGVELEGRAMRVSLAQ 121
A++ +NG EL+GR + V+ AQ
Sbjct: 62 DAIDEMNGKELDGRTITVNEAQ 83
>sp|Q9SIX3|RBG1_ARATH Probable glycine-rich RNA-binding protein 1 OS=Arabidopsis thaliana
GN=RBG1 PE=2 SV=2
Length = 149
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 57/87 (65%), Gaps = 3/87 (3%)
Query: 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 98
YA+ +++ FVG L+W+ +S+ + F E+G V ++++ D E+GRS+G+ FV + + M
Sbjct: 3 YADNEYRCFVGGLAWATDEQSIERCFNEFGEVFDSKIIIDRETGRSKGFRFVTFKDEDSM 62
Query: 99 ETALESLNGVELEGRAMRVSLAQGRRS 125
TA++ +NG EL+GR + AQ R S
Sbjct: 63 RTAIDRMNGQELDGRNI---TAQARGS 86
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 10/117 (8%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLP----------LYAETDFKLFVGNLSWSVTTESLTQA 63
++GR+ +G+ ++VN++ P + ++ F +FVG+LS +TTE + A
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 64 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
F +G + ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R + A
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDK--PKPKLPLYAET---------------DFKLFV 48
D I+ + G+ GR +R N++ + P PK + T + ++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVSQSSPNNCTVYC 218
Query: 49 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108
G ++ +T + + Q F +G ++ RV D +GY FV +S+ A+ S+NG
Sbjct: 219 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVSVNGT 272
Query: 109 ELEGRAMR 116
+EG ++
Sbjct: 273 TIEGHVVK 280
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VGNLS VT + Q F + G +++ D + + Y FV + AL ++
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGVELEGRAMRVSLA 120
NG ++ G+ ++V+ A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 10/117 (8%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLP----------LYAETDFKLFVGNLSWSVTTESLTQA 63
++GR+ +G+ ++VN++ P + ++ F +FVG+LS +TTE + A
Sbjct: 66 MNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAA 125
Query: 64 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120
F +G + ARV+ D +G+S+GYGFV + K + E A++ + G L GR +R + A
Sbjct: 126 FAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 182
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 23/128 (17%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDK--PKPKLPLYAET---------------DFKLFV 48
D I+ + G+ GR +R N++ + P PK + T + ++
Sbjct: 159 DAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYESNTKQLSYDEVVNQSSPSNCTVYC 218
Query: 49 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108
G ++ +T + + Q F +G ++ RV D +GY FV +++ A+ S+NG
Sbjct: 219 GGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGT 272
Query: 109 ELEGRAMR 116
+EG ++
Sbjct: 273 TIEGHVVK 280
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VGNLS VT + Q F + G +++ D + + Y FV + AL ++
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 106 NGVELEGRAMRVSLA 120
NG ++ G+ ++V+ A
Sbjct: 67 NGRKIMGKEVKVNWA 81
>sp|P41891|GAR2_SCHPO Protein gar2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gar2 PE=1 SV=2
Length = 500
Score = 72.0 bits (175), Expect = 9e-13, Method: Composition-based stats.
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 2/79 (2%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG LSW+V + L Q F+EYG +VGARV+ DG+SGRS+GYG+V + T E A +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFET-PEAAKAAVAA 323
Query: 106 NGV-ELEGRAMRVSLAQGR 123
NG E++GR + + L+ R
Sbjct: 324 NGTKEIDGRMVNLDLSNPR 342
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 15/120 (12%)
Query: 17 REYLGRILRVNFSDKPKPKLPL-------------YAETDFKLFVGNLSWSVTTESLTQA 63
+E GR++ ++ S+ P+P P +E +FVGNLS++ T + L+ A
Sbjct: 327 KEIDGRMVNLDLSN-PRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLSFNATEDDLSTA 385
Query: 64 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123
F G++ R+ D +SGR +G+G+V +S + +E +NG + GR R+ + R
Sbjct: 386 FGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVE-MNGHFIAGRPCRLDFSTPR 444
>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor subunit 2 tau variant OS=Mus musculus
GN=Cstf2t PE=1 SV=2
Length = 632
Score = 71.2 bits (173), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 51/78 (65%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG LSWS+ E L + F+ G V+GARV+Y+ + RSRGYG+V + K+ E A++ +
Sbjct: 170 IFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEM 229
Query: 106 NGVELEGRAMRVSLAQGR 123
G E++GR + ++ +
Sbjct: 230 QGKEIDGRPINCDMSTSK 247
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 64/121 (52%), Gaps = 8/121 (6%)
Query: 11 IENLDGREYLGRILRVNFS--------DKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQ 62
I+ + G+E GR + + S D+ K +E LF+GNLS++ +++ +
Sbjct: 226 IQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFE 285
Query: 63 AFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122
