Query 033181
Match_columns 125
No_of_seqs 108 out of 1787
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 10:48:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 1.3E-24 2.8E-29 146.1 14.5 118 1-123 156-275 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 7.1E-24 1.5E-28 143.7 16.0 79 45-123 271-349 (352)
3 TIGR01645 half-pint poly-U bin 99.9 9.9E-24 2.2E-28 149.1 14.9 123 1-123 156-284 (612)
4 KOG0148 Apoptosis-promoting RN 99.9 9.8E-23 2.1E-27 129.3 13.1 117 1-123 111-238 (321)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 1.7E-21 3.7E-26 132.1 14.8 118 1-123 52-171 (352)
6 TIGR01628 PABP-1234 polyadenyl 99.9 1.6E-21 3.5E-26 139.2 14.0 122 1-123 226-364 (562)
7 TIGR01622 SF-CC1 splicing fact 99.9 4.6E-21 1E-25 133.9 15.5 120 1-121 138-264 (457)
8 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.5E-21 9.8E-26 135.5 15.3 121 1-122 230-374 (509)
9 KOG0145 RNA-binding protein EL 99.9 1.3E-21 2.7E-26 124.1 8.5 117 1-122 90-208 (360)
10 PLN03134 glycine-rich RNA-bind 99.9 1.2E-20 2.6E-25 113.1 12.2 85 40-124 31-115 (144)
11 TIGR01648 hnRNP-R-Q heterogene 99.9 1.3E-20 2.9E-25 133.1 14.3 115 1-123 189-307 (578)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.9 1.7E-20 3.8E-25 131.7 14.2 121 1-123 320-480 (481)
13 KOG0131 Splicing factor 3b, su 99.8 6.2E-21 1.3E-25 114.9 7.3 119 1-123 58-177 (203)
14 TIGR01628 PABP-1234 polyadenyl 99.8 8.6E-20 1.9E-24 130.4 14.5 122 1-123 136-261 (562)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 4.6E-19 1E-23 124.5 15.1 119 1-123 45-174 (481)
16 KOG0144 RNA-binding protein CU 99.8 4.9E-20 1.1E-24 123.5 7.8 120 1-125 83-208 (510)
17 KOG0123 Polyadenylate-binding 99.8 4.9E-19 1.1E-23 120.0 12.5 110 1-123 44-153 (369)
18 TIGR01648 hnRNP-R-Q heterogene 99.8 9.4E-19 2E-23 123.8 12.6 117 4-121 19-136 (578)
19 KOG0127 Nucleolar protein fibr 99.8 1E-18 2.3E-23 120.2 11.2 122 1-123 54-196 (678)
20 PF00076 RRM_1: RNA recognitio 99.8 3.9E-18 8.4E-23 90.5 10.2 70 46-116 1-70 (70)
21 KOG0145 RNA-binding protein EL 99.8 1.3E-17 2.8E-22 106.0 13.6 123 1-123 176-358 (360)
22 KOG0117 Heterogeneous nuclear 99.8 2.5E-18 5.4E-23 115.8 9.9 115 1-123 215-331 (506)
23 KOG0122 Translation initiation 99.8 4.3E-18 9.3E-23 106.9 9.8 82 42-123 188-269 (270)
24 TIGR01659 sex-lethal sex-letha 99.8 6.1E-18 1.3E-22 114.1 10.7 85 39-123 103-187 (346)
25 TIGR01642 U2AF_lg U2 snRNP aux 99.8 5E-17 1.1E-21 115.0 14.3 122 1-122 344-501 (509)
26 KOG0121 Nuclear cap-binding pr 99.8 5.6E-18 1.2E-22 96.9 7.1 81 41-121 34-114 (153)
27 KOG0110 RNA-binding protein (R 99.7 7.7E-18 1.7E-22 118.6 8.4 123 1-123 567-693 (725)
28 KOG0117 Heterogeneous nuclear 99.7 6.3E-17 1.4E-21 109.1 12.3 119 4-122 44-163 (506)
29 PF14259 RRM_6: RNA recognitio 99.7 1.2E-16 2.6E-21 84.8 10.4 70 46-116 1-70 (70)
30 KOG0148 Apoptosis-promoting RN 99.7 2.7E-17 6E-22 104.8 8.6 102 23-124 42-143 (321)
31 KOG0125 Ataxin 2-binding prote 99.7 3.4E-17 7.4E-22 106.7 9.0 79 43-123 96-174 (376)
32 KOG0149 Predicted RNA-binding 99.7 2.5E-17 5.5E-22 103.0 7.3 80 41-121 10-89 (247)
33 KOG0107 Alternative splicing f 99.7 7E-17 1.5E-21 97.0 7.7 77 42-123 9-85 (195)
34 KOG0127 Nucleolar protein fibr 99.7 6.2E-16 1.4E-20 106.7 12.3 81 44-124 293-379 (678)
35 TIGR01645 half-pint poly-U bin 99.7 3.3E-16 7.2E-21 111.4 10.2 80 42-121 106-185 (612)
36 KOG0114 Predicted RNA-binding 99.7 7.6E-16 1.6E-20 85.2 9.3 81 39-122 14-94 (124)
37 KOG0109 RNA-binding protein LA 99.7 2.1E-16 4.5E-21 101.8 7.4 108 2-124 44-151 (346)
38 PLN03120 nucleic acid binding 99.7 9.6E-16 2.1E-20 98.4 10.2 75 43-121 4-78 (260)
39 KOG0124 Polypyrimidine tract-b 99.7 3.2E-16 7E-21 103.9 7.3 120 1-120 162-287 (544)
40 smart00362 RRM_2 RNA recogniti 99.6 4.5E-15 9.7E-20 78.4 9.3 72 45-118 1-72 (72)
41 KOG0111 Cyclophilin-type pepti 99.6 3.1E-16 6.7E-21 97.6 4.4 83 42-124 9-91 (298)
42 KOG4207 Predicted splicing fac 99.6 1.6E-15 3.4E-20 93.6 6.6 83 39-121 9-91 (256)
43 TIGR01622 SF-CC1 splicing fact 99.6 1.3E-14 2.7E-19 101.7 12.0 81 41-122 87-167 (457)
44 smart00360 RRM RNA recognition 99.6 9E-15 2E-19 77.0 8.4 71 48-118 1-71 (71)
45 PLN03121 nucleic acid binding 99.6 2.2E-14 4.7E-19 91.0 10.5 76 42-121 4-79 (243)
46 PLN03213 repressor of silencin 99.6 7.4E-15 1.6E-19 100.8 9.0 78 42-123 9-88 (759)
47 KOG0113 U1 small nuclear ribon 99.6 2.4E-14 5.2E-19 92.5 10.6 83 41-123 99-181 (335)
48 cd00590 RRM RRM (RNA recogniti 99.6 6.8E-14 1.5E-18 74.2 10.0 74 45-119 1-74 (74)
49 KOG0108 mRNA cleavage and poly 99.6 1E-14 2.2E-19 100.3 8.2 81 44-124 19-99 (435)
50 KOG0105 Alternative splicing f 99.6 1.2E-14 2.5E-19 88.5 6.9 81 41-124 4-84 (241)
51 KOG0130 RNA-binding protein RB 99.6 1.3E-14 2.7E-19 84.1 6.7 81 41-121 70-150 (170)
52 KOG0126 Predicted RNA-binding 99.6 7.7E-16 1.7E-20 93.2 1.4 79 42-120 34-112 (219)
53 KOG0147 Transcriptional coacti 99.6 6.6E-15 1.4E-19 101.5 6.1 120 1-121 228-356 (549)
54 KOG0131 Splicing factor 3b, su 99.6 1.3E-14 2.9E-19 87.8 6.5 81 41-121 7-87 (203)
55 KOG0144 RNA-binding protein CU 99.6 2E-14 4.4E-19 96.9 8.0 85 40-124 31-118 (510)
56 COG0724 RNA-binding proteins ( 99.6 6.4E-14 1.4E-18 91.5 10.1 79 43-121 115-193 (306)
57 PF13893 RRM_5: RNA recognitio 99.5 8.4E-14 1.8E-18 70.7 8.0 56 60-120 1-56 (56)
58 KOG0123 Polyadenylate-binding 99.5 1.1E-13 2.4E-18 94.2 9.5 121 1-122 122-245 (369)
59 KOG0146 RNA-binding protein ET 99.5 2.3E-14 4.9E-19 91.7 5.0 85 40-124 282-366 (371)
60 smart00361 RRM_1 RNA recogniti 99.5 5.2E-13 1.1E-17 70.8 8.1 62 57-118 2-70 (70)
61 KOG4206 Spliceosomal protein s 99.5 3.6E-13 7.8E-18 84.1 8.0 81 41-124 7-91 (221)
62 KOG0110 RNA-binding protein (R 99.5 7.3E-13 1.6E-17 94.0 9.5 121 1-121 428-596 (725)
63 KOG0124 Polypyrimidine tract-b 99.4 2.2E-13 4.9E-18 90.6 4.8 76 44-119 114-189 (544)
64 KOG1190 Polypyrimidine tract-b 99.4 3.4E-12 7.4E-17 85.9 10.2 119 1-123 342-491 (492)
65 KOG0153 Predicted RNA-binding 99.4 3E-12 6.4E-17 84.5 8.9 82 37-124 222-304 (377)
66 KOG0109 RNA-binding protein LA 99.4 8.3E-13 1.8E-17 85.4 6.0 71 45-123 4-74 (346)
67 KOG4206 Spliceosomal protein s 99.4 1E-11 2.2E-16 77.8 9.9 116 1-121 59-220 (221)
68 KOG0415 Predicted peptidyl pro 99.4 3.3E-12 7.1E-17 84.8 7.1 83 40-122 236-318 (479)
69 KOG0132 RNA polymerase II C-te 99.3 4.9E-12 1.1E-16 90.8 7.6 75 43-123 421-495 (894)
70 KOG4208 Nucleolar RNA-binding 99.3 1.3E-11 2.8E-16 76.3 8.2 84 39-122 45-129 (214)
71 KOG0146 RNA-binding protein ET 99.3 7.4E-12 1.6E-16 80.4 6.5 98 21-124 2-102 (371)
72 KOG4205 RNA-binding protein mu 99.3 7.2E-12 1.6E-16 83.2 6.5 121 1-123 55-176 (311)
73 KOG4212 RNA-binding protein hn 99.3 1.6E-11 3.5E-16 83.5 8.2 80 41-121 42-122 (608)
74 PF04059 RRM_2: RNA recognitio 99.3 1.2E-10 2.7E-15 64.9 9.1 78 44-121 2-85 (97)
75 KOG0105 Alternative splicing f 99.3 1.1E-10 2.3E-15 71.4 9.2 103 1-110 52-175 (241)
76 KOG0106 Alternative splicing f 99.2 2.8E-11 6E-16 76.2 5.0 112 1-120 42-168 (216)
77 KOG1548 Transcription elongati 99.2 5.3E-10 1.2E-14 74.0 11.1 118 2-123 191-352 (382)
78 KOG4212 RNA-binding protein hn 99.2 6.6E-11 1.4E-15 80.6 6.9 75 41-120 534-608 (608)
79 KOG1190 Polypyrimidine tract-b 99.2 2.6E-09 5.5E-14 72.4 12.8 116 1-121 195-371 (492)
80 KOG4211 Splicing factor hnRNP- 99.1 1.4E-09 3E-14 75.0 10.3 116 1-119 56-178 (510)
81 KOG0120 Splicing factor U2AF, 99.1 6.1E-10 1.3E-14 77.8 8.3 122 1-122 338-491 (500)
82 KOG0533 RRM motif-containing p 99.1 1E-09 2.2E-14 70.6 8.3 81 41-122 81-161 (243)
83 KOG1456 Heterogeneous nuclear 99.1 7.5E-09 1.6E-13 69.6 12.5 76 42-122 286-362 (494)
84 KOG1457 RNA binding protein (c 99.1 3E-09 6.5E-14 66.9 9.0 81 43-123 34-118 (284)
85 KOG1456 Heterogeneous nuclear 99.0 2E-09 4.4E-14 72.2 8.5 119 1-124 74-200 (494)
86 KOG0120 Splicing factor U2AF, 99.0 4.1E-10 8.8E-15 78.7 5.4 122 1-123 230-369 (500)
87 KOG0226 RNA-binding proteins [ 99.0 8.8E-10 1.9E-14 70.4 6.3 106 15-120 161-267 (290)
88 KOG4205 RNA-binding protein mu 99.0 6.5E-10 1.4E-14 74.0 4.7 81 42-123 5-85 (311)
89 KOG4661 Hsp27-ERE-TATA-binding 99.0 2.6E-09 5.7E-14 75.3 7.5 79 43-121 405-483 (940)
90 KOG0116 RasGAP SH3 binding pro 98.9 4.5E-09 9.7E-14 72.5 7.6 79 44-123 289-367 (419)
91 KOG1457 RNA binding protein (c 98.9 1.2E-08 2.6E-13 64.3 8.2 63 44-110 211-273 (284)
92 KOG1548 Transcription elongati 98.9 1.8E-08 3.9E-13 67.0 8.9 81 40-121 131-219 (382)
93 KOG4660 Protein Mei2, essentia 98.9 2.2E-09 4.9E-14 74.9 4.2 72 41-117 73-144 (549)
94 KOG0147 Transcriptional coacti 98.8 4.8E-08 1E-12 68.3 9.0 58 58-120 468-525 (549)
95 KOG0151 Predicted splicing reg 98.8 2.8E-08 6E-13 71.5 7.7 85 37-121 168-255 (877)
96 KOG0106 Alternative splicing f 98.8 7.8E-09 1.7E-13 65.3 4.2 71 45-123 3-73 (216)
97 KOG4209 Splicing factor RNPS1, 98.7 4.2E-08 9E-13 63.2 6.1 80 41-121 99-178 (231)
98 PF11608 Limkain-b1: Limkain b 98.7 1.6E-07 3.4E-12 50.5 6.2 69 44-122 3-76 (90)
99 KOG4211 Splicing factor hnRNP- 98.6 5.3E-07 1.1E-11 62.6 8.7 77 41-121 8-84 (510)
100 KOG1365 RNA-binding protein Fu 98.6 5E-08 1.1E-12 65.9 3.3 118 1-120 213-359 (508)
101 KOG4454 RNA binding protein (R 98.5 4.7E-08 1E-12 61.4 1.9 79 41-121 7-85 (267)
102 PF08777 RRM_3: RNA binding mo 98.5 5.4E-07 1.2E-11 51.3 5.3 69 44-118 2-75 (105)
103 COG5175 MOT2 Transcriptional r 98.5 6.9E-07 1.5E-11 59.7 6.4 79 44-122 115-202 (480)
104 KOG4210 Nuclear localization s 98.4 5.4E-07 1.2E-11 59.9 5.5 121 1-123 137-264 (285)
105 KOG3152 TBP-binding protein, a 98.4 1.7E-07 3.7E-12 60.1 2.2 73 42-114 73-157 (278)
106 KOG0115 RNA-binding protein p5 98.3 3.2E-06 7E-11 54.4 6.5 90 4-106 4-93 (275)
107 PF13893 RRM_5: RNA recognitio 98.3 1.2E-06 2.6E-11 44.1 3.1 29 1-29 28-56 (56)
108 KOG4307 RNA binding protein RB 98.2 1.3E-05 2.8E-10 58.3 7.7 75 44-119 868-943 (944)
109 KOG2314 Translation initiation 98.2 2E-05 4.4E-10 56.0 8.2 75 43-118 58-139 (698)
110 KOG1995 Conserved Zn-finger pr 98.1 2.9E-06 6.3E-11 56.9 3.5 81 43-123 66-154 (351)
111 KOG0112 Large RNA-binding prot 98.1 4E-06 8.7E-11 62.1 3.8 106 4-122 423-530 (975)
112 COG0724 RNA-binding proteins ( 98.0 5.6E-05 1.2E-09 49.2 7.4 103 1-103 164-285 (306)
113 PF14605 Nup35_RRM_2: Nup53/35 97.9 4.9E-05 1.1E-09 37.8 4.7 52 44-102 2-53 (53)
114 KOG1365 RNA-binding protein Fu 97.9 0.00026 5.6E-09 48.5 9.4 108 1-111 109-231 (508)
115 PF08952 DUF1866: Domain of un 97.9 0.00028 6.1E-09 42.2 8.2 55 59-122 52-106 (146)
116 KOG0129 Predicted RNA-binding 97.8 0.00019 4.1E-09 50.6 8.5 66 40-106 256-327 (520)
117 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00031 6.8E-09 39.6 7.1 77 43-121 6-90 (100)
118 KOG0128 RNA-binding protein SA 97.7 9.3E-07 2E-11 64.9 -4.2 99 14-112 633-736 (881)
119 KOG4307 RNA binding protein RB 97.7 9.7E-05 2.1E-09 54.0 5.7 118 1-120 359-511 (944)
120 KOG1996 mRNA splicing factor [ 97.7 0.00028 6E-09 46.7 6.7 64 58-121 301-365 (378)
121 KOG4849 mRNA cleavage factor I 97.7 5.2E-05 1.1E-09 51.2 3.5 71 44-114 81-153 (498)
122 PLN03134 glycine-rich RNA-bind 97.7 0.00011 2.3E-09 44.3 4.5 33 1-33 83-115 (144)
123 KOG2416 Acinus (induces apopto 97.6 8.2E-05 1.8E-09 53.3 3.9 77 39-121 440-520 (718)
124 KOG0128 RNA-binding protein SA 97.6 2.6E-05 5.6E-10 57.7 0.9 78 43-121 736-813 (881)
125 smart00361 RRM_1 RNA recogniti 97.5 0.00011 2.4E-09 38.6 3.1 26 1-26 44-69 (70)
126 PF08675 RNA_bind: RNA binding 97.5 0.00099 2.2E-08 36.0 6.5 58 41-107 7-64 (87)
127 KOG0129 Predicted RNA-binding 97.5 0.00068 1.5E-08 47.9 6.9 65 39-103 366-431 (520)
128 KOG2202 U2 snRNP splicing fact 97.4 7.2E-05 1.6E-09 48.4 1.6 63 58-121 83-146 (260)
129 KOG4660 Protein Mei2, essentia 97.4 0.00048 1E-08 49.0 5.4 78 44-121 389-471 (549)
130 KOG0107 Alternative splicing f 97.4 0.00016 3.5E-09 44.4 2.7 34 1-34 54-87 (195)
131 KOG2193 IGF-II mRNA-binding pr 97.3 7E-06 1.5E-10 56.5 -4.1 107 3-119 46-153 (584)
132 KOG0111 Cyclophilin-type pepti 97.2 0.00052 1.1E-08 43.8 3.7 36 1-36 59-94 (298)
133 PF00076 RRM_1: RNA recognitio 97.2 0.00038 8.2E-09 36.1 2.6 25 1-25 46-70 (70)
134 KOG2591 c-Mpl binding protein, 97.1 0.0029 6.2E-08 45.5 6.8 94 7-118 150-247 (684)
135 PF10309 DUF2414: Protein of u 97.1 0.0079 1.7E-07 30.8 6.4 54 44-105 6-62 (62)
136 KOG4676 Splicing factor, argin 97.0 0.0019 4.2E-08 44.5 5.0 75 44-119 8-85 (479)
137 PF11608 Limkain-b1: Limkain b 97.0 0.00088 1.9E-08 36.3 2.7 32 1-32 46-77 (90)
138 KOG2068 MOT2 transcription fac 97.0 0.00031 6.7E-09 47.2 1.1 79 44-123 78-163 (327)
139 KOG0125 Ataxin 2-binding prote 96.8 0.0018 3.9E-08 43.6 3.8 34 1-34 143-176 (376)
140 PF03467 Smg4_UPF3: Smg-4/UPF3 96.8 0.0036 7.9E-08 39.0 4.8 69 42-110 6-80 (176)
141 PF04847 Calcipressin: Calcipr 96.6 0.0097 2.1E-07 37.3 5.7 60 57-122 9-70 (184)
142 smart00362 RRM_2 RNA recogniti 96.6 0.0036 7.8E-08 32.0 3.1 27 1-27 46-72 (72)
143 smart00360 RRM RNA recognition 96.4 0.0051 1.1E-07 31.2 3.1 27 1-27 45-71 (71)
144 PF07576 BRAP2: BRCA1-associat 96.4 0.08 1.7E-06 30.5 9.7 68 42-111 11-80 (110)
145 cd00590 RRM RRM (RNA recogniti 96.3 0.007 1.5E-07 31.0 3.4 28 1-28 47-74 (74)
146 PF14259 RRM_6: RNA recognitio 96.3 0.0049 1.1E-07 32.0 2.6 25 1-25 46-70 (70)
147 KOG0130 RNA-binding protein RB 96.2 0.0034 7.4E-08 37.1 1.8 31 1-31 121-151 (170)
148 KOG1855 Predicted RNA-binding 96.2 0.037 8E-07 38.8 6.8 67 41-107 229-308 (484)
149 KOG2135 Proteins containing th 96.1 0.0041 9E-08 43.8 2.1 73 43-122 372-445 (526)
150 KOG0804 Cytoplasmic Zn-finger 96.1 0.067 1.5E-06 37.8 7.8 69 41-111 72-141 (493)
151 KOG0108 mRNA cleavage and poly 95.9 0.0096 2.1E-07 42.1 3.3 33 1-33 67-99 (435)
152 KOG2193 IGF-II mRNA-binding pr 95.9 0.011 2.5E-07 41.3 3.5 73 45-123 3-76 (584)
153 PF15023 DUF4523: Protein of u 95.8 0.054 1.2E-06 32.5 5.7 73 41-121 84-160 (166)
154 KOG4207 Predicted splicing fac 95.8 0.0072 1.6E-07 38.4 2.1 32 1-32 62-93 (256)
155 PF11767 SET_assoc: Histone ly 95.3 0.18 3.9E-06 26.2 6.8 55 54-117 11-65 (66)
156 PLN03120 nucleic acid binding 95.3 0.044 9.6E-07 36.2 4.4 32 1-33 50-81 (260)
157 KOG0114 Predicted RNA-binding 95.0 0.025 5.3E-07 32.1 2.2 33 1-33 64-96 (124)
158 KOG0121 Nuclear cap-binding pr 94.7 0.025 5.4E-07 33.3 1.9 29 1-29 85-113 (153)
159 KOG0112 Large RNA-binding prot 94.5 0.0077 1.7E-07 45.6 -0.6 78 42-120 371-448 (975)
160 KOG4285 Mitotic phosphoprotein 94.4 0.13 2.9E-06 34.6 4.9 61 46-114 200-260 (350)
161 PF03880 DbpA: DbpA RNA bindin 94.3 0.39 8.5E-06 25.4 6.6 59 53-120 11-74 (74)
162 KOG2253 U1 snRNP complex, subu 93.6 0.074 1.6E-06 39.2 2.9 71 39-118 36-106 (668)
163 KOG4454 RNA binding protein (R 93.6 0.016 3.4E-07 37.2 -0.4 93 1-108 56-148 (267)
164 PF08952 DUF1866: Domain of un 93.4 0.1 2.2E-06 31.5 2.8 29 1-30 77-105 (146)
165 KOG2202 U2 snRNP splicing fact 93.1 0.099 2.2E-06 34.3 2.6 30 1-30 117-146 (260)
166 KOG4208 Nucleolar RNA-binding 93.0 0.093 2E-06 33.4 2.3 32 1-32 99-130 (214)
167 KOG4574 RNA-binding protein (c 92.9 0.081 1.8E-06 40.3 2.2 69 48-122 303-373 (1007)
168 KOG0226 RNA-binding proteins [ 92.4 0.063 1.4E-06 35.3 1.0 30 1-30 239-268 (290)
169 PLN03213 repressor of silencin 92.2 0.14 3E-06 37.0 2.5 27 5-31 61-87 (759)
170 PLN03121 nucleic acid binding 92.0 0.41 9E-06 31.4 4.3 30 1-31 51-80 (243)
171 KOG1996 mRNA splicing factor [ 91.8 0.18 4E-06 33.9 2.6 30 1-30 336-365 (378)
172 KOG0132 RNA polymerase II C-te 90.3 0.28 6.1E-06 37.2 2.7 63 3-65 466-528 (894)
173 KOG4210 Nuclear localization s 89.4 0.22 4.8E-06 33.5 1.5 76 42-117 87-162 (285)
174 PF07292 NID: Nmi/IFP 35 domai 89.4 2.3 5.1E-05 23.4 6.5 64 1-65 5-74 (88)
175 PF05172 Nup35_RRM: Nup53/35/4 88.5 0.4 8.7E-06 27.1 1.9 28 1-29 61-89 (100)
176 COG5175 MOT2 Transcriptional r 87.6 0.66 1.4E-05 32.0 2.7 30 1-30 172-201 (480)
177 PF11767 SET_assoc: Histone ly 87.1 0.94 2E-05 23.5 2.6 26 1-26 40-65 (66)
178 PF03880 DbpA: DbpA RNA bindin 86.9 0.44 9.6E-06 25.2 1.4 25 5-29 50-74 (74)
179 KOG0151 Predicted splicing reg 86.8 0.68 1.5E-05 35.0 2.6 30 1-30 226-255 (877)
180 KOG0533 RRM motif-containing p 85.4 1.6 3.4E-05 28.8 3.6 33 1-33 131-163 (243)
181 KOG4410 5-formyltetrahydrofola 84.7 2.2 4.8E-05 28.8 4.1 46 44-95 331-377 (396)
182 KOG4019 Calcineurin-mediated s 84.2 0.94 2E-05 28.4 2.1 58 59-122 31-89 (193)
183 PF15513 DUF4651: Domain of un 83.9 3.6 7.7E-05 21.1 3.7 21 58-78 9-29 (62)
184 PF04847 Calcipressin: Calcipr 82.3 1.5 3.3E-05 27.6 2.5 31 1-31 38-70 (184)
185 KOG0415 Predicted peptidyl pro 80.2 1.5 3.3E-05 30.5 2.1 31 1-31 288-318 (479)
186 PF07530 PRE_C2HC: Associated 76.9 8.7 0.00019 20.0 4.0 64 58-124 2-66 (68)
187 KOG0126 Predicted RNA-binding 70.8 0.54 1.2E-05 29.6 -1.7 28 1-28 84-111 (219)
188 KOG4483 Uncharacterized conser 69.8 18 0.00039 25.9 5.1 55 43-104 391-446 (528)
189 PF14111 DUF4283: Domain of un 68.1 0.81 1.8E-05 27.4 -1.4 30 46-75 107-137 (153)
190 KOG4661 Hsp27-ERE-TATA-binding 67.8 5.9 0.00013 29.6 2.6 30 2-31 455-484 (940)
191 KOG0149 Predicted RNA-binding 67.8 6.6 0.00014 25.8 2.6 30 1-31 61-90 (247)
192 KOG2295 C2H2 Zn-finger protein 63.1 0.77 1.7E-05 33.7 -2.4 70 42-111 230-299 (648)
193 smart00596 PRE_C2HC PRE_C2HC d 63.0 21 0.00045 18.8 3.5 62 59-123 3-65 (69)
194 KOG0153 Predicted RNA-binding 62.2 11 0.00024 26.3 3.0 31 1-31 271-302 (377)
195 PF03468 XS: XS domain; Inter 61.4 25 0.00055 20.4 4.0 44 56-102 30-74 (116)
196 KOG4209 Splicing factor RNPS1, 60.0 9.5 0.00021 25.1 2.3 30 1-31 150-179 (231)
197 KOG1295 Nonsense-mediated deca 59.3 19 0.00042 25.4 3.8 67 44-110 8-77 (376)
198 KOG0113 U1 small nuclear ribon 56.7 17 0.00037 24.9 3.1 30 1-30 150-179 (335)
199 KOG2314 Translation initiation 55.4 8.9 0.00019 28.6 1.7 26 1-26 112-138 (698)
200 KOG4676 Splicing factor, argin 55.3 1.8 3.8E-05 30.6 -1.6 61 44-109 152-212 (479)
201 KOG1995 Conserved Zn-finger pr 52.3 7.3 0.00016 27.2 0.9 31 1-31 123-153 (351)
202 KOG2891 Surface glycoprotein [ 52.0 25 0.00053 24.0 3.2 36 42-77 148-195 (445)
203 PF10567 Nab6_mRNP_bdg: RNA-re 51.9 39 0.00084 23.2 4.1 78 43-120 15-105 (309)
204 KOG4365 Uncharacterized conser 47.2 2.6 5.6E-05 30.3 -1.9 74 45-119 5-78 (572)
205 KOG4213 RNA-binding protein La 46.3 38 0.00083 21.5 3.3 43 58-103 124-168 (205)
206 KOG2318 Uncharacterized conser 44.2 1.4E+02 0.0031 22.8 8.4 80 40-119 171-304 (650)
207 PRK10905 cell division protein 43.5 1.1E+02 0.0023 21.5 5.3 51 55-107 256-308 (328)
208 KOG0804 Cytoplasmic Zn-finger 42.6 57 0.0012 23.9 4.0 21 1-21 122-142 (493)
209 KOG2591 c-Mpl binding protein, 41.5 8.5 0.00018 28.7 -0.1 25 1-25 219-245 (684)
210 PF10915 DUF2709: Protein of u 41.2 88 0.0019 20.2 4.3 62 1-69 49-118 (238)
211 cd00018 AP2 DNA-binding domain 40.5 31 0.00067 17.2 2.0 13 1-13 32-44 (61)
212 PF11823 DUF3343: Protein of u 40.0 56 0.0012 16.9 3.0 24 87-110 3-26 (73)
213 KOG4008 rRNA processing protei 39.7 31 0.00067 22.9 2.2 32 42-73 39-70 (261)
214 smart00380 AP2 DNA-binding dom 39.4 32 0.0007 17.4 1.9 13 1-13 31-43 (64)
215 KOG2135 Proteins containing th 38.5 15 0.00033 26.8 0.8 32 1-33 416-447 (526)
216 PRK00911 dihydroxy-acid dehydr 38.5 1.8E+02 0.0038 22.2 6.9 77 1-97 404-481 (552)
217 COG5507 Uncharacterized conser 37.7 61 0.0013 18.4 2.9 22 84-105 65-86 (117)
218 PF13689 DUF4154: Domain of un 36.9 94 0.002 18.6 4.5 41 7-52 38-78 (145)
219 KOG2068 MOT2 transcription fac 35.3 13 0.00028 25.7 0.1 30 1-30 132-161 (327)
220 PF10281 Ish1: Putative stress 32.8 40 0.00087 15.1 1.5 16 54-69 3-18 (38)
221 PHA01632 hypothetical protein 32.7 49 0.0011 16.5 1.8 18 48-65 21-38 (64)
222 cd00027 BRCT Breast Cancer Sup 31.2 69 0.0015 15.3 2.9 27 44-70 2-28 (72)
223 PF15643 Tox-PL-2: Papain fold 30.1 65 0.0014 18.3 2.3 31 89-119 16-46 (100)
224 PF14657 Integrase_AP2: AP2-li 29.5 56 0.0012 15.2 1.8 14 1-14 24-37 (46)
225 PF06014 DUF910: Bacterial pro 28.8 39 0.00083 17.4 1.1 16 57-72 4-19 (62)
226 PRK11901 hypothetical protein; 28.8 2.1E+02 0.0046 20.1 5.4 59 44-107 246-306 (327)
227 KOG0635 Adenosine 5'-phosphosu 27.6 1.3E+02 0.0027 18.9 3.4 35 39-73 27-64 (207)
228 PF14714 KH_dom-like: KH-domai 27.2 1.1E+02 0.0024 16.4 3.6 48 19-72 22-76 (80)
229 PF15407 Spo7_2_N: Sporulation 26.7 27 0.00058 18.2 0.4 18 42-59 26-43 (67)
230 PF12518 DUF3721: Protein of u 24.8 82 0.0018 14.0 2.1 16 1-16 1-16 (34)
231 COG5193 LHP1 La protein, small 24.3 39 0.00085 24.3 0.9 60 44-103 175-244 (438)
232 COG0481 LepA Membrane GTPase L 23.9 2.2E+02 0.0048 21.5 4.5 48 41-89 295-343 (603)
233 PF14268 YoaP: YoaP-like 23.8 74 0.0016 15.1 1.5 32 88-119 3-36 (44)
234 PF01329 Pterin_4a: Pterin 4 a 23.1 1.5E+02 0.0032 16.4 3.6 61 53-121 3-73 (95)
235 KOG4574 RNA-binding protein (c 23.0 91 0.002 25.0 2.6 34 1-34 341-376 (1007)
236 PF08383 Maf_N: Maf N-terminal 21.8 84 0.0018 14.1 1.4 10 3-12 24-33 (35)
237 KOG0156 Cytochrome P450 CYP2 s 21.7 2.7E+02 0.0059 20.7 4.7 59 47-115 36-97 (489)
238 PF12623 Hen1_L: RNA repair, l 21.5 2.6E+02 0.0057 18.7 4.6 60 44-104 119-182 (245)
239 PF03439 Spt5-NGN: Early trans 21.1 1.5E+02 0.0033 15.9 3.6 26 84-109 43-68 (84)
