Query 033181
Match_columns 125
No_of_seqs 108 out of 1787
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 17:48:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033181.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033181hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3md3_A Nuclear and cytoplasmic 100.0 3.2E-27 1.1E-31 143.6 16.4 119 1-122 48-166 (166)
2 2yh0_A Splicing factor U2AF 65 99.9 2.6E-26 8.8E-31 143.3 15.1 123 1-124 58-195 (198)
3 2g4b_A Splicing factor U2AF 65 99.9 2.7E-26 9.1E-31 140.4 14.1 115 1-121 58-172 (172)
4 1b7f_A Protein (SXL-lethal pro 99.9 5E-26 1.7E-30 138.7 14.6 115 1-120 52-168 (168)
5 1fxl_A Paraneoplastic encephal 99.9 8.8E-26 3E-30 137.3 13.7 115 1-120 51-167 (167)
6 1fje_B Nucleolin RBD12, protei 99.9 5.7E-26 1.9E-30 139.4 12.9 114 1-123 61-174 (175)
7 2qfj_A FBP-interacting repress 99.9 2.9E-26 9.9E-31 144.8 11.3 124 1-124 77-206 (216)
8 2ghp_A U4/U6 snRNA-associated 99.9 1.4E-25 4.9E-30 147.5 13.8 123 1-124 166-292 (292)
9 2i2y_A Fusion protein consists 99.9 3.5E-26 1.2E-30 137.5 9.5 118 1-124 20-149 (150)
10 1l3k_A Heterogeneous nuclear r 99.9 5.9E-25 2E-29 136.9 14.8 122 1-124 62-184 (196)
11 4f02_A Polyadenylate-binding p 99.9 1.5E-25 5.2E-30 141.7 11.8 118 1-123 64-181 (213)
12 3smz_A Protein raver-1, ribonu 99.9 1.5E-24 5.1E-29 142.2 14.9 121 1-124 144-265 (284)
13 4fxv_A ELAV-like protein 1; RN 99.9 1E-24 3.4E-29 122.7 12.0 81 42-122 18-98 (99)
14 2kn4_A Immunoglobulin G-bindin 99.9 1.9E-24 6.4E-29 130.9 12.6 124 1-124 20-151 (158)
15 3smz_A Protein raver-1, ribonu 99.9 8.5E-24 2.9E-28 138.6 14.9 112 1-123 64-175 (284)
16 3tyt_A Heterogeneous nuclear r 99.9 3.1E-24 1.1E-28 135.0 12.0 118 1-120 49-204 (205)
17 3nmr_A Cugbp ELAV-like family 99.9 5.3E-24 1.8E-28 130.4 12.1 116 1-121 54-175 (175)
18 1qm9_A Polypyrimidine tract-bi 99.9 4.4E-24 1.5E-28 133.4 11.5 118 1-123 48-197 (198)
19 1rk8_A CG8781-PA, CG8781-PA pr 99.9 8.4E-24 2.9E-28 129.0 12.3 123 1-123 13-152 (165)
20 2adc_A Polypyrimidine tract-bi 99.9 1.2E-23 4.3E-28 134.2 13.1 118 1-123 79-228 (229)
21 3pgw_A U1-A; protein-RNA compl 99.9 2.6E-23 8.8E-28 136.2 14.8 75 42-121 206-281 (282)
22 2cjk_A Nuclear polyadenylated 99.9 8.6E-25 2.9E-29 133.1 6.1 115 1-123 52-166 (167)
23 3s8s_A Histone-lysine N-methyl 99.9 4.7E-23 1.6E-27 117.9 12.3 83 41-123 4-86 (110)
24 2do4_A Squamous cell carcinoma 99.9 2.3E-22 7.8E-27 113.2 13.6 85 39-124 13-97 (100)
25 3md1_A Nuclear and cytoplasmic 99.9 1.5E-22 5.1E-27 110.3 12.3 82 43-124 1-82 (83)
26 3bs9_A Nucleolysin TIA-1 isofo 99.9 1.1E-22 3.8E-27 111.7 11.7 83 41-123 4-86 (87)
27 3sde_A Paraspeckle component 1 99.9 1.3E-22 4.4E-27 131.8 13.7 111 1-123 65-179 (261)
28 2jrs_A RNA-binding protein 39; 99.9 1.7E-22 6E-27 115.2 12.1 89 37-125 20-108 (108)
29 2cq0_A Eukaryotic translation 99.9 4.1E-22 1.4E-26 112.7 13.0 85 40-124 12-96 (103)
30 2lea_A Serine/arginine-rich sp 99.9 1.3E-23 4.3E-28 124.3 6.7 117 2-124 12-128 (135)
31 2lxi_A RNA-binding protein 10; 99.9 1.3E-23 4.4E-28 116.5 6.3 82 43-124 1-84 (91)
32 2dgo_A Cytotoxic granule-assoc 99.9 9.5E-22 3.3E-26 113.3 14.1 86 39-124 11-96 (115)
33 2cqc_A Arginine/serine-rich sp 99.9 5.6E-22 1.9E-26 110.6 12.7 84 39-122 11-94 (95)
34 2x1f_A MRNA 3'-END-processing 99.9 2.4E-22 8.3E-27 112.3 11.2 83 42-124 1-83 (96)
35 2dnz_A Probable RNA-binding pr 99.9 2.3E-22 8E-27 112.2 11.0 84 41-124 3-86 (95)
36 3mdf_A Peptidyl-prolyl CIS-tra 99.9 2.4E-22 8.2E-27 109.9 10.7 82 40-121 4-85 (85)
37 2la6_A RNA-binding protein FUS 99.9 4.9E-22 1.7E-26 111.7 12.0 85 37-121 7-99 (99)
38 2cpz_A CUG triplet repeat RNA- 99.9 6.6E-22 2.2E-26 114.0 12.6 85 40-124 22-106 (115)
39 1x5u_A Splicing factor 3B subu 99.9 3.7E-22 1.3E-26 113.3 11.1 86 39-124 11-96 (105)
40 1whw_A Hypothetical protein ri 99.9 4.7E-22 1.6E-26 111.7 11.3 85 40-124 5-89 (99)
41 2e5h_A Zinc finger CCHC-type a 99.9 7.2E-22 2.5E-26 109.9 11.9 83 39-121 12-94 (94)
42 2ghp_A U4/U6 snRNA-associated 99.9 2.9E-22 1E-26 131.7 12.0 109 1-123 88-197 (292)
43 1p27_B RNA-binding protein 8A; 99.9 4.2E-22 1.4E-26 113.2 11.1 85 40-124 20-104 (106)
44 2dgs_A DAZ-associated protein 99.9 5.9E-22 2E-26 111.3 11.5 84 40-124 7-90 (99)
45 1oo0_B CG8781-PA, drosophila Y 99.9 4.5E-22 1.5E-26 113.8 11.1 86 39-124 22-107 (110)
46 1x5t_A Splicing factor 3B subu 99.9 2.8E-22 9.4E-27 112.1 9.8 84 41-124 3-87 (96)
47 2dnm_A SRP46 splicing factor; 99.9 3E-22 1E-26 113.3 9.9 87 38-124 8-94 (103)
48 4f25_A Polyadenylate-binding p 99.9 7.7E-22 2.6E-26 113.7 11.8 81 42-124 4-84 (115)
49 1x4h_A RNA-binding protein 28; 99.9 9.8E-22 3.3E-26 112.5 11.9 86 39-124 11-102 (111)
50 2dng_A Eukaryotic translation 99.9 2.7E-21 9.2E-26 109.4 13.5 84 39-124 11-94 (103)
51 2cph_A RNA binding motif prote 99.9 8.7E-22 3E-26 112.0 11.3 86 39-124 11-98 (107)
52 2cqp_A RNA-binding protein 12; 99.9 8.4E-22 2.9E-26 110.5 10.9 87 39-125 11-97 (98)
53 2d9p_A Polyadenylate-binding p 99.9 1.7E-21 5.7E-26 110.2 12.1 84 39-124 11-94 (103)
54 2cqb_A Peptidyl-prolyl CIS-tra 99.9 5.4E-22 1.8E-26 112.0 10.0 85 40-124 9-93 (102)
55 1wi8_A EIF-4B, eukaryotic tran 99.9 1.8E-21 6.1E-26 110.3 11.9 84 39-124 11-95 (104)
56 2dnh_A Bruno-like 5, RNA bindi 99.9 3E-21 1E-25 109.5 12.9 84 40-124 12-98 (105)
57 2cpf_A RNA binding motif prote 99.9 1.1E-21 3.9E-26 109.9 10.8 84 41-124 3-89 (98)
58 2lkz_A RNA-binding protein 5; 99.9 3.4E-22 1.2E-26 111.4 8.4 81 42-122 8-94 (95)
59 2kxn_B Transformer-2 protein h 99.9 5.8E-22 2E-26 116.3 9.4 86 39-124 42-127 (129)
60 1u6f_A Tcubp1, RNA-binding pro 99.9 2.9E-21 9.9E-26 114.6 12.4 86 39-124 38-123 (139)
61 3p5t_L Cleavage and polyadenyl 99.9 1.4E-22 4.8E-27 112.1 6.3 81 44-124 2-84 (90)
62 1x5s_A Cold-inducible RNA-bind 99.9 5.9E-22 2E-26 111.9 8.9 85 40-124 9-93 (102)
63 3ulh_A THO complex subunit 4; 99.9 3.6E-21 1.2E-25 109.5 12.3 83 39-122 25-107 (107)
64 2khc_A Testis-specific RNP-typ 99.9 1.9E-21 6.4E-26 112.5 11.0 83 39-121 36-118 (118)
65 3ucg_A Polyadenylate-binding p 99.9 2.6E-21 8.7E-26 106.7 11.0 81 43-124 6-86 (89)
66 2cpe_A RNA-binding protein EWS 99.9 2.6E-21 8.9E-26 111.1 11.3 86 39-124 11-104 (113)
67 2dgp_A Bruno-like 4, RNA bindi 99.9 1.3E-21 4.6E-26 111.1 10.0 86 39-124 9-97 (106)
68 2div_A TRNA selenocysteine ass 99.9 2E-21 6.7E-26 109.2 10.5 83 41-123 7-94 (99)
69 4a8x_A RNA-binding protein wit 99.9 1.7E-21 5.7E-26 107.2 9.9 83 42-124 3-86 (88)
70 2dgv_A HnRNP M, heterogeneous 99.9 3E-21 1E-25 107.0 10.8 83 40-124 5-87 (92)
71 2ywk_A Putative RNA-binding pr 99.9 3.1E-21 1E-25 107.6 10.9 82 40-122 13-94 (95)
72 3ns6_A Eukaryotic translation 99.9 2.3E-22 7.8E-27 113.3 6.3 82 42-123 5-93 (100)
73 2cq3_A RNA-binding protein 9; 99.9 1.4E-20 4.8E-25 106.4 13.7 84 39-124 11-94 (103)
74 1p1t_A Cleavage stimulation fa 99.9 4.6E-22 1.6E-26 112.7 7.6 84 41-124 6-89 (104)
75 1h2v_Z 20 kDa nuclear CAP bind 99.9 8.4E-21 2.9E-25 114.7 12.8 85 40-124 36-120 (156)
76 3r27_A HnRNP L, heterogeneous 99.9 3.2E-21 1.1E-25 107.8 9.9 79 40-124 18-98 (100)
77 2fy1_A RNA-binding motif prote 99.9 3.3E-21 1.1E-25 111.2 10.3 83 41-124 5-87 (116)
78 2dgx_A KIAA0430 protein; RRM d 99.9 5.7E-21 2E-25 106.8 10.9 81 41-124 7-91 (96)
79 3n9u_C Cleavage and polyadenyl 99.9 3E-21 1E-25 116.6 10.4 82 42-123 54-137 (156)
80 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.6E-20 5.4E-25 106.2 12.8 84 39-124 11-94 (103)
81 3ex7_B RNA-binding protein 8A; 99.9 2.5E-21 8.5E-26 113.2 9.7 85 39-123 18-102 (126)
82 2dgw_A Probable RNA-binding pr 99.9 1.5E-20 5.3E-25 104.0 12.5 82 40-124 7-88 (91)
83 2dh8_A DAZ-associated protein 99.9 4.2E-21 1.4E-25 108.9 10.2 85 39-124 12-96 (105)
84 2cqd_A RNA-binding region cont 99.9 9.6E-21 3.3E-25 109.2 11.9 84 39-123 13-96 (116)
85 3s7r_A Heterogeneous nuclear r 99.9 1.2E-20 4.1E-25 103.6 11.7 80 40-120 8-87 (87)
86 2kt5_A RNA and export factor-b 99.9 1.1E-20 3.8E-25 110.1 12.2 84 39-123 31-114 (124)
87 2dhg_A TRNA selenocysteine ass 99.9 2.6E-21 9E-26 109.5 9.2 84 40-124 6-91 (104)
88 2cqg_A TDP-43, TAR DNA-binding 99.9 3.5E-20 1.2E-24 104.7 13.7 85 38-124 10-94 (103)
89 2ek1_A RNA-binding protein 12; 99.9 2.7E-21 9.2E-26 107.8 8.8 82 41-122 13-94 (95)
90 2j76_E EIF-4B, EIF4B, eukaryot 99.9 9E-22 3.1E-26 110.8 6.8 84 39-124 15-99 (100)
91 2do0_A HnRNP M, heterogeneous 99.9 2.3E-20 7.9E-25 107.2 12.7 83 40-123 12-94 (114)
92 1x4a_A Splicing factor, argini 99.9 2.1E-20 7.3E-25 106.6 12.4 83 39-124 18-100 (109)
93 2rs2_A Musashi-1, RNA-binding 99.9 6.8E-21 2.3E-25 108.8 10.1 84 40-124 22-105 (109)
94 1sjq_A Polypyrimidine tract-bi 99.9 3.2E-21 1.1E-25 108.8 8.3 79 40-124 13-93 (105)
95 1x5o_A RNA binding motif, sing 99.9 3.2E-20 1.1E-24 106.7 12.4 84 40-124 22-113 (114)