F ++G VV R+ E+ + +G+G+V +S + + AL++L G ++ R +R+ +
Sbjct: 286 LFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSP 345
Query: 123 R 123
R
Sbjct: 346 R 346
>sp|Q9H0L4|CSTFT_HUMAN Cleavage stimulation factor subunit 2 tau variant OS=Homo sapiens
GN=CSTF2T PE=1 SV=1
Length = 616
Score = 70.9 bits (172), Expect = 2e-12, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 49/80 (61%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G+VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>sp|Q44554|RBPB_NOSS1 Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpB PE=3 SV=3
Length = 103
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 52/78 (66%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
++VGNLS+ VT ESL F EYG+V ++ D E+GR RG+GFV + AE A+E+L
Sbjct: 3 IYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEAL 62
Query: 106 NGVELEGRAMRVSLAQGR 123
+G E GR ++V+ A+ R
Sbjct: 63 DGAEWMGRDLKVNKAKPR 80
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35
M + + A IE LDG E++GR L+VN K KP+
Sbjct: 49 MGSDAEETAAIEALDGAEWMGRDLKVN---KAKPR 80
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
++VGNLS+SVT + LT+ F EYG+V ++ D E+GR RG+GFV + A + A++
Sbjct: 1 MSIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQ 60
Query: 104 SLNGVELEGRAMRVSLAQGR 123
+L+G E GR ++V+ A+ R
Sbjct: 61 ALDGAEWMGRVLKVNKARPR 80
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 5/34 (14%)
Query: 2 STVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35
S ED A I+ LDG E++GR+L+VN K +P+
Sbjct: 52 SAAED--AAIQALDGAEWMGRVLKVN---KARPR 80
>sp|Q8HXM1|CSTF2_BOVIN Cleavage stimulation factor subunit 2 OS=Bos taurus GN=CSTF2 PE=2
SV=1
Length = 572
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 104 SLNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 310 QLNGFELAGRPMKV 323
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 104 SLNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 310 QLNGFELAGRPMKV 323
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
+L+VG+L +++T + L F+ +G + +++ D E+GRS+GYGF+ +S + ALE
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 104 SLNGVELEGRAMRV 117
LNG EL GR M+V
Sbjct: 310 QLNGFELAGRPMKV 323
>sp|Q5RDA3|CSTF2_PONAB Cleavage stimulation factor subunit 2 OS=Pongo abelii GN=CSTF2 PE=2
SV=1
Length = 577
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>sp|P33240|CSTF2_HUMAN Cleavage stimulation factor subunit 2 OS=Homo sapiens GN=CSTF2 PE=1
SV=1
Length = 577
Score = 69.7 bits (169), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>sp|Q8BIQ5|CSTF2_MOUSE Cleavage stimulation factor subunit 2 OS=Mus musculus GN=Cstf2 PE=1
SV=2
Length = 580
Score = 69.3 bits (168), Expect = 6e-12, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 48/80 (60%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVGN+ + T E L F E G VV R++YD E+G+ +GYGF Y + +A+ +L
Sbjct: 18 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 77
Query: 106 NGVELEGRAMRVSLAQGRRS 125
NG E GRA+RV A ++
Sbjct: 78 NGREFSGRALRVDNAASEKN 97
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 52/76 (68%), Gaps = 1/76 (1%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
K+FVG +S+S L +AF +YG VV A+++ D E+GRSRG+ FV +++ E A++
Sbjct: 35 KIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAMQ- 93
Query: 105 LNGVELEGRAMRVSLA 120
L+G +L GR +RV+ A
Sbjct: 94 LDGQDLHGRRIRVNYA 109
>sp|Q28IQ9|CIRBP_XENTR Cold-inducible RNA-binding protein OS=Xenopus tropicalis GN=cirbp
PE=2 SV=1
Length = 166
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 48/76 (63%)
Query: 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104
KLFVG L++ T ESL Q F +YG V V+ D ES RSRG+GFV + + + A+ +
Sbjct: 7 KLFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMA 66
Query: 105 LNGVELEGRAMRVSLA 120
+NG ++GR +RV A
Sbjct: 67 MNGKSVDGRQIRVDQA 82
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 7/111 (6%)
Query: 14 LDGREYLGRILRVNFSDKPKPKLPLYAET-------DFKLFVGNLSWSVTTESLTQAFQE 66
L G+ LG + V S K +L A +L+VG+L +++T + L F+
Sbjct: 226 LTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEP 285
Query: 67 YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117
+G + ++ D ++GRS+GYGF+ +S ALE LNG EL GR MRV
Sbjct: 286 FGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRV 336
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 67.4 bits (163), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 15/127 (11%)
Query: 8 NAVIENLDGREYLGRILRVNFSDKPKPKLP----LYAETDFK---------LFVGNLSWS 54
NAV E ++ +E G+ L V + K + +L LY T + LFV NL S
Sbjct: 294 NAVKE-MNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDS 352
Query: 55 VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114
+ +E L + F+ +G + ARV+ D ++G+S+G+GFVC+S+ E A+ +N ++G+