240 PF11181 YflT: Heat induced st 21.1 86 0.0019 17.5 1.8 28 1-28 6-33 (103)
241 smart00540 LEM in nuclear memb 20.8 79 0.0017 15.0 1.3 16 54-69 5-20 (44)
242 TIGR00110 ilvD dihydroxy-acid 20.1 4E+02 0.0087 20.3 7.8 78 1-98 389-467 (535)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.93 E-value=1.3e-24 Score=146.15 Aligned_cols=118 Identities=30% Similarity=0.514 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.++++|.+|+..|||..+.+++|+|.|+.+.... ..+++|||+|||..+++++|+++|++||.|..+.++.+..
T Consensus 156 F~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~~~-----~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~ 230 (346)
T TIGR01659 156 FGSEADSQRAIKNLNGITVRNKRLKVSYARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL 230 (346)
T ss_pred EccHHHHHHHHHHcCCCccCCceeeeecccccccc-----cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC
Confidence 78999999999999999999999999998654322 2456899999999999999999999999999999999888
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecC--eEEEEEEccCC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~ 123 (125)
++.++++|||+|.+.++|++|+..|++..+.+ +.|+|.++.+.
T Consensus 231 tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 231 TGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 99999999999999999999999999998865 78999998764
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.92 E-value=7.1e-24 Score=143.69 Aligned_cols=79 Identities=33% Similarity=0.504 Sum_probs=76.5
Q ss_pred EEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
.|||+|||.++++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|..|+..|||..|+|+.|+|.|+.++
T Consensus 271 ~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~ 349 (352)
T TIGR01661 271 CIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNK 349 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccCC
Confidence 6999999999999999999999999999999999889999999999999999999999999999999999999998876
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=9.9e-24 Score=149.12 Aligned_cols=123 Identities=19% Similarity=0.339 Sum_probs=108.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC------CCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL------PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGAR 74 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~------~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~ 74 (125)
|.++++|.+|+..|||..+.|+.|+|.++....... .......++|||+|||.++++++|+++|+.||.|..+.
T Consensus 156 F~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svr 235 (612)
T TIGR01645 156 YEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQ 235 (612)
T ss_pred eCcHHHHHHHHHhcCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEE
Confidence 789999999999999999999999998764332211 11123457899999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 75 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 75 ~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+..+..++..+|||||+|.+.++|..|+..||+..|+|+.|+|.++.++
T Consensus 236 l~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 236 LARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred EEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCC
Confidence 9999888999999999999999999999999999999999999998754
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=9.8e-23 Score=129.32 Aligned_cols=117 Identities=25% Similarity=0.490 Sum_probs=103.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC-----------CCCCCCCcEEEEcCCCccCCHHHHHHHhccCCc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL-----------PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGN 69 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~-----------~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~ 69 (125)
|-+.++|+.||..|||.=+++|.|+.+|+..++... ....+.+++||++|++.-+++++|++.|++||.
T Consensus 111 f~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~ 190 (321)
T KOG0148|consen 111 FPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGP 190 (321)
T ss_pred ccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCc
Confidence 667899999999999999999999999997554221 112346799999999999999999999999999
Q ss_pred eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 70 VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 70 ~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
|.++++..+ +||+||.|++.+.|..||..+||..|+|..++|.|-+..
T Consensus 191 I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 191 IQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred ceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccC
Confidence 999999877 689999999999999999999999999999999997653
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.88 E-value=1.7e-21 Score=132.10 Aligned_cols=118 Identities=24% Similarity=0.504 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.++++|.+|+..|||..+.|+.|+|.|+.+.... .....|||+|||..+++++|+.+|.+||.+..+.+..+..
T Consensus 52 f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~~~-----~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 126 (352)
T TIGR01661 52 YVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSSDS-----IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNV 126 (352)
T ss_pred ECcHHHHHHHHhhcccEEECCeeEEEEeecccccc-----cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCC
Confidence 78899999999999999999999999998654322 2456899999999999999999999999999999988877
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecC--eEEEEEEccCC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~ 123 (125)
++.++|+|||+|.+.++|+.|+..|+|..+.| .+|.+.++..+
T Consensus 127 ~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~ 171 (352)
T TIGR01661 127 TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNP 171 (352)
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCC
Confidence 78899999999999999999999999998876 67888888644
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.88 E-value=1.6e-21 Score=139.19 Aligned_cols=122 Identities=34% Similarity=0.575 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHhcCCcccc----CeEEEEeccCCCCCCC-------------CCCCCCCcEEEEcCCCccCCHHHHHHH
Q 033181 1 MSTVEDCNAVIENLDGREYL----GRILRVNFSDKPKPKL-------------PLYAETDFKLFVGNLSWSVTTESLTQA 63 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~----~~~i~v~~~~~~~~~~-------------~~~~~~~~~l~i~~lp~~~~~~~l~~~ 63 (125)
|++.++|.+|++.+||..+. |+.+.+.++....... ......++.|||+||+..+++++|+++
T Consensus 226 F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~ 305 (562)
T TIGR01628 226 FEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLREL 305 (562)
T ss_pred ECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHH
Confidence 78999999999999999999 9999998875543321 111334578999999999999999999
Q ss_pred hccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 64 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 64 f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
|++||.|..+.+..+ .+|.++|+|||.|.+.++|.+|+..+||..++|+.|.|.++..+
T Consensus 306 F~~~G~i~~~~i~~d-~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k 364 (562)
T TIGR01628 306 FSECGEITSAKVMLD-EKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRK 364 (562)
T ss_pred HHhcCCeEEEEEEEC-CCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCc
Confidence 999999999999888 77899999999999999999999999999999999999999865
No 7
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.88 E-value=4.6e-21 Score=133.91 Aligned_cols=120 Identities=35% Similarity=0.590 Sum_probs=105.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCC-------CCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP-------LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA 73 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~-------~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~ 73 (125)
|.+.++|.+|+. |+|..+.|++|.|.++...+.... ...+...+|||+|||..+++++|+++|++||.|..+
T Consensus 138 F~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v 216 (457)
T TIGR01622 138 FYDVESVIKALA-LTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDV 216 (457)
T ss_pred ECCHHHHHHHHH-hCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEE
Confidence 789999999997 999999999999988654322111 111235789999999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 74 RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 74 ~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+..+..+|..+|+|||+|.+.++|..|+..|+|..|.|+.|.|.|+.
T Consensus 217 ~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 217 QLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred EEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 999988888999999999999999999999999999999999999965
No 8
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=4.5e-21 Score=135.48 Aligned_cols=121 Identities=21% Similarity=0.383 Sum_probs=103.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC------------------------CCCCCCCcEEEEcCCCccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL------------------------PLYAETDFKLFVGNLSWSVT 56 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~------------------------~~~~~~~~~l~i~~lp~~~~ 56 (125)
|.++++|..||. |||..+.|++|+|.......+.. .........|||+|||..++
T Consensus 230 F~~~e~A~~Al~-l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~ 308 (509)
T TIGR01642 230 FRTVEEATFAMA-LDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLG 308 (509)
T ss_pred eCCHHHHhhhhc-CCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCC
Confidence 789999999995 99999999999997543211000 00123357899999999999
Q ss_pred HHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 57 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 57 ~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+++|+++|..||.+..+.+..+..+|.++|||||+|.+.+.|..|+..|+|..|+|+.|.|.++..
T Consensus 309 ~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 309 EDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred HHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 999999999999999999988888899999999999999999999999999999999999999853
No 9
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.86 E-value=1.3e-21 Score=124.06 Aligned_cols=117 Identities=27% Similarity=0.544 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|-+++||++|+..|||..+..+.|+|.|+++..... .+..|||++||..++..+|+.+|++||.|.-.++..+..
T Consensus 90 Yv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~~I-----k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv 164 (360)
T KOG0145|consen 90 YVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSDSI-----KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV 164 (360)
T ss_pred ecChHHHHHHHhhhcceeeccceEEEEeccCChhhh-----cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 568999999999999999999999999998765443 456799999999999999999999999999888888888
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecC--eEEEEEEccC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLAQG 122 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~ 122 (125)
+|..+|.+||.|+.+.+|++|+..|||..-.| .+|.|.|+..
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFann 208 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANN 208 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCC
Confidence 89999999999999999999999999987654 5799999864
No 10
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=1.2e-20 Score=113.07 Aligned_cols=85 Identities=42% Similarity=0.780 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
...+++|||+|||+.+++++|+++|.+||.|..+.++.+..++.++|||||+|.+.++|+.|+..+++..|+|+.|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34567899999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 111 a~~~~ 115 (144)
T PLN03134 111 ANDRP 115 (144)
T ss_pred CCcCC
Confidence 98663
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.86 E-value=1.3e-20 Score=133.09 Aligned_cols=115 Identities=24% Similarity=0.392 Sum_probs=100.3
Q ss_pred CCCHHHHHHHHHhcCC--ccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccC--CceeEEEEe
Q 033181 1 MSTVEDCNAVIENLDG--REYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEY--GNVVGARVL 76 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g--~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~--g~~~~~~~~ 76 (125)
|+++++|..|++.|+. ..+.|+.|.|.|+.+.............+|||+||+.++++++|+++|++| |.|..+.+.
T Consensus 189 F~s~edAa~AirkL~~gki~l~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~ 268 (578)
T TIGR01648 189 YESHRAAAMARRKLMPGRIQLWGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI 268 (578)
T ss_pred cCCHHHHHHHHHHhhccceEecCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee
Confidence 7899999999998764 457899999999987655444444556789999999999999999999999 999988764
Q ss_pred ecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 77 YDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 77 ~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++||||+|.+.++|++|+..||+..|+|+.|+|.|++++
T Consensus 269 --------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~ 307 (578)
T TIGR01648 269 --------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPV 307 (578)
T ss_pred --------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 359999999999999999999999999999999999874
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.86 E-value=1.7e-20 Score=131.66 Aligned_cols=121 Identities=23% Similarity=0.347 Sum_probs=99.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCC------------------------C--------CCCCCcEEEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP------------------------L--------YAETDFKLFV 48 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~------------------------~--------~~~~~~~l~i 48 (125)
|+++++|..|+..|||..+.|++|+|.++.......+ . ..+++.+|||
T Consensus 320 f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v 399 (481)
T TIGR01649 320 MADPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHL 399 (481)
T ss_pred ECCHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEE
Confidence 7899999999999999999999999998754311000 0 0134578999
Q ss_pred cCCCccCCHHHHHHHhccCCc--eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeE------EEEEEc
Q 033181 49 GNLSWSVTTESLTQAFQEYGN--VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA------MRVSLA 120 (125)
Q Consensus 49 ~~lp~~~~~~~l~~~f~~~g~--~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~------i~v~~~ 120 (125)
+|||..+++++|+++|++||. +..+.+... .++ .+++|||+|.+.++|..|+..|||..|.++. |+|+|+
T Consensus 400 ~NLp~~~tee~L~~lF~~~G~~~i~~ik~~~~-~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs 477 (481)
T TIGR01649 400 SNIPLSVSEEDLKELFAENGVHKVKKFKFFPK-DNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFS 477 (481)
T ss_pred ecCCCCCCHHHHHHHHHhcCCccceEEEEecC-CCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEec
Confidence 999999999999999999998 777766543 222 4789999999999999999999999999875 999999
Q ss_pred cCC
Q 033181 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
+++
T Consensus 478 ~~~ 480 (481)
T TIGR01649 478 TSR 480 (481)
T ss_pred cCC
Confidence 876
No 13
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.84 E-value=6.2e-21 Score=114.90 Aligned_cols=119 Identities=29% Similarity=0.508 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEE-EEeecC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYDG 79 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~-~~~~~~ 79 (125)
|.+.|+|+.|++-||+..++|++|+++.+...... ...+..+||+||.+.+++..|.+.|+.||.+... .+.++.
T Consensus 58 f~~eedadYAikiln~VkLYgrpIrv~kas~~~~n----l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~ 133 (203)
T KOG0131|consen 58 FRTEEDADYAIKILNMVKLYGRPIRVNKASAHQKN----LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP 133 (203)
T ss_pred EechhhhHHHHHHHHHHHhcCceeEEEeccccccc----ccccccccccccCcchhHHHHHHHHHhccccccCCcccccc
Confidence 67899999999999999999999999988733322 3455889999999999999999999999987763 667777
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 80 ~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
.+|.++|++|+.|.+.+.+.+|+..++|..++++++.+.++..+
T Consensus 134 ~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 134 DTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKK 177 (203)
T ss_pred cCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEec
Confidence 88999999999999999999999999999999999999998754
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.84 E-value=8.6e-20 Score=130.38 Aligned_cols=122 Identities=29% Similarity=0.434 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|++.++|.+|+..+||..+.|+.|.+.................+.|||+|||.++++++|+++|+.||.|..+.+..+ .
T Consensus 136 F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~-~ 214 (562)
T TIGR01628 136 FEKEESAKAAIQKVNGMLLNDKEVYVGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKD-G 214 (562)
T ss_pred ECCHHHHHHHHHHhcccEecCceEEEeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEEC-C
Confidence 789999999999999999999999998665443332223445678999999999999999999999999999988877 5
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceec----CeEEEEEEccCC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELE----GRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~----g~~i~v~~~~~~ 123 (125)
+|..+|+|||.|.+.++|..|+..++|..+. |+.+.|..+.++
T Consensus 215 ~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k 261 (562)
T TIGR01628 215 SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKR 261 (562)
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccCh
Confidence 6888999999999999999999999999999 999999887654
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.83 E-value=4.6e-19 Score=124.52 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=97.5
Q ss_pred CCCHHHHHHHHHh--cCCccccCeEEEEeccCCCCCCCCC-------CCCCCcEEEEcCCCccCCHHHHHHHhccCCcee
Q 033181 1 MSTVEDCNAVIEN--LDGREYLGRILRVNFSDKPKPKLPL-------YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVV 71 (125)
Q Consensus 1 f~~~~~a~~A~~~--~~g~~~~~~~i~v~~~~~~~~~~~~-------~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~ 71 (125)
|++.++|.+|+.. +++..+.|++|+|+|+......... .......|+|.||+..+++++|+++|++||.|.
T Consensus 45 f~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~ 124 (481)
T TIGR01649 45 FEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVL 124 (481)
T ss_pred eCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEE
Confidence 7899999999997 4789999999999999654322111 111224789999999999999999999999999
Q ss_pred EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecC--eEEEEEEccCC
Q 033181 72 GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLAQGR 123 (125)
Q Consensus 72 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~ 123 (125)
.+.+..+.. .++|||+|.+.++|.+|+..|||..|.| +.|+|.|+++.
T Consensus 125 ~v~i~~~~~----~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~ 174 (481)
T TIGR01649 125 RIVTFTKNN----VFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPT 174 (481)
T ss_pred EEEEEecCC----ceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCC
Confidence 998876532 3689999999999999999999999853 68999998863
No 16
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=4.9e-20 Score=123.51 Aligned_cols=120 Identities=29% Similarity=0.521 Sum_probs=105.3
Q ss_pred CCCHHHHHHHHHhcCC-ccccC--eEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEee
Q 033181 1 MSTVEDCNAVIENLDG-REYLG--RILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLY 77 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g-~~~~~--~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~ 77 (125)
|.+.++|.+|+.+|++ +.+.| .+|.|+|+..+.++. ..++.|||+.|+...++.+++.+|++||.|+.+.+.+
T Consensus 83 ~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 83 YYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERI----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred eccHHHHHHHHHHhhcccccCCCCcceeecccchhhhcc----ccchhhhhhhccccccHHHHHHHHHhhCccchhhhee
Confidence 5688999999999988 55665 689999998776663 3467899999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEecCHHHHHHHHHHhCCc-eecC--eEEEEEEccCCCC
Q 033181 78 DGESGRSRGYGFVCYSTKAEMETALESLNGV-ELEG--RAMRVSLAQGRRS 125 (125)
Q Consensus 78 ~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~-~~~g--~~i~v~~~~~~~~ 125 (125)
+ ..+.++||+||.|.+++.|..|++.|||. ++.| .+|.|+||+++|+
T Consensus 159 d-~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 159 D-PDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKD 208 (510)
T ss_pred c-ccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCC
Confidence 8 67899999999999999999999999995 5755 5799999998864
No 17
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=4.9e-19 Score=120.05 Aligned_cols=110 Identities=28% Similarity=0.549 Sum_probs=99.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.++++|++|+.+||...+.|++|++.|+...+ ..+||.||+++++..+|.++|+.||.|..|.+..+.