96 2cpi_A CCR4-NOT transcription 99.9 1.2E-20 4.3E-25 108.0 10.5 85 40-124 12-102 (111)
97 2cq1_A PTB-like protein L; RRM 99.8 4E-20 1.4E-24 104.1 12.0 80 39-124 11-92 (101)
98 2cq4_A RNA binding motif prote 99.8 1.7E-21 5.9E-26 112.0 6.5 80 43-123 25-104 (114)
99 1x4e_A RNA binding motif, sing 99.8 8.7E-22 3E-26 107.7 4.9 82 41-122 3-84 (85)
100 1x4d_A Matrin 3; structural ge 99.8 6.9E-21 2.4E-25 107.2 8.7 79 40-124 12-93 (102)
101 2err_A Ataxin-2-binding protei 99.8 1.2E-20 4.1E-25 107.7 9.7 83 40-124 26-108 (109)
102 1x4b_A Heterogeneous nuclear r 99.8 6.8E-21 2.3E-25 109.8 8.7 82 42-124 26-107 (116)
103 2jwn_A Embryonic polyadenylate 99.8 2.4E-20 8.3E-25 108.7 10.8 82 42-124 35-116 (124)
104 2m2b_A RNA-binding protein 10; 99.8 2.4E-21 8.2E-26 114.0 6.6 84 40-124 20-109 (131)
105 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 2.9E-20 9.8E-25 110.3 11.2 82 39-120 59-140 (140)
106 2dis_A Unnamed protein product 99.8 1.1E-20 3.9E-25 107.7 9.0 84 41-124 6-93 (109)
107 2fc8_A NCL protein; structure 99.8 7.8E-20 2.7E-24 103.1 12.2 84 38-124 10-93 (102)
108 1s79_A Lupus LA protein; RRM, 99.8 7.4E-21 2.5E-25 107.5 7.8 80 41-122 9-88 (103)
109 2a3j_A U1 small nuclear ribonu 99.8 2E-20 6.7E-25 109.3 9.4 82 40-124 26-111 (127)
110 2nlw_A Eukaryotic translation 99.8 1.7E-20 5.7E-25 106.5 8.9 82 40-123 12-100 (105)
111 2xnq_A Nuclear polyadenylated 99.8 6.6E-20 2.3E-24 102.6 11.2 79 38-124 17-96 (97)
112 1why_A Hypothetical protein ri 99.8 6.1E-20 2.1E-24 102.7 11.0 78 41-124 15-94 (97)
113 1nu4_A U1A RNA binding domain; 99.8 1E-20 3.4E-25 105.9 7.8 82 40-124 5-90 (97)
114 2ad9_A Polypyrimidine tract-bi 99.8 2.9E-20 9.8E-25 107.2 9.8 79 40-124 28-108 (119)
115 2dnq_A RNA-binding protein 4B; 99.8 4.9E-20 1.7E-24 101.8 10.4 77 40-124 5-81 (90)
116 1x4c_A Splicing factor, argini 99.8 7.9E-20 2.7E-24 104.1 11.5 78 40-124 12-94 (108)
117 2fc9_A NCL protein; structure 99.8 9.2E-20 3.1E-24 102.7 11.5 81 40-124 12-92 (101)
118 2mss_A Protein (musashi1); RNA 99.8 5.6E-21 1.9E-25 102.2 6.1 75 45-120 1-75 (75)
119 2cpj_A Non-POU domain-containi 99.8 4.5E-20 1.5E-24 103.6 10.1 79 40-124 12-90 (99)
120 1wex_A Hypothetical protein (r 99.8 3.8E-20 1.3E-24 104.7 9.8 79 40-124 12-92 (104)
121 2db1_A Heterogeneous nuclear r 99.8 3.8E-20 1.3E-24 107.1 9.8 81 40-122 14-97 (118)
122 2jvo_A Nucleolar protein 3; nu 99.8 5.4E-20 1.9E-24 104.8 10.2 78 39-124 27-104 (108)
123 2dgt_A RNA-binding protein 30; 99.8 1.5E-19 5E-24 100.2 11.5 77 40-124 7-83 (92)
124 2ki2_A SS-DNA binding protein 99.8 2.6E-21 8.8E-26 106.9 4.3 79 44-123 2-80 (90)
125 1fjc_A Nucleolin RBD2, protein 99.8 3.4E-20 1.2E-24 103.5 8.9 80 40-124 13-92 (96)
126 1wel_A RNA-binding protein 12; 99.8 9.1E-21 3.1E-25 110.5 6.7 84 39-123 21-104 (124)
127 2wbr_A GW182, gawky, LD47780P; 99.8 3.9E-20 1.3E-24 100.4 8.6 74 42-121 6-79 (89)
128 1wf1_A RNA-binding protein RAL 99.8 4.9E-20 1.7E-24 105.3 9.4 94 20-123 6-100 (110)
129 1wg5_A Heterogeneous nuclear r 99.8 7.8E-20 2.7E-24 103.5 10.0 82 40-123 12-94 (104)
130 2ytc_A PRE-mRNA-splicing facto 99.8 1.3E-19 4.3E-24 99.0 10.4 76 40-121 9-85 (85)
131 2cpy_A RNA-binding protein 12; 99.8 3.6E-20 1.2E-24 106.5 8.6 82 40-123 12-94 (114)
132 2hgl_A HNRPF protein, heteroge 99.8 2.7E-20 9.3E-25 109.9 8.2 81 40-122 41-124 (136)
133 2cpx_A Hypothetical protein FL 99.8 7.5E-21 2.6E-25 109.5 5.7 85 40-124 22-106 (115)
134 3lqv_A PRE-mRNA branch site pr 99.8 3.4E-20 1.2E-24 106.7 8.4 81 40-123 5-85 (115)
135 2e5j_A Methenyltetrahydrofolat 99.8 8.1E-20 2.8E-24 102.2 9.7 81 39-124 15-95 (97)
136 1x4g_A Nucleolysin TIAR; struc 99.8 9.1E-20 3.1E-24 104.0 9.8 79 40-124 22-100 (109)
137 2la4_A Nuclear and cytoplasmic 99.8 5.4E-20 1.9E-24 103.6 8.7 77 41-123 25-101 (101)
138 1uaw_A Mouse-musashi-1; RNP-ty 99.8 1.3E-20 4.3E-25 101.2 5.7 76 44-120 1-76 (77)
139 1x4f_A Matrin 3; structural ge 99.8 3.1E-20 1.1E-24 106.0 7.5 79 40-124 22-103 (112)
140 1fxl_A Paraneoplastic encephal 99.8 3.3E-19 1.1E-23 108.1 12.4 82 42-123 1-82 (167)
141 2cpd_A Apobec-1 stimulating pr 99.8 6E-19 2.1E-23 99.0 12.5 79 38-124 10-90 (99)
142 2jvr_A Nucleolar protein 3; RN 99.8 9.9E-20 3.4E-24 104.0 9.3 78 42-123 27-105 (111)
143 1fj7_A Nucleolin RBD1, protein 99.8 4.3E-21 1.5E-25 108.2 3.5 83 40-124 14-96 (101)
144 1wez_A HnRNP H', FTP-3, hetero 99.8 9.1E-20 3.1E-24 102.9 8.8 81 40-123 12-92 (102)
145 2dnp_A RNA-binding protein 14; 99.8 2.3E-19 7.9E-24 99.0 10.1 77 40-124 6-82 (90)
146 4f02_A Polyadenylate-binding p 99.8 3.9E-19 1.3E-23 112.2 12.3 84 40-123 12-95 (213)
147 2dnn_A RNA-binding protein 12; 99.8 1.2E-19 4.1E-24 103.4 8.9 78 42-122 15-92 (109)
148 1b7f_A Protein (SXL-lethal pro 99.8 2.6E-19 8.7E-24 108.8 10.8 83 42-124 2-84 (168)
149 3q2s_C Cleavage and polyadenyl 99.8 7.2E-20 2.5E-24 116.8 8.5 81 42-122 67-149 (229)
150 2dgu_A Heterogeneous nuclear r 99.8 3.8E-19 1.3E-23 100.5 10.2 77 40-124 8-84 (103)
151 2krb_A Eukaryotic translation 99.8 3E-20 1E-24 100.7 5.4 73 43-117 1-80 (81)
152 2e44_A Insulin-like growth fac 99.8 3.3E-19 1.1E-23 99.5 9.1 80 40-123 12-92 (96)
153 2xs2_A Deleted in azoospermia- 99.8 8.7E-20 3E-24 102.9 6.8 80 41-123 7-86 (102)
154 2cqh_A IGF-II mRNA-binding pro 99.8 1.8E-19 6.2E-24 100.0 7.9 77 41-124 6-84 (93)
155 3egn_A RNA-binding protein 40; 99.8 5.7E-20 1.9E-24 109.6 6.2 82 40-124 42-131 (143)
156 2kvi_A Nuclear polyadenylated 99.8 2.3E-19 8E-24 100.2 8.2 76 40-123 7-83 (96)
157 2lcw_A RNA-binding protein FUS 99.7 2.4E-21 8.2E-26 111.8 0.0 84 41-124 5-96 (116)
158 2hvz_A Splicing factor, argini 99.8 9.8E-20 3.4E-24 102.5 6.7 76 44-124 1-76 (101)
159 2lmi_A GRSF-1, G-rich sequence 99.8 3.8E-20 1.3E-24 105.3 4.8 82 40-123 8-92 (107)
160 2f3j_A RNA and export factor b 99.8 3.6E-19 1.2E-23 109.5 9.5 83 40-123 85-167 (177)
161 1sjr_A Polypyrimidine tract-bi 99.8 6.3E-19 2.2E-23 106.4 10.2 78 42-123 45-124 (164)
162 1whx_A Hypothetical protein ri 99.8 1.4E-19 4.8E-24 103.6 6.7 76 42-123 9-84 (111)
163 1iqt_A AUF1, heterogeneous nuc 99.8 4.6E-20 1.6E-24 98.5 4.4 75 45-120 1-75 (75)
164 3pgw_S U1-70K; protein-RNA com 99.8 1.1E-18 3.8E-23 120.3 12.0 83 41-123 100-182 (437)
165 2diu_A KIAA0430 protein; struc 99.8 6.9E-19 2.4E-23 96.4 8.7 74 42-125 8-86 (96)
166 2voo_A Lupus LA protein; RNA-b 99.8 2E-18 6.9E-23 107.5 12.0 117 3-122 63-186 (193)
167 1x5p_A Negative elongation fac 99.8 4.7E-18 1.6E-22 95.0 12.1 77 40-124 12-88 (97)
168 3zzy_A Polypyrimidine tract-bi 99.8 3.1E-18 1.1E-22 99.9 11.5 75 44-123 29-106 (130)
169 1wg1_A KIAA1579 protein, homol 99.8 1.3E-18 4.6E-23 95.6 9.4 75 42-123 4-78 (88)
170 2e5g_A U6 snRNA-specific termi 99.8 1.7E-18 5.7E-23 96.3 9.7 77 42-124 7-83 (94)
171 1l3k_A Heterogeneous nuclear r 99.8 2.6E-18 9E-23 106.7 11.5 83 40-123 10-92 (196)
172 2e5i_A Heterogeneous nuclear r 99.8 8.5E-18 2.9E-22 97.6 11.8 73 45-123 27-102 (124)
173 2dha_A FLJ20171 protein; RRM d 99.8 5.6E-19 1.9E-23 102.6 6.6 80 41-122 21-104 (123)
174 2cq2_A Hypothetical protein LO 99.8 1.6E-18 5.5E-23 99.0 8.3 78 40-123 22-106 (114)
175 2j8a_A Histone-lysine N-methyl 99.8 2.9E-18 1E-22 98.9 9.2 79 44-122 3-95 (136)
176 3d2w_A TAR DNA-binding protein 99.8 4.4E-18 1.5E-22 93.7 9.4 76 40-124 8-85 (89)
177 2hgn_A Heterogeneous nuclear r 99.8 2.6E-19 8.8E-24 106.0 4.2 81 40-123 43-123 (139)
178 3md3_A Nuclear and cytoplasmic 99.8 6.7E-18 2.3E-22 102.2 10.6 79 44-123 1-79 (166)
179 3tyt_A Heterogeneous nuclear r 99.8 5.9E-18 2E-22 106.4 10.2 76 42-122 3-79 (205)
180 2hgm_A HNRPF protein, heteroge 99.8 8.6E-19 2.9E-23 102.1 5.8 80 40-122 39-120 (126)
181 3beg_B Splicing factor, argini 99.8 1.7E-18 5.8E-23 99.7 6.9 76 41-123 14-94 (115)
182 2pe8_A Splicing factor 45; RRM 99.8 3.3E-17 1.1E-21 92.7 11.2 82 41-122 6-93 (105)
183 2bz2_A Negative elongation fac 99.7 1.4E-17 4.7E-22 96.6 9.2 77 40-124 36-112 (121)
184 2qfj_A FBP-interacting repress 99.7 1E-17 3.4E-22 105.5 9.2 82 42-123 27-108 (216)
185 3nmr_A Cugbp ELAV-like family 99.7 3.1E-17 1.1E-21 100.1 10.5 82 42-123 2-88 (175)
186 3pgw_A U1-A; protein-RNA compl 99.7 3.7E-17 1.3E-21 106.9 11.5 81 40-123 6-90 (282)
187 2dnl_A Cytoplasmic polyadenyla 99.7 1.7E-17 5.7E-22 95.3 8.4 64 41-105 6-72 (114)
188 2hzc_A Splicing factor U2AF 65 99.7 2.2E-17 7.5E-22 90.4 8.0 72 41-119 4-86 (87)
189 3u1l_A PRE-mRNA-splicing facto 99.7 2.2E-17 7.5E-22 105.4 8.6 79 40-124 131-230 (240)
190 1wf0_A TDP-43, TAR DNA-binding 99.7 1.2E-17 3.9E-22 91.8 6.3 76 42-124 4-79 (88)
191 2cjk_A Nuclear polyadenylated 99.7 2.2E-17 7.7E-22 100.2 7.7 80 42-123 2-81 (167)
192 2dit_A HIV TAT specific factor 99.7 4E-16 1.4E-20 89.3 11.9 82 39-124 11-103 (112)
193 2adc_A Polypyrimidine tract-bi 99.7 6.6E-17 2.2E-21 103.1 8.4 79 40-123 31-110 (229)