Sbjct: 353 IDSEKLEEEFKPFGTITSARVMVD-DAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKP 411
Query: 115 MRVSLAQ 121
+ V+LAQ
Sbjct: 412 LYVALAQ 418
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
++V NL+ V + F+ +G V + D E G+SRG+GFV + A++ +
Sbjct: 241 VYVKNLAPEVDNAKFEEIFKPFGPVTSVHLETDQE-GKSRGFGFVNFENHESALNAVKEM 299
Query: 106 NGVELEGRAMRVSLAQGRR 124
N E++G+ + V AQ +R
Sbjct: 300 NDKEIDGQKLYVGRAQKKR 318
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG L+ SV L + F G V RV D + +S GY +V + A+ A+E L
Sbjct: 60 LYVGELNPSVNEALLFEIFSPIGQVSSIRVCRDAVTKKSLGYAYVNFHKHADGSRAIEEL 119
Query: 106 NGVELEGRAMRVSLAQ 121
N ++GR R+ +Q
Sbjct: 120 NYSLVDGRPCRIMWSQ 135
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 35/119 (29%), Positives = 59/119 (49%), Gaps = 4/119 (3%)
Query: 6 DCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65
D + IE L+ GR R+ +S + L D +F+ NL ++ ++L F
Sbjct: 111 DGSRAIEELNYSLVDGRPCRIMWSQRDPS---LRRNGDGNIFIKNLHPAIDNKALHDTFS 167
Query: 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124
+G ++ +V D E G+S+ +GFV Y T E A+E++NG+ L R + V +R
Sbjct: 168 AFGRILSCKVATD-ELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKR 225
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 34/84 (40%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 43 DFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETA 101
D +FVG+LS V+ L + F E Y +V A+V+ D +GRS+GYGFV + + E A
Sbjct: 196 DLSIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKA 255
Query: 102 LESLNGVELEGRAMRVSLAQGRRS 125
+ +NGV+ RAMR+ A R++
Sbjct: 256 MTEMNGVKCSSRAMRIGPATPRKT 279
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+FVG L SVT E L Q F E+G +V ++ +G GFV + + E ALE L
Sbjct: 306 IFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKL 359
Query: 106 NGVELEGRAMRVS 118
NG + + +R+S
Sbjct: 360 NGTVIGKQTVRLS 372
Score = 29.3 bits (64), Expect = 6.5, Method: Composition-based stats.
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 46 LFVGNLSWSVTTESLTQAFQ--EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103
++VG+L + L +F + +V +V+ + +G S GYGFV + + + L
Sbjct: 103 IWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVLR 162
Query: 104 SLNGVEL 110
NG +
Sbjct: 163 EFNGTTM 169
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
++VGNLS+ V+ LT F EYG+V ++ D E+GR RG+GFV AE A+E+L
Sbjct: 3 IYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEAL 62
Query: 106 NGVELEGRAMRVSLAQGR 123
+G E GR ++V+ A+ R
Sbjct: 63 DGAEWMGRDLKVNKAKPR 80
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
Query: 9 AVIENLDGREYLGRILRVNFSDKPKPK 35
A IE LDG E++GR L+VN K KP+
Sbjct: 57 AAIEALDGAEWMGRDLKVN---KAKPR 80
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 21/133 (15%)
Query: 5 EDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFK----------------LFV 48
ED N +E ++G+E G+I+ F + + K+ AE K L++
Sbjct: 242 EDANKAVEEMNGKEISGKII---FVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYI 298
Query: 49 GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108
NL ++ E L + F +G++ A+V+ E GRS+G+GFVC+S+ E A+ +NG
Sbjct: 299 KNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGR 356
Query: 109 ELEGRAMRVSLAQ 121
+ + + V+LAQ
Sbjct: 357 IVGSKPLYVALAQ 369
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 64/122 (52%), Gaps = 9/122 (7%)
Query: 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETD--FKLFVGNLSWSVTTESLT 61
+E N ++ N D + ++GR F + + + L A+ +++ N V ESL
Sbjct: 155 IEKMNGMLLN-DRKVFVGR-----FKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLK 208
Query: 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121
+ F ++G + +V+ D +G+S+G+GFV Y + A+E +NG E+ G+ + V AQ
Sbjct: 209 ELFSQFGKTLSVKVMRD-PNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQ 267
Query: 122 GR 123
+
Sbjct: 268 KK 269
Score = 48.9 bits (115), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
+F+ NL S+ ++L F +GN++ +V+ D E+G S+GY FV + T+ + A+E +
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD-ENG-SKGYAFVHFETQEAADKAIEKM 158
Query: 106 NGVELEGRAMRVSLAQGRR 124
NG+ L R + V + R+
Sbjct: 159 NGMLLNDRKVFVGRFKSRK 177
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 43/76 (56%)
Query: 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105
L+VG+L VT L + F G V+ RV D + RS GY +V + A+ E AL+++
Sbjct: 13 LYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 106 NGVELEGRAMRVSLAQ 121
N ++G+ +R+ +Q
Sbjct: 73 NFDVIKGKPIRIMWSQ 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,745,118
Number of Sequences: 539616
Number of extensions: 1659760
Number of successful extensions: 6279
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 4573
Number of HSP's gapped (non-prelim): 1694
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)