T Consensus 44 f~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~----------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~- 112 (369)
T KOG0123|consen 44 FQQPADAERALDTMNFDVLKGKPIRIMWSQRDP----------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE- 112 (369)
T ss_pred cCCHHHHHHHHHHcCCcccCCcEEEeehhccCC----------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-
Confidence 789999999999999999999999999996332 129999999999999999999999999999999884
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+| .+|+ ||+|++.+.|+.|+..+||..+.|++|.|.....+
T Consensus 113 ~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~ 153 (369)
T KOG0123|consen 113 NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERK 153 (369)
T ss_pred CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccch
Confidence 44 7888 99999999999999999999999999999765543
No 18
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.81 E-value=9.4e-19 Score=123.82 Aligned_cols=117 Identities=23% Similarity=0.388 Sum_probs=101.8
Q ss_pred HHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCC
Q 033181 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 83 (125)
Q Consensus 4 ~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~ 83 (125)
.+.|.+|+.+++|+.+........+..+.+.+........+.|||+|||.++++++|..+|+++|.|..+.+..+ .+|.
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~ 97 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQ 97 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCC
Confidence 357889999999999988777777776666555555567799999999999999999999999999999999999 7899
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCceec-CeEEEEEEcc
Q 033181 84 SRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLAQ 121 (125)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 121 (125)
++|||||+|.+.++|+.|+..||+..+. |+.|.++.+.
T Consensus 98 sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 98 NRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred ccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 9999999999999999999999998884 7777776654
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1e-18 Score=120.18 Aligned_cols=122 Identities=25% Similarity=0.465 Sum_probs=104.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC---------------------CCCCCCCcEEEEcCCCccCCHHH
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL---------------------PLYAETDFKLFVGNLSWSVTTES 59 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~---------------------~~~~~~~~~l~i~~lp~~~~~~~ 59 (125)
|+=.+|+++|+...++..+.|+.|.|.++....... .....+.+.|.|+|||+.....+
T Consensus 54 Fam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~d 133 (678)
T KOG0127|consen 54 FAMEEDVQRALAETEQSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPD 133 (678)
T ss_pred eehHhHHHHHHHHhhcCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHH
Confidence 455789999999999999999999998875332211 01123467899999999999999
Q ss_pred HHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 60 l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
|+.+|+.||.+..+.+++. ..|+.+|||||+|....+|..|+..+|+..|+|++|.|.||-++
T Consensus 134 Lk~vFs~~G~V~Ei~IP~k-~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 134 LKNVFSNFGKVVEIVIPRK-KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred HHHHHhhcceEEEEEcccC-CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 9999999999999999977 45666699999999999999999999999999999999998665
No 20
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.79 E-value=3.9e-18 Score=90.46 Aligned_cols=70 Identities=41% Similarity=0.785 Sum_probs=66.6
Q ss_pred EEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 46 l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
|||+|||..+++++|+++|++||.+..+.+..+ .++...++|||+|.+.++|+.|+..++|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999988887 6788999999999999999999999999999999885
No 21
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1.3e-17 Score=106.00 Aligned_cols=123 Identities=29% Similarity=0.480 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHhcCCccccC--eEEEEeccCCCCCC-------------------------------------------
Q 033181 1 MSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPK------------------------------------------- 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~--~~i~v~~~~~~~~~------------------------------------------- 35 (125)
|....+|+.|+..|||..=.| .+|.|+|++.+.+.
T Consensus 176 FDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rf 255 (360)
T KOG0145|consen 176 FDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARF 255 (360)
T ss_pred ecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccC
Confidence 677889999999999976654 58999988543211
Q ss_pred ---------------CCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHH
Q 033181 36 ---------------LPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 100 (125)
Q Consensus 36 ---------------~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 100 (125)
.+..+..++.|||-||.++.++..|.++|.+||.+..+.+.++..+.+++||+||.+.+.++|..
T Consensus 256 sP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAam 335 (360)
T KOG0145|consen 256 SPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAM 335 (360)
T ss_pred CCccccccceeeeeccCCCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHH
Confidence 00011234789999999999999999999999999999999998889999999999999999999
Q ss_pred HHHHhCCceecCeEEEEEEccCC
Q 033181 101 ALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 101 a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
|+..|||..++++.|.|+|...+
T Consensus 336 Ai~sLNGy~lg~rvLQVsFKtnk 358 (360)
T KOG0145|consen 336 AIASLNGYRLGDRVLQVSFKTNK 358 (360)
T ss_pred HHHHhcCccccceEEEEEEecCC
Confidence 99999999999999999997765
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=2.5e-18 Score=115.81 Aligned_cols=115 Identities=25% Similarity=0.382 Sum_probs=100.9
Q ss_pred CCCHHHHHHHHHhc-CC-ccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeec
Q 033181 1 MSTVEDCNAVIENL-DG-REYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD 78 (125)
Q Consensus 1 f~~~~~a~~A~~~~-~g-~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~ 78 (125)
|++...|..|-+.| +| ..+.|..+.|.|+.+...........-..|||+||+.+++++.|++.|++||.+.++..+++
T Consensus 215 Ye~H~~Aa~aRrKl~~g~~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD 294 (506)
T KOG0117|consen 215 YESHRAAAMARRKLMPGKIKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD 294 (506)
T ss_pred eecchhHHHHHhhccCCceeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc
Confidence 45666777776664 44 66789999999999888877666666789999999999999999999999999999987755
Q ss_pred CCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 79 GESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 79 ~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
||||+|.++++|-+|++.+||+.|+|..|.|.+|+|.
T Consensus 295 --------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 295 --------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred --------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 9999999999999999999999999999999999874
No 23
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4.3e-18 Score=106.93 Aligned_cols=82 Identities=24% Similarity=0.469 Sum_probs=79.3
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
...+|.|.||+.++++.+|+++|.+||.+.++.+.+++.+|.++|||||.|.++++|.+|+..|+|.-+++--|+|.|++
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwsk 267 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSK 267 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 033181 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
|+
T Consensus 268 P~ 269 (270)
T KOG0122|consen 268 PS 269 (270)
T ss_pred CC
Confidence 86
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.77 E-value=6.1e-18 Score=114.08 Aligned_cols=85 Identities=27% Similarity=0.475 Sum_probs=79.4
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
.....++|||++||+++++++|+++|..||.|..+.+..+..++.++|||||+|.+.++|+.|+..|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 34567899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++++.
T Consensus 183 ~a~p~ 187 (346)
T TIGR01659 183 YARPG 187 (346)
T ss_pred ccccc
Confidence 98753
No 25
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.76 E-value=5e-17 Score=115.03 Aligned_cols=122 Identities=17% Similarity=0.229 Sum_probs=96.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCC-----------------------CCCCCCcEEEEcCCCcc--C
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP-----------------------LYAETDFKLFVGNLSWS--V 55 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~-----------------------~~~~~~~~l~i~~lp~~--~ 55 (125)
|.+.++|..|+..|||..+.|+.|.|.++........ ....++..|+|.|+... +
T Consensus 344 f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l 423 (509)
T TIGR01642 344 YKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDL 423 (509)
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHh
Confidence 7899999999999999999999999998753221100 01224567889888642 1
Q ss_pred -C-------HHHHHHHhccCCceeEEEEeecC---CCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 56 -T-------TESLTQAFQEYGNVVGARVLYDG---ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 56 -~-------~~~l~~~f~~~g~~~~~~~~~~~---~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+ .++|++.|.+||.|..+.++... .++...|++||+|.+.++|+.|+..|||..|+|+.|.+.|...
T Consensus 424 ~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 424 MDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred cCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 1 25789999999999999988652 2345568999999999999999999999999999999998753
No 26
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.75 E-value=5.6e-18 Score=96.93 Aligned_cols=81 Identities=26% Similarity=0.468 Sum_probs=76.6
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
..+++|||+||...++++.+.++|+.+|.|..+.+.+++.+..+.|||||+|.+.++|+.|++.++|..++.+.|++.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35789999999999999999999999999999999999888889999999999999999999999999999999999875
Q ss_pred c
Q 033181 121 Q 121 (125)
Q Consensus 121 ~ 121 (125)
.
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 3
No 27
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=7.7e-18 Score=118.62 Aligned_cols=123 Identities=24% Similarity=0.411 Sum_probs=106.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC----CCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEe
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP----KLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVL 76 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~----~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~ 76 (125)
|.++++|+.|++.|+|..+.|+.|.|.++...+. ...+.....+.|+|+|+|...+-.+++.+|..||++..+.++
T Consensus 567 F~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlP 646 (725)
T KOG0110|consen 567 FAKPESAQAALKALQGTVLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLP 646 (725)
T ss_pred ecCHHHHHHHHHHhcCceecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccc
Confidence 7899999999999999999999999999871111 111222335789999999999999999999999999999998
Q ss_pred ecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 77 YDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 77 ~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
.....+.++|||||.|-++.+|..|+.+|.+..+.|++|.+.|+...
T Consensus 647 KK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~~d 693 (725)
T KOG0110|consen 647 KKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAKSD 693 (725)
T ss_pred hhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhccc
Confidence 77555667899999999999999999999999999999999999764
No 28
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.74 E-value=6.3e-17 Score=109.13 Aligned_cols=119 Identities=24% Similarity=0.376 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCC
Q 033181 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 83 (125)
Q Consensus 4 ~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~ 83 (125)
.+.|.+||.+-.|..+.-..-.-++-.+++.+..+....++.|||++||.++.+++|.-+|..-|.|-++++..++.+|.
T Consensus 44 ~eaal~al~E~tgy~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~ 123 (506)
T KOG0117|consen 44 EEAALKALLERTGYTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGD 123 (506)
T ss_pred HHHHHHHHHHhcCceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCC
Confidence 46777788877776553222222455555556666678899999999999999999999999999999999999999999
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCcee-cCeEEEEEEccC
Q 033181 84 SRGYGFVCYSTKAEMETALESLNGVEL-EGRAMRVSLAQG 122 (125)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~~~~~-~g~~i~v~~~~~ 122 (125)
++|||||.|.+.+.|+.|++.||++.| .|+.|.|+.+-.
T Consensus 124 nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sva 163 (506)
T KOG0117|consen 124 NRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVA 163 (506)
T ss_pred CcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeee
Confidence 999999999999999999999999988 699999987653
No 29
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.74 E-value=1.2e-16 Score=84.84 Aligned_cols=70 Identities=39% Similarity=0.715 Sum_probs=64.2
Q ss_pred EEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 46 l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
|||+|||+.+++++|.++|..+|.+..+.+...+. +..+++|||+|.+.++|..|+..+++..++|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 78999999999999999999999999999998866 88999999999999999999999999999999874
No 30
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=2.7e-17 Score=104.79 Aligned_cols=102 Identities=34% Similarity=0.626 Sum_probs=90.7
Q ss_pred EEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH
Q 033181 23 ILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 102 (125)
Q Consensus 23 ~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 102 (125)
.++|.|+..+.....+.......++|+.|...++.++|++.|.+||+|...+++++..+++++||+||.|-+.++|+.||
T Consensus 42 e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI 121 (321)
T KOG0148|consen 42 ELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAI 121 (321)
T ss_pred hhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHH
Confidence 46777877664444444455678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCceecCeEEEEEEccCCC
Q 033181 103 ESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 103 ~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
..|+|..|++|.|+-.||..|.
T Consensus 122 ~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 122 QQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred HHhCCeeeccceeeccccccCc
Confidence 9999999999999999998764
No 31
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=3.4e-17 Score=106.73 Aligned_cols=79 Identities=28% Similarity=0.577 Sum_probs=72.5
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
..+|||+|||+...+.||+.+|.+||.|..+.++.+. .-++|||||+|++.++|++|-.+|||..++|++|.|..+..
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNE--RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNE--RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEecc--CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 4689999999999999999999999999999998773 33689999999999999999999999999999999998875
Q ss_pred C
Q 033181 123 R 123 (125)
Q Consensus 123 ~ 123 (125)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 32
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=2.5e-17 Score=103.00 Aligned_cols=80 Identities=35% Similarity=0.639 Sum_probs=72.7
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
..-+.|||+||+|.+..+.|+++|.+||+|.+..++.++.+|+++||+||+|.+.++|.+||. --+-.|+|++..|.+|
T Consensus 10 T~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA 88 (247)
T KOG0149|consen 10 TTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLA 88 (247)
T ss_pred ceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchh
Confidence 345789999999999999999999999999999999999999999999999999999999998 3456789999888775
Q ss_pred c
Q 033181 121 Q 121 (125)
Q Consensus 121 ~ 121 (125)
.
T Consensus 89 ~ 89 (247)
T KOG0149|consen 89 S 89 (247)
T ss_pred h
Confidence 4
No 33
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=7e-17 Score=97.00 Aligned_cols=77 Identities=32% Similarity=0.590 Sum_probs=71.5
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
-++.|||+||+..++..+|...|..||.+..+.+... +.|||||+|+++.+|+.|+..|+|..|.|..|+|.++.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 4689999999999999999999999999999988765 57899999999999999999999999999999999987
Q ss_pred CC
Q 033181 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
.+
T Consensus 84 G~ 85 (195)
T KOG0107|consen 84 GR 85 (195)
T ss_pred CC
Confidence 54
No 34
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.70 E-value=6.2e-16 Score=106.74 Aligned_cols=81 Identities=35% Similarity=0.613 Sum_probs=74.2
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC-----C-ceecCeEEEE
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN-----G-VELEGRAMRV 117 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~-----~-~~~~g~~i~v 117 (125)
.+|||+|||.+.+++.|..+|++||.+.+..++.++.++.+.|.|||.|.+...|+.||.... | ..|.|+.|+|
T Consensus 293 ~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv 372 (678)
T KOG0127|consen 293 KTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKV 372 (678)
T ss_pred ceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEee
Confidence 689999999999999999999999999999999999999999999999999999999999762 3 5689999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
..+-+++
T Consensus 373 ~~Av~Rk 379 (678)
T KOG0127|consen 373 TLAVTRK 379 (678)
T ss_pred eeccchH
Confidence 9886653
No 35
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.69 E-value=3.3e-16 Score=111.38 Aligned_cols=80 Identities=26% Similarity=0.603 Sum_probs=75.7
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||+|||..+++++|+++|.+||.|..+.+..+..+|+++|||||+|.+.++|+.|+..+||..|+|+.|+|....
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~ 185 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPS 185 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeecccc
Confidence 45789999999999999999999999999999999998899999999999999999999999999999999999997644
No 36
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.69 E-value=7.6e-16 Score=85.20 Aligned_cols=81 Identities=27% Similarity=0.454 Sum_probs=72.4
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
++.-+..|||.|||.+++.+++.++|..||.|..+.+..... .+|.|||.|++..+|..|+..|+|..+.++.+.|-
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~---TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vl 90 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE---TRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVL 90 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC---cCceEEEEehHhhhHHHHHHHhcccccCCceEEEE
Confidence 344567899999999999999999999999999999875543 47899999999999999999999999999999998
Q ss_pred EccC
Q 033181 119 LAQG 122 (125)
Q Consensus 119 ~~~~ 122 (125)
|..+
T Consensus 91 yyq~ 94 (124)
T KOG0114|consen 91 YYQP 94 (124)
T ss_pred ecCH
Confidence 8765
No 37
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=2.1e-16 Score=101.75 Aligned_cols=108 Identities=29% Similarity=0.494 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCC
Q 033181 2 STVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 81 (125)
Q Consensus 2 ~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~ 81 (125)
++...|+.|++.|+|..+.|..|.|+-++.+ ...+++|+|+|+.+..+..+|+..|.+||.+.++.++.+
T Consensus 44 EdktaaedairNLhgYtLhg~nInVeaSksK-------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--- 113 (346)
T KOG0109|consen 44 EDKTAAEDAIRNLHGYTLHGVNINVEASKSK-------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--- 113 (346)
T ss_pred ecccccHHHHhhcccceecceEEEEEecccc-------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc---
Confidence 4566789999999999999999999988655 234678999999999999999999999999999998855
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 82 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 82 ~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
++||+|+..++|..|++.|+|..++|++++|+++.++.
T Consensus 114 -----y~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 114 -----YAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred -----eeEEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 99999999999999999999999999999999988763
No 38
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.67 E-value=9.6e-16 Score=98.44 Aligned_cols=75 Identities=20% Similarity=0.285 Sum_probs=69.3
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.++|||+|||+.+++++|+++|+.||.|..+.++.+.. .+|+|||+|.+.++|+.|+. |+|..|+|+.|.|.++.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEecc
Confidence 46899999999999999999999999999999987743 46899999999999999996 99999999999999986
No 39
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=3.2e-16 Score=103.91 Aligned_cols=120 Identities=20% Similarity=0.394 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCC------CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL------YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGAR 74 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~------~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~ 74 (125)
|+-||.|+.|++.|||..++||.|+|.....-.+..+. ....-..|||..+-++++++|++..|..||.|..|.
T Consensus 162 YEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~ 241 (544)
T KOG0124|consen 162 YEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQ 241 (544)
T ss_pred EeCcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEE
Confidence 57789999999999999999999999865433322110 111235899999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 75 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 75 ~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
+.+....+.++||+|++|.+..+...|+..+|=+.++|.-|+|.-+
T Consensus 242 LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~ 287 (544)
T KOG0124|consen 242 LARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKC 287 (544)
T ss_pred eeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccc
Confidence 9999888899999999999999999999999999999999988543
No 40
>smart00362 RRM_2 RNA recognition motif.
Probab=99.64 E-value=4.5e-15 Score=78.41 Aligned_cols=72 Identities=40% Similarity=0.760 Sum_probs=65.8
Q ss_pred EEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
+|+|+|+|..++.++|+++|.+||.+..+.+.... +.+.++||++|.+.+.|+.|+..+++..+.|++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999998887664 6778999999999999999999999999999998763
No 41
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.1e-16 Score=97.60 Aligned_cols=83 Identities=34% Similarity=0.588 Sum_probs=79.3
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||++|..++++..|...|-+||.|..+.++.+..+++++||+||+|.-.++|.+|+..+|+..|.|+.|+|.|++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 033181 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
|.+
T Consensus 89 P~k 91 (298)
T KOG0111|consen 89 PEK 91 (298)
T ss_pred Ccc
Confidence 864
No 42
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.62 E-value=1.6e-15 Score=93.56 Aligned_cols=83 Identities=33% Similarity=0.577 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
..+.-+.|.|.||..-++.++|+..|.+||.|-.+.|+.+..++..+||+||.|....+|+.|+.+|+|..++|+.|.|+
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq 88 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQ 88 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeeh
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ecc
Q 033181 119 LAQ 121 (125)
Q Consensus 119 ~~~ 121 (125)
+|+
T Consensus 89 ~ar 91 (256)
T KOG4207|consen 89 MAR 91 (256)
T ss_pred hhh
Confidence 875
No 43
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=1.3e-14 Score=101.72 Aligned_cols=81 Identities=28% Similarity=0.396 Sum_probs=75.5
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
....+|||+|||..+++++|+++|+.||.|..+.++.+..+|..+|+|||+|.+.++|+.|+. ++|..+.|+.|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 346789999999999999999999999999999999988889999999999999999999997 9999999999999886
Q ss_pred cC
Q 033181 121 QG 122 (125)
Q Consensus 121 ~~ 122 (125)
..
T Consensus 166 ~~ 167 (457)
T TIGR01622 166 QA 167 (457)
T ss_pred ch
Confidence 54
No 44
>smart00360 RRM RNA recognition motif.
Probab=99.61 E-value=9e-15 Score=76.96 Aligned_cols=71 Identities=41% Similarity=0.783 Sum_probs=65.4
Q ss_pred EcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 48 VGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 48 i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
|+|||..+++++|+++|.+||.+..+.+.....++.++++|||+|.+.++|..|+..+++..++|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999888876678889999999999999999999999999999998863
No 45
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.60 E-value=2.2e-14 Score=91.04 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=68.8
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+++|+|+||++.+++++|+++|+.||.|..+.+.++. ...++|||+|.+++.++.|+. |+|..|.+.+|.|..+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWG 79 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCc
Confidence 46799999999999999999999999999999998773 345799999999999999996 99999999999997744
No 46
>PLN03213 repressor of silencing 3; Provisional
Probab=99.60 E-value=7.4e-15 Score=100.84 Aligned_cols=78 Identities=23% Similarity=0.439 Sum_probs=71.3
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCH--HHHHHHHHHhCCceecCeEEEEEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTK--AEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
...+|||+||++.+++++|...|.+||.|..+.+++. +| +|||||+|.+. .++.+|+..|+|..+.|+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEee
Confidence 4568999999999999999999999999999999844 55 89999999977 789999999999999999999999
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
|++.
T Consensus 85 AKP~ 88 (759)
T PLN03213 85 AKEH 88 (759)
T ss_pred ccHH
Confidence 8863
No 47
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=2.4e-14 Score=92.54 Aligned_cols=83 Identities=29% Similarity=0.665 Sum_probs=78.1
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
++=++|||.-|+.++++..|+..|..||.|..+.++.+..+|+++|||||+|+...+...|.+..+|..|+|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 45589999999999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred cCC
Q 033181 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
..+
T Consensus 179 RgR 181 (335)
T KOG0113|consen 179 RGR 181 (335)
T ss_pred ccc
Confidence 543
No 48
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.58 E-value=6.8e-14 Score=74.18 Aligned_cols=74 Identities=43% Similarity=0.776 Sum_probs=67.0
Q ss_pred EEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
+|+|+|||..+++++++++|..+|.+..+.+.....+ .+.++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 3789999999999999999999999999988876433 6688999999999999999999999999999998864
No 49
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.58 E-value=1e-14 Score=100.32 Aligned_cols=81 Identities=36% Similarity=0.726 Sum_probs=78.0
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+.+||+|+|.+++++.|..+|+..|.|..++++.+..+|+++||+|++|.+.+++..|++.|||..++|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred C
Q 033181 124 R 124 (125)
Q Consensus 124 ~ 124 (125)
+
T Consensus 99 ~ 99 (435)
T KOG0108|consen 99 K 99 (435)
T ss_pred c
Confidence 3
No 50
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.2e-14 Score=88.46 Aligned_cols=81 Identities=21% Similarity=0.454 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
..++.|||+|||.++.+.+++++|.+||.|..+.+... .-+..||||+|++..+|+.|+.--+|..++|++|+|.|+
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r---~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR---PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC---CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 35688999999999999999999999999999877433 224579999999999999999999999999999999998
Q ss_pred cCCC
Q 033181 121 QGRR 124 (125)
Q Consensus 121 ~~~~ 124 (125)
..-+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 7653
No 51
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=1.3e-14 Score=84.05 Aligned_cols=81 Identities=28% Similarity=0.518 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
..++.|+|.++-...+++++.+.|..||.|..+.+.++..+|-.+||++|+|++...|++|+..+||..|.|..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred c
Q 033181 121 Q 121 (125)
Q Consensus 121 ~ 121 (125)
.
T Consensus 150 F 150 (170)
T KOG0130|consen 150 F 150 (170)
T ss_pred E
Confidence 4
No 52
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.56 E-value=7.7e-16 Score=93.15 Aligned_cols=79 Identities=28% Similarity=0.693 Sum_probs=74.7
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.-|||+|||..+++.+|.-.|++||.+..+.++++..+|+++||||+-|++-.+.-.|+..|||..|.|+.|+|...
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4567999999999999999999999999999999999999999999999999999999999999999999999999653
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.56 E-value=6.6e-15 Score=101.55 Aligned_cols=120 Identities=32% Similarity=0.598 Sum_probs=100.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC-------C--CCCCCCcEEEEcCCCccCCHHHHHHHhccCCcee
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL-------P--LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVV 71 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~-------~--~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~ 71 (125)
|.+.+++..|+. |.|..+.|.+|.|+.+...+... . ...-+-..||++||-..+++++|+.+|.+||.|.