194 3sde_A Paraspeckle component 1 99.7 3.3E-16 1.1E-20 101.6 11.0 78 40-123 19-96 (261)
195 3v4m_A Splicing factor U2AF 65 99.7 3.1E-16 1.1E-20 88.7 8.7 82 41-122 3-96 (105)
196 1fje_B Nucleolin RBD12, protei 99.7 3.5E-17 1.2E-21 100.1 4.6 83 39-123 9-91 (175)
197 3ue2_A Poly(U)-binding-splicin 99.7 1.2E-15 4.2E-20 87.8 10.1 81 42-122 19-108 (118)
198 1qm9_A Polypyrimidine tract-bi 99.7 1.4E-16 4.8E-21 99.3 6.6 76 43-123 3-79 (198)
199 1jmt_A Splicing factor U2AF 35 99.6 2.5E-16 8.5E-21 89.0 5.4 72 48-120 20-103 (104)
200 2g4b_A Splicing factor U2AF 65 99.6 2.4E-15 8.2E-20 91.6 8.6 75 42-123 3-88 (172)
201 2yh0_A Splicing factor U2AF 65 99.6 3.6E-15 1.2E-19 92.7 8.4 75 42-123 3-88 (198)
202 2d9o_A DNAJ (HSP40) homolog, s 99.5 3.4E-14 1.2E-18 79.5 7.9 65 53-124 27-91 (100)
203 3s6e_A RNA-binding protein 39; 99.5 1.4E-13 4.7E-18 78.8 9.8 78 41-122 5-92 (114)
204 3tht_A Alkylated DNA repair pr 99.5 5.2E-14 1.8E-18 94.1 9.1 76 40-121 15-97 (345)
205 2dnr_A Synaptojanin-1; RRM dom 99.4 1.2E-12 4.2E-17 71.0 7.9 74 41-123 5-86 (91)
206 1owx_A Lupus LA protein, SS-B, 99.3 1.1E-11 3.9E-16 71.1 8.4 76 40-121 15-94 (121)
207 1ufw_A Synaptojanin 2; RNP dom 99.2 3.2E-11 1.1E-15 65.8 6.0 74 40-122 12-94 (95)
208 3dxb_A Thioredoxin N-terminall 99.2 7E-11 2.4E-15 74.8 8.4 66 56-121 142-211 (222)
209 4f25_A Polyadenylate-binding p 99.0 2.7E-10 9.3E-15 65.1 3.6 58 1-58 52-112 (115)
210 2l9w_A U4/U6 snRNA-associated- 99.0 7E-09 2.4E-13 57.8 8.8 72 42-119 20-96 (117)
211 2hvz_A Splicing factor, argini 98.6 1.7E-08 5.7E-13 56.2 2.4 52 1-52 44-100 (101)
212 3lqv_A PRE-mRNA branch site pr 98.4 2.9E-08 1E-12 56.4 0.1 56 1-69 54-109 (115)
213 2diu_A KIAA0430 protein; struc 98.3 1.1E-06 3.7E-11 48.1 4.2 34 1-34 53-86 (96)
214 1wey_A Calcipressin 1; structu 98.3 4.8E-06 1.6E-10 46.2 6.7 73 44-122 6-83 (104)
215 1uw4_A UPF3X; nonsense mediate 98.2 3.2E-05 1.1E-09 42.1 8.8 68 44-111 2-71 (91)
216 2dgx_A KIAA0430 protein; RRM d 98.2 2E-06 6.9E-11 47.2 4.1 34 1-34 59-92 (96)
217 2cqh_A IGF-II mRNA-binding pro 98.2 3.9E-06 1.3E-10 45.7 5.1 35 1-35 51-86 (93)
218 1whw_A Hypothetical protein ri 98.2 3.8E-06 1.3E-10 46.2 4.9 36 1-36 57-92 (99)
219 2cqb_A Peptidyl-prolyl CIS-tra 98.1 5.1E-06 1.7E-10 46.0 5.2 36 1-36 61-96 (102)
220 3p5t_L Cleavage and polyadenyl 98.1 1.1E-06 3.8E-11 47.7 2.2 35 1-35 52-86 (90)
221 3md1_A Nuclear and cytoplasmic 98.1 2.7E-06 9.2E-11 45.2 3.7 33 1-33 50-82 (83)
222 2dnp_A RNA-binding protein 14; 98.1 4.3E-06 1.5E-10 45.3 4.3 35 1-35 50-84 (90)
223 4a8x_A RNA-binding protein wit 98.1 2.7E-06 9.3E-11 45.7 3.5 33 1-33 54-86 (88)
224 2dgt_A RNA-binding protein 30; 98.1 5.8E-06 2E-10 44.9 4.7 35 1-35 51-85 (92)
225 2fc8_A NCL protein; structure 98.1 6.8E-06 2.3E-10 45.4 4.7 35 1-35 61-95 (102)
226 3zzy_A Polypyrimidine tract-bi 98.1 3.2E-06 1.1E-10 49.1 3.3 36 1-36 73-110 (130)
227 1x5t_A Splicing factor 3B subu 98.1 7.9E-06 2.7E-10 44.6 4.8 35 1-35 55-89 (96)
228 1x5p_A Negative elongation fac 98.1 6.9E-06 2.3E-10 45.1 4.6 35 1-35 56-90 (97)
229 2fc9_A NCL protein; structure 98.0 1.1E-05 3.6E-10 44.6 5.3 35 1-35 60-94 (101)
230 2cq0_A Eukaryotic translation 98.0 7E-06 2.4E-10 45.5 4.4 35 1-35 64-98 (103)
231 2cpf_A RNA binding motif prote 98.0 8.1E-06 2.8E-10 44.8 4.5 35 1-35 57-91 (98)
232 2cpz_A CUG triplet repeat RNA- 98.0 1E-05 3.4E-10 45.8 5.0 35 1-35 74-108 (115)
233 2wbr_A GW182, gawky, LD47780P; 98.0 4.4E-06 1.5E-10 45.2 3.2 29 1-29 50-78 (89)
234 2dnq_A RNA-binding protein 4B; 98.0 6.6E-06 2.3E-10 44.5 4.0 35 1-35 49-83 (90)
235 2dgo_A Cytotoxic granule-assoc 98.0 9.7E-06 3.3E-10 45.8 4.8 35 1-35 64-98 (115)
236 2lxi_A RNA-binding protein 10; 98.0 8.1E-06 2.8E-10 44.4 4.3 35 1-35 51-86 (91)
237 2cpi_A CCR4-NOT transcription 98.0 5.2E-06 1.8E-10 46.8 3.6 33 1-33 70-102 (111)
238 2dgu_A Heterogeneous nuclear r 98.0 1.2E-05 3.9E-10 44.7 5.0 35 1-35 52-86 (103)
239 2cqi_A Nucleolysin TIAR; RNA r 98.0 9.5E-06 3.3E-10 44.9 4.7 35 1-35 62-96 (103)
240 2cpd_A Apobec-1 stimulating pr 98.0 1.1E-05 3.6E-10 44.5 4.7 34 1-34 58-91 (99)
241 2e5j_A Methenyltetrahydrofolat 98.0 6E-06 2E-10 45.3 3.7 33 1-33 63-95 (97)
242 3bs9_A Nucleolysin TIA-1 isofo 98.0 4E-06 1.4E-10 45.0 2.8 32 1-32 55-86 (87)
243 2do4_A Squamous cell carcinoma 98.0 6.7E-06 2.3E-10 45.3 3.8 34 1-34 65-98 (100)
244 1x4a_A Splicing factor, argini 98.0 9.6E-06 3.3E-10 45.4 4.3 35 1-35 68-102 (109)
245 2cpx_A Hypothetical protein FL 98.0 1.2E-05 4.1E-10 45.4 4.8 36 1-36 74-109 (115)
246 2cq3_A RNA-binding protein 9; 98.0 1.1E-05 3.7E-10 44.7 4.5 35 1-35 62-96 (103)
247 2jvr_A Nucleolar protein 3; RN 98.0 6.2E-06 2.1E-10 46.7 3.5 32 1-32 74-105 (111)
248 2d9p_A Polyadenylate-binding p 98.0 8.3E-06 2.8E-10 45.2 4.0 36 1-36 62-97 (103)
249 1whv_A Poly(A)-specific ribonu 98.0 7.3E-05 2.5E-09 40.9 7.4 56 41-105 14-69 (100)
250 2dhx_A Poly (ADP-ribose) polym 98.0 0.00028 9.6E-09 39.0 9.8 72 42-122 7-83 (104)
251 2fy1_A RNA-binding motif prote 98.0 1.6E-05 5.3E-10 45.2 5.0 34 1-34 55-88 (116)
252 1x4g_A Nucleolysin TIAR; struc 97.9 1.3E-05 4.6E-10 44.9 4.5 35 1-35 68-102 (109)
253 2cpe_A RNA-binding protein EWS 97.9 1.5E-05 5.2E-10 44.9 4.7 35 1-35 72-106 (113)
254 3v4m_A Splicing factor U2AF 65 97.9 5.5E-06 1.9E-10 46.4 2.8 30 1-30 66-95 (105)
255 2jvo_A Nucleolar protein 3; nu 97.9 1.1E-05 3.6E-10 45.3 3.9 34 1-34 72-105 (108)
256 1x5s_A Cold-inducible RNA-bind 97.9 8.4E-06 2.9E-10 45.1 3.4 35 1-35 61-95 (102)
257 2dgw_A Probable RNA-binding pr 97.9 1.3E-05 4.5E-10 43.4 4.2 32 1-33 57-88 (91)
258 2dnz_A Probable RNA-binding pr 97.9 1.2E-05 3.9E-10 43.9 3.9 35 1-35 54-88 (95)
259 3mdf_A Peptidyl-prolyl CIS-tra 97.9 7.2E-06 2.5E-10 43.7 3.0 30 1-30 56-85 (85)
260 1wg1_A KIAA1579 protein, homol 97.9 1.3E-05 4.6E-10 43.1 4.1 32 1-32 47-78 (88)
261 2pe8_A Splicing factor 45; RRM 97.9 7.4E-06 2.5E-10 45.9 3.0 31 1-31 63-93 (105)
262 2e5i_A Heterogeneous nuclear r 97.9 1.6E-05 5.4E-10 45.8 4.5 35 1-35 69-105 (124)
263 2a3j_A U1 small nuclear ribonu 97.9 7.3E-06 2.5E-10 47.5 3.0 33 1-33 79-111 (127)
264 1why_A Hypothetical protein ri 97.9 9.4E-06 3.2E-10 44.5 3.4 33 1-33 60-94 (97)
265 2x1f_A MRNA 3'-END-processing 97.9 9.1E-06 3.1E-10 44.5 3.3 35 1-35 51-85 (96)
266 1x4c_A Splicing factor, argini 97.9 2.1E-05 7.2E-10 44.0 4.9 35 1-35 57-96 (108)
267 2dit_A HIV TAT specific factor 97.9 1.5E-05 5.1E-10 45.0 4.3 33 1-33 71-103 (112)
268 3s6e_A RNA-binding protein 39; 97.9 9E-06 3.1E-10 46.2 3.3 30 1-30 62-91 (114)
269 1x5u_A Splicing factor 3B subu 97.9 1.3E-05 4.5E-10 44.5 3.8 35 1-35 64-98 (105)
270 1nu4_A U1A RNA binding domain; 97.9 1.1E-05 3.9E-10 44.1 3.5 33 1-33 58-90 (97)
271 1fjc_A Nucleolin RBD2, protein 97.9 1.3E-05 4.6E-10 43.7 3.7 33 1-33 60-92 (96)
272 2dnm_A SRP46 splicing factor; 97.9 7.8E-06 2.7E-10 45.3 2.8 35 1-35 62-96 (103)
273 2cqp_A RNA-binding protein 12; 97.9 1.2E-05 4.1E-10 44.1 3.5 32 1-32 64-95 (98)
274 1sjr_A Polypyrimidine tract-bi 97.9 9.8E-06 3.4E-10 48.9 3.3 35 1-35 91-127 (164)
275 2cqc_A Arginine/serine-rich sp 97.9 1.2E-05 4.3E-10 43.7 3.5 31 1-31 64-94 (95)
276 2cph_A RNA binding motif prote 97.9 1.9E-05 6.5E-10 43.9 4.2 35 1-35 65-100 (107)
277 2kt5_A RNA and export factor-b 97.9 2.2E-05 7.5E-10 45.0 4.4 35 1-35 83-117 (124)
278 3s8s_A Histone-lysine N-methyl 97.9 1.2E-05 4E-10 45.4 3.2 32 1-32 55-86 (110)
279 2e44_A Insulin-like growth fac 97.9 1.3E-05 4.4E-10 43.8 3.3 32 1-32 61-92 (96)
280 1wf1_A RNA-binding protein RAL 97.8 1.6E-05 5.4E-10 44.6 3.7 34 1-34 69-102 (110)
281 2xnq_A Nuclear polyadenylated 97.8 1.5E-05 5.1E-10 43.8 3.5 32 1-32 64-95 (97)
282 2cpj_A Non-POU domain-containi 97.8 1.5E-05 5.1E-10 43.8 3.4 34 1-34 58-91 (99)
283 1p1t_A Cleavage stimulation fa 97.8 1.7E-05 6E-10 43.9 3.5 33 1-33 57-89 (104)
284 2dgv_A HnRNP M, heterogeneous 97.8 1.1E-05 3.6E-10 43.8 2.4 34 1-34 55-88 (92)
285 2ek1_A RNA-binding protein 12; 97.8 1.5E-05 5.1E-10 43.4 3.0 30 1-30 64-93 (95)
286 2do0_A HnRNP M, heterogeneous 97.8 3.2E-05 1.1E-09 43.5 4.5 34 1-34 63-96 (114)
287 2dng_A Eukaryotic translation 97.8 2.8E-05 9.6E-10 43.0 4.2 34 1-35 63-96 (103)
288 2dgs_A DAZ-associated protein 97.8 2.8E-05 9.5E-10 42.7 4.1 34 1-35 59-92 (99)
289 1fj7_A Nucleolin RBD1, protein 97.8 1.5E-05 5.2E-10 44.0 3.0 34 1-35 65-98 (101)
290 2dnh_A Bruno-like 5, RNA bindi 97.8 1.8E-05 6.2E-10 43.9 3.4 35 1-35 63-100 (105)
291 3ue2_A Poly(U)-binding-splicin 97.8 1.3E-05 4.5E-10 45.8 2.8 30 1-30 78-107 (118)
292 2div_A TRNA selenocysteine ass 97.8 1.8E-05 6.1E-10 43.5 3.2 33 1-33 59-95 (99)
293 2bz2_A Negative elongation fac 97.8 2.2E-05 7.5E-10 45.0 3.7 35 1-35 80-114 (121)
294 1u6f_A Tcubp1, RNA-binding pro 97.8 4.7E-05 1.6E-09 44.4 5.0 36 1-36 91-126 (139)