T Consensus 228 f~D~~sVp~aia-LsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie 306 (549)
T KOG0147|consen 228 FCDEQSVPLAIA-LSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIE 306 (549)
T ss_pred EecccchhhHhh-hcCCcccCceeEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccce
Confidence 556777888886 99999999999998664332211 0 0011223389999999999999999999999999
Q ss_pred EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 72 GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 72 ~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+.+..+..+|..+||+||+|.+.++|..|+..|||..|-|+.|+|+...
T Consensus 307 ~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 307 NVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred eeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 99999998899999999999999999999999999999999999997654
No 54
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.56 E-value=1.3e-14 Score=87.81 Aligned_cols=81 Identities=36% Similarity=0.545 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
..+.+|||+||+..++++.|.++|-+.|++..+.++.+..++.+.||||++|.+.++|+-|++.||..++.|++|++.-+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 45679999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred c
Q 033181 121 Q 121 (125)
Q Consensus 121 ~ 121 (125)
.
T Consensus 87 s 87 (203)
T KOG0131|consen 87 S 87 (203)
T ss_pred c
Confidence 6
No 55
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.56 E-value=2e-14 Score=96.94 Aligned_cols=85 Identities=32% Similarity=0.585 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce-e--cCeEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE-L--EGRAMR 116 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~--~g~~i~ 116 (125)
+.+...+||+.+|..+++.+|+.+|.+||.|.++.+++++.++..+|||||.|.++++|.+|+.+||+.+ | ..+.|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3455789999999999999999999999999999999999999999999999999999999999999965 5 357899
Q ss_pred EEEccCCC
Q 033181 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|+|++..+
T Consensus 111 vk~Ad~E~ 118 (510)
T KOG0144|consen 111 VKYADGER 118 (510)
T ss_pred ecccchhh
Confidence 99988543
No 56
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.56 E-value=6.4e-14 Score=91.46 Aligned_cols=79 Identities=47% Similarity=0.799 Sum_probs=75.5
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.++|||+|||..+++++|.++|..||.+..+.+..+..++..+|+|||.|.+.+++..|+..++|..+.|+.|.|.++.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccc
Confidence 5899999999999999999999999999999999987889999999999999999999999999999999999999954
No 57
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.55 E-value=8.4e-14 Score=70.73 Aligned_cols=56 Identities=32% Similarity=0.676 Sum_probs=50.0
Q ss_pred HHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 60 l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
|.++|++||.|..+.+.... .+++||+|.+.++|+.|+..|||..++|++|+|.||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999886552 479999999999999999999999999999999986
No 58
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.53 E-value=1.1e-13 Score=94.20 Aligned_cols=121 Identities=27% Similarity=0.476 Sum_probs=104.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCC---CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEee
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL---YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLY 77 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~---~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~ 77 (125)
|++.++|.+|+..+||..+.|++|.|......+.+..+ ....-+.+++.+.+.++++..|...|..+|.+..+.+..
T Consensus 122 f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~ 201 (369)
T KOG0123|consen 122 FESEESAKKAIEKLNGMLLNGKKIYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMR 201 (369)
T ss_pred eCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEee
Confidence 78999999999999999999999999877654443322 223456789999999999999999999999999999988
Q ss_pred cCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 78 DGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 78 ~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+ ..|++++|+|+.|.+.+.|..|+..+++..+++..+.|.-+..
T Consensus 202 ~-~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 202 D-SIGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred c-CCCCCCCccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 8 5566899999999999999999999999999999888877654
No 59
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.3e-14 Score=91.74 Aligned_cols=85 Identities=25% Similarity=0.520 Sum_probs=80.1
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
.+.+|.|||..||.+..+.+|..+|-+||.|...++..++-+..++.|+||.|+++.+++.||..+||..|+-++|+|++
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 45679999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
.+||.
T Consensus 362 KRPkd 366 (371)
T KOG0146|consen 362 KRPKD 366 (371)
T ss_pred cCccc
Confidence 99873
No 60
>smart00361 RRM_1 RNA recognition motif.
Probab=99.48 E-value=5.2e-13 Score=70.81 Aligned_cols=62 Identities=21% Similarity=0.464 Sum_probs=53.1
Q ss_pred HHHHHHHhc----cCCceeEEE-EeecCCC--CCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 57 TESLTQAFQ----EYGNVVGAR-VLYDGES--GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 57 ~~~l~~~f~----~~g~~~~~~-~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
+++|+++|+ .||.+..+. +..+..+ +.++|++||.|.+.++|..|+..|||..+.|+.|+++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 456777777 999999985 5555555 7889999999999999999999999999999999863
No 61
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.47 E-value=3.6e-13 Score=84.14 Aligned_cols=81 Identities=22% Similarity=0.516 Sum_probs=72.4
Q ss_pred CCCcEEEEcCCCccCCHHHHHH----HhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQ----AFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~----~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
.++.+|||.||+..+..++|++ +|++||.|..+... .+.+.+|.|||.|.+.+.|..|++.|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~---kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF---KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec---CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3445999999999999988877 99999999988765 4577899999999999999999999999999999999
Q ss_pred EEEccCCC
Q 033181 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
++||..+.
T Consensus 84 iqyA~s~s 91 (221)
T KOG4206|consen 84 IQYAKSDS 91 (221)
T ss_pred eecccCcc
Confidence 99998763
No 62
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.45 E-value=7.3e-13 Score=93.98 Aligned_cols=121 Identities=22% Similarity=0.373 Sum_probs=96.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC-------------CC--------------------C---------
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK-------------LP--------------------L--------- 38 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~-------------~~--------------------~--------- 38 (125)
|.++.+|.+|++.|....+...++.+.|+...... .. .
T Consensus 428 fl~p~eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~ 507 (725)
T KOG0110|consen 428 FLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLAR 507 (725)
T ss_pred ecCccchHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchh
Confidence 67888999999999999998888888776211000 00 0
Q ss_pred ---CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCC---CceeEEEEEecCHHHHHHHHHHhCCceecC
Q 033181 39 ---YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG---RSRGYGFVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 39 ---~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~---~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g 112 (125)
.....+.||+.||+++++.+++...|...|.|..+.+...+... .+.|||||+|.+.++|+.|++.|+|+.|+|
T Consensus 508 ~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG 587 (725)
T KOG0110|consen 508 VAEDEETETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG 587 (725)
T ss_pred hhhccccchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC
Confidence 00011349999999999999999999999999999887653221 234999999999999999999999999999
Q ss_pred eEEEEEEcc
Q 033181 113 RAMRVSLAQ 121 (125)
Q Consensus 113 ~~i~v~~~~ 121 (125)
+.|.|+++.
T Consensus 588 H~l~lk~S~ 596 (725)
T KOG0110|consen 588 HKLELKISE 596 (725)
T ss_pred ceEEEEecc
Confidence 999999988
No 63
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=2.2e-13 Score=90.62 Aligned_cols=76 Identities=28% Similarity=0.649 Sum_probs=73.2
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
|.+||+.+...+.++.++..|.+||.|..+.+.-++-+++++||+||+|+-++.|+.|++.+||..++|+.|+|..
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 7899999999999999999999999999999988889999999999999999999999999999999999999864
No 64
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.42 E-value=3.4e-12 Score=85.88 Aligned_cols=119 Identities=28% Similarity=0.355 Sum_probs=94.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCC------------------------------CCCCCcEEEEcC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL------------------------------YAETDFKLFVGN 50 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~------------------------------~~~~~~~l~i~~ 50 (125)
|+++.+|+.|+..|+|.+++|++|+|.+++...-..+. .-+++.++++.|
T Consensus 342 msd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsn 421 (492)
T KOG1190|consen 342 MSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSN 421 (492)
T ss_pred ecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeecc
Confidence 57889999999999999999999999988543211110 124557899999
Q ss_pred CCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec-CeEEEEEEccCC
Q 033181 51 LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLAQGR 123 (125)
Q Consensus 51 lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~ 123 (125)
+|.+.++++++..|.+-|........ .++.+.++++.+.+.+.|-.|+-.+|++.++ +..++|+|++..
T Consensus 422 ip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 422 IPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred CCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999999988765443322 2334568999999999999999999999996 559999998753
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=3e-12 Score=84.49 Aligned_cols=82 Identities=22% Similarity=0.437 Sum_probs=70.6
Q ss_pred CCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC-ceecCeEE
Q 033181 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG-VELEGRAM 115 (125)
Q Consensus 37 ~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~~~g~~i 115 (125)
++.+....+|||++|...+++.+|+++|.+||.+..+.+... .++|||+|.++++|+.|..+.-+ ..|+|.+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEE
Confidence 344556789999999999999999999999999999988755 45899999999999999886665 45799999
Q ss_pred EEEEccCCC
Q 033181 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
+|.|..+++
T Consensus 296 ~i~Wg~~~~ 304 (377)
T KOG0153|consen 296 KIKWGRPKQ 304 (377)
T ss_pred EEEeCCCcc
Confidence 999998843
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=8.3e-13 Score=85.36 Aligned_cols=71 Identities=34% Similarity=0.655 Sum_probs=67.4
Q ss_pred EEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
.|||+|||...++.+|+.+|.+||.|.++-++.+ |+||+.++...++.+++.|||.+|.|..|.|.-++.|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 5899999999999999999999999999999855 9999999999999999999999999999999988876
No 67
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.38 E-value=1e-11 Score=77.76 Aligned_cols=116 Identities=19% Similarity=0.391 Sum_probs=95.8
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC-----------------------------------------C---
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK-----------------------------------------L--- 36 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~-----------------------------------------~--- 36 (125)
|.+++.|..|++.|+|..+.|++++++|+.....- +
T Consensus 59 Fk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~ 138 (221)
T KOG4206|consen 59 FKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPF 138 (221)
T ss_pred ecChhHHHHHHHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCc
Confidence 67889999999999999999999999998432100 0
Q ss_pred -CCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec-CeE
Q 033181 37 -PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRA 114 (125)
Q Consensus 37 -~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~ 114 (125)
....+++..+++.++|..++.+.+..+|.+|.....+.+... ..+.+||+|.+...+..|...+++..|- ...
T Consensus 139 ~~~~~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~ 213 (221)
T KOG4206|consen 139 LAQMAPPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNT 213 (221)
T ss_pred cccCCCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCce
Confidence 111345678999999999999999999999988888877655 2468999999999999999999999886 888
Q ss_pred EEEEEcc
Q 033181 115 MRVSLAQ 121 (125)
Q Consensus 115 i~v~~~~ 121 (125)
+.+.+++
T Consensus 214 m~i~~a~ 220 (221)
T KOG4206|consen 214 MQITFAK 220 (221)
T ss_pred EEecccC
Confidence 8888875
No 68
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.36 E-value=3.3e-12 Score=84.76 Aligned_cols=83 Identities=28% Similarity=0.466 Sum_probs=78.6
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
.+|...|||=.|.+.+++++|.-+|+.||.|..+.++++..+|..-.||||+|++.++++.|.-+|.+.-|++++|+|.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 033181 120 AQG 122 (125)
Q Consensus 120 ~~~ 122 (125)
+++
T Consensus 316 SQS 318 (479)
T KOG0415|consen 316 SQS 318 (479)
T ss_pred hhh
Confidence 763
No 69
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.34 E-value=4.9e-12 Score=90.79 Aligned_cols=75 Identities=25% Similarity=0.535 Sum_probs=70.0
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+++|||++|+..+++.+|.++|.+||.|..+.+... +++|||.+..+++|.+|+.+|++..+.++.|++.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~------R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP------RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccC------CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 579999999999999999999999999999987654 78999999999999999999999999999999999875
Q ss_pred C
Q 033181 123 R 123 (125)
Q Consensus 123 ~ 123 (125)
+
T Consensus 495 ~ 495 (894)
T KOG0132|consen 495 K 495 (894)
T ss_pred C
Confidence 4
No 70
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.33 E-value=1.3e-11 Score=76.29 Aligned_cols=84 Identities=19% Similarity=0.353 Sum_probs=75.4
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEY-GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~-g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
.......+|+..+|.-+.+..+...|.++ |.+.+.++.++..+|.++|||||+|++.+.|.-|-..||+.-|.++-|.|
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred ccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 34455678999999999999999999988 78888899899999999999999999999999999999999999999999
Q ss_pred EEccC
Q 033181 118 SLAQG 122 (125)
Q Consensus 118 ~~~~~ 122 (125)
.+--|
T Consensus 125 ~vmpp 129 (214)
T KOG4208|consen 125 HVMPP 129 (214)
T ss_pred EEeCc
Confidence 87543
No 71
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=7.4e-12 Score=80.38 Aligned_cols=98 Identities=30% Similarity=0.505 Sum_probs=80.3
Q ss_pred CeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHH
Q 033181 21 GRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMET 100 (125)
Q Consensus 21 ~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~ 100 (125)
.|+|.|+.+...... -.++.|||+-|...-++++++.+|.+||.+.++.+.+. ..|..+|++||.|.+.-+|+.
T Consensus 2 nrpiqvkpadsesrg-----~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg-~dg~sKGCAFVKf~s~~eAqa 75 (371)
T KOG0146|consen 2 NRPIQVKPADSESRG-----GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRG-PDGNSKGCAFVKFSSHAEAQA 75 (371)
T ss_pred CCCccccccccccCC-----ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecC-CCCCCCCceEEEeccchHHHH
Confidence 356667666543222 25678999999999999999999999999999988887 678899999999999999999
Q ss_pred HHHHhCCce-ec--CeEEEEEEccCCC
Q 033181 101 ALESLNGVE-LE--GRAMRVSLAQGRR 124 (125)
Q Consensus 101 a~~~l~~~~-~~--g~~i~v~~~~~~~ 124 (125)
||..|||.. +- ...|.|+|++..|
T Consensus 76 AI~aLHgSqTmpGASSSLVVK~ADTdk 102 (371)
T KOG0146|consen 76 AINALHGSQTMPGASSSLVVKFADTDK 102 (371)
T ss_pred HHHHhcccccCCCCccceEEEeccchH
Confidence 999999954 43 4678899987543
No 72
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.31 E-value=7.2e-12 Score=83.18 Aligned_cols=121 Identities=22% Similarity=0.392 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCC-CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLY-AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG 79 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~-~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~ 79 (125)
|++++.+.+++. ..-+.+.|+.|.+..+.+........ ......|+|++||..++++++++.|.+||.|..+.+..+.
T Consensus 55 f~~~~~v~~vl~-~~~h~~dgr~ve~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~ 133 (311)
T KOG4205|consen 55 FATPEGVDAVLN-ARTHKLDGRSVEPKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK 133 (311)
T ss_pred cCCCcchheeec-ccccccCCccccceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc
Confidence 556666666666 33467889988888776554433222 2245689999999999999999999999999999999998
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 80 ~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
.+..+++|+||.|.+.+++..++. ...+.|.++.+.|.-|.|+
T Consensus 134 ~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk 176 (311)
T KOG4205|consen 134 TTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPK 176 (311)
T ss_pred cccccccceeeEeccccccceecc-cceeeecCceeeEeeccch
Confidence 899999999999999999999877 5778899999999988876
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.30 E-value=1.6e-11 Score=83.51 Aligned_cols=80 Identities=29% Similarity=0.503 Sum_probs=72.5
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhc-cCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~-~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
...+.+||.|+|.++.+.+|++++. .-|.|.++.+..+ .+|+++|++.|+|++++.+++|++.||.+.+.|+.|.|.-
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKE 120 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKE 120 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEec
Confidence 3456799999999999999999997 5689999999888 7899999999999999999999999999999999999975
Q ss_pred cc
Q 033181 120 AQ 121 (125)
Q Consensus 120 ~~ 121 (125)
..
T Consensus 121 d~ 122 (608)
T KOG4212|consen 121 DH 122 (608)
T ss_pred cC
Confidence 43
No 74
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.27 E-value=1.2e-10 Score=64.89 Aligned_cols=78 Identities=21% Similarity=0.251 Sum_probs=67.7
Q ss_pred cEEEEcCCCccCCHHHHHHHhccC--CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec----CeEEEE
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEY--GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE----GRAMRV 117 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~--g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~----g~~i~v 117 (125)
++|+|+|+|..++.++|.+++... |....+.++.+..++.+.|||||.|.+++.+..-...++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999998888643 67888899999888899999999999999999999999998874 456677
Q ss_pred EEcc
Q 033181 118 SLAQ 121 (125)
Q Consensus 118 ~~~~ 121 (125)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7765
No 75
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.1e-10 Score=71.40 Aligned_cols=103 Identities=28% Similarity=0.398 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC---------------------CCCCCCCCcEEEEcCCCccCCHHH
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK---------------------LPLYAETDFKLFVGNLSWSVTTES 59 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~---------------------~~~~~~~~~~l~i~~lp~~~~~~~ 59 (125)
|+++.+|+.||..-||+.+.|+.|+|+++...... .++...+...|.|.+||.+.++.+
T Consensus 52 FEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQD 131 (241)
T KOG0105|consen 52 FEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQD 131 (241)
T ss_pred ecCccchhhhhhcccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHH
Confidence 89999999999999999999999999998643211 122234557899999999999999
Q ss_pred HHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 033181 60 LTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 60 l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
|+++..+-|.+.+..+.++ |++.|+|...++.+-|+++|....+
T Consensus 132 LKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 132 LKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred HHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhccccc
Confidence 9999999999999887765 4799999999999999999998665
No 76
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.20 E-value=2.8e-11 Score=76.24 Aligned_cols=112 Identities=29% Similarity=0.478 Sum_probs=91.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC------CC---------CCCCCCCCCcEEEEcCCCccCCHHHHHHHhc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP------KP---------KLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~------~~---------~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~ 65 (125)
|+++.+|..|+..+||+.+.+..+.++|+... .. ...++....+.+.+.++.....+.+|.+.|.
T Consensus 42 fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~ 121 (216)
T KOG0106|consen 42 FEDPRDADDAVHDLDGKELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFR 121 (216)
T ss_pred cCchhhhhcccchhcCceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhc
Confidence 68899999999999999999988899988742 11 0112234567888999999999999999999
Q ss_pred cCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
++|++..... ..+++||.|...+++..|+..+++..+.++.|.+...
T Consensus 122 ~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 122 PAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred ccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeeccc
Confidence 9999844332 3568999999999999999999999999999998443
No 77
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.20 E-value=5.3e-10 Score=74.04 Aligned_cols=118 Identities=23% Similarity=0.327 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHhcCCccccCeEEEEeccCCCCC---------------------------------CCCCCCCCCcEEEE
Q 033181 2 STVEDCNAVIENLDGREYLGRILRVNFSDKPKP---------------------------------KLPLYAETDFKLFV 48 (125)
Q Consensus 2 ~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~---------------------------------~~~~~~~~~~~l~i 48 (125)
-..+++..|+..|++..+.|+.|+|+.++..-. ..+......++|.+
T Consensus 191 ~K~ESVeLA~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~ 270 (382)
T KOG1548|consen 191 IKRESVELAIKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVIL 270 (382)
T ss_pred ecccHHHHHHHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEe
Confidence 356889999999999999999999987732100 01112234578888
Q ss_pred cCCCc----cCC-------HHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 49 GNLSW----SVT-------TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 49 ~~lp~----~~~-------~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
.|+=. ..+ .++|..-+.+||.+..+.+.- ..+.|.+-|.|.+.+.|..||+.|+|..++|+.|..
T Consensus 271 kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d----~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A 346 (382)
T KOG1548|consen 271 KNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD----RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTA 346 (382)
T ss_pred eecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec----cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEE
Confidence 88743 122 256778899999999987642 235689999999999999999999999999999999
Q ss_pred EEccCC
Q 033181 118 SLAQGR 123 (125)
Q Consensus 118 ~~~~~~ 123 (125)
+....+
T Consensus 347 ~i~DG~ 352 (382)
T KOG1548|consen 347 SIWDGK 352 (382)
T ss_pred EEeCCc
Confidence 887654
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.20 E-value=6.6e-11 Score=80.62 Aligned_cols=75 Identities=29% Similarity=0.521 Sum_probs=67.4
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
...|+|+|+|||.+.|+..|++.|.++|.+.+..+ ...|+.+| .|.|.++++|++|+..++|..++|+.|+|.|.
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadi---me~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y~ 608 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADI---MENGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTYF 608 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhh---hccCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeeeC
Confidence 45689999999999999999999999999998877 35566665 89999999999999999999999999999874
No 79
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.16 E-value=2.6e-09 Score=72.36 Aligned_cols=116 Identities=27% Similarity=0.438 Sum_probs=90.7
Q ss_pred CCCHHHHHHHHHhcCCcccc--CeEEEEeccCCCC---------CC--------CC------------------------
Q 033181 1 MSTVEDCNAVIENLDGREYL--GRILRVNFSDKPK---------PK--------LP------------------------ 37 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~--~~~i~v~~~~~~~---------~~--------~~------------------------ 37 (125)
|.+++.|+.|-..|+|..|+ .+.++|.|+.-.. .+ ..
T Consensus 195 y~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p 274 (492)
T KOG1190|consen 195 YTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAP 274 (492)
T ss_pred ccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCc
Confidence 67889999999999998885 4788888773110 00 00
Q ss_pred ---------------CCCCC--CcEEEEcCCC-ccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHH
Q 033181 38 ---------------LYAET--DFKLFVGNLS-WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEME 99 (125)
Q Consensus 38 ---------------~~~~~--~~~l~i~~lp-~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~ 99 (125)
....+ +..|-+.||. ..++.+.|..+|+.||.|.++.+...+. .-|.|+|.+...|+
T Consensus 275 ~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAq 349 (492)
T KOG1190|consen 275 LAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQ 349 (492)
T ss_pred ccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHH
Confidence 00001 3566777775 4688999999999999999999987732 35999999999999
Q ss_pred HHHHHhCCceecCeEEEEEEcc
Q 033181 100 TALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 100 ~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.|+..|+|..|.|++|+|.+++
T Consensus 350 LA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 350 LAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred HHHHHhhcceecCceEEEeecc
Confidence 9999999999999999999986
No 80
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.12 E-value=1.4e-09 Score=74.96 Aligned_cols=116 Identities=21% Similarity=0.260 Sum_probs=89.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC------CCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeE-E
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL------PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG-A 73 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~------~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~-~ 73 (125)
|.+.+++.+|++ .+...+..+-|.|..+...+... +....++..|.+++||+..++++|.++|+..--+.. +
T Consensus 56 ~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi 134 (510)
T KOG4211|consen 56 FTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGI 134 (510)
T ss_pred eechHHHHHHHH-hhHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccce
Confidence 578899999999 77788999999998775443211 111135678999999999999999999998755444 3
Q ss_pred EEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 74 RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 74 ~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
.++.+ ..+.+.|-|||.|++.+.|+.|+.. |...|+-+-|.|--
T Consensus 135 ~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 135 LLPMD-QRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFR 178 (510)
T ss_pred eeecc-CCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeeh
Confidence 34444 5677889999999999999999984 66777777776643
No 81
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.10 E-value=6.1e-10 Score=77.80 Aligned_cols=122 Identities=16% Similarity=0.164 Sum_probs=86.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCC-------------------CCcEEEEcCCC--ccC-CH-
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAE-------------------TDFKLFVGNLS--WSV-TT- 57 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~-------------------~~~~l~i~~lp--~~~-~~- 57 (125)
|.++.....|+..+||+.++++++.+..+............ +...|.+.|+= .++ ++
T Consensus 338 y~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~ 417 (500)
T KOG0120|consen 338 YCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDE 417 (500)
T ss_pred eeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchH
Confidence 45677889999999999999999999877543322111111 11222222221 111 11
Q ss_pred ------HHHHHHhccCCceeEEEEeecCCC---CCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 58 ------ESLTQAFQEYGNVVGARVLYDGES---GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 58 ------~~l~~~f~~~g~~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
++++..|..||.+..+.++++... ....|..||+|.+.++++.|...|+|.++.|+.|.+.|-.+
T Consensus 418 EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 418 EYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred HHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 567888899999999998877222 23346789999999999999999999999999999998654
No 82
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.09 E-value=1e-09 Score=70.59 Aligned_cols=81 Identities=32% Similarity=0.581 Sum_probs=72.8
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
...+.|+|.|||..+.+++|+++|..||.+..+.+.++ ..|.+.|.|-|.|...++|..+++.++|..++|+.+++...