295 3egn_A RNA-binding protein 40; 97.8 2.8E-05 9.7E-10 45.6 4.1 35 1-35 99-133 (143)
296 1wwh_A Nucleoporin 35, nucleop 97.8 0.00038 1.3E-08 39.6 8.4 70 42-119 23-93 (119)
297 2ywk_A Putative RNA-binding pr 97.8 1.7E-05 6E-10 43.1 2.9 31 1-31 64-94 (95)
298 2e5g_A U6 snRNA-specific termi 97.8 2.2E-05 7.6E-10 42.7 3.3 34 1-35 52-85 (94)
299 1wi8_A EIF-4B, eukaryotic tran 97.8 3.4E-05 1.1E-09 42.8 4.0 34 1-35 64-97 (104)
300 2dnr_A Synaptojanin-1; RRM dom 97.8 1.8E-05 6.3E-10 42.9 2.7 30 1-31 56-85 (91)
301 1whx_A Hypothetical protein ri 97.7 2.3E-05 7.9E-10 44.1 3.2 31 1-31 53-83 (111)
302 1x4h_A RNA-binding protein 28; 97.7 5.2E-05 1.8E-09 42.4 4.6 35 1-35 64-104 (111)
303 2dhg_A TRNA selenocysteine ass 97.7 2.6E-05 8.7E-10 43.2 3.3 35 1-35 58-93 (104)
304 3r27_A HnRNP L, heterogeneous 97.7 2E-05 6.7E-10 43.7 2.7 33 1-33 64-98 (100)
305 3ctr_A Poly(A)-specific ribonu 97.7 7.3E-05 2.5E-09 41.0 4.8 56 42-106 5-60 (101)
306 2lkz_A RNA-binding protein 5; 97.7 2.6E-05 8.9E-10 42.8 3.1 31 1-31 60-94 (95)
307 2kvi_A Nuclear polyadenylated 97.7 1.2E-05 4.1E-10 44.0 1.5 34 1-34 52-85 (96)
308 3ucg_A Polyadenylate-binding p 97.7 2.8E-05 9.7E-10 41.7 2.8 31 1-32 55-85 (89)
309 2nlw_A Eukaryotic translation 97.7 2.5E-05 8.4E-10 43.5 2.6 32 1-32 68-100 (105)
310 1wex_A Hypothetical protein (r 97.7 2.7E-05 9.4E-10 43.4 2.7 35 1-35 58-94 (104)
311 2ytc_A PRE-mRNA-splicing facto 97.7 2.4E-05 8.4E-10 41.6 2.5 30 1-30 55-85 (85)
312 2dis_A Unnamed protein product 97.7 5E-05 1.7E-09 42.4 3.8 35 1-35 59-95 (109)
313 3ns6_A Eukaryotic translation 97.7 2.7E-05 9.1E-10 43.0 2.5 31 1-31 61-92 (100)
314 1h2v_Z 20 kDa nuclear CAP bind 97.6 5.4E-05 1.8E-09 45.1 3.8 35 1-35 88-122 (156)
315 2dgp_A Bruno-like 4, RNA bindi 97.6 5.7E-05 1.9E-09 41.9 3.7 35 1-35 62-99 (106)
316 3ex7_B RNA-binding protein 8A; 97.6 2.9E-05 9.8E-10 44.6 2.4 34 1-34 71-104 (126)
317 1x4d_A Matrin 3; structural ge 97.6 3.4E-05 1.2E-09 42.9 2.6 34 1-34 59-94 (102)
318 2ki2_A SS-DNA binding protein 97.6 1.6E-05 5.4E-10 42.9 1.0 34 1-35 50-83 (90)
319 2cq2_A Hypothetical protein LO 97.6 6.6E-05 2.2E-09 42.6 3.5 32 1-32 70-106 (114)
320 2mss_A Protein (musashi1); RNA 97.6 4.8E-05 1.6E-09 39.5 2.5 28 1-29 48-75 (75)
321 1sjq_A Polypyrimidine tract-bi 97.5 7E-05 2.4E-09 41.9 2.9 35 1-35 59-95 (105)
322 2lcw_A RNA-binding protein FUS 96.6 1.5E-05 5.1E-10 45.2 0.0 35 1-35 64-98 (116)
323 3n9u_C Cleavage and polyadenyl 97.5 8.8E-05 3E-09 44.4 3.2 31 1-31 106-136 (156)
324 2ad9_A Polypyrimidine tract-bi 97.5 0.00015 5.3E-09 41.4 4.1 36 1-36 74-111 (119)
325 2cq1_A PTB-like protein L; RRM 97.5 0.0002 7E-09 39.6 4.4 35 1-35 58-94 (101)
326 2cqd_A RNA-binding region cont 97.4 0.0002 6.7E-09 40.4 4.1 32 1-33 66-97 (116)
327 1x4b_A Heterogeneous nuclear r 97.4 0.00028 9.4E-09 39.8 4.5 34 1-35 76-109 (116)
328 2l08_A Regulator of nonsense t 97.4 0.00038 1.3E-08 38.1 4.7 69 43-111 9-79 (97)
329 1rk8_A CG8781-PA, CG8781-PA pr 97.4 9.6E-05 3.3E-09 44.4 2.4 34 1-34 121-154 (165)
330 2dh8_A DAZ-associated protein 97.4 0.00015 5E-09 40.2 3.0 34 1-35 65-98 (105)
331 2krb_A Eukaryotic translation 97.3 4.3E-05 1.5E-09 40.4 0.7 26 1-26 54-80 (81)
332 1x4f_A Matrin 3; structural ge 97.3 0.00015 5.1E-09 41.0 2.6 34 1-34 69-104 (112)
333 1x4e_A RNA binding motif, sing 97.2 2.5E-05 8.7E-10 41.6 -0.9 30 1-30 54-83 (85)
334 2db1_A Heterogeneous nuclear r 97.2 0.00021 7.2E-09 40.6 2.8 30 1-31 68-97 (118)
335 1wel_A RNA-binding protein 12; 97.2 0.00014 4.7E-09 41.7 1.8 30 1-31 74-103 (124)
336 2hgl_A HNRPF protein, heteroge 97.2 0.00023 7.9E-09 41.6 2.8 29 1-30 95-123 (136)
337 3beg_B Splicing factor, argini 97.2 0.00033 1.1E-08 39.6 3.3 32 1-32 58-94 (115)
338 2dnn_A RNA-binding protein 12; 97.2 0.00042 1.4E-08 38.9 3.7 29 1-30 63-91 (109)
339 2m2b_A RNA-binding protein 10; 97.2 0.00021 7.2E-09 41.3 2.5 34 1-35 74-111 (131)
340 3p3d_A Nucleoporin 53; structu 97.2 0.00065 2.2E-08 39.2 4.3 77 43-121 7-97 (132)
341 2cq4_A RNA binding motif prote 97.2 0.00014 4.8E-09 40.9 1.6 31 1-32 74-104 (114)
342 2f3j_A RNA and export factor b 97.2 0.00019 6.6E-09 43.7 2.3 32 1-32 136-167 (177)
343 1uaw_A Mouse-musashi-1; RNP-ty 97.1 0.00021 7.2E-09 37.1 2.0 28 1-29 49-76 (77)
344 1wez_A HnRNP H', FTP-3, hetero 97.1 0.00027 9.2E-09 39.1 2.5 32 1-33 62-93 (102)
345 2cpy_A RNA-binding protein 12; 97.0 0.00055 1.9E-08 38.5 3.1 31 1-32 64-94 (114)
346 2lmi_A GRSF-1, G-rich sequence 97.0 0.00027 9.1E-09 39.4 1.4 30 1-31 62-91 (107)
347 1wg5_A Heterogeneous nuclear r 96.9 0.00051 1.7E-08 38.0 2.5 32 1-33 64-95 (104)
348 3q2s_C Cleavage and polyadenyl 96.9 0.0003 1E-08 44.6 1.6 31 1-31 119-149 (229)
349 3u1l_A PRE-mRNA-splicing facto 96.9 0.00048 1.6E-08 44.1 2.4 33 1-33 186-230 (240)
350 2cqg_A TDP-43, TAR DNA-binding 96.9 0.0021 7.1E-08 35.3 4.7 33 1-35 64-96 (103)
351 1s79_A Lupus LA protein; RRM, 96.8 0.00036 1.2E-08 38.7 1.2 29 1-30 59-87 (103)
352 3pgw_S U1-70K; protein-RNA com 96.8 0.0013 4.4E-08 45.6 4.1 33 1-33 151-183 (437)
353 1iqt_A AUF1, heterogeneous nuc 96.7 0.00061 2.1E-08 35.1 1.6 28 1-29 48-75 (75)
354 2d9o_A DNAJ (HSP40) homolog, s 96.7 0.002 7E-08 35.5 3.7 32 1-34 61-92 (100)
355 2hgn_A Heterogeneous nuclear r 96.7 0.00051 1.7E-08 40.3 1.1 32 1-33 93-124 (139)
356 2i2y_A Fusion protein consists 96.6 0.0007 2.4E-08 39.9 1.7 41 81-122 9-50 (150)
357 1wey_A Calcipressin 1; structu 96.4 0.007 2.4E-07 33.5 4.4 33 1-33 53-85 (104)
358 3pq1_A Poly(A) RNA polymerase; 96.3 0.0033 1.1E-07 43.9 3.4 54 44-103 54-107 (464)
359 2kn4_A Immunoglobulin G-bindin 96.2 0.0077 2.6E-07 35.6 4.4 33 73-107 3-35 (158)
360 2dha_A FLJ20171 protein; RRM d 96.1 0.003 1E-07 36.2 2.1 29 1-30 75-103 (123)
361 2dnl_A Cytoplasmic polyadenyla 95.8 0.032 1.1E-06 31.1 5.7 26 1-28 59-84 (114)
362 2xs2_A Deleted in azoospermia- 95.5 0.0018 6.3E-08 35.4 -0.5 31 1-33 57-87 (102)
363 2l9w_A U4/U6 snRNA-associated- 95.0 0.026 8.9E-07 31.6 3.3 27 1-27 69-95 (117)
364 1x5o_A RNA binding motif, sing 95.0 0.0053 1.8E-07 34.2 0.5 20 1-20 73-92 (114)
365 3tht_A Alkylated DNA repair pr 93.7 0.039 1.3E-06 37.2 2.5 30 1-30 63-97 (345)
366 1wf0_A TDP-43, TAR DNA-binding 93.6 0.074 2.5E-06 27.9 3.1 33 1-35 49-81 (88)
367 3d45_A Poly(A)-specific ribonu 93.5 0.4 1.4E-05 34.0 7.4 57 42-107 439-495 (507)
368 2j8a_A Histone-lysine N-methyl 91.8 0.084 2.9E-06 30.6 1.8 24 7-30 69-94 (136)
369 3d2w_A TAR DNA-binding protein 89.8 0.27 9.2E-06 26.0 2.6 29 1-33 55-85 (89)
370 3p3d_A Nucleoporin 53; structu 88.6 0.38 1.3E-05 27.8 2.7 28 1-29 69-96 (132)
371 2dhx_A Poly (ADP-ribose) polym 85.6 0.82 2.8E-05 25.2 2.8 46 1-56 54-99 (104)
372 1wwh_A Nucleoporin 35, nucleop 82.8 0.74 2.5E-05 26.1 2.0 27 1-28 66-93 (119)
373 1ufw_A Synaptojanin 2; RNP dom 81.4 1.8 6E-05 23.5 3.1 17 14-30 77-93 (95)
374 1owx_A Lupus LA protein, SS-B, 75.3 2.4 8.1E-05 24.0 2.5 29 1-29 62-93 (121)
375 2g0c_A ATP-dependent RNA helic 67.1 2.7 9.2E-05 21.3 1.5 34 87-121 42-75 (76)
376 1gcc_A Ethylene responsive ele 43.9 12 0.00041 18.4 1.5 13 1-13 33-45 (63)
377 2lfv_A Protein DAMX; cell divi 41.5 8 0.00027 21.3 0.0 17 1-17 71-87 (106)
378 3lpe_A Putative transcription 32.6 37 0.0013 17.9 2.4 25 84-108 49-73 (92)
379 2knz_A Ubiquilin-4; cytoplasm, 31.9 39 0.0013 15.8 2.2 16 1-16 23-38 (53)
380 4e8u_A Putative uncharacterize 31.5 88 0.003 18.9 6.0 47 45-94 14-71 (172)
381 1uzc_A Hypothetical protein FL 30.3 34 0.0012 17.2 1.9 14 1-14 11-24 (71)
382 4eyt_A Telomerase associated p 29.0 71 0.0024 17.0 7.4 57 42-106 11-67 (129)
383 1wgn_A UBAP1, ubiquitin associ 28.5 41 0.0014 16.6 1.9 14 3-16 32-45 (63)
384 2jy5_A Ubiquilin-1; UBA, alter 26.8 55 0.0019 15.2 2.2 16 1-16 24-39 (52)
385 2bwb_A Ubiquitin-like protein 24.9 58 0.002 14.7 2.2 16 1-16 19-34 (46)
386 1ify_A HHR23A, UV excision rep 23.9 63 0.0022 14.7 2.1 14 3-16 21-34 (49)
387 2nn4_A Hypothetical protein YQ 23.6 24 0.00083 18.0 0.6 17 56-72 4-20 (72)
388 1z96_A DNA-damage, UBA-domain 23.4 54 0.0019 13.8 2.1 14 3-16 17-30 (40)
389 3fjv_A Uncharacterized novel p 23.3 1.4E+02 0.0047 18.4 4.6 58 56-120 66-130 (194)
390 1wr1_B Ubiquitin-like protein 22.7 71 0.0024 15.3 2.2 16 1-16 29-44 (58)
391 2rf4_B DNA-directed RNA polyme 21.5 93 0.0032 16.4 2.5 26 42-67 18-43 (87)
392 3p8b_B Transcription antitermi 21.1 82 0.0028 18.1 2.7 25 84-108 42-66 (152)
393 2dah_A Ubiquilin-3; UBA domain 20.8 81 0.0028 14.8 2.2 16 1-16 21-36 (54)
394 2g3q_A Protein YBL047C; endocy 20.8 68 0.0023 13.9 1.9 14 3-16 17-30 (43)
No 1
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.2e-27 Score=143.57 Aligned_cols=119 Identities=29% Similarity=0.666 Sum_probs=109.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.+.++|.+|+..|||..+.|++|.+.++...... ...+.+.|||+|||..+++++|+++|++||.+..+.+..+..
T Consensus 48 f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 124 (166)
T 3md3_A 48 YHQSHDANIALQTLNGKQIENNIVKINWAFQSQQS---SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQ 124 (166)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCCCC---CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTT
T ss_pred eCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCCC---CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 68999999999999999999999999998765443 345678999999999999999999999999999999999888
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+|.++|+|||+|.+.++|..|+..|||..++|+.|+|.||++
T Consensus 125 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 125 TGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp TCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 899999999999999999999999999999999999999874
No 2
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=2.6e-26 Score=143.29 Aligned_cols=123 Identities=21% Similarity=0.430 Sum_probs=109.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC---------------CCCCCCCcEEEEcCCCccCCHHHHHHHhc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL---------------PLYAETDFKLFVGNLSWSVTTESLTQAFQ 65 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~---------------~~~~~~~~~l~i~~lp~~~~~~~l~~~f~ 65 (125)
|.++++|.+|+ .|||..+.|++|.|.++....... .....+.++|||+|||..+++++|+++|+
T Consensus 58 F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 136 (198)
T 2yh0_A 58 FRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLT 136 (198)
T ss_dssp ESCSHHHHHHG-GGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHH
T ss_pred eCCHHHHHHHH-HhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 78999999999 799999999999999986542211 11224668999999999999999999999
Q ss_pred cCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 66 EYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 66 ~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+||.+..+.+..+..+|.++|+|||+|.+.++|..|+..|+|..++|+.|+|.++.++.
T Consensus 137 ~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 137 SFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp TBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred HcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999987789999999999999999999999999999999999999998764
No 3
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=2.7e-26 Score=140.41 Aligned_cols=115 Identities=23% Similarity=0.461 Sum_probs=105.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.++++|.+|+ .+||..+.|++|.|.++...... ...++|||+|||..+++++|+++|++||.+..+.+..+..
T Consensus 58 f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~~~~-----~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 131 (172)
T 2g4b_A 58 FRSVDETTQAM-AFDGIIFQGQSLKIRRPHDYQPL-----PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSA 131 (172)
T ss_dssp ESSHHHHHHHG-GGTTCEETTEECEEECCSSCCCC-----TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred eCCHHHHHHHH-HhCCcEecCceeeecCCcccCCC-----CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCC
Confidence 78999999999 79999999999999987654322 3467899999999999999999999999999999999878
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
+|.++|+|||+|.+.++|.+|+..|||..++|+.|.|.+|.
T Consensus 132 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 132 TGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 89999999999999999999999999999999999999974
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.94 E-value=5e-26 Score=138.65 Aligned_cols=115 Identities=31% Similarity=0.525 Sum_probs=106.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.++++|.+|++.|+|..+.|++|.|.++.+.... .++++|||+|||..+++++|+++|++||.+..+.+..+..
T Consensus 52 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~-----~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 52 FTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGES-----IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCSST-----TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred ECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCccc-----CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 68999999999999999999999999999755432 3567899999999999999999999999999999999877
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecC--eEEEEEEc
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSLA 120 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~ 120 (125)
+|.++|+|||+|.+.++|..|+..|||..+.| ++|+|.||
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 89999999999999999999999999999977 99999986
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.94 E-value=8.8e-26 Score=137.30 Aligned_cols=115 Identities=29% Similarity=0.545 Sum_probs=105.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.++++|.+|++.|||..+.|++|.|.++.+... ..+.+.|||+|||..+++++|+++|++||.+..+.+..+..
T Consensus 51 f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~-----~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 51 YIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA-----SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCCG-----GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred ECCHHHHHHHHHHcCCCccCCceEEEEecCCCcc-----cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 6899999999999999999999999999975433 23567899999999999999999999999999999998877
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecCeE--EEEEEc
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRA--MRVSLA 120 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~--i~v~~~ 120 (125)
+|.++|+|||+|.+.++|..|+..|||..++|+. |+|.||
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 8999999999999999999999999999999964 888886
No 6
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=5.7e-26 Score=139.42 Aligned_cols=114 Identities=22% Similarity=0.449 Sum_probs=102.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.++++|.+|++ |||..+.|++|.|.++...+.. ...+.++|||+|||..+++++|+++|++||.|..+ ..
T Consensus 61 f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~~~~~~---~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~ 131 (175)
T 1fje_B 61 FESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDSK---KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQ 131 (175)
T ss_dssp ESSHHHHHHHHH-GGGEEETTEEEEEECCCCSSCS---TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CS
T ss_pred ECCHHHHHHHHh-cCCCEeCCeEEEEecCCCcccc---ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cC
Confidence 789999999995 9999999999999998765433 23466899999999999999999999999988765 46
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++.++|+|||+|.+.++|.+|+..|+|..++|+.|+|.|+.+|
T Consensus 132 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 132 DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp SSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred CCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 7888999999999999999999999999999999999999987
No 7
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=2.9e-26 Score=144.79 Aligned_cols=124 Identities=21% Similarity=0.385 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCC------CCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP------LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGAR 74 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~------~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~ 74 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.......+ ....+.++|||+|||..+++++|+++|++||.|..+.
T Consensus 77 f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~ 156 (216)
T 2qfj_A 77 YEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSAT 156 (216)
T ss_dssp ESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEE
T ss_pred eCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEE
Confidence 7899999999999999999999999998765432211 1124567999999999999999999999999999999
Q ss_pred EeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 75 VLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 75 ~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+..+..+|.++|+|||+|.+.++|..|+..|||..|+|+.|+|.++.++.
T Consensus 157 i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 157 LARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred EEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 99998889999999999999999999999999999999999999998763
No 8
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.94 E-value=1.4e-25 Score=147.49 Aligned_cols=123 Identities=21% Similarity=0.306 Sum_probs=106.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCC--CCCCCcEEEEcCCCcc-CCHHHHHHHhccCCceeEEEEee
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL--YAETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLY 77 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~--~~~~~~~l~i~~lp~~-~~~~~l~~~f~~~g~~~~~~~~~ 77 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+....... ...+.+.|||+|||.. +++++|+++|++||.|..+.+..
T Consensus 166 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~ 245 (292)
T 2ghp_A 166 VTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPA 245 (292)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCS
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEe
Confidence 78999999999999999999999999999766544332 3456789999999999 99999999999999999999887
Q ss_pred cCC-CCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 78 DGE-SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 78 ~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+.. +|.++|+|||+|.+.++|..|+ .|||..|+|+.|.|.|+.+|.
T Consensus 246 ~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k~ 292 (292)
T 2ghp_A 246 GQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKKP 292 (292)
T ss_dssp CCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCCC
T ss_pred cCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCCC
Confidence 754 4889999999999999999999 999999999999999999873
No 9
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.94 E-value=3.5e-26 Score=137.54 Aligned_cols=118 Identities=23% Similarity=0.324 Sum_probs=103.9
Q ss_pred CCCHHHHHHHHHhc-CCccccCeEEEEeccCCCC-----------CCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCC
Q 033181 1 MSTVEDCNAVIENL-DGREYLGRILRVNFSDKPK-----------PKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYG 68 (125)
Q Consensus 1 f~~~~~a~~A~~~~-~g~~~~~~~i~v~~~~~~~-----------~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g 68 (125)
|.++++|++|++.+ ||..+.| .+.+.++.... ........+.++|||+|||+.+++++|+++|++||
T Consensus 20 ~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G 98 (150)
T 2i2y_A 20 AVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYG 98 (150)
T ss_dssp CSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHS
T ss_pred ecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 67899999999999 9999999 99999886421 12233345678999999999999999999999999
Q ss_pred ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 69 NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 69 ~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
.|..+.+..+ ++|||||+|.+.++|..|+..|||..++|+.|+|.++.+++
T Consensus 99 ~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 99 PLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp CEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 9999988765 47899999999999999999999999999999999999886
No 10
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=5.9e-25 Score=136.93 Aligned_cols=122 Identities=20% Similarity=0.336 Sum_probs=102.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCC-CCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP-LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG 79 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~-~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~ 79 (125)
|.+.++|.+|+.. ++..+.|+.|.+.++........ ....+.++|||+|||..+++++|+++|++||.|..+.+..+.
T Consensus 62 f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 62 YATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp ESSHHHHHHHHHT-CSCEETTEECEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred eCCHHHHHHHHhc-CCCEECCEEeeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 7899999999985 89999999999999876543322 223456899999999999999999999999999999999988
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 80 ~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
.+|.++|+|||+|.+.++|.+|+.. +|..++|+.|.|.++.++.
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC---
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChh
Confidence 8899999999999999999999986 8999999999999998874
No 11
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.93 E-value=1.5e-25 Score=141.67 Aligned_cols=118 Identities=25% Similarity=0.467 Sum_probs=104.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.+.++|.+|++.+||..+.|+.|++.++....... ......|||+|||..+++++|+++|++||.|..+.++.+.
T Consensus 64 F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~---~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~- 139 (213)
T 4f02_A 64 FQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLR---KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE- 139 (213)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHH---HHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-
T ss_pred eCCHHHHHHHHHHhhhhhcCCccccccccccccccc---ccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-
Confidence 789999999999999999999999999886443221 2245689999999999999999999999999999998873
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+..+|+|||+|.+.++|++|+..|||..|+|+.|+|.++.++
T Consensus 140 -~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 140 -NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp -TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred -CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 347899999999999999999999999999999999999875
No 12
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=1.5e-24 Score=142.17 Aligned_cols=121 Identities=19% Similarity=0.232 Sum_probs=109.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccC-CHHHHHHHhccCCceeEEEEeecC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSV-TTESLTQAFQEYGNVVGARVLYDG 79 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~-~~~~l~~~f~~~g~~~~~~~~~~~ 79 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+.... ....+.++|||+|||..+ ++++|+++|++||.|..+.+..+.
T Consensus 144 f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~~~~--~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~ 221 (284)
T 3smz_A 144 YMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLT--PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ 221 (284)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCGGGCC--TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCC--cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC
Confidence 68999999999999999999999999999765433 223467889999999995 999999999999999999988874
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 80 ~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+|.++|+|||+|.+.++|..|+..|+|..++|+.|.|.|+.++.
T Consensus 222 -~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 265 (284)
T 3smz_A 222 -DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGP 265 (284)
T ss_dssp -SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSS
T ss_pred -CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCC
Confidence 78899999999999999999999999999999999999998864
No 13
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.93 E-value=1e-24 Score=122.72 Aligned_cols=81 Identities=35% Similarity=0.588 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|+.|+..|||..|+|+.|+|.||+
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 46789999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred C
Q 033181 122 G 122 (125)
Q Consensus 122 ~ 122 (125)
|
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 7
No 14
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.92 E-value=1.9e-24 Score=130.94 Aligned_cols=124 Identities=23% Similarity=0.380 Sum_probs=100.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEecc-------C-CCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFS-------D-KPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG 72 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~-------~-~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~ 72 (125)
|.++++|++|+..+++....+..+.+... . ...........+.++|||+|||..+++++|+++|++||.|..