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34478999999999999999999999998888888887 67888899999999999999999999999999999888765
Q ss_pred cC
Q 033181 121 QG 122 (125)
Q Consensus 121 ~~ 122 (125)
.+
T Consensus 160 ~~ 161 (243)
T KOG0533|consen 160 SS 161 (243)
T ss_pred cC
Confidence 54
No 83
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.09 E-value=7.5e-09 Score=69.55 Aligned_cols=76 Identities=22% Similarity=0.322 Sum_probs=66.8
Q ss_pred CCcEEEEcCCCc-cCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 42 TDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~-~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
+++.++|.+|.. .++.+.|..+|=.||.|.++.+...+ .|.+.|++.+....++|+..||+..+-|.+|.++++
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~S 360 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVS 360 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeec
Confidence 457889999986 57888999999999999999987663 468999999999999999999999999999999987
Q ss_pred cC
Q 033181 121 QG 122 (125)
Q Consensus 121 ~~ 122 (125)
+-
T Consensus 361 kQ 362 (494)
T KOG1456|consen 361 KQ 362 (494)
T ss_pred cc
Confidence 63
No 84
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.05 E-value=3e-09 Score=66.92 Aligned_cols=81 Identities=21% Similarity=0.406 Sum_probs=67.2
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC-CCCceeEEEEEecCHHHHHHHHHHhCCceec---CeEEEEE
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE-SGRSRGYGFVCYSTKAEMETALESLNGVELE---GRAMRVS 118 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~i~v~ 118 (125)
-++|||.+||.++-..+|..+|+.|...+...+-.... .+..+.++|+.|.+.+.|..|++.|||..++ +..|++.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 47899999999999999999999997666665544432 2345579999999999999999999999885 7889999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++++.
T Consensus 114 lAKSN 118 (284)
T KOG1457|consen 114 LAKSN 118 (284)
T ss_pred ehhcC
Confidence 98753
No 85
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.05 E-value=2e-09 Score=72.21 Aligned_cols=119 Identities=16% Similarity=0.211 Sum_probs=88.5
Q ss_pred CCCHHHHHHHHHh--cCCccccCeEEEEeccCCCCCCCC--CCCCCCcEEEEc--CCCccCCHHHHHHHhccCCceeEEE
Q 033181 1 MSTVEDCNAVIEN--LDGREYLGRILRVNFSDKPKPKLP--LYAETDFKLFVG--NLSWSVTTESLTQAFQEYGNVVGAR 74 (125)
Q Consensus 1 f~~~~~a~~A~~~--~~g~~~~~~~i~v~~~~~~~~~~~--~~~~~~~~l~i~--~lp~~~~~~~l~~~f~~~g~~~~~~ 74 (125)
|++.+.|..++.- -|...+.|.+..+++++.+....+ ....++..|.+. |--..++-+.|..++.+.|++.++.
T Consensus 74 fedi~~akn~Vnfaa~n~i~i~gq~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIv 153 (494)
T KOG1456|consen 74 FEDIEGAKNCVNFAADNQIYIAGQQALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIV 153 (494)
T ss_pred eccccchhhheehhccCcccccCchhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEE
Confidence 5677777776653 345667788888888865433222 122334444443 4445688899999999999999998
Q ss_pred EeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--cCeEEEEEEccCCC
Q 033181 75 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL--EGRAMRVSLAQGRR 124 (125)
Q Consensus 75 ~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~~~~~~ 124 (125)
+... + .-.|.|+|++.+.|++|...|||..| +.+.|+|.||+|.|
T Consensus 154 Ifkk--n---gVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~r 200 (494)
T KOG1456|consen 154 IFKK--N---GVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPTR 200 (494)
T ss_pred EEec--c---ceeeEEeechhHHHHHHHhhcccccccccceeEEEEecCcce
Confidence 8755 3 34699999999999999999999987 67899999999875
No 86
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.04 E-value=4.1e-10 Score=78.67 Aligned_cols=122 Identities=23% Similarity=0.451 Sum_probs=99.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC------------------CCCCCCCCCcEEEEcCCCccCCHHHHHH
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP------------------KLPLYAETDFKLFVGNLSWSVTTESLTQ 62 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~------------------~~~~~~~~~~~l~i~~lp~~~~~~~l~~ 62 (125)
|.+.++|..|+. +++..+.|.++++........ .........+.+++++||..+++..+.+
T Consensus 230 ~~s~~~at~~~~-~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~E 308 (500)
T KOG0120|consen 230 FRSISEATEAMA-LDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKE 308 (500)
T ss_pred ecCCCchhhhhc-ccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHH
Confidence 456778888887 888888888888764321111 0111223446899999999999999999
Q ss_pred HhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 63 AFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 63 ~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
.+..||.+....+..+..+|.++||+|.+|.++.....|+..|||..++++.|.++.|-..
T Consensus 309 ll~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 309 LLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred HHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 9999999999999988888999999999999999999999999999999999999877543
No 87
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=99.04 E-value=8.8e-10 Score=70.35 Aligned_cols=106 Identities=26% Similarity=0.530 Sum_probs=84.1
Q ss_pred CCccccCeEEEEeccCCC-CCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEec
Q 033181 15 DGREYLGRILRVNFSDKP-KPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYS 93 (125)
Q Consensus 15 ~g~~~~~~~i~v~~~~~~-~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~ 93 (125)
+++.++..++++.-.+.- +.....-+..+..||.+.|..+.+++.|.+.|.+|-......+++++.+|+.+||+||.|.
T Consensus 161 ~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~ 240 (290)
T KOG0226|consen 161 EKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFR 240 (290)
T ss_pred ccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeec
Confidence 344455555554433221 1122223456789999999999999999999999988777888999999999999999999
Q ss_pred CHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 94 TKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 94 ~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
+..++..|++.++|..++++.|+++-+
T Consensus 241 ~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 241 DPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred CHHHHHHHHHhhcccccccchhHhhhh
Confidence 999999999999999999999887654
No 88
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.99 E-value=6.5e-10 Score=73.99 Aligned_cols=81 Identities=38% Similarity=0.693 Sum_probs=71.4
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
..+.++|++|+++++++.|+..|.+||.+..+.+.+++.++..+||+||+|.+.+...+++. ..-+.|.|+.|.+.-+-
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccceecc
Confidence 56789999999999999999999999999999999999999999999999998888888877 34577888888777665
Q ss_pred CC
Q 033181 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 84 ~r 85 (311)
T KOG4205|consen 84 SR 85 (311)
T ss_pred Cc
Confidence 54
No 89
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.98 E-value=2.6e-09 Score=75.26 Aligned_cols=79 Identities=39% Similarity=0.598 Sum_probs=72.2
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
+..|||.+|...+...+|+.+|++||.|.-..++.+..+.-.+.|+||++.+...|.+||..||...|.|+-|.|.-++
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4689999999999999999999999999999888776666678899999999999999999999999999999998765
No 90
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.95 E-value=4.5e-09 Score=72.54 Aligned_cols=79 Identities=24% Similarity=0.485 Sum_probs=67.2
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
..|||+|||.+++..+|+++|..||.|....+..-...++..+||||+|.+...++.++.+ +-..|+++++.|.-.++.
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 4599999999999999999999999999987766544455559999999999999999985 567789999999876653
No 91
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.93 E-value=1.2e-08 Score=64.30 Aligned_cols=63 Identities=22% Similarity=0.306 Sum_probs=52.3
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
.+|||-||....++++|+..|+.|.....+++.. .+|. ..+|++|+..+.|..|+..|+|..|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g~--~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGGM--PVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCCc--ceEeecHHHHHHHHHHHHHhhccee
Confidence 4799999999999999999999997655555532 2333 3799999999999999999999776
No 92
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.91 E-value=1.8e-08 Score=66.97 Aligned_cols=81 Identities=22% Similarity=0.518 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 111 (125)
...++.|||+|||.++|.+++..+++.+|-|.. |.+-++ ..|..+|=|.+.|-..+++..|+..|++..+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd-~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRD-NQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEec-CCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 345678999999999999999999999996554 445555 55899999999999999999999999999999
Q ss_pred CeEEEEEEcc
Q 033181 112 GRAMRVSLAQ 121 (125)
Q Consensus 112 g~~i~v~~~~ 121 (125)
|+.|+|+-|+
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999998664
No 93
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=2.2e-09 Score=74.88 Aligned_cols=72 Identities=31% Similarity=0.430 Sum_probs=64.0
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
.+..+|+|-|||..++.++|..+|+.||+|..+...+. .+|.+||+|.+..+|+.|++.|++..|.|++|++
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~-----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~ 144 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN-----KRGIVFVEFYDVRDAERALKALNRREIAGKRIKR 144 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc-----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcC
Confidence 34578999999999999999999999999999655433 4689999999999999999999999999998873
No 94
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.82 E-value=4.8e-08 Score=68.34 Aligned_cols=58 Identities=22% Similarity=0.276 Sum_probs=51.8
Q ss_pred HHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 58 ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 58 ~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
+++.+.|..+|.+..+.+... ..|+.||.|.+.+.|..|++.|||+.+.|+.|.+.|-
T Consensus 468 edV~Eec~k~g~v~hi~vd~n-----s~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 468 EDVIEECGKHGKVCHIFVDKN-----SAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred HHHHHHHHhcCCeeEEEEccC-----CCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 578888999999999988654 2379999999999999999999999999999999874
No 95
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.81 E-value=2.8e-08 Score=71.52 Aligned_cols=85 Identities=27% Similarity=0.481 Sum_probs=72.9
Q ss_pred CCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecC---CCCCceeEEEEEecCHHHHHHHHHHhCCceecCe
Q 033181 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG---ESGRSRGYGFVCYSTKAEMETALESLNGVELEGR 113 (125)
Q Consensus 37 ~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~---~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 113 (125)
..+++..+.+|++||+++++++.|...|..||++..+.+.... .....+.++||.|-++.++++|+..|+|..+.+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 3456677899999999999999999999999999998775442 2233456899999999999999999999999999
Q ss_pred EEEEEEcc
Q 033181 114 AMRVSLAQ 121 (125)
Q Consensus 114 ~i~v~~~~ 121 (125)
.+++-|++
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 99999875
No 96
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.80 E-value=7.8e-09 Score=65.31 Aligned_cols=71 Identities=27% Similarity=0.625 Sum_probs=64.6
Q ss_pred EEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
.+||+++|+...+.+|..+|..||.+..+.+. .||+||+|.+..+|..|+..+++..|+|-.+.+.+++..
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 58999999999999999999999999887664 458899999999999999999999999988999998853
No 97
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.73 E-value=4.2e-08 Score=63.18 Aligned_cols=80 Identities=28% Similarity=0.480 Sum_probs=73.1
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.....+|++++....+.+++..+|..||.+..+.++.+...+.++|++|++|.+.+.++.++. |+|..|-|..+.+.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 345689999999999888899999999999999899888888899999999999999999999 9999999999998875
Q ss_pred c
Q 033181 121 Q 121 (125)
Q Consensus 121 ~ 121 (125)
+
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 98
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.67 E-value=1.6e-07 Score=50.54 Aligned_cols=69 Identities=22% Similarity=0.330 Sum_probs=46.1
Q ss_pred cEEEEcCCCccCCHHHH----HHHhccCC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 44 FKLFVGNLSWSVTTESL----TQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l----~~~f~~~g-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
..|+|.|||...+...+ ++++..+| .+..+. .+.|++.|.+.+.|.+|.+.|+|..+.|.+|.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~----------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS----------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe----------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 46899999998887654 45555665 455431 2479999999999999999999999999999999
Q ss_pred EccC
Q 033181 119 LAQG 122 (125)
Q Consensus 119 ~~~~ 122 (125)
|...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 9743
No 99
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.60 E-value=5.3e-07 Score=62.62 Aligned_cols=77 Identities=23% Similarity=0.441 Sum_probs=63.4
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.....|.+.+|||+.++++|.++|+.++ |..+.++ ..+|++.|-|||+|.+.++++.|++ .+...++.+-|.|--+
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~--r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~ 83 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIP--RRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTA 83 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEe--ccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEcc
Confidence 3456788899999999999999999985 5554444 4478999999999999999999999 4777788888888665
Q ss_pred c
Q 033181 121 Q 121 (125)
Q Consensus 121 ~ 121 (125)
.
T Consensus 84 ~ 84 (510)
T KOG4211|consen 84 G 84 (510)
T ss_pred C
Confidence 4
No 100
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.58 E-value=5e-08 Score=65.87 Aligned_cols=118 Identities=13% Similarity=0.180 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC-------------------C-------CCCCCCCCCCCcEEEEcCCCcc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK-------------------P-------KPKLPLYAETDFKLFVGNLSWS 54 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~-------------------~-------~~~~~~~~~~~~~l~i~~lp~~ 54 (125)
|+.+++|+.|+.. +...++.|.|.+..++. . +...-+...+...|.+++||..
T Consensus 213 fa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~ 291 (508)
T KOG1365|consen 213 FACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYE 291 (508)
T ss_pred ecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChh
Confidence 6778888888884 33345545454433310 0 0111122233457899999999
Q ss_pred CCHHHHHHHhccCCc-eeE--EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 55 VTTESLTQAFQEYGN-VVG--ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 55 ~~~~~l~~~f~~~g~-~~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.+++.++|..|.. +.. +.+..+ ..|.+.|-|||+|.+.+.|..|....|++.+.++-|.|-.+
T Consensus 292 AtvEdIL~FlgdFa~~i~f~gVHmv~N-~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~ 359 (508)
T KOG1365|consen 292 ATVEDILDFLGDFATDIRFQGVHMVLN-GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPC 359 (508)
T ss_pred hhHHHHHHHHHHHhhhcccceeEEEEc-CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeec
Confidence 999999999998863 444 566666 66888999999999999999999999988887777777543
No 101
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.52 E-value=4.7e-08 Score=61.43 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
+-+.+|||.|+...++++.|.++|-+-|.|..+.++.. ..++.+ |+||.|.++....-|+.-+||-.+.+..+.+.+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~-~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r 84 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSG-QDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLR 84 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCC-ccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccc
Confidence 34678999999999999999999999999999888766 455555 9999999999999999999999999998888775
Q ss_pred c
Q 033181 121 Q 121 (125)
Q Consensus 121 ~ 121 (125)
.
T Consensus 85 ~ 85 (267)
T KOG4454|consen 85 C 85 (267)
T ss_pred c
Confidence 4
No 102
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.47 E-value=5.4e-07 Score=51.30 Aligned_cols=69 Identities=22% Similarity=0.377 Sum_probs=43.3
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc-----eecCeEEEEE
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV-----ELEGRAMRVS 118 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~-----~~~g~~i~v~ 118 (125)
+.|++.+++..++.++|+..|++||.|.++-+... ...|+|.|.+.+.|+.++..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 57899999999999999999999999998877544 236999999999999999876644 4555555544
No 103
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.47 E-value=6.9e-07 Score=59.68 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=62.2
Q ss_pred cEEEEcCCCccCCHHH------HHHHhccCCceeEEEEeecCCC---CCceeEEEEEecCHHHHHHHHHHhCCceecCeE
Q 033181 44 FKLFVGNLSWSVTTES------LTQAFQEYGNVVGARVLYDGES---GRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~------l~~~f~~~g~~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 114 (125)
..+||-+||+.+..++ -.++|.+||.|..+.+.....+ ....-..||+|.+.++|.+|+...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4689999998876654 2577999999999987654311 111122599999999999999999999999999
Q ss_pred EEEEEccC
Q 033181 115 MRVSLAQG 122 (125)
Q Consensus 115 i~v~~~~~ 122 (125)
|++.|...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99998654
No 104
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.44 E-value=5.4e-07 Score=59.86 Aligned_cols=121 Identities=24% Similarity=0.381 Sum_probs=90.9
Q ss_pred CCCHHHHHHHHHhcCC-ccccCeEEEEeccCCCCC-----CCCCCCCCCcEEE-EcCCCccCCHHHHHHHhccCCceeEE
Q 033181 1 MSTVEDCNAVIENLDG-REYLGRILRVNFSDKPKP-----KLPLYAETDFKLF-VGNLSWSVTTESLTQAFQEYGNVVGA 73 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g-~~~~~~~i~v~~~~~~~~-----~~~~~~~~~~~l~-i~~lp~~~~~~~l~~~f~~~g~~~~~ 73 (125)
|+..+.+..|+. +.+ +...++.+.......... ..........+++ +++++..++.++|+.+|..+|.+..+
T Consensus 137 f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~ 215 (285)
T KOG4210|consen 137 FAGKSQFFAALE-ESGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSV 215 (285)
T ss_pred cccHHHHHHHHH-hhhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceee
Confidence 567777888887 444 455555444433322111 1111122334455 89999999999999999999999999
Q ss_pred EEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 74 RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 74 ~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
.++....++...|++++.|........++.. ....++++.+.+.+..++
T Consensus 216 r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 216 RLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred ccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCC
Confidence 9998889999999999999999999999887 778899999999888765
No 105
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.40 E-value=1.7e-07 Score=60.14 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=61.4
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCC--------C----CceeEEEEEecCHHHHHHHHHHhCCce
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES--------G----RSRGYGFVCYSTKAEMETALESLNGVE 109 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~--------~----~~~g~~fv~f~~~~~a~~a~~~l~~~~ 109 (125)
....||+++||+.++...|+++|+.||.|-++.+.....+ | ..-.-|.|+|.+...|..+...|||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3468999999999999999999999999999988765433 2 122346899999999999999999999
Q ss_pred ecCeE
Q 033181 110 LEGRA 114 (125)
Q Consensus 110 ~~g~~ 114 (125)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 106
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=98.31 E-value=3.2e-06 Score=54.43 Aligned_cols=90 Identities=29% Similarity=0.390 Sum_probs=78.4
Q ss_pred HHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCC
Q 033181 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 83 (125)
Q Consensus 4 ~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~ 83 (125)
..-|..|-.+|++....+++++|.|+.. ..|||.||+..++.+.+...|+.||.+....+..+ ..++
T Consensus 4 rt~ae~ak~eLd~~~~~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k 70 (275)
T KOG0115|consen 4 RTLAEIAKRELDGRFPKGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGK 70 (275)
T ss_pred ccHHHHHHHhcCCCCCCCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-cccc
Confidence 3457888899999999999999999952 47999999999999999999999999988776666 5677
Q ss_pred ceeEEEEEecCHHHHHHHHHHhC
Q 033181 84 SRGYGFVCYSTKAEMETALESLN 106 (125)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~ 106 (125)
+.+-++|.|.....+..|+..+.
T Consensus 71 ~t~eg~v~~~~k~~a~~a~rr~~ 93 (275)
T KOG0115|consen 71 PTREGIVEFAKKPNARKAARRCR 93 (275)
T ss_pred ccccchhhhhcchhHHHHHHHhc
Confidence 88889999999999999998774
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.26 E-value=1.2e-06 Score=44.10 Aligned_cols=29 Identities=41% Similarity=0.831 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEecc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~ 29 (125)
|+++++|.+|++.|||..+.|++|+|.||
T Consensus 28 f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 28 FASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp ESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999999999999999986
No 108
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.17 E-value=1.3e-05 Score=58.27 Aligned_cols=75 Identities=21% Similarity=0.391 Sum_probs=64.2
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeE-EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVG-ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
+.|-+.|+|++++-+|+.++|..|-..-. +.+-+. ..|.+.|-|.|.|++.+.|.+|...|++..|.++.|.+..
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 37889999999999999999999964333 334444 7799999999999999999999999999999999988753
No 109
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=2e-05 Score=56.02 Aligned_cols=75 Identities=29% Similarity=0.444 Sum_probs=61.6
Q ss_pred CcEEEEcCCCccCCH------HHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec-CeEE
Q 033181 43 DFKLFVGNLSWSVTT------ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRAM 115 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~------~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~i 115 (125)
+..|.|.|+|---.. ..|.+.|+.+|.+....++.+..+| ..|+.|++|.+..+|+.|++.|||+.|+ ++..
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 467889999975443 3577889999999998888775544 8999999999999999999999999985 6666
Q ss_pred EEE
Q 033181 116 RVS 118 (125)
Q Consensus 116 ~v~ 118 (125)
.+.
T Consensus 137 ~v~ 139 (698)
T KOG2314|consen 137 FVR 139 (698)
T ss_pred Eee
Confidence 664
No 110
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.13 E-value=2.9e-06 Score=56.93 Aligned_cols=81 Identities=26% Similarity=0.392 Sum_probs=70.6
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeE
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 114 (125)
..++||-++|..++.+++..+|.+++.|.. +.+-.+..++.+++-|.|.|.+...|+.|+.-+++..+.+..
T Consensus 66 ~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ 145 (351)
T KOG1995|consen 66 NETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNT 145 (351)
T ss_pred cccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCC
Confidence 457999999999999999999999886543 345556678999999999999999999999999999999999
Q ss_pred EEEEEccCC
Q 033181 115 MRVSLAQGR 123 (125)
Q Consensus 115 i~v~~~~~~ 123 (125)
|+|.++..+
T Consensus 146 ikvs~a~~r 154 (351)
T KOG1995|consen 146 IKVSLAERR 154 (351)
T ss_pred chhhhhhhc
Confidence 999888754
No 111
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.08 E-value=4e-06 Score=62.12 Aligned_cols=106 Identities=19% Similarity=0.278 Sum_probs=79.6
Q ss_pred HHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCC
Q 033181 4 VEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR 83 (125)
Q Consensus 4 ~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~ 83 (125)
..++-.|..++.+..|....+++.+..+ .....+.+++++|+.+..-..|...|..||.+..+-+-. |
T Consensus 423 ~dmtp~ak~e~s~~~I~~g~~r~glG~~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h----g- 490 (975)
T KOG0112|consen 423 TDMTPSAKFEESGPLIGNGTHRIGLGQP-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH----G- 490 (975)
T ss_pred cccCcccchhhcCCccccCccccccccc-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc----C-
Confidence 3444455555666555544445444432 234567899999999999999999999999998765532 2
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCceecC--eEEEEEEccC
Q 033181 84 SRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLAQG 122 (125)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~ 122 (125)
..|+++.|++...++.|+..+.|..|++ ++++|.|+.+
T Consensus 491 -q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 491 -QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASP 530 (975)
T ss_pred -CcceeeecccCccchhhHHHHhcCcCCCCCcccccccccC
Confidence 3499999999999999999999999975 6788888764
No 112
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.97 E-value=5.6e-05 Score=49.18 Aligned_cols=103 Identities=25% Similarity=0.358 Sum_probs=70.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC----CCCCC---------------CCCCCCCcEEEEcCCCccCCHHHHH
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK----PKPKL---------------PLYAETDFKLFVGNLSWSVTTESLT 61 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~----~~~~~---------------~~~~~~~~~l~i~~lp~~~~~~~l~ 61 (125)
|.++++|..|+..++|..+.|++|.|.+... ..... .........+++.+++..++...+.