T Consensus 20 f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~ 99 (158)
T 2kn4_A 20 AVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGD 99 (158)
T ss_dssp CSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEE
T ss_pred HHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEE
Confidence 78999999999988764433333332211 1 111122223355789999999999999999999999999999
Q ss_pred EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 73 ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 73 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+.+..+..+|.++|||||+|.+.++|+.|+..|||..|+|+.|+|.++.+++
T Consensus 100 ~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 100 VYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp EECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred EEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999887889999999999999999999999999999999999999998764
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=8.5e-24 Score=138.56 Aligned_cols=112 Identities=27% Similarity=0.395 Sum_probs=105.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.++++|.+|+..|||..+.|++|.|.++. ++++|||+|||..+++++|+++|++||.+..+.+..+..
T Consensus 64 f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-----------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 132 (284)
T 3smz_A 64 LLNGEQAEAAINAFHQSRLRERELSVQLQP-----------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSER 132 (284)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECC-----------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred eCCHHHHHHHHHHcCCCeeCCeEEEEEecC-----------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCC
Confidence 789999999999999999999999999863 346899999999999999999999999999999998888
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+|.++|+|||+|.+.++|..|+..++|..++|+.|.|.++.++
T Consensus 133 ~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 133 TGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 8999999999999999999999999999999999999998865
No 16
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.92 E-value=3.1e-24 Score=135.00 Aligned_cols=118 Identities=18% Similarity=0.217 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCC--------------------------------CCCCCCcEEEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP--------------------------------LYAETDFKLFV 48 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~--------------------------------~~~~~~~~l~i 48 (125)
|+++++|++|++.|||..+.|++|+|.++......+. ....++++|||
T Consensus 49 f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v 128 (205)
T 3tyt_A 49 MADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHF 128 (205)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEE
T ss_pred ECCHHHHHHHHHHhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEE
Confidence 6899999999999999999999999999864321100 01134678999
Q ss_pred cCCCccCCHHHHHHHhccCCce--eEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCe----EEEEEEc
Q 033181 49 GNLSWSVTTESLTQAFQEYGNV--VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR----AMRVSLA 120 (125)
Q Consensus 49 ~~lp~~~~~~~l~~~f~~~g~~--~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~----~i~v~~~ 120 (125)
+|||+.+++++|+++|++||.+ ..+.+..+. +..+|+|||+|.+.++|..|+..|||..|.|. ++.|+++
T Consensus 129 ~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 129 FNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred eCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 9999999999999999999998 788776553 45569999999999999999999999999776 5666654
No 17
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=5.3e-24 Score=130.37 Aligned_cols=116 Identities=26% Similarity=0.395 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHhcCCcccc---CeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEee
Q 033181 1 MSTVEDCNAVIENLDGREYL---GRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLY 77 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~---~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~ 77 (125)
|.++++|.+|++.|||..+. ++++.+.++...... ....+.|||+|||..+++++|+++|++||.|..+.+..
T Consensus 54 f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~ 129 (175)
T 3nmr_A 54 FYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSEKNN----AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILR 129 (175)
T ss_dssp ESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGGCCS----CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEE
T ss_pred ECCHHHHHHHHHHhcCcEEccCCccceEEccccccccc----cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEE
Confidence 68999999999999998776 678888877644332 33567899999999999999999999999999999988
Q ss_pred cCCCCCceeEEEEEecCHHHHHHHHHHhCCceec---CeEEEEEEcc
Q 033181 78 DGESGRSRGYGFVCYSTKAEMETALESLNGVELE---GRAMRVSLAQ 121 (125)
Q Consensus 78 ~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~i~v~~~~ 121 (125)
+ .+|.++|+|||+|.+.++|.+|+..|||..+. +++|.|.||.
T Consensus 130 ~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 130 G-PDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp C-TTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred C-CCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 8 46889999999999999999999999998775 4999999984
No 18
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.91 E-value=4.4e-24 Score=133.39 Aligned_cols=118 Identities=23% Similarity=0.363 Sum_probs=102.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCC------------------------------CCCCCCcEEEEcC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP------------------------------LYAETDFKLFVGN 50 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~------------------------------~~~~~~~~l~i~~ 50 (125)
|.++++|.+|+..|||..+.|++|.|.++.......+ ....++++|||+|
T Consensus 48 f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~n 127 (198)
T 1qm9_A 48 MADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSN 127 (198)
T ss_dssp CTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECC
T ss_pred ECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeC
Confidence 7899999999999999999999999999864421110 1123578999999
Q ss_pred CCccCCHHHHHHHhccCC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec-CeEEEEEEccCC
Q 033181 51 LSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLAQGR 123 (125)
Q Consensus 51 lp~~~~~~~l~~~f~~~g-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~ 123 (125)
||..+++++|+++|++|| .+..+.+... .+|+|||+|.+.++|..|+..|||..++ |+.|+|.|++++
T Consensus 128 l~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 128 IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp CCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999999999 9999988543 2689999999999999999999999999 999999999875
No 19
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.91 E-value=8.4e-24 Score=128.98 Aligned_cols=123 Identities=24% Similarity=0.369 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHhcCCcccc--CeEEEEeccCCC---------------CCCCCCCCCCCcEEEEcCCCccCCHHHHHHH
Q 033181 1 MSTVEDCNAVIENLDGREYL--GRILRVNFSDKP---------------KPKLPLYAETDFKLFVGNLSWSVTTESLTQA 63 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~--~~~i~v~~~~~~---------------~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~ 63 (125)
|++.++|+.|+..+++.... |+.....++... ....+....++++|||+|||..+++++|+.+
T Consensus 13 ~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~ 92 (165)
T 1rk8_A 13 FEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQEK 92 (165)
T ss_dssp -----------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHHHH
T ss_pred hhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 67788999999999987665 555554442110 1111223455688999999999999999999
Q ss_pred hccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 64 FQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 64 f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
|++||.|..+.+..+..+|.++|||||+|.+.++|+.|+..|||..|.|+.|.|.|+.++
T Consensus 93 F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 93 FCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred hhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 999999999999999889999999999999999999999999999999999999998765
No 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.91 E-value=1.2e-23 Score=134.20 Aligned_cols=118 Identities=23% Similarity=0.363 Sum_probs=101.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCC------------------------------CCCCCCcEEEEcC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLP------------------------------LYAETDFKLFVGN 50 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~------------------------------~~~~~~~~l~i~~ 50 (125)
|.+.++|.+|++.|||..+.|++|.|.++.......+ ....++++|||+|
T Consensus 79 F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~n 158 (229)
T 2adc_A 79 MADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSN 158 (229)
T ss_dssp ESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeC
Confidence 7899999999999999999999999999864421100 1123468999999
Q ss_pred CCccCCHHHHHHHhccCC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec-CeEEEEEEccCC
Q 033181 51 LSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLAQGR 123 (125)
Q Consensus 51 lp~~~~~~~l~~~f~~~g-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~ 123 (125)
||..+++++|+++|++|| .|..+.+... .+|+|||+|.+.++|..|+..|+|..++ |+.|+|.|++++
T Consensus 159 lp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 159 IPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred CCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 999999999999999999 9999888543 2579999999999999999999999999 999999999875
No 21
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=2.6e-23 Score=136.16 Aligned_cols=75 Identities=21% Similarity=0.390 Sum_probs=69.6
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec-CeEEEEEEc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE-GRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~ 120 (125)
++++|||+|||..+++++|+++|++||.|..+.+..+. +|+|||+|.+.++|..|+..|||..++ |+.|+|.|+
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 45789999999999999999999999999999887552 579999999999999999999999999 999999998
Q ss_pred c
Q 033181 121 Q 121 (125)
Q Consensus 121 ~ 121 (125)
+
T Consensus 281 k 281 (282)
T 3pgw_A 281 K 281 (282)
T ss_pred c
Confidence 6
No 22
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.91 E-value=8.6e-25 Score=133.12 Aligned_cols=115 Identities=19% Similarity=0.443 Sum_probs=103.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.++++|.+|+.. +..+.|+.|.+.++.+... ..+..+|||+|||..+++++|+++|++||.|..+.+..+..
T Consensus 52 f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~~-----~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 124 (167)
T 2cjk_A 52 FEKPSSVDEVVKT--QHILDGKVIDPKRAIPRDE-----QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKD 124 (167)
T ss_dssp ESSTHHHHHHHHS--CCEETTEECCCEECCCHHH-----HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSS
T ss_pred EccHHHHHHHHhc--ccccCCeEcccccccchhh-----ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCC
Confidence 6789999999994 6789999999988764322 23457899999999999999999999999999999998877
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+|.++|+|||+|.+.++|.+|+. ++|..++|+.|.|.++.|+
T Consensus 125 ~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 125 TGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp SSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred CCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 89999999999999999999998 8999999999999999987
No 23
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.91 E-value=4.7e-23 Score=117.88 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|+.|+..|||..++|+.|+|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45678999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred cCC
Q 033181 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
..+
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 764
No 24
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.90 E-value=2.3e-22 Score=113.22 Aligned_cols=85 Identities=21% Similarity=0.468 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567889999999999999999999999999999999886 88999999999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.+++
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 999875
No 25
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.90 E-value=1.5e-22 Score=110.30 Aligned_cols=82 Identities=35% Similarity=0.766 Sum_probs=78.3
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+++|||+|||..+++++|+++|++||.+..+.+..+..+|.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999999988899999999999999999999999999999999999999998
Q ss_pred CC
Q 033181 123 RR 124 (125)
Q Consensus 123 ~~ 124 (125)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 26
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.90 E-value=1.1e-22 Score=111.72 Aligned_cols=83 Identities=37% Similarity=0.685 Sum_probs=76.7
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred cCC
Q 033181 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 876
No 27
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.90 E-value=1.3e-22 Score=131.76 Aligned_cols=111 Identities=32% Similarity=0.397 Sum_probs=101.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE 80 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~ 80 (125)
|.++++|.+|+..+||..+.|++|.|.++.+ +.+|||+|||..+++++|+.+|++||.|..+.+..+ .
T Consensus 65 f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~-----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~ 132 (261)
T 3sde_A 65 LESRTLAEIAKAELDGTILKSRPLRIRFATH-----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-D 132 (261)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCC-----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-T
T ss_pred ECCHHHHHHHHHHcCCcEECCceeEeeeccc-----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-C
Confidence 7899999999999999999999999999863 468999999999999999999999999999999988 6
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHhCC-ceec---CeEEEEEEccCC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESLNG-VELE---GRAMRVSLAQGR 123 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~~~---g~~i~v~~~~~~ 123 (125)
+|.++|+|||+|.+.++|..|+..+++ ..+. +++|.|.++.+.
T Consensus 133 ~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 133 RGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp TSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 889999999999999999999999954 4554 899999998754
No 28
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.90 E-value=1.7e-22 Score=115.23 Aligned_cols=89 Identities=35% Similarity=0.676 Sum_probs=82.8
Q ss_pred CCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 37 ~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
+....++++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+..++|..++|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 34455678999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 033181 117 VSLAQGRRS 125 (125)
Q Consensus 117 v~~~~~~~~ 125 (125)
|.++.++.+
T Consensus 100 V~~a~~k~d 108 (108)
T 2jrs_A 100 VGHVTERTD 108 (108)
T ss_dssp EECSCSSCC
T ss_pred EEEcccCCC
Confidence 999998864
No 29
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=4.1e-22 Score=112.74 Aligned_cols=85 Identities=20% Similarity=0.415 Sum_probs=80.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|+|..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 91 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEW 91 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 92 a~~~~ 96 (103)
T 2cq0_A 92 AKPST 96 (103)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98764
No 30
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.89 E-value=1.3e-23 Score=124.33 Aligned_cols=117 Identities=27% Similarity=0.494 Sum_probs=82.1
Q ss_pred CCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCC
Q 033181 2 STVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES 81 (125)
Q Consensus 2 ~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~ 81 (125)
++...+..|+..++|....|+. ...+..+ +....+.++|||+|||..+++++|+++|++||.|..+.+..+..+
T Consensus 12 ~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~-----~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 85 (135)
T 2lea_A 12 SGLVPRGSHMASMTGGQQMGRG-SMSYGRP-----PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT 85 (135)
T ss_dssp ------------------------CCSCCS-----CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS
T ss_pred cCCCchhhhhhhccCCCCCCCC-CCCcCCC-----CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC
Confidence 4555678888888887666654 2233322 223446788999999999999999999999999999999888778
Q ss_pred CCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 82 GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 82 ~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
+.++|+|||+|.+.++|+.|+..|+|..|+|+.|+|.++++++
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999999999999998763
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=116.51 Aligned_cols=82 Identities=18% Similarity=0.343 Sum_probs=75.5
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC-CceecCeEEEEEEc
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN-GVELEGRAMRVSLA 120 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~~ 120 (125)
+.+|||+|||.++++++|+++|++|| .|..+.++.++.+|.++|||||+|.+.++|++|+..++ +..++|++|+|.|+
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 35799999999999999999999999 79999999888889999999999999999999999875 56799999999999
Q ss_pred cCCC
Q 033181 121 QGRR 124 (125)
Q Consensus 121 ~~~~ 124 (125)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8874
No 32
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.89 E-value=9.5e-22 Score=113.26 Aligned_cols=86 Identities=37% Similarity=0.658 Sum_probs=80.7
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|+|..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999987889999999999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 91 ~a~~~~ 96 (115)
T 2dgo_A 91 WATRKP 96 (115)
T ss_dssp ESSCCC
T ss_pred EccCCC
Confidence 998763
No 33
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=5.6e-22 Score=110.56 Aligned_cols=84 Identities=35% Similarity=0.556 Sum_probs=79.2
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...++++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999988889999999999999999999999999999999999999
Q ss_pred EccC
Q 033181 119 LAQG 122 (125)
Q Consensus 119 ~~~~ 122 (125)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9875
No 34
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.89 E-value=2.4e-22 Score=112.33 Aligned_cols=83 Identities=22% Similarity=0.521 Sum_probs=78.7
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 45789999999999999999999999999999999888889999999999999999999999999999999999999998
Q ss_pred CCC
Q 033181 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
+++
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 764
No 35
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=2.3e-22 Score=112.15 Aligned_cols=84 Identities=37% Similarity=0.676 Sum_probs=79.6
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.++++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|||..++|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46689999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 033181 121 QGRR 124 (125)
Q Consensus 121 ~~~~ 124 (125)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8774
No 36
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.89 E-value=2.4e-22 Score=109.92 Aligned_cols=82 Identities=33% Similarity=0.571 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.+..+.++.+..++.++|+|||+|.+.++|+.|+..|||..++|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred cc
Q 033181 120 AQ 121 (125)
Q Consensus 120 ~~ 121 (125)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 85
No 37
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.89 E-value=4.9e-22 Score=111.68 Aligned_cols=85 Identities=25% Similarity=0.414 Sum_probs=79.1
Q ss_pred CCCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc
Q 033181 37 PLYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 37 ~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~ 108 (125)
.....+.++|||+|||..+++++|+++|++||.+.. +.+..+..+|.++|+|||+|.+.++|+.|+..|+|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567789999999999999999999999999999 999998888999999999999999999999999999
Q ss_pred eecCeEEEEEEcc
Q 033181 109 ELEGRAMRVSLAQ 121 (125)
Q Consensus 109 ~~~g~~i~v~~~~ 121 (125)
.++|+.|+|.+|+
T Consensus 87 ~~~g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSGNPIKVSFAT 99 (99)
T ss_dssp BSSSSBCEEEECC
T ss_pred EeCCcEEEEEecC
Confidence 9999999999974
No 38
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.89 E-value=6.6e-22 Score=113.96 Aligned_cols=85 Identities=28% Similarity=0.542 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|+.|+..||+..|+|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 101 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQL 101 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
++++.