T Consensus 164 f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (306)
T COG0724 164 FESEESAEKAIEELNGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELA 243 (306)
T ss_pred ecCHHHHHHHHHHcCCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHH
Confidence 7889999999999999999999999999532 11111 1122345688999999999999999
Q ss_pred HHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHH
Q 033181 62 QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103 (125)
Q Consensus 62 ~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 103 (125)
..|..+|.+....+.............++.+.....+.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 244 DLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred HhccccccceeeeccCCCCCcccccccccchhHHHhhhhhhc
Confidence 999999998666655443333333333434333333333333
No 113
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.90 E-value=4.9e-05 Score=37.83 Aligned_cols=52 Identities=19% Similarity=0.342 Sum_probs=40.5
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHH
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETAL 102 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 102 (125)
+.|-|.|.+++..+ .+..+|..||+|....+.. ...+.++.|.++.+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC------CCcEEEEEECCHHHHHhhC
Confidence 35678888877664 4566888999999987762 2347999999999999885
No 114
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.89 E-value=0.00026 Score=48.47 Aligned_cols=108 Identities=16% Similarity=0.224 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC----------CCCC-CCCCCcEEEEcCCCccCCHHHHHHHhccC--
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP----------KLPL-YAETDFKLFVGNLSWSVTTESLTQAFQEY-- 67 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~----------~~~~-~~~~~~~l~i~~lp~~~~~~~l~~~f~~~-- 67 (125)
|.++|.-+.|++ -+..-++++.|.+..+...+- .... ...+--.|.+++||.+.++.++..+|.+-
T Consensus 109 f~d~e~Rdlalk-Rhkhh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cp 187 (508)
T KOG1365|consen 109 FVDPEGRDLALK-RHKHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCP 187 (508)
T ss_pred ecCchhhhhhhH-hhhhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCc
Confidence 456666667777 334556777777765543221 0111 11223467778999999999999999632
Q ss_pred --CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec
Q 033181 68 --GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 68 --g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 111 (125)
|....+.++. ..+|++.|-||+.|..+++|+.|+.+ |...|+
T Consensus 188 v~~g~egvLFV~-rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iG 231 (508)
T KOG1365|consen 188 VTGGTEGVLFVT-RPDGRPTGDAFVLFACEEDAQFALRK-HRQNIG 231 (508)
T ss_pred ccCCccceEEEE-CCCCCcccceEEEecCHHHHHHHHHH-HHHHHh
Confidence 2333443333 35788899999999999999999984 444444
No 115
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.86 E-value=0.00028 Score=42.20 Aligned_cols=55 Identities=31% Similarity=0.546 Sum_probs=43.9
Q ss_pred HHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 59 ~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
.|.+.|..||.+.-+++.-+ .-+|+|.+.+.|-+|+. ++|..++|+.|+|++..|
T Consensus 52 ~ll~~~~~~GevvLvRfv~~--------~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD--------TMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT--------CEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE---
T ss_pred HHHHHHHhCCceEEEEEeCC--------eEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCc
Confidence 67778889998876666533 57899999999999999 899999999999998765
No 116
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=0.00019 Score=50.60 Aligned_cols=66 Identities=21% Similarity=0.468 Sum_probs=49.3
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeec---CCCCCcee---EEEEEecCHHHHHHHHHHhC
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD---GESGRSRG---YGFVCYSTKAEMETALESLN 106 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~---~~~~~~~g---~~fv~f~~~~~a~~a~~~l~ 106 (125)
...++.||+++||++++++.|...|..||.+.. ..+.. ...-.++| |+|+.|+++.+.+..+..+.
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~V-dWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~ 327 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVKV-DWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS 327 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceEe-ecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh
Confidence 345688999999999999999999999997552 23311 11123445 99999999998888777554
No 117
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.77 E-value=0.00031 Score=39.57 Aligned_cols=77 Identities=14% Similarity=0.214 Sum_probs=49.4
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecC-------CCCCceeEEEEEecCHHHHHHHHHHhCCceecCe-E
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG-------ESGRSRGYGFVCYSTKAEMETALESLNGVELEGR-A 114 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~ 114 (125)
++-|.|=|.|+.. ...+.+.|++||.|.+..-.... .......+-.|.|.++.+|.+||. -||..++|. -
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 3456777888884 46688899999998876400000 001123489999999999999999 599999775 4
Q ss_pred EEEEEcc
Q 033181 115 MRVSLAQ 121 (125)
Q Consensus 115 i~v~~~~ 121 (125)
+-|.+.+
T Consensus 84 vGV~~~~ 90 (100)
T PF05172_consen 84 VGVKPCD 90 (100)
T ss_dssp EEEEE-H
T ss_pred EEEEEcH
Confidence 5566653
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.74 E-value=9.3e-07 Score=64.95 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=73.2
Q ss_pred cCCccccCeEEEEeccCCCCCCCCCCCCC-----CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEE
Q 033181 14 LDGREYLGRILRVNFSDKPKPKLPLYAET-----DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG 88 (125)
Q Consensus 14 ~~g~~~~~~~i~v~~~~~~~~~~~~~~~~-----~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~ 88 (125)
..|..+.++.+.+..+.+.+........+ ..++|+++|+..+...+|...|.++|.+..+++..+...+..+|.|
T Consensus 633 pa~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~ 712 (881)
T KOG0128|consen 633 PAGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKA 712 (881)
T ss_pred ccccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccce
Confidence 44555556666666555444332222222 2578999999999999999999999988887776566788999999
Q ss_pred EEEecCHHHHHHHHHHhCCceecC
Q 033181 89 FVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 89 fv~f~~~~~a~~a~~~l~~~~~~g 112 (125)
|+.|...+.+.+++....+..++.
T Consensus 713 Y~~F~~~~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 713 YVEFLKPEHAGAAVAFRDSCFFGK 736 (881)
T ss_pred eeEeecCCchhhhhhhhhhhhhhh
Confidence 999999999999998766655543
No 119
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.73 E-value=9.7e-05 Score=53.96 Aligned_cols=118 Identities=13% Similarity=0.060 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC----------------------------------CCCCCCCCCCcEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK----------------------------------PKLPLYAETDFKL 46 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~----------------------------------~~~~~~~~~~~~l 46 (125)
|...+++++|++ -|...+.++.+.+....... +..+.+..-+..|
T Consensus 359 f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~l 437 (944)
T KOG4307|consen 359 FTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGAL 437 (944)
T ss_pred ecCcchHHHHHh-cCchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceE
Confidence 556788999988 45566777777775331100 0001112234689
Q ss_pred EEcCCCccCCHHHHHHHhccCCceeE-EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 47 FVGNLSWSVTTESLTQAFQEYGNVVG-ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 47 ~i~~lp~~~~~~~l~~~f~~~g~~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
||..||..+.+.++.++|.....|+. +.+.+. .++..++.|||.|..+..+..|...-+.+.++.+.|+|.-.
T Consensus 438 yv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~-P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 438 YVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL-PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred EeccCCccccccchhhhhhhhhhhhheeEeccC-CcccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 99999999999999999987766666 555444 56778899999999988888887766677788888888654
No 120
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.67 E-value=0.00028 Score=46.72 Aligned_cols=64 Identities=17% Similarity=0.217 Sum_probs=51.6
Q ss_pred HHHHHHhccCCceeEEEEeecCCCCCce-eEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 58 ESLTQAFQEYGNVVGARVLYDGESGRSR-GYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 58 ~~l~~~f~~~g~~~~~~~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
+++...+.+||.+..+.+.......... .--||+|+..++|.+|+--|||..++|+.++.+|-.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 4677889999999998776653332222 346999999999999999999999999999998854
No 121
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.67 E-value=5.2e-05 Score=51.20 Aligned_cols=71 Identities=25% Similarity=0.541 Sum_probs=60.6
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCC--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeE
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g--~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 114 (125)
..+||+||-|++++++|.+.+...| ++..+++..+..+|.++||+++...+.......+..|-...|.|..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~ 153 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS 153 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCC
Confidence 5799999999999999999988776 4556666777788999999999999999999999988888886653
No 122
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=97.67 E-value=0.00011 Score=44.32 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|++.++|++|++.||+..+.|++|+|+++...+
T Consensus 83 F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 83 FNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115 (144)
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCC
Confidence 789999999999999999999999999986543
No 123
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.61 E-value=8.2e-05 Score=53.34 Aligned_cols=77 Identities=21% Similarity=0.232 Sum_probs=61.4
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhcc-CCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---cCeE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL---EGRA 114 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~-~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~g~~ 114 (125)
....+..|||.||-..++.-.|+.++.. .|.|....+-. .+..|||.|.+.+.|.....+|||..+ +.+.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk------IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~ 513 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK------IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKH 513 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHH------hhcceeEecccHHHHHHHHHHHhccccCCCCCce
Confidence 3456789999999999999999999984 55565553322 245799999999999999999999776 5677
Q ss_pred EEEEEcc
Q 033181 115 MRVSLAQ 121 (125)
Q Consensus 115 i~v~~~~ 121 (125)
|.+-|..
T Consensus 514 L~adf~~ 520 (718)
T KOG2416|consen 514 LIADFVR 520 (718)
T ss_pred eEeeecc
Confidence 8888765
No 124
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.55 E-value=2.6e-05 Score=57.70 Aligned_cols=78 Identities=19% Similarity=0.278 Sum_probs=65.2
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
...++|+|.|+..+.+.++.++..+|.+....++.. ..|+++|.+++.|.+..++..++.......+.-..+.+..+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsn 813 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSN 813 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhhhhhcCccccccC
Confidence 357899999999999999999999999999887776 578999999999999999999988777766655555555533
No 125
>smart00361 RRM_1 RNA recognition motif.
Probab=97.55 E-value=0.00011 Score=38.62 Aligned_cols=26 Identities=31% Similarity=0.566 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRV 26 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v 26 (125)
|++.++|.+|+..|||..+.|+.|++
T Consensus 44 f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 44 FERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 78999999999999999999999875
No 126
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.54 E-value=0.00099 Score=36.04 Aligned_cols=58 Identities=16% Similarity=0.310 Sum_probs=42.6
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 107 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 107 (125)
..++..|+. .|..+-..||.++|++||.|.--.+ -+ .-|||....++.+..++..+..
T Consensus 7 ~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 7 SRDHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp SGCCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred CcceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 355677776 9999999999999999998764333 22 2599999999999999887764
No 127
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.48 E-value=0.00068 Score=47.94 Aligned_cols=65 Identities=23% Similarity=0.331 Sum_probs=58.4
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhc-cCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHH
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~-~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 103 (125)
..++..+|||++||..++.++|-.++. -||.|..+-+-.+..-+.++|-|-|.|.+-.+.-+||.
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 456778999999999999999999998 79999999988887778899999999999988888877
No 128
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.43 E-value=7.2e-05 Score=48.37 Aligned_cols=63 Identities=24% Similarity=0.390 Sum_probs=48.6
Q ss_pred HHHHHHhc-cCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 58 ESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 58 ~~l~~~f~-~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
+++...+. +||.+..+.+-.+ ..-...|=++|.|...++|++|+..|||..++|++|.+.++-
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~N-l~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDN-LGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcc-cchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 34555555 8999888754322 222345668999999999999999999999999999998764
No 129
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.40 E-value=0.00048 Score=49.03 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=54.8
Q ss_pred cEEEEcCCCccCCHHHHHHHhc-cCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---c-CeEEEEE
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQ-EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL---E-GRAMRVS 118 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~-~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~-g~~i~v~ 118 (125)
+++.|+|+|...+...|..... ..|...++.++.+-.+..+.|||||.|.+++++....+++||+.+ . .+...+.
T Consensus 389 tt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~it 468 (549)
T KOG4660|consen 389 TTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASIT 468 (549)
T ss_pred hhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeee
Confidence 3455555555544444433322 356777888888877788899999999999999999999999765 3 3445556
Q ss_pred Ecc
Q 033181 119 LAQ 121 (125)
Q Consensus 119 ~~~ 121 (125)
||+
T Consensus 469 YAr 471 (549)
T KOG4660|consen 469 YAR 471 (549)
T ss_pred hhh
Confidence 654
No 130
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=97.39 E-value=0.00016 Score=44.35 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|+++.||+.|+..|||+.|+|..|+|+.+.....
T Consensus 54 Fed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~~r 87 (195)
T KOG0107|consen 54 FEDPRDAEDAVRYLDGKDICGSRIRVELSTGRPR 87 (195)
T ss_pred ccCcccHHHHHhhcCCccccCceEEEEeecCCcc
Confidence 8999999999999999999999999999876554
No 131
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.32 E-value=7e-06 Score=56.51 Aligned_cols=107 Identities=26% Similarity=0.352 Sum_probs=83.7
Q ss_pred CHHHHHHHHHhcCC-ccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCC
Q 033181 3 TVEDCNAVIENLDG-REYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 81 (125)
Q Consensus 3 ~~~~a~~A~~~~~g-~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~ 81 (125)
+..-|.+|++.++| .++.|+++.+..+-+.+++ +..+-|.|+|+...++.+..++.+||.+..+..... .+
T Consensus 46 dq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqr-------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt-~~ 117 (584)
T KOG2193|consen 46 DQQWANKAIETLSGKVELQGKRQEVEHSVPKKQR-------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNT-DS 117 (584)
T ss_pred chhhhhhhHHhhchhhhhcCceeeccchhhHHHH-------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhcc-ch
Confidence 45568899999999 5678999999887665544 345889999999999999999999999888754322 11
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 82 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 82 ~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
-.-..-++|...+.++.++..++|..+.+..+++.|
T Consensus 118 --etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Y 153 (584)
T KOG2193|consen 118 --ETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGY 153 (584)
T ss_pred --HHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhccc
Confidence 111234577889999999999999999988888876
No 132
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.23 E-value=0.00052 Score=43.75 Aligned_cols=36 Identities=36% Similarity=0.573 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~ 36 (125)
|+-.|||..|+..||+.++.|+.|+|+++.+.+...
T Consensus 59 fe~aEDAaaAiDNMnesEL~GrtirVN~AkP~kike 94 (298)
T KOG0111|consen 59 FEEAEDAAAAIDNMNESELFGRTIRVNLAKPEKIKE 94 (298)
T ss_pred eeccchhHHHhhcCchhhhcceeEEEeecCCccccC
Confidence 567789999999999999999999999998776543
No 133
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=97.20 E-value=0.00038 Score=36.05 Aligned_cols=25 Identities=32% Similarity=0.638 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILR 25 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~ 25 (125)
|++.++|.+|++.|+|..+.|+.|+
T Consensus 46 F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 46 FESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred EcCHHHHHHHHHHcCCCEECccCcC
Confidence 7899999999999999999999875
No 134
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=97.12 E-value=0.0029 Score=45.47 Aligned_cols=94 Identities=9% Similarity=0.157 Sum_probs=66.9
Q ss_pred HHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhcc--CCceeEEEEeecCCCCCc
Q 033181 7 CNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQE--YGNVVGARVLYDGESGRS 84 (125)
Q Consensus 7 a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~--~g~~~~~~~~~~~~~~~~ 84 (125)
...++++..+..+.++-.+|.... .-|.|.|+-||..+..++++.+|.. +..+..|.+..+.
T Consensus 150 I~Evlresp~VqvDekgekVrp~~-----------kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----- 213 (684)
T KOG2591|consen 150 IVEVLRESPNVQVDEKGEKVRPNH-----------KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----- 213 (684)
T ss_pred HHHHHhcCCCceeccCccccccCc-----------ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-----
Confidence 344555555666655555554332 3477888999999999999999975 5667777665542
Q ss_pred eeEEEEEecCHHHHHHHHHHhCC--ceecCeEEEEE
Q 033181 85 RGYGFVCYSTKAEMETALESLNG--VELEGRAMRVS 118 (125)
Q Consensus 85 ~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~i~v~ 118 (125)
-=||+|++..+|+.|.+.|.. ..|.|+.|..+
T Consensus 214 --nWyITfesd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 214 --NWYITFESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred --ceEEEeecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 148999999999999998875 45777766543
No 135
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.06 E-value=0.0079 Score=30.82 Aligned_cols=54 Identities=17% Similarity=0.217 Sum_probs=41.8
Q ss_pred cEEEEcCCCccCCHHHHHHHhccC---CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEY---GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~---g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 105 (125)
..|+|.|+.. ++.++++.+|..| ..+.++..+-+. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 4699999865 6778899999988 235566666552 4889999999999998764
No 136
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.00 E-value=0.0019 Score=44.45 Aligned_cols=75 Identities=19% Similarity=0.189 Sum_probs=59.5
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCC---CCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES---GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..|.|.||.+.++.+.++.+|.-.|.|..+.+...... ......|||-|.+...+..|.. |.++.+-++.|.|-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 37899999999999999999999999999877543111 2234679999999999988876 788887777776654
No 137
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.99 E-value=0.00088 Score=36.32 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|.+++.|++|.+.|+|..+.|.+|.|.|....
T Consensus 46 F~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 46 FPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp ESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred eCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 78899999999999999999999999988533
No 138
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.98 E-value=0.00031 Score=47.15 Aligned_cols=79 Identities=22% Similarity=0.405 Sum_probs=60.8
Q ss_pred cEEEEcCCCccCCHHHHH---HHhccCCceeEEEEeecC----CCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 44 FKLFVGNLSWSVTTESLT---QAFQEYGNVVGARVLYDG----ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~---~~f~~~g~~~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
..+|+-+|+....++.+. ..|.+||.+..+...... ..+... -++|+|...++|..|+...+|..+.|+.++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC-cccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 467888999887766553 347888999988777653 122222 379999999999999999999999999888
Q ss_pred EEEccCC
Q 033181 117 VSLAQGR 123 (125)
Q Consensus 117 v~~~~~~ 123 (125)
+++...+
T Consensus 157 a~~gttk 163 (327)
T KOG2068|consen 157 ASLGTTK 163 (327)
T ss_pred HhhCCCc
Confidence 8877654
No 139
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=96.85 E-value=0.0018 Score=43.58 Aligned_cols=34 Identities=24% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|++++||++|-.+|+|..|.||+|.|+.++..-.
T Consensus 143 men~~dadRARa~LHgt~VEGRkIEVn~ATarV~ 176 (376)
T KOG0125|consen 143 MENPADADRARAELHGTVVEGRKIEVNNATARVH 176 (376)
T ss_pred ecChhhHHHHHHHhhcceeeceEEEEeccchhhc
Confidence 6899999999999999999999999998865433
No 140
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.81 E-value=0.0036 Score=38.99 Aligned_cols=69 Identities=9% Similarity=0.116 Sum_probs=45.7
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhcc-CCce---eEEEEeec--CCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQE-YGNV---VGARVLYD--GESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~-~g~~---~~~~~~~~--~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
....|-|+.||+.++++++...+.+ ++.- .++.-... ........-|||.|.+.+++..-...++|+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 3457999999999999999998877 5544 23321122 11222346799999999999999999999876
No 141
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.62 E-value=0.0097 Score=37.35 Aligned_cols=60 Identities=22% Similarity=0.274 Sum_probs=43.9
Q ss_pred HHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC--CceecCeEEEEEEccC
Q 033181 57 TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN--GVELEGRAMRVSLAQG 122 (125)
Q Consensus 57 ~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~~~ 122 (125)
...|+++|..++.+..+..... -+-..|.|.+.+.|..+...|+ +..+.|..+++.|+.+
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~s------FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKS------FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETT------TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred HHHHHHHHHhcCCceEEEEcCC------CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3678999999998877655533 2358999999999999999999 8999999999999854
No 142
>smart00362 RRM_2 RNA recognition motif.
Probab=96.57 E-value=0.0036 Score=31.97 Aligned_cols=27 Identities=41% Similarity=0.608 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEe
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVN 27 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~ 27 (125)
|.++++|.+|+..++|..+.|+++.|+
T Consensus 46 f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 46 FESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred eCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 688999999999999999999988763
No 143
>smart00360 RRM RNA recognition motif.
Probab=96.41 E-value=0.0051 Score=31.23 Aligned_cols=27 Identities=37% Similarity=0.637 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEe
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVN 27 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~ 27 (125)
|.+.++|.+|+..+++..+.|+.+.|+
T Consensus 45 f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 45 FESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred eCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 678999999999999999999988763
No 144
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.36 E-value=0.08 Score=30.46 Aligned_cols=68 Identities=15% Similarity=0.173 Sum_probs=47.2
Q ss_pred CCcEEEEcCCCccCC-HHHHHHHhccCC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec
Q 033181 42 TDFKLFVGNLSWSVT-TESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~-~~~l~~~f~~~g-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 111 (125)
.++.+.+-..|+.++ .++|..+...+- .+..+++.++. ..++=.+.+.|.+.+.|..-...+||+.++
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 334555555565554 455655555553 56677777662 235567899999999999999999998774
No 145
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=96.32 E-value=0.007 Score=31.02 Aligned_cols=28 Identities=43% Similarity=0.700 Sum_probs=25.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEec
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNF 28 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~ 28 (125)
|.++++|..|+..+++..+.|+.+.|.+
T Consensus 47 f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 47 FEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 6789999999999999999999998764
No 146
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=96.27 E-value=0.0049 Score=31.98 Aligned_cols=25 Identities=44% Similarity=0.643 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILR 25 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~ 25 (125)
|.++++|.+|++.++|..+.|++|+
T Consensus 46 f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 46 FSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred eCCHHHHHHHHHHCCCcEECCEEcC
Confidence 6899999999999999999999874
No 147
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=96.18 E-value=0.0034 Score=37.14 Aligned_cols=31 Identities=29% Similarity=0.518 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|++.++|++|+..+||..+.|..|.|.|+..
T Consensus 121 Yet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 121 YETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred hHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 6788999999999999999999999999753
No 148
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.16 E-value=0.037 Score=38.83 Aligned_cols=67 Identities=22% Similarity=0.269 Sum_probs=53.6
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeec---CC--CCCc--------eeEEEEEecCHHHHHHHHHHhCC
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD---GE--SGRS--------RGYGFVCYSTKAEMETALESLNG 107 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~---~~--~~~~--------~g~~fv~f~~~~~a~~a~~~l~~ 107 (125)
.++.+|-+.|||.+-.-+.|.++|+.+|.|..+.+-.. .. .+-+ +-+|+|+|...+.|.+|...++.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47788999999999888999999999999999887543 11 1211 34689999999999999997754
No 149
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.10 E-value=0.0041 Score=43.81 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=59.0
Q ss_pred CcEEEEcCCCccC-CHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 43 DFKLFVGNLSWSV-TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~~~-~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+.+-+...|+.+ +.++|..+|.+||.|..+.+.... -.|.|+|.+...|.+|.. .++..|+|+.|++.|-.
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~------~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS------LHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch------hhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 3456666666655 457999999999999999876552 258999999999988877 69999999999999966
Q ss_pred C
Q 033181 122 G 122 (125)
Q Consensus 122 ~ 122 (125)
+
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 5
No 150
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.09 E-value=0.067 Score=37.81 Aligned_cols=69 Identities=17% Similarity=0.284 Sum_probs=57.2
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccC-CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEY-GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~-g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 111 (125)
.+++.|.|-.+|..++-.||..|+..+ ..|..+.++++. -.++=..+|.|.+..+|..-...+||..++
T Consensus 72 ~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~--~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 72 SSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG--MPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC--CCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 347899999999999999999999876 468888888852 223446799999999999999999998765
No 151
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=95.92 E-value=0.0096 Score=42.15 Aligned_cols=33 Identities=39% Similarity=0.674 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|++.|||.++.|++|+|.|+...+
T Consensus 67 ~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~ 99 (435)
T KOG0108|consen 67 FTDEETAERAIRNLNGAEFNGRKLRVNYASNRK 99 (435)
T ss_pred cCchhhHHHHHHhcCCcccCCceEEeecccccc
Confidence 678899999999999999999999999985433
No 152
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.89 E-value=0.011 Score=41.30 Aligned_cols=73 Identities=32% Similarity=0.458 Sum_probs=55.5
Q ss_pred EEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc-eecCeEEEEEEccCC
Q 033181 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV-ELEGRAMRVSLAQGR 123 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~-~~~g~~i~v~~~~~~ 123 (125)
.+|++||.+..+..++...|..---...-.+.. ..||+|+.+.+..-|..++..++|. .+.|.++.+..+-++
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 589999999999999999997542111111111 2479999999999999999999996 488998888776554
No 153
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=95.85 E-value=0.054 Score=32.51 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=51.5
Q ss_pred CCCcEEEEcCCCccC----CHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 41 ETDFKLFVGNLSWSV----TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~----~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
++-.+|-|+=|...+ +-..+...++.||.|..+.+-. +..|.|.|.+..+|=.|+.+++. ...|..+.
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG-------rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~q 155 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG-------RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQ 155 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC-------CceEEEEehhhHHHHHHHHhhcC-CCCCceEE
Confidence 344566676555544 3345666688999999875431 33699999999999999998886 55667788
Q ss_pred EEEcc
Q 033181 117 VSLAQ 121 (125)
Q Consensus 117 v~~~~ 121 (125)
|+|-.
T Consensus 156 CsWqq 160 (166)
T PF15023_consen 156 CSWQQ 160 (166)
T ss_pred eeccc
Confidence 87754
No 154
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=95.81 E-value=0.0072 Score=38.36 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|-...||+.|+.+|+|..+.|+.|.|+++.-.
T Consensus 62 f~~k~daedA~damDG~~ldgRelrVq~aryg 93 (256)
T KOG4207|consen 62 FHDKRDAEDALDAMDGAVLDGRELRVQMARYG 93 (256)
T ss_pred eeecchHHHHHHhhcceeeccceeeehhhhcC
Confidence 45678999999999999999999999987543
No 155
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=95.29 E-value=0.18 Score=26.20 Aligned_cols=55 Identities=18% Similarity=0.265 Sum_probs=42.3
Q ss_pred cCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 54 SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 54 ~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
.++-++++..|..|+- ..+.. + . . .=||.|.+..+|+++....+|..+.+.++.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d-~----t-GfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--D-R----T-GFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--c-C----C-EEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4566899999999964 33322 2 1 2 2599999999999999999999998887765
No 156
>PLN03120 nucleic acid binding protein; Provisional
Probab=95.28 E-value=0.044 Score=36.18 Aligned_cols=32 Identities=6% Similarity=0.202 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.++++|..|+. |||..+.|++|.|.++...+
T Consensus 50 F~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 50 FKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred eCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 789999999997 99999999999999986443
No 157
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.95 E-value=0.025 Score=32.11 Aligned_cols=33 Identities=18% Similarity=0.235 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|++..+|.+|+..|+|..+.++.+.|-+..+.+
T Consensus 64 Yedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~ 96 (124)
T KOG0114|consen 64 YEDIFDAKKACDHLSGYNVDNRYLVVLYYQPED 96 (124)
T ss_pred ehHhhhHHHHHHHhcccccCCceEEEEecCHHH
Confidence 678999999999999999999999999886543
No 158
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=94.73 E-value=0.025 Score=33.31 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEecc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~ 29 (125)
|-+.++|..|++.++|..+.+++|++.|-
T Consensus 85 yy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 85 YYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred EecchhHHHHHHHhccCcccccceeeecc
Confidence 45789999999999999999999999875
No 159
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=94.51 E-value=0.0077 Score=45.59 Aligned_cols=78 Identities=23% Similarity=0.292 Sum_probs=63.2
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.+|+++|++..+++.+++..|..+|.+..+.+-.... +.-.-++|+.|.+...+..++..+.+..|+...+++.+.
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~-~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI-KTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC-CcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 356899999999999999999999999999987755522 222348999999999999999999998886655665554
No 160
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.43 E-value=0.13 Score=34.60 Aligned_cols=61 Identities=20% Similarity=0.277 Sum_probs=44.7
Q ss_pred EEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeE
Q 033181 46 LFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 46 l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 114 (125)
|-|-+.|+.-. ..|..+|.+||.|...... . ...|-+|.|.++-+|++||. .+|..|+|..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~---ngNwMhirYssr~~A~KALs-kng~ii~g~v 260 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---S---NGNWMHIRYSSRTHAQKALS-KNGTIIDGDV 260 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC---C---CCceEEEEecchhHHHHhhh-hcCeeeccce
Confidence 33445555432 4678889999998876543 1 23488999999999999999 5888887653
No 161
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=94.30 E-value=0.39 Score=25.38 Aligned_cols=59 Identities=24% Similarity=0.360 Sum_probs=32.8
Q ss_pred ccCCHHHHHHHhccCC-----ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 53 WSVTTESLTQAFQEYG-----NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 53 ~~~~~~~l~~~f~~~g-----~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
..++..+|..++..-+ .|-.+.+.. .++|++... +.+..++..|++..+.|++++|+.|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~--------~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFD--------NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-S--------S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEee--------eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 3566677777776543 344455532 378998864 5889999999999999999999864
No 162
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.65 E-value=0.074 Score=39.25 Aligned_cols=71 Identities=18% Similarity=0.219 Sum_probs=58.0
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
+.++..++||+|+-.....+-++.++..+|.+..+... .|||..|.......+++..++-..++|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 34566789999999999999999999999987754332 289999999999999999999888887765543
No 163
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=93.58 E-value=0.016 Score=37.18 Aligned_cols=93 Identities=23% Similarity=0.325 Sum_probs=66.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.+.-++..|++-+||..+.+..+.+.+-...... -|....+.+.+...++.-|.+..+.+....
T Consensus 56 f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~sha--------------pld~r~~~ei~~~v~s~a~p~~~~R~~~~~- 120 (267)
T KOG4454|consen 56 FPNENSVQLAGQLENGDDLEEDEEQRTLRCGNSHA--------------PLDERVTEEILYEVFSQAGPIEGVRIPTDN- 120 (267)
T ss_pred cccccchhhhhhhcccchhccchhhcccccCCCcc--------------hhhhhcchhhheeeecccCCCCCccccccc-
Confidence 56677888999999999999998888765433211 123355667777778888888887777764
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCc
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 108 (125)
.|.++.++++.+--..+...++....+.
T Consensus 121 d~rnrn~~~~~~qr~~~~P~~~~~y~~l 148 (267)
T KOG4454|consen 121 DGRNRNFGFVTYQRLCAVPFALDLYQGL 148 (267)
T ss_pred cCCccCccchhhhhhhcCcHHhhhhccc
Confidence 3667778888887766667777666654
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.44 E-value=0.1 Score=31.45 Aligned_cols=29 Identities=24% Similarity=0.423 Sum_probs=24.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|.+.++|.+|+. ++|.+++|+.|+|...+
T Consensus 77 F~dg~sALaals-~dg~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 77 FRDGQSALAALS-LDGIQVNGRTLKIRLKT 105 (146)
T ss_dssp ESSCHHHHHHHH-GCCSEETTEEEEEEE--
T ss_pred ECccHHHHHHHc-cCCcEECCEEEEEEeCC
Confidence 677889999999 99999999999998654
No 165
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=93.08 E-value=0.099 Score=34.29 Aligned_cols=30 Identities=33% Similarity=0.559 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|...++|++|+..|||.-+.|++|..+++.
T Consensus 117 f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 117 FRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred cccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 678899999999999999999999998774
No 166
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=93.03 E-value=0.093 Score=33.36 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|++++.|..|-++||++.++|+.+.+.+-.+.
T Consensus 99 FEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 99 FESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred eccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 89999999999999999999999999877544
No 167
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=92.87 E-value=0.081 Score=40.27 Aligned_cols=69 Identities=32% Similarity=0.442 Sum_probs=55.1
Q ss_pred EcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--cCeEEEEEEccC
Q 033181 48 VGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL--EGRAMRVSLAQG 122 (125)
Q Consensus 48 i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~~~~ 122 (125)
+.|.+-..+...|..+|..||.+......++- ..+.|.|.+.+.|-.|+.+++|..+ -|-+.+|.+|+.
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 33444455667899999999999988776662 3799999999999999999999764 577789988874
No 168
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=92.43 E-value=0.063 Score=35.27 Aligned_cols=30 Identities=13% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|.+++++.+|+++|||+.++.++|++.-+.
T Consensus 239 f~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 239 FRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 789999999999999999999999987553
No 169
>PLN03213 repressor of silencing 3; Provisional
Probab=92.22 E-value=0.14 Score=36.96 Aligned_cols=27 Identities=15% Similarity=0.302 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 5 EDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 5 ~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
+++.+||..|||..|.|+.|+|+.+++
T Consensus 61 aEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 61 NSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred HHHHHHHHHhcCCeecCceeEEeeccH
Confidence 679999999999999999999997754
No 170
>PLN03121 nucleic acid binding protein; Provisional
Probab=91.96 E-value=0.41 Score=31.37 Aligned_cols=30 Identities=7% Similarity=0.093 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|.++++|+.|+. |||..+.+++|.|.....
T Consensus 51 F~d~~aaetAll-LnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 51 FKDAYALETAVL-LSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ECCHHHHHHHHh-cCCCeeCCceEEEEeCcc
Confidence 789999999997 999999999999987653
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=91.82 E-value=0.18 Score=33.89 Aligned_cols=30 Identities=27% Similarity=0.523 Sum_probs=27.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|+.+++|-+|+-.|||+.|+|+.+...|-+
T Consensus 336 F~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 336 FERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred eccHHHHHHHHHhcCCceecceeeeheecc
Confidence 788999999999999999999998877664
No 172
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=90.32 E-value=0.28 Score=37.17 Aligned_cols=63 Identities=16% Similarity=0.258 Sum_probs=41.4
Q ss_pred CHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhc
Q 033181 3 TVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQ 65 (125)
Q Consensus 3 ~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~ 65 (125)
..++|.+|++.|+++.+.++.|+|.|+-..-.......--+..+=|.-||++--..++..++.
T Consensus 466 ~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 466 RRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred ehhHHHHHHHHHhcccccceeeEEeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 467999999999999999999999999655433311111222223344577644455776664
No 173
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=89.44 E-value=0.22 Score=33.54 Aligned_cols=76 Identities=26% Similarity=0.207 Sum_probs=55.7
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
..+.+|++++.+.+.+.+...++...|......+.........++++++.|...+.+..++.......+.+..+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 3567888999888888877788888886665555444456778899999999999999999854444555544433
No 174
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=89.42 E-value=2.3 Score=23.43 Aligned_cols=64 Identities=11% Similarity=0.112 Sum_probs=39.1
Q ss_pred CCCHHHHHHHHHhcCCcc--ccCeEEEEeccCCCCCCC----CCCCCCCcEEEEcCCCccCCHHHHHHHhc
Q 033181 1 MSTVEDCNAVIENLDGRE--YLGRILRVNFSDKPKPKL----PLYAETDFKLFVGNLSWSVTTESLTQAFQ 65 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~--~~~~~i~v~~~~~~~~~~----~~~~~~~~~l~i~~lp~~~~~~~l~~~f~ 65 (125)
|+++..|++-++ +..+. +.+..+.|..+....... -....+.++|-+.|+|..++++.|++.+.
T Consensus 5 F~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 5 FEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred eCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 677888888877 43333 345555554331111110 01123557899999999999999986553
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=88.50 E-value=0.4 Score=27.09 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=21.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeE-EEEecc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRI-LRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~-i~v~~~ 29 (125)
|+++.+|.+||+ -||..+.|.- +=|.+.
T Consensus 61 Y~~~~~A~rAL~-~NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 61 YDNPLSAQRALQ-KNGTIFSGSLMVGVKPC 89 (100)
T ss_dssp ESSHHHHHHHHT-TTTEEETTCEEEEEEE-
T ss_pred CCCHHHHHHHHH-hCCeEEcCcEEEEEEEc
Confidence 689999999999 8999898753 334444
No 176
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=87.58 E-value=0.66 Score=31.99 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|.+.+||.+||.+.+|..+.|+.|+..|..
T Consensus 172 y~~kedAarcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 172 YSTKEDAARCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred ecchHHHHHHHHHhccccccCceEeeecCc
Confidence 678899999999999999999999998763
No 177
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=87.12 E-value=0.94 Score=23.54 Aligned_cols=26 Identities=8% Similarity=0.264 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRV 26 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v 26 (125)
|.+.++|+++....+|..+.+..+.+
T Consensus 40 F~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 40 FNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred ECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 67889999999999999888776654
No 178
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=86.90 E-value=0.44 Score=25.18 Aligned_cols=25 Identities=32% Similarity=0.547 Sum_probs=15.0
Q ss_pred HHHHHHHHhcCCccccCeEEEEecc
Q 033181 5 EDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 5 ~~a~~A~~~~~g~~~~~~~i~v~~~ 29 (125)
+.|..++..|++..+.|+++.++.+
T Consensus 50 ~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 50 EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T-HHHHHHHHTT--SSS----EEE-
T ss_pred HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4688999999999999999998753
No 179
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=86.76 E-value=0.68 Score=34.98 Aligned_cols=30 Identities=10% Similarity=0.271 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|-+..||++|+++|+|..+.+..+++.|+.
T Consensus 226 fmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 226 FMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred ehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 456789999999999999999999999985
No 180
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=85.37 E-value=1.6 Score=28.84 Aligned_cols=33 Identities=15% Similarity=0.427 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|...+||.+|++.++|..+.|+++++.......
T Consensus 131 ~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~~ 163 (243)
T KOG0533|consen 131 FNRRDDAERAVKKYNGVALDGRPMKIEIISSPS 163 (243)
T ss_pred ecchHhHHHHHHHhcCcccCCceeeeEEecCcc
Confidence 566789999999999999999999988765443
No 181
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=84.74 E-value=2.2 Score=28.82 Aligned_cols=46 Identities=13% Similarity=0.193 Sum_probs=35.0
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCc-eeEEEEeecCCCCCceeEEEEEecCH
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGN-VVGARVLYDGESGRSRGYGFVCYSTK 95 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~-~~~~~~~~~~~~~~~~g~~fv~f~~~ 95 (125)
+-|+++||+.++.-.+|+..+.+.+- ...+.+ .-+.|-||++|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCc
Confidence 56999999999999999999988763 333333 22467799999764
No 182
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=84.25 E-value=0.94 Score=28.41 Aligned_cols=58 Identities=14% Similarity=0.184 Sum_probs=41.4
Q ss_pred HHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCe-EEEEEEccC
Q 033181 59 SLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR-AMRVSLAQG 122 (125)
Q Consensus 59 ~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~i~v~~~~~ 122 (125)
....+|.++.......+.+. .+..-|.|.+++.|..|...+++..+.|. .+++-++.+
T Consensus 31 ~~~~lFrq~n~~~~fq~lrs------frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 31 LFENLFRQINEDATFQLLRS------FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HHHhHHhhhCcchHHHHHHh------hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 34555666554444333322 34567899999999999999999999887 888887765
No 183
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=83.91 E-value=3.6 Score=21.09 Aligned_cols=21 Identities=19% Similarity=0.176 Sum_probs=17.2
Q ss_pred HHHHHHhccCCceeEEEEeec
Q 033181 58 ESLTQAFQEYGNVVGARVLYD 78 (125)
Q Consensus 58 ~~l~~~f~~~g~~~~~~~~~~ 78 (125)
.+|+++|+.+|.|.-+.+...
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHhcCcEEEEEEccc
Confidence 579999999999887766544
No 184
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.29 E-value=1.5 Score=27.63 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHhcC--CccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLD--GREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~--g~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|...++ +..+.|..+++.|+..
T Consensus 38 f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 38 FESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred eCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 788999999999999 9999999999998843
No 185
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=80.21 E-value=1.5 Score=30.49 Aligned_cols=31 Identities=23% Similarity=0.358 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|++.+++++|+=.|++..|.++.|.|.|+..
T Consensus 288 Fen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 288 FENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred ecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 7899999999999999999999999998853
No 186
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=76.90 E-value=8.7 Score=20.03 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=40.2
Q ss_pred HHHHHHhccCC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 58 ESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 58 ~~l~~~f~~~g-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+++.+.|...| .+..+.-+....++.+...-||+.....+... .++=..+++..|+|...+.++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~---i~~Ik~l~~~~V~vE~~~k~~ 66 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKE---IYKIKTLCGQRVKVERPRKRR 66 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccc---eeehHhhCCeEEEEecCCCCC
Confidence 35666677666 46666555555566666778888875444222 233356788888888776654
No 187
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=70.81 E-value=0.54 Score=29.57 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEec
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNF 28 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~ 28 (125)
|++-.+.-.|+..|||..+.||.|+|.-
T Consensus 84 YEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 84 YEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred ecCccceEEEEeccCCceecceeEEeee
Confidence 3455566678999999999999999973
No 188
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.84 E-value=18 Score=25.93 Aligned_cols=55 Identities=22% Similarity=0.236 Sum_probs=43.6
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCc-eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHH
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGN-VVGARVLYDGESGRSRGYGFVCYSTKAEMETALES 104 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 104 (125)
.+.|-|.+.|...-.+||...|..|+. .-.+.++-+ ..+|..|.+...|..|+..
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 368889999999888899999998864 344555433 2699999999999999884
No 189
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=68.11 E-value=0.81 Score=27.45 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=23.5
Q ss_pred EEEcCCCcc-CCHHHHHHHhccCCceeEEEE
Q 033181 46 LFVGNLSWS-VTTESLTQAFQEYGNVVGARV 75 (125)
Q Consensus 46 l~i~~lp~~-~~~~~l~~~f~~~g~~~~~~~ 75 (125)
|.|.|||.. ++++.+..+.+..|.+..+-.
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 456799986 567788888899999887644
No 190
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=67.77 E-value=5.9 Score=29.64 Aligned_cols=30 Identities=30% Similarity=0.451 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 2 STVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 2 ~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
.+.++|.+||..|+...+.|+-|.|+.+..
T Consensus 455 Sts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 455 STSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 578899999999999999999999987753
No 191
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=67.75 E-value=6.6 Score=25.85 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|.+.+.|.+|++.-| -.|.||+..++.+.-
T Consensus 61 f~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 61 FRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred eecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 678999999999654 558899988887654
No 192
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=63.13 E-value=0.77 Score=33.66 Aligned_cols=70 Identities=13% Similarity=0.162 Sum_probs=50.5
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 111 (125)
..+.+++.++++.++-.+|...|+.+..+.++.+............++++|.-.-....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3467899999999999999999998877776655433222334456788887666667777777775543
No 193
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=63.05 E-value=21 Score=18.78 Aligned_cols=62 Identities=18% Similarity=0.187 Sum_probs=38.0
Q ss_pred HHHHHhccCC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 59 SLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 59 ~l~~~f~~~g-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++.+.|...| .+..+.-+....++.+...-+|+.....+-.. .++=..|++.++.|.-...+
T Consensus 3 ~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k~ 65 (69)
T smart00596 3 QIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHKR 65 (69)
T ss_pred HHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCccc
Confidence 5667777777 56666666665666666777887764322111 33335678888888765443
No 194
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=62.18 E-value=11 Score=26.29 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHh-cCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIEN-LDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~-~~g~~~~~~~i~v~~~~~ 31 (125)
|-+.+.|++|... +|...|.|++|+|.|+.+
T Consensus 271 ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 271 FTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred ehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 5677888887766 454667899999999987
No 195
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.44 E-value=25 Score=20.43 Aligned_cols=44 Identities=18% Similarity=0.407 Sum_probs=23.5
Q ss_pred CHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecC-HHHHHHHH
Q 033181 56 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST-KAEMETAL 102 (125)
Q Consensus 56 ~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~ 102 (125)
+.+.|.+.|+.|.... +...... ..+.|++.|.|.+ -.-...|+
T Consensus 30 ~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 30 SNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHH
T ss_pred CHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHH
Confidence 4478999999997665 3333332 2467899999984 33333343
No 196
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=60.04 E-value=9.5 Score=25.06 Aligned_cols=30 Identities=27% Similarity=0.389 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|.+.+.+..|+. |||..+.++.+.+.+...
T Consensus 150 f~~~~~~~~ay~-l~gs~i~~~~i~vt~~r~ 179 (231)
T KOG4209|consen 150 FSSYELVEEAYK-LDGSEIPGPAIEVTLKRT 179 (231)
T ss_pred cccHhhhHHHhh-cCCcccccccceeeeeee
Confidence 678889999999 999999999999987643
No 197
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=59.32 E-value=19 Score=25.44 Aligned_cols=67 Identities=16% Similarity=0.221 Sum_probs=45.9
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCc-eeEEEEeecCCC--CCceeEEEEEecCHHHHHHHHHHhCCcee
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGN-VVGARVLYDGES--GRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~-~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
..+-|..||+.++..++...+.++-. +....+.....+ ....+.+||.|...++...-...++|+.+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 45778899999999999988888643 222222211111 11235689999999998888888888765
No 198
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=56.69 E-value=17 Score=24.93 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=26.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|++..+...|++.-+|..|.|+.|.|.+-.
T Consensus 150 ye~erdm~~AYK~adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 150 YEHERDMKAAYKDADGIKIDGRRILVDVER 179 (335)
T ss_pred eccHHHHHHHHHhccCceecCcEEEEEecc
Confidence 677889999999999999999999997653
No 199
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=55.42 E-value=8.9 Score=28.63 Aligned_cols=26 Identities=15% Similarity=0.383 Sum_probs=21.0
Q ss_pred CCCHHHHHHHHHhcCCcccc-CeEEEE
Q 033181 1 MSTVEDCNAVIENLDGREYL-GRILRV 26 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~-~~~i~v 26 (125)
|++..+|..|++.+||+.+. .+...+
T Consensus 112 ~~~~~~A~~aVK~l~G~~ldknHtf~v 138 (698)
T KOG2314|consen 112 YASMRDAKKAVKSLNGKRLDKNHTFFV 138 (698)
T ss_pred ecChhhHHHHHHhcccceecccceEEe
Confidence 67899999999999999885 444444
No 200
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=55.25 E-value=1.8 Score=30.57 Aligned_cols=61 Identities=16% Similarity=0.086 Sum_probs=43.9
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 109 (125)
.++++.+|+..+...++...|..+|.+.+..+.. +....+|-+.|....+...|+. .+|..
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as----k~~s~~c~~sf~~qts~~halr-~~gre 212 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS----KSRSSSCSHSFRKQTSSKHALR-SHGRE 212 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc----cCCCcchhhhHhhhhhHHHHHH-hcchh
Confidence 4688999999998899999999999888765543 2334466688876666666666 45543
No 201
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=52.31 E-value=7.3 Score=27.15 Aligned_cols=31 Identities=19% Similarity=0.507 Sum_probs=27.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|+++..|+.|+.-++++.+.+..|+|..+..
T Consensus 123 ~~D~~~akaai~~~agkdf~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 123 YEDPPAAKAAIEWFAGKDFCGNTIKVSLAER 153 (351)
T ss_pred ecChhhhhhhhhhhccccccCCCchhhhhhh
Confidence 6788899999999999999999999877643
No 202
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=51.96 E-value=25 Score=23.98 Aligned_cols=36 Identities=11% Similarity=0.325 Sum_probs=27.5
Q ss_pred CCcEEEEcCCCcc------------CCHHHHHHHhccCCceeEEEEee
Q 033181 42 TDFKLFVGNLSWS------------VTTESLTQAFQEYGNVVGARVLY 77 (125)
Q Consensus 42 ~~~~l~i~~lp~~------------~~~~~l~~~f~~~g~~~~~~~~~ 77 (125)
...+||+.++|-. .+++.|+..|..||.|..+-++.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 3457899888863 34567999999999999887654
No 203
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=51.95 E-value=39 Score=23.22 Aligned_cols=78 Identities=13% Similarity=0.264 Sum_probs=52.1
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecC-------CCCCceeEEEEEecCHHHHHH----HHHHhCC--ce
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG-------ESGRSRGYGFVCYSTKAEMET----ALESLNG--VE 109 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~-------~~~~~~g~~fv~f~~~~~a~~----a~~~l~~--~~ 109 (125)
.+.|.+.|+..+++-..+...|..||+|+.+.+..+. ...+......+.|-+++.+-. .++.|.. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 3567788999999888888889999999999987663 112233456778877766533 2233332 34
Q ss_pred ecCeEEEEEEc
Q 033181 110 LEGRAMRVSLA 120 (125)
Q Consensus 110 ~~g~~i~v~~~ 120 (125)
+....|.+.|.
T Consensus 95 L~S~~L~lsFV 105 (309)
T PF10567_consen 95 LKSESLTLSFV 105 (309)
T ss_pred cCCcceeEEEE
Confidence 56667777664
No 204
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.21 E-value=2.6 Score=30.29 Aligned_cols=74 Identities=7% Similarity=-0.137 Sum_probs=48.1
Q ss_pred EEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++..+|...+.+++.-.|..||.|..+-+.+.-+.|.....+|++... ..++.++.-+.-..+.|..+++..
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~ 78 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAV 78 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhc
Confidence 34567788888999999999999988877666555556666677777643 344444444433444444444444
No 205
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=46.30 E-value=38 Score=21.52 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=29.8
Q ss_pred HHHHHHhccCCceeEEEEeecCCCC--CceeEEEEEecCHHHHHHHHH
Q 033181 58 ESLTQAFQEYGNVVGARVLYDGESG--RSRGYGFVCYSTKAEMETALE 103 (125)
Q Consensus 58 ~~l~~~f~~~g~~~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~ 103 (125)
++|..+.+ |.+..+..-... .+ ...|-.|++|.+.+.|.+.+.
T Consensus 124 ~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 124 DDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred HHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhh
Confidence 44555555 777777665552 23 456778999999999988665
No 206
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.19 E-value=1.4e+02 Score=22.77 Aligned_cols=80 Identities=20% Similarity=0.404 Sum_probs=55.4
Q ss_pred CCCCcEEEEcCCCcc-CCHHHHHHHhccC----CceeEEEEeecC----------CCCC---------------------
Q 033181 40 AETDFKLFVGNLSWS-VTTESLTQAFQEY----GNVVGARVLYDG----------ESGR--------------------- 83 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~-~~~~~l~~~f~~~----g~~~~~~~~~~~----------~~~~--------------------- 83 (125)
...+..|-|-|+.|. +...+|..+|+.| |.|..+.+-... ..|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 345678889999995 6778888887655 467777643220 1122
Q ss_pred ----------------ceeEEEEEecCHHHHHHHHHHhCCceecCe--EEEEEE
Q 033181 84 ----------------SRGYGFVCYSTKAEMETALESLNGVELEGR--AMRVSL 119 (125)
Q Consensus 84 ----------------~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~--~i~v~~ 119 (125)
..=||.|+|.+...|......+.|..++.. .+-++|
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 123689999999999999999999988643 444444
No 207
>PRK10905 cell division protein DamX; Validated
Probab=43.50 E-value=1.1e+02 Score=21.45 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=30.5
Q ss_pred CCHHHHHHHhccCCceeEEEEeecCCCCCceeEE--EEEecCHHHHHHHHHHhCC
Q 033181 55 VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG--FVCYSTKAEMETALESLNG 107 (125)
Q Consensus 55 ~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~--fv~f~~~~~a~~a~~~l~~ 107 (125)
.+.+.|+.+..+.|.-.+. +.....+|+. +|. +-.|.++++|+.|+..|-.