T Consensus 102 a~~~~ 106 (115)
T 2cpz_A 102 KRSKN 106 (115)
T ss_dssp CCCSC
T ss_pred cCCCC
Confidence 98764
No 39
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=3.7e-22 Score=113.27 Aligned_cols=86 Identities=27% Similarity=0.472 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|++..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 90 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVN 90 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 34567899999999999999999999999999999999887789999999999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.+++
T Consensus 91 ~a~~~~ 96 (105)
T 1x5u_A 91 KASAHN 96 (105)
T ss_dssp ETTTTS
T ss_pred ECCCCC
Confidence 998764
No 40
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.89 E-value=4.7e-22 Score=111.69 Aligned_cols=85 Identities=24% Similarity=0.432 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|+|..+.|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34678999999999999999999999999999999998877899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.+++
T Consensus 85 a~~~~ 89 (99)
T 1whw_A 85 STIKK 89 (99)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98764
No 41
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=7.2e-22 Score=109.94 Aligned_cols=83 Identities=28% Similarity=0.541 Sum_probs=77.8
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34567899999999999999999999999999999999888888899999999999999999999999999999999999
Q ss_pred Ecc
Q 033181 119 LAQ 121 (125)
Q Consensus 119 ~~~ 121 (125)
|++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 42
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.89 E-value=2.9e-22 Score=131.71 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=96.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCC-ceeEEEEeecC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDG 79 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g-~~~~~~~~~~~ 79 (125)
|.++++|.+|+. +||..+.|++|.+.++ ..++|||+|||..+++++|+++|++|| .|..+.+..+.
T Consensus 88 f~~~~~A~~A~~-~~~~~~~g~~i~v~~~------------~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~ 154 (292)
T 2ghp_A 88 FARYDGALAAIT-KTHKVVGQNEIIVSHL------------TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR 154 (292)
T ss_dssp ESSHHHHHHHHT-TTTCEETTEECEEEEC------------CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC---
T ss_pred ECCHHHHHHHHH-hCCcEeCCcEEEEEEC------------CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC
Confidence 789999999995 9999999999999986 356899999999999999999999999 99999988774
Q ss_pred CCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 80 ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 80 ~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
. |.++|+|||+|.+.++|..|+..|+|..++|+.|.|.++.++
T Consensus 155 ~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 155 F-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp -----CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred C-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 3 778999999999999999999999999999999999998865
No 43
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.89 E-value=4.2e-22 Score=113.22 Aligned_cols=85 Identities=31% Similarity=0.497 Sum_probs=80.2
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 45678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 100 a~~~~ 104 (106)
T 1p27_B 100 CFVRG 104 (106)
T ss_dssp SEESS
T ss_pred ecCCC
Confidence 98764
No 44
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=5.9e-22 Score=111.33 Aligned_cols=84 Identities=25% Similarity=0.557 Sum_probs=78.9
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+. +++..++|+.|+|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 4567899999999999999999999999999999999888889999999999999999999999 999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2dgs_A 86 AEPRD 90 (99)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 98764
No 45
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.88 E-value=4.5e-22 Score=113.80 Aligned_cols=86 Identities=26% Similarity=0.460 Sum_probs=80.4
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...++++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 998764
No 46
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=2.8e-22 Score=112.05 Aligned_cols=84 Identities=26% Similarity=0.536 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEE-EEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
.++++|||+|||..+++++|+++|++||.|..+ .+..+..++.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 357899999999999999999999999999999 8988878899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98764
No 47
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=3e-22 Score=113.30 Aligned_cols=87 Identities=28% Similarity=0.515 Sum_probs=80.7
Q ss_pred CCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
+...+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|||..++|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 87 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRV 87 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 33456789999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++++++
T Consensus 88 ~~a~~~~ 94 (103)
T 2dnm_A 88 QVARYGR 94 (103)
T ss_dssp EECSSCC
T ss_pred EECCcCC
Confidence 9998653
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.88 E-value=7.7e-22 Score=113.72 Aligned_cols=81 Identities=32% Similarity=0.604 Sum_probs=74.1
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.++.|||+|||..+++++|+++|++||.|..+.+..+. +.++|||||+|.+.++|+.|+..|+|..|+|+.|+|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999998874 3478999999999999999999999999999999999988
Q ss_pred CCC
Q 033181 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
+++
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 754
No 49
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=9.8e-22 Score=112.51 Aligned_cols=86 Identities=27% Similarity=0.511 Sum_probs=80.5
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC------CceecC
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN------GVELEG 112 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~------~~~~~g 112 (125)
...+.++|||+|||..+++++|+.+|.+||.|..+.+..+..++.++|||||+|.+.++|+.|+..++ +..|+|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 34567899999999999999999999999999999999988889999999999999999999999999 999999
Q ss_pred eEEEEEEccCCC
Q 033181 113 RAMRVSLAQGRR 124 (125)
Q Consensus 113 ~~i~v~~~~~~~ 124 (125)
+.|+|.++.++.
T Consensus 91 ~~l~v~~a~~~~ 102 (111)
T 1x4h_A 91 RQLKVDLAVTRD 102 (111)
T ss_dssp CEEEEECCCCCC
T ss_pred EEEEEEECCCCc
Confidence 999999998764
No 50
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=2.7e-21 Score=109.37 Aligned_cols=84 Identities=24% Similarity=0.565 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++|| |..+.+..+..++.++|||||+|.+.++|+.|+ .|+|..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 345678999999999999999999999997 999999999888999999999999999999999 899999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.+++
T Consensus 89 ~a~~~~ 94 (103)
T 2dng_A 89 IAEGRK 94 (103)
T ss_dssp ECCCCC
T ss_pred EecCCC
Confidence 998764
No 51
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=8.7e-22 Score=112.03 Aligned_cols=86 Identities=24% Similarity=0.474 Sum_probs=80.0
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeec-CCCCCceeEEEEEecCHHHHHHHHHHh-CCceecCeEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYD-GESGRSRGYGFVCYSTKAEMETALESL-NGVELEGRAMR 116 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~-~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~i~ 116 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ ..++.++|+|||+|.+.++|+.|+..| ++..|.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 3456789999999999999999999999999999999887 678899999999999999999999999 99999999999
Q ss_pred EEEccCCC
Q 033181 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++.++.
T Consensus 91 v~~a~~~~ 98 (107)
T 2cph_A 91 LEWADSEV 98 (107)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998764
No 52
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=8.4e-22 Score=110.48 Aligned_cols=87 Identities=22% Similarity=0.342 Sum_probs=79.6
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
.....++|||+|||..+++++|+++|.+||.+..+.+..+..+|.++|+|||+|.+.++|+.|+..|+|..|+|+.|+|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34566899999999999999999999999999877777777889999999999999999999999999999999999999
Q ss_pred EccCCCC
Q 033181 119 LAQGRRS 125 (125)
Q Consensus 119 ~~~~~~~ 125 (125)
++..+.|
T Consensus 91 ~a~~~~s 97 (98)
T 2cqp_A 91 LGSGPSS 97 (98)
T ss_dssp ESSCSSC
T ss_pred EcCCCCC
Confidence 9987654
No 53
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1.7e-21 Score=110.21 Aligned_cols=84 Identities=33% Similarity=0.632 Sum_probs=78.2
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+ ++.++|+|||+|.+.++|+.|+..|||..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVA 88 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3456789999999999999999999999999999999877 78899999999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2d9p_A 89 LAQRKE 94 (103)
T ss_dssp ECSSCC
T ss_pred Eecccc
Confidence 998764
No 54
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=5.4e-22 Score=112.03 Aligned_cols=85 Identities=33% Similarity=0.556 Sum_probs=79.8
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|+|..|+|+.|+|.+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 88 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 88 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEe
Confidence 34678999999999999999999999999999999988878889999999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.+++
T Consensus 89 a~~~~ 93 (102)
T 2cqb_A 89 AKPMR 93 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98764
No 55
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.88 E-value=1.8e-21 Score=110.27 Aligned_cols=84 Identities=26% Similarity=0.489 Sum_probs=78.0
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCC-CCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES-GRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~-~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
+..+.++|||+|||..+++++|+++|.+|| |..+.+..+..+ +.++|||||+|.+.++|+.|+ .|++..|+|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 88 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRV 88 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEE
Confidence 345678999999999999999999999999 999999888776 889999999999999999999 89999999999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.+++
T Consensus 89 ~~a~~~~ 95 (104)
T 1wi8_A 89 DVADQAQ 95 (104)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998774
No 56
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.88 E-value=3e-21 Score=109.47 Aligned_cols=84 Identities=30% Similarity=0.474 Sum_probs=78.1
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecC---eEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG---RAMR 116 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g---~~i~ 116 (125)
..++++|||+|||..+++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|+.|+..|||..+.| +.|+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 3467899999999999999999999999999999999885 78899999999999999999999999999987 9999
Q ss_pred EEEccCCC
Q 033181 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++.+++
T Consensus 91 V~~a~~~~ 98 (105)
T 2dnh_A 91 VKFADTDK 98 (105)
T ss_dssp EEESCSSC
T ss_pred EEECccCc
Confidence 99998764
No 57
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.88 E-value=1.1e-21 Score=109.93 Aligned_cols=84 Identities=26% Similarity=0.462 Sum_probs=77.2
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCC---CCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGE---SGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~---~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
.++++|||+|||..+++++|+++|++||.|..+.+..+.. ++.++|+|||+|.+.++|+.|+..|+|..|+|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 3567899999999999999999999999999999988755 5588999999999999999999999999999999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998764
No 58
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.88 E-value=3.4e-22 Score=111.40 Aligned_cols=81 Identities=21% Similarity=0.427 Sum_probs=74.5
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCc--eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc----eecCeEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGN--VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV----ELEGRAM 115 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~--~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~----~~~g~~i 115 (125)
.-.+|||+|||+.+++++|+++|++||. +..+.+++++.+|.++|||||+|.+.++|+.|+..|||. .|+|++|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 3458999999999999999999999995 668888998889999999999999999999999999996 5899999
Q ss_pred EEEEccC
Q 033181 116 RVSLAQG 122 (125)
Q Consensus 116 ~v~~~~~ 122 (125)
.|.||++
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999975
No 59
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.87 E-value=5.8e-22 Score=116.34 Aligned_cols=86 Identities=34% Similarity=0.579 Sum_probs=80.9
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...++++|||+|||..+++++|+++|++||.|..+.+..+..++..+|+|||+|.+.++|+.|+..|+|..|+|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.+++
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 999875
No 60
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.87 E-value=2.9e-21 Score=114.65 Aligned_cols=86 Identities=28% Similarity=0.520 Sum_probs=80.4
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|+.||.|..+.+..+..++.++|+|||+|.+.++|..|+..|+|..|+|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34556899999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
+++++.
T Consensus 118 ~a~~~~ 123 (139)
T 1u6f_A 118 LAASGH 123 (139)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 998764
No 61
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.87 E-value=1.4e-22 Score=112.09 Aligned_cols=81 Identities=26% Similarity=0.506 Sum_probs=72.3
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCC--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g--~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+|||+|||..+++++|+++|++|| .+..+.+..+..+|.++|||||+|.+.++|+.|+..|||..++|+.|+|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4699999999999999999999999 99999999998899999999999999999999999999999999999999998
Q ss_pred CCC
Q 033181 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
++.