T Consensus 256 Ss~~~l~~fakKlgL~~y~-vy~TtRnGkp-WYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 256 SNYDNLNGWAKKENLKNYV-VYETTRNGQP-WYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CCHHHHHHHHHHcCCCceE-EEEeccCCce-EEEEEecCCCCHHHHHHHHHHCCH
Confidence 3456777777776532222 2222233332 343 4478899999999998753
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=42.63 E-value=57 Score=23.91 Aligned_cols=21 Identities=14% Similarity=0.469 Sum_probs=18.6
Q ss_pred CCCHHHHHHHHHhcCCccccC
Q 033181 1 MSTVEDCNAVIENLDGREYLG 21 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~ 21 (125)
|.+.++|..-+.++||+.|..
T Consensus 122 Fr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 122 FRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred eccchhHHHHHHHcCCCcCCC
Confidence 678899999999999999863
No 209
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=41.49 E-value=8.5 Score=28.66 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHhcCC--ccccCeEEE
Q 033181 1 MSTVEDCNAVIENLDG--REYLGRILR 25 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g--~~~~~~~i~ 25 (125)
|++..||+.|++.|.. ++|.|++|.
T Consensus 219 fesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 219 FESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred eecchhHHHHHHHHHHHHHhhcCcchh
Confidence 7889999999988754 445665543
No 210
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=41.15 E-value=88 Score=20.18 Aligned_cols=62 Identities=10% Similarity=0.215 Sum_probs=39.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCc-------cC-CHHHHHHHhccCCc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSW-------SV-TTESLTQAFQEYGN 69 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~-------~~-~~~~l~~~f~~~g~ 69 (125)
|.+.++|-+-++ -.|+.+....|.+.+..+.- ......|||--... .. ..+.+.++.+.+.+
T Consensus 49 ~qs~e~ai~~lE-~e~KlWreteI~I~~g~p~V------NE~TkkIYICPFTGKVF~DNt~~nPQDAIYDWvSkCPe 118 (238)
T PF10915_consen 49 FQSAEDAIRILE-EEGKLWRETEIKIQSGKPSV------NEQTKKIYICPFTGKVFGDNTHPNPQDAIYDWVSKCPE 118 (238)
T ss_pred ccCHHHHHHHHH-HhcchheeeeEEEecCCccc------ccccceEEEcCCcCccccCCCCCChHHHHHHHHhhCCc
Confidence 567788877777 57888999999998776442 22334566632211 11 23568888888753
No 211
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=40.54 E-value=31 Score=17.16 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHh
Q 033181 1 MSTVEDCNAVIEN 13 (125)
Q Consensus 1 f~~~~~a~~A~~~ 13 (125)
|.++++|..|...
T Consensus 32 f~t~eeAa~Ayd~ 44 (61)
T cd00018 32 FDTAEEAARAYDR 44 (61)
T ss_pred CCCHHHHHHHHHH
Confidence 7889999988764
No 212
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=40.01 E-value=56 Score=16.94 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEEEecCHHHHHHHHHHhCCcee
Q 033181 87 YGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 87 ~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
+.++.|.+...|.++-+.|....+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi 26 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGI 26 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCC
Confidence 578999999999888887776544
No 213
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=39.75 E-value=31 Score=22.90 Aligned_cols=32 Identities=25% Similarity=0.248 Sum_probs=26.3
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA 73 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~ 73 (125)
....+|+-|+|...+++.|.++.++.|-+...
T Consensus 39 eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 39 EKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 34569999999999999999999988855443
No 214
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=39.42 E-value=32 Score=17.37 Aligned_cols=13 Identities=15% Similarity=0.335 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHh
Q 033181 1 MSTVEDCNAVIEN 13 (125)
Q Consensus 1 f~~~~~a~~A~~~ 13 (125)
|.++++|..|...
T Consensus 31 f~t~eeAa~Ayd~ 43 (64)
T smart00380 31 FDTAEEAARAYDR 43 (64)
T ss_pred CCCHHHHHHHHHH
Confidence 7899999998764
No 215
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=38.52 E-value=15 Score=26.82 Aligned_cols=32 Identities=9% Similarity=0.207 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.+..+|..|.. ..+..+.++.|++.|.++..
T Consensus 416 F~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 416 FKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred eeccccccchhc-cccceecCceeEEEEecCCc
Confidence 566777777777 78899999999999998644
No 216
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=38.51 E-value=1.8e+02 Score=22.17 Aligned_cols=77 Identities=16% Similarity=0.160 Sum_probs=44.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeec-C
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD-G 79 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~-~ 79 (125)
|++.++|.+|+. +|..-.|..|-+.+-.|.--+ ++|..+. +...+...|--..+.++.+ +
T Consensus 404 F~see~a~~ai~--~g~I~~gdVvViRyeGPkGgP--------------GMpEml~---~t~al~g~Gl~~~valITDGR 464 (552)
T PRK00911 404 FDSEEEAMEAIL--AGKIKAGDVVVIRYEGPKGGP--------------GMREMLA---PTSAIVGAGLGDDVALITDGR 464 (552)
T ss_pred ECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCCCC--------------ChHHHhh---HHHHHHhCCCCCceEEecccc
Confidence 789999999999 566666777777776544211 2222111 2233434444345545544 4
Q ss_pred CCCCceeEEEEEecCHHH
Q 033181 80 ESGRSRGYGFVCYSTKAE 97 (125)
Q Consensus 80 ~~~~~~g~~fv~f~~~~~ 97 (125)
.+|-..|.+..+. ++|.
T Consensus 465 fSG~s~G~~igHv-sPEA 481 (552)
T PRK00911 465 FSGGTRGLCVGHV-SPEA 481 (552)
T ss_pred cCccccCCEEEEE-Chhh
Confidence 5677777666665 3444
No 217
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=37.72 E-value=61 Score=18.38 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=17.3
Q ss_pred ceeEEEEEecCHHHHHHHHHHh
Q 033181 84 SRGYGFVCYSTKAEMETALESL 105 (125)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l 105 (125)
-.-|+.++|.+.+...++...+
T Consensus 65 ~VvFsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 65 EVVFSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEEEEcCchhHHHHHHHHh
Confidence 3468899999999888887654
No 218
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=36.94 E-value=94 Score=18.55 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=28.6
Q ss_pred HHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCC
Q 033181 7 CNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLS 52 (125)
Q Consensus 7 a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp 52 (125)
...++..+.|+.+.++++.+..-....+ ...-+.|||+.-.
T Consensus 38 ~~~~L~~l~~~~~~~~~i~v~~~~~~~~-----~~~C~ilyi~~~~ 78 (145)
T PF13689_consen 38 FAEALSTLAGKQVGGRPIRVRRLSSPNE-----ISGCHILYISSSE 78 (145)
T ss_pred HHHHHHHhhhcccCCCcEEEEECCCCcc-----cccccEEEECCCC
Confidence 4567888999999999999986532221 2345678886554
No 219
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=35.26 E-value=13 Score=25.74 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=25.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|+..++|..||...+|..+.|+.++..+..
T Consensus 132 y~~~eda~rci~~v~g~~~dg~~lka~~gt 161 (327)
T KOG2068|consen 132 YEEEEDADRCIDDVDGFVDDGRALKASLGT 161 (327)
T ss_pred ccchHhhhhHHHHhhhHHhhhhhhHHhhCC
Confidence 567799999999999999999987776654
No 220
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=32.76 E-value=40 Score=15.07 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=13.5
Q ss_pred cCCHHHHHHHhccCCc
Q 033181 54 SVTTESLTQAFQEYGN 69 (125)
Q Consensus 54 ~~~~~~l~~~f~~~g~ 69 (125)
.++.++|+..+..+|.
T Consensus 3 tWs~~~L~~wL~~~gi 18 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGI 18 (38)
T ss_pred CCCHHHHHHHHHHcCC
Confidence 4678999999999875
No 221
>PHA01632 hypothetical protein
Probab=32.71 E-value=49 Score=16.54 Aligned_cols=18 Identities=17% Similarity=0.265 Sum_probs=14.6
Q ss_pred EcCCCccCCHHHHHHHhc
Q 033181 48 VGNLSWSVTTESLTQAFQ 65 (125)
Q Consensus 48 i~~lp~~~~~~~l~~~f~ 65 (125)
|..+|...++++|++.+.
T Consensus 21 ieqvp~kpteeelrkvlp 38 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLP 38 (64)
T ss_pred hhhcCCCCCHHHHHHHHH
Confidence 468899999999887764
No 222
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=31.23 E-value=69 Score=15.33 Aligned_cols=27 Identities=11% Similarity=0.153 Sum_probs=21.0
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCce
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNV 70 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~ 70 (125)
..+++.+.....+.+.|.+++..+|..
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 356777776677888999999998863
No 223
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=30.10 E-value=65 Score=18.28 Aligned_cols=31 Identities=13% Similarity=0.214 Sum_probs=26.2
Q ss_pred EEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 89 FVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 89 fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
|-.|...+-|.+..+.|....|.|+.|++.-
T Consensus 16 f~~~qC~~cA~Al~~~L~~~gI~Gk~i~l~T 46 (100)
T PF15643_consen 16 FKIFQCVECASALKQFLKQAGIPGKIIRLYT 46 (100)
T ss_pred cCceehHHHHHHHHHHHHHCCCCceEEEEEe
Confidence 3467788999999999999999999888854
No 224
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=29.53 E-value=56 Score=15.24 Aligned_cols=14 Identities=7% Similarity=0.332 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHhc
Q 033181 1 MSTVEDCNAVIENL 14 (125)
Q Consensus 1 f~~~~~a~~A~~~~ 14 (125)
|.+..+|..++..+
T Consensus 24 F~TkkeA~~~~~~~ 37 (46)
T PF14657_consen 24 FKTKKEAEKALAKI 37 (46)
T ss_pred CCcHHHHHHHHHHH
Confidence 67888888887764
No 225
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=28.83 E-value=39 Score=17.38 Aligned_cols=16 Identities=13% Similarity=0.326 Sum_probs=9.9
Q ss_pred HHHHHHHhccCCceeE
Q 033181 57 TESLTQAFQEYGNVVG 72 (125)
Q Consensus 57 ~~~l~~~f~~~g~~~~ 72 (125)
--|+++++.+||.+..
T Consensus 4 lyDVqQLLK~fG~~IY 19 (62)
T PF06014_consen 4 LYDVQQLLKKFGIIIY 19 (62)
T ss_dssp HHHHHHHHHTTS----
T ss_pred HHHHHHHHHHCCEEEE
Confidence 3478999999997654
No 226
>PRK11901 hypothetical protein; Reviewed
Probab=28.82 E-value=2.1e+02 Score=20.13 Aligned_cols=59 Identities=17% Similarity=0.244 Sum_probs=35.5
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEE--EEEecCHHHHHHHHHHhCC
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYG--FVCYSTKAEMETALESLNG 107 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~--fv~f~~~~~a~~a~~~l~~ 107 (125)
++|-|.. ....+.|..+....+ +..+.+.....+|+ .||. +-.|.+.++|..|+..|-.
T Consensus 246 YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 246 YTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 4444433 344677888877765 23333333323333 3555 4478999999999998764
No 227
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=27.60 E-value=1.3e+02 Score=18.92 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=26.5
Q ss_pred CCCCCcEEEEcCCCcc---CCHHHHHHHhccCCceeEE
Q 033181 39 YAETDFKLFVGNLSWS---VTTESLTQAFQEYGNVVGA 73 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~---~~~~~l~~~f~~~g~~~~~ 73 (125)
..++++.|||.+|.-+ +-...|.+.+-+-|...++
T Consensus 27 ~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~ 64 (207)
T KOG0635|consen 27 LKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYI 64 (207)
T ss_pred hcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEE
Confidence 3567899999999764 4456788888888876654
No 228
>PF14714 KH_dom-like: KH-domain-like of EngA bacterial GTPase enzymes, C-terminal; PDB: 2HJG_A 1MKY_A.
Probab=27.20 E-value=1.1e+02 Score=16.38 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=22.4
Q ss_pred ccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHH-------HHHHHhccCCceeE
Q 033181 19 YLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTE-------SLTQAFQEYGNVVG 72 (125)
Q Consensus 19 ~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~-------~l~~~f~~~g~~~~ 72 (125)
..|+.+++.|+..-... +.+-+...|-|..+.+. .+++.|.=.|....
T Consensus 22 ~~g~~~Ki~Y~tQv~~~------PPtFv~f~N~~~~~~~sY~ryL~n~lRe~f~f~G~Pi~ 76 (80)
T PF14714_consen 22 SKGKRLKIYYATQVGTR------PPTFVLFVNDPELLPESYKRYLENQLREAFGFEGVPIR 76 (80)
T ss_dssp ETTCC--EEEEEEEETT------TTEEEEEES-CCC--HHHHHHHHHHHHHHH--TTS--E
T ss_pred CCCceeEEEEEEeCCCC------CCEEEEEeCCcccCCHHHHHHHHHHHHHHCCCCceeEE
Confidence 47889999998654322 33445555767777653 45555544444433
No 229
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=26.75 E-value=27 Score=18.21 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCccCCHHH
Q 033181 42 TDFKLFVGNLSWSVTTES 59 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~ 59 (125)
.+..++||++|..+-.+.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 467899999999876553
No 230
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=24.80 E-value=82 Score=14.05 Aligned_cols=16 Identities=13% Similarity=0.129 Sum_probs=11.9
Q ss_pred CCCHHHHHHHHHhcCC
Q 033181 1 MSTVEDCNAVIENLDG 16 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g 16 (125)
|.|.++|+++-..+.-
T Consensus 1 y~tk~eAe~~A~~~GC 16 (34)
T PF12518_consen 1 YPTKAEAEKRAKELGC 16 (34)
T ss_pred CCcHHHHHHHHHHcCC
Confidence 7788888887776643
No 231
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=24.31 E-value=39 Score=24.28 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=42.2
Q ss_pred cEEEEcCCCccCCH--------HHHHHHhcc--CCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHH
Q 033181 44 FKLFVGNLSWSVTT--------ESLTQAFQE--YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103 (125)
Q Consensus 44 ~~l~i~~lp~~~~~--------~~l~~~f~~--~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 103 (125)
+.+|+.+.+..... +++..+|.+ .+.+..+...++.......|..|++|...+.+++...
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 34666666654333 478888887 4566666666665566778888999999999998864
No 232
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=23.93 E-value=2.2e+02 Score=21.55 Aligned_cols=48 Identities=25% Similarity=0.473 Sum_probs=31.3
Q ss_pred CCCcEEEEcCCCccCCH-HHHHHHhccCCceeEEEEeecCCCCCceeEEE
Q 033181 41 ETDFKLFVGNLSWSVTT-ESLTQAFQEYGNVVGARVLYDGESGRSRGYGF 89 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~-~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~f 89 (125)
.....+|.+-.|-+.++ ++|++.+.+. ......+...+.+...-||||
T Consensus 295 ~~~P~Vf~GlyPid~~dye~LrdAleKL-~LNDasl~~E~EtS~ALGfGf 343 (603)
T COG0481 295 EVKPMVFAGLYPVDSDDYEDLRDALEKL-QLNDASLTYEPETSQALGFGF 343 (603)
T ss_pred cCCceEEEeecccChhHHHHHHHHHHhc-ccccceeeeccccchhccCce
Confidence 34457999888887654 7899888876 445555555555544455554
No 233
>PF14268 YoaP: YoaP-like
Probab=23.83 E-value=74 Score=15.08 Aligned_cols=32 Identities=9% Similarity=0.136 Sum_probs=21.5
Q ss_pred EEEEecCHHHHHHHHHHhCCce--ecCeEEEEEE
Q 033181 88 GFVCYSTKAEMETALESLNGVE--LEGRAMRVSL 119 (125)
Q Consensus 88 ~fv~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~ 119 (125)
-++..++.+.|+.+-.-++.+. .+|+-+....
T Consensus 3 ~~i~i~t~e~Aq~~P~pft~yalFYnGkfiT~ei 36 (44)
T PF14268_consen 3 KLIKIDTLEKAQNAPCPFTTYALFYNGKFITNEI 36 (44)
T ss_pred EEEEeccHHHHhcCCCceeEEEEEECCEEEEeec
Confidence 4677788888888766666544 3677666654
No 234
>PF01329 Pterin_4a: Pterin 4 alpha carbinolamine dehydratase; InterPro: IPR001533 DCoH is the dimerisation cofactor of hepatocyte nuclear factor 1 (HNF-1) that functions as both a transcriptional coactivator and a pterin dehydratase []. X-ray crystallographic studies have shown that the ligand binds at four sites per tetrameric enzyme, with little apparent conformational change in the protein.; GO: 0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 2V6T_B 2V6U_A 2V6S_B 2EBB_A 1USM_A 1F93_B 1DCP_C 1DCH_E 3HXA_E 1DCO_C ....
Probab=23.14 E-value=1.5e+02 Score=16.38 Aligned_cols=61 Identities=16% Similarity=0.012 Sum_probs=29.4
Q ss_pred ccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHH-------hCCc---eecCeEEEEEEcc
Q 033181 53 WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALES-------LNGV---ELEGRAMRVSLAQ 121 (125)
Q Consensus 53 ~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~-------l~~~---~~~g~~i~v~~~~ 121 (125)
..++++++...+.....-.. .. . ..=..-..|.+-..+-..+.. ++.+ .++...|.|.+..
T Consensus 3 ~~Ls~~ei~~~L~~l~~W~~---~~--~---~~l~r~f~f~~f~~a~~f~~~Va~~ae~~~HHP~i~~~~~~V~v~l~T 73 (95)
T PF01329_consen 3 PPLSEEEIAEALAELPGWKL---DG--G---GRLERTFKFKDFAEAVEFVNRVAALAEEENHHPDISLGYNRVTVTLTT 73 (95)
T ss_dssp SB-THHHHHHHHHTSTTSEE---ET--S---SEEEEEEE-SSHHHHHHHHHHHHHHHHHHT---EEEEETTEEEEEE-B
T ss_pred CCCCHHHHHHhhhcCcCCEE---CC--C---CcEEEEEEeCCHHHHHHHHHHHHHHHHHhCCCCCeEecCCcEEEEEEe
Confidence 45677888888876543321 11 0 122344577776665443332 2222 3466667776654
No 235
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=22.99 E-value=91 Score=24.99 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhcCCccc--cCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREY--LGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~--~~~~i~v~~~~~~~~ 34 (125)
|.+.+.|-.|+.++.|+++ -|.+.+|.+++..+.
T Consensus 341 ~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 341 FSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 5678899999999999876 488899988865443
No 236
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=21.80 E-value=84 Score=14.06 Aligned_cols=10 Identities=30% Similarity=0.252 Sum_probs=7.1
Q ss_pred CHHHHHHHHH
Q 033181 3 TVEDCNAVIE 12 (125)
Q Consensus 3 ~~~~a~~A~~ 12 (125)
++|||-.|+.
T Consensus 24 tpEDAvEaLi 33 (35)
T PF08383_consen 24 TPEDAVEALI 33 (35)
T ss_pred CHHHHHHHHh
Confidence 6778777764
No 237
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=21.69 E-value=2.7e+02 Score=20.71 Aligned_cols=59 Identities=22% Similarity=0.251 Sum_probs=41.5
Q ss_pred EEcCCCccC---CHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEE
Q 033181 47 FVGNLSWSV---TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 47 ~i~~lp~~~---~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i 115 (125)
.||||+.-. ....+.++-.+||.+-.+.+.. .-.|...+.+.|++++.. ++..+.++..
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 477776532 3456777777999988766632 246677889999999884 6777777664
No 238
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=21.48 E-value=2.6e+02 Score=18.70 Aligned_cols=60 Identities=25% Similarity=0.272 Sum_probs=38.3
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEE-EEeec---CCCCCceeEEEEEecCHHHHHHHHHH
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYD---GESGRSRGYGFVCYSTKAEMETALES 104 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~-~~~~~---~~~~~~~g~~fv~f~~~~~a~~a~~~ 104 (125)
-.+.|.-+|....++.++++|.+.|--..+ .++.+ +..|.++ |..+...-......+++.
T Consensus 119 L~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~~fP~WG~S~-y~~l~L~g~~rl~daL~H 182 (245)
T PF12623_consen 119 LEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDEQFPEWGDSR-YVDLTLTGTVRLADALNH 182 (245)
T ss_pred eEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCccCccccCCc-ceEEEEeeeEEHHHHHhh
Confidence 367788888888999999999999954433 33333 2344443 555666555555555553
No 239
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=21.14 E-value=1.5e+02 Score=15.88 Aligned_cols=26 Identities=15% Similarity=0.420 Sum_probs=21.3
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCce
Q 033181 84 SRGYGFVCYSTKAEMETALESLNGVE 109 (125)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~~~~ 109 (125)
.+||-||+=.+..+...|+.-+.+..
T Consensus 43 lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 43 LKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp STSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 57899999999999999988776644
No 240
>PF11181 YflT: Heat induced stress protein YflT
Probab=21.14 E-value=86 Score=17.54 Aligned_cols=28 Identities=21% Similarity=0.226 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEec
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNF 28 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~ 28 (125)
|.+.++|..||+.|...=+...-|.|--
T Consensus 6 ~~~~~E~~~~I~~L~~~Gy~~ddI~Vva 33 (103)
T PF11181_consen 6 YDNEEEALSAIEELKAQGYSEDDIYVVA 33 (103)
T ss_pred ECCHHHHHHHHHHHHHcCCCcccEEEEE
Confidence 6788999999999876666666666643
No 241
>smart00540 LEM in nuclear membrane-associated proteins. LEM, domain in nuclear membrane-associated proteins, including lamino-associated polypeptide 2 and emerin.
Probab=20.80 E-value=79 Score=14.96 Aligned_cols=16 Identities=19% Similarity=0.490 Sum_probs=13.4
Q ss_pred cCCHHHHHHHhccCCc
Q 033181 54 SVTTESLTQAFQEYGN 69 (125)
Q Consensus 54 ~~~~~~l~~~f~~~g~ 69 (125)
.+++++|+..+.+||.
T Consensus 5 ~LSd~eL~~~L~~~G~ 20 (44)
T smart00540 5 RLSDAELRAELKQYGL 20 (44)
T ss_pred HcCHHHHHHHHHHcCC
Confidence 4678899999999985
No 242
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=20.14 E-value=4e+02 Score=20.31 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeec-C
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD-G 79 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~-~ 79 (125)
|++.++|..|+. +|..-.|..+-+.|-.+.--+ ++|+.+. +...+...|.-..+.++.+ +
T Consensus 389 F~see~a~~ai~--~g~i~~gdVvViRyeGPkGgP--------------GMpEml~---~t~al~g~glg~~VaLITDGR 449 (535)
T TIGR00110 389 FESEEEALEAIL--GGKIKEGDVVVIRYEGPKGGP--------------GMPEMLA---PTSAIKGMGLGKSVALITDGR 449 (535)
T ss_pred ECCHHHHHHHHh--cCCCCCCeEEEEeCCCCCCCC--------------Chhhhcc---hHHHHHhCCCCCceEEeccCc
Q ss_pred CCCCceeEEEEEecCHHHH
Q 033181 80 ESGRSRGYGFVCYSTKAEM 98 (125)
Q Consensus 80 ~~~~~~g~~fv~f~~~~~a 98 (125)
.+|-..|.+..+. ++|.|
T Consensus 450 fSGas~G~~igHV-sPEAa 467 (535)
T TIGR00110 450 FSGGTRGLCIGHV-SPEAA 467 (535)
T ss_pred cCCcCCCCEEEEE-Chhhh
Done!