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 763
No 62
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=5.9e-22 Score=111.87 Aligned_cols=85 Identities=38% Similarity=0.656 Sum_probs=79.6
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..||+..|.|+.|+|.+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 88 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQ 88 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 44678999999999999999999999999999999998878888999999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 89 a~~~~ 93 (102)
T 1x5s_A 89 AGKSS 93 (102)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 98763
No 63
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.87 E-value=3.6e-21 Score=109.51 Aligned_cols=83 Identities=39% Similarity=0.580 Sum_probs=77.9
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|.+||.|..+.+..+. +|.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 103 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQ 103 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 44677899999999999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred EccC
Q 033181 119 LAQG 122 (125)
Q Consensus 119 ~~~~ 122 (125)
++.+
T Consensus 104 ~a~s 107 (107)
T 3ulh_A 104 LVTS 107 (107)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9863
No 64
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.87 E-value=1.9e-21 Score=112.51 Aligned_cols=83 Identities=25% Similarity=0.528 Sum_probs=77.4
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+..|||..++|+.|+|.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999887889999999999999999999999999999999999999
Q ss_pred Ecc
Q 033181 119 LAQ 121 (125)
Q Consensus 119 ~~~ 121 (125)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 975
No 65
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.87 E-value=2.6e-21 Score=106.66 Aligned_cols=81 Identities=28% Similarity=0.543 Sum_probs=77.0
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+ .++|..++|+.|+|.++++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 468999999999999999999999999999999998888999999999999999999999 8999999999999999987
Q ss_pred CC
Q 033181 123 RR 124 (125)
Q Consensus 123 ~~ 124 (125)
++
T Consensus 85 ~~ 86 (89)
T 3ucg_A 85 NR 86 (89)
T ss_dssp TS
T ss_pred CC
Confidence 64
No 66
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=2.6e-21 Score=111.11 Aligned_cols=86 Identities=27% Similarity=0.451 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCcee--------EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVV--------GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~--------~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
...+.++|||+|||..+++++|+++|++||.|. .+.+..+..++.++|+|||+|.+.++|+.|+..|+|..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 688888878899999999999999999999999999999
Q ss_pred cCeEEEEEEccCCC
Q 033181 111 EGRAMRVSLAQGRR 124 (125)
Q Consensus 111 ~g~~i~v~~~~~~~ 124 (125)
.|+.|+|.+++++.
T Consensus 91 ~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 91 QGSKLKVSLARKKP 104 (113)
T ss_dssp TTEECEEECSSCCC
T ss_pred CCCEEEEEECCCCC
Confidence 99999999998764
No 67
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.87 E-value=1.3e-21 Score=111.10 Aligned_cols=86 Identities=23% Similarity=0.428 Sum_probs=79.8
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee---cCeEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL---EGRAM 115 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~g~~i 115 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|+.|+..|++..+ .|+.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 345678999999999999999999999999999999998888899999999999999999999999999987 89999
Q ss_pred EEEEccCCC
Q 033181 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
+|.++.+++
T Consensus 89 ~v~~a~~~~ 97 (106)
T 2dgp_A 89 QVKPADSES 97 (106)
T ss_dssp EEEECCCCS
T ss_pred EEEECCccc
Confidence 999998764
No 68
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.87 E-value=2e-21 Score=109.16 Aligned_cols=83 Identities=24% Similarity=0.436 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCcee-EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeE----E
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVV-GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA----M 115 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~-~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~----i 115 (125)
.++++|||+|||..+++++|+++|++||.+. .+.+..++.++.++|||||+|.+.++|+.|+..|||..+.|+. |
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l 86 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRF 86 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeE
Confidence 4568999999999999999999999999999 9999999888999999999999999999999999999999999 9
Q ss_pred EEEEccCC
Q 033181 116 RVSLAQGR 123 (125)
Q Consensus 116 ~v~~~~~~ 123 (125)
+|.|+++.
T Consensus 87 ~v~~a~~~ 94 (99)
T 2div_A 87 KLNYATYS 94 (99)
T ss_dssp CEEETTCC
T ss_pred EEeecCCC
Confidence 99999865
No 69
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.87 E-value=1.7e-21 Score=107.17 Aligned_cols=83 Identities=22% Similarity=0.448 Sum_probs=76.5
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCC-ceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGR-SRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~-~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.+++|||+|||..+++++|+++|++||.+..+.+..+..++. ++|+|||+|.+.++|+.|+..|||..++|+.|+|.++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 357899999999999999999999999999999988766555 7899999999999999999999999999999999999
Q ss_pred cCCC
Q 033181 121 QGRR 124 (125)
Q Consensus 121 ~~~~ 124 (125)
.+.+
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 70
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.87 E-value=3e-21 Score=106.99 Aligned_cols=83 Identities=29% Similarity=0.522 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|||..+++++|+++|++||.|..+.+..+ ++.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999988864 778899999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
++++.
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 98764
No 71
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.87 E-value=3.1e-21 Score=107.57 Aligned_cols=82 Identities=34% Similarity=0.586 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+.. +.++|+|||+|.+.++|+.|+..|+|..+.|+.|+|.+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 45668999999999999999999999999999999998854 88999999999999999999999999999999999999
Q ss_pred ccC
Q 033181 120 AQG 122 (125)
Q Consensus 120 ~~~ 122 (125)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 874
No 72
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.87 E-value=2.3e-22 Score=113.26 Aligned_cols=82 Identities=21% Similarity=0.339 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCc------cCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecC-eE
Q 033181 42 TDFKLFVGNLSW------SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG-RA 114 (125)
Q Consensus 42 ~~~~l~i~~lp~------~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-~~ 114 (125)
.+++|||+|||. .+++++|+++|++||.|..+.++.+..+|.++|||||+|.+.++|+.|+..|||..++| +.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 357899999999 99999999999999999999999998889999999999999999999999999999999 99
Q ss_pred EEEEEccCC
Q 033181 115 MRVSLAQGR 123 (125)
Q Consensus 115 i~v~~~~~~ 123 (125)
|+|.++.++
T Consensus 85 l~V~~a~~~ 93 (100)
T 3ns6_A 85 LFLYTMKDV 93 (100)
T ss_dssp CEEEESHHH
T ss_pred EEEEECchh
Confidence 999999764
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.4e-20 Score=106.36 Aligned_cols=84 Identities=29% Similarity=0.581 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+.. .++|+|||+|.+.++|+.|+..|+|..|+|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 88 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 345678999999999999999999999999999999987743 378999999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cq3_A 89 NATARV 94 (103)
T ss_dssp ECCSSC
T ss_pred EcccCC
Confidence 998764
No 74
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=4.6e-22 Score=112.66 Aligned_cols=84 Identities=39% Similarity=0.706 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34578999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred cCCC
Q 033181 121 QGRR 124 (125)
Q Consensus 121 ~~~~ 124 (125)
.+++
T Consensus 86 ~~~~ 89 (104)
T 1p1t_A 86 ASEK 89 (104)
T ss_dssp TCTT
T ss_pred CCcc
Confidence 8764
No 75
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.86 E-value=8.4e-21 Score=114.67 Aligned_cols=85 Identities=28% Similarity=0.485 Sum_probs=80.0
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.++.+..++.++|||||+|.+.++|+.|+..|++..|+|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 34678999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.+++
T Consensus 116 a~~~~ 120 (156)
T 1h2v_Z 116 DAGFK 120 (156)
T ss_dssp ESCCC
T ss_pred CCCCC
Confidence 98653
No 76
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=3.2e-21 Score=107.81 Aligned_cols=79 Identities=15% Similarity=0.201 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce--ecCeEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE--LEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~~i~v 117 (125)
.+++..|||+|||..+++++|+.+|++||.|..+.+... +|+|||+|.+.++|..|+..+++.. +.|++|.|
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V 91 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFV 91 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEE
Confidence 357789999999999999999999999999999988643 6799999999999999999999875 78999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.||+++.
T Consensus 92 ~~S~~k~ 98 (100)
T 3r27_A 92 NYSTSQK 98 (100)
T ss_dssp EECSCSC
T ss_pred Eeccccc
Confidence 9998863
No 77
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=111.20 Aligned_cols=83 Identities=27% Similarity=0.518 Sum_probs=77.8
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.++++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|||||+|.+.++|+.|+..|+|..++|+.|+|.++
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEC
Confidence 456799999999999999999999999999999999886 8889999999999999999999999999999999999999
Q ss_pred cCCC
Q 033181 121 QGRR 124 (125)
Q Consensus 121 ~~~~ 124 (125)
+++.
T Consensus 84 ~~~~ 87 (116)
T 2fy1_A 84 KKPS 87 (116)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8653
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=5.7e-21 Score=106.75 Aligned_cols=81 Identities=20% Similarity=0.264 Sum_probs=74.6
Q ss_pred CCCcEEEEcCCCccCCHHHHH----HHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 41 ETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~----~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
.+.++|||+|||..+++++|+ ++|++||.|..+.+..+..+ +|||||+|.+.++|+.|+..|||..++|+.|+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~ 83 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKKIL 83 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 456899999999999999999 99999999999999877544 78999999999999999999999999999999
Q ss_pred EEEccCCC
Q 033181 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.+++++.
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99998764
No 79
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=116.61 Aligned_cols=82 Identities=28% Similarity=0.472 Sum_probs=77.0
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCC--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g--~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++|||+|||+.+++++|+++|++|| .|..+.+..+..+|.++|||||+|.+.++|+.|+..|+|..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 357999999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8754
No 80
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=1.6e-20 Score=106.16 Aligned_cols=84 Identities=26% Similarity=0.406 Sum_probs=76.2
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+..+ .+|||||+|.+.++|+.|+..|++..|.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVN 88 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEE
Confidence 3456789999999999999999999999999999999877433 57899999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 89 ~a~~~~ 94 (103)
T 2cqi_A 89 WATTPS 94 (103)
T ss_dssp ECCCTT
T ss_pred ECCCCc
Confidence 998764
No 81
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.86 E-value=2.5e-21 Score=113.16 Aligned_cols=85 Identities=31% Similarity=0.494 Sum_probs=79.5
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...++++|||+|||..+++++|+.+|.+||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|||..|+|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 34567899999999999999999999999999999999887889999999999999999999999999999999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 98 ~a~~~ 102 (126)
T 3ex7_B 98 WCFVR 102 (126)
T ss_dssp ESEES
T ss_pred EecCC
Confidence 99765
No 82
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=103.98 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
....++|||+|||..+++++|+++|++| .+..+.++.+ .+|.++|+|||+|.+.++|+.|+. ++|..|+|+.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 3466899999999999999999999999 9999999988 789999999999999999999999 999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 84 a~~~~ 88 (91)
T 2dgw_A 84 EKSGP 88 (91)
T ss_dssp ESSCC
T ss_pred CCcCC
Confidence 98764
No 83
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=108.91 Aligned_cols=85 Identities=36% Similarity=0.573 Sum_probs=79.5
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||+.+++++|+++|.+||.|..+.+..+..++.++|||||+|.+.++|+.|+.. ++..|+|+.|.|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~ 90 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPK 90 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEE
Confidence 345678999999999999999999999999999999999888899999999999999999999998 9999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 91 ~a~~~~ 96 (105)
T 2dh8_A 91 PCTPRG 96 (105)
T ss_dssp CSCCSS
T ss_pred EccCCC
Confidence 998764
No 84
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=9.6e-21 Score=109.20 Aligned_cols=84 Identities=37% Similarity=0.563 Sum_probs=78.1
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|.+||.|..+.+..+..++.++|||||+|.+.++|+.|+..+++ .|.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 345678999999999999999999999999999999998888899999999999999999999999998 8999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 92 ~a~~~ 96 (116)
T 2cqd_A 92 LAYLG 96 (116)
T ss_dssp ESTTT
T ss_pred EcccC
Confidence 99653
No 85
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.86 E-value=1.2e-20 Score=103.58 Aligned_cols=80 Identities=35% Similarity=0.680 Sum_probs=74.6
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+. +++..++|+.|.|.+
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 3467899999999999999999999999999999999998889999999999999999999997 588899999999987
Q ss_pred c
Q 033181 120 A 120 (125)
Q Consensus 120 ~ 120 (125)
|
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 86
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.86 E-value=1.1e-20 Score=110.13 Aligned_cols=84 Identities=36% Similarity=0.566 Sum_probs=78.9
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...++++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|+|||+|.+.++|+.|+..++|..++|+.|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 44567899999999999999999999999999999999886 88899999999999999999999999999999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
+|.+.
T Consensus 110 ~a~~~ 114 (124)
T 2kt5_A 110 LVASQ 114 (124)
T ss_dssp EECCT
T ss_pred EeCCC
Confidence 99865
No 87
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.6e-21 Score=109.53 Aligned_cols=84 Identities=32% Similarity=0.579 Sum_probs=78.4
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhcc-CCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce-ecCeEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQE-YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE-LEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~-~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~-~~g~~i~v 117 (125)
..++++|||+|||..+++++|+++|++ ||.|..+.+..+. +|.++|||||+|.+.++|+.|+..|++.. ++|+.|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 346789999999999999999999999 9999999999987 89999999999999999999999999999 99999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.++.
T Consensus 85 ~~a~~~~ 91 (104)
T 2dhg_A 85 SVAIPKA 91 (104)
T ss_dssp CBCCCCC
T ss_pred EEccCCC
Confidence 9997653
No 88
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.5e-20 Score=104.72 Aligned_cols=85 Identities=24% Similarity=0.441 Sum_probs=78.0
Q ss_pred CCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|.+||.|..+.+..+..++.++|||||+|.+.++|+.|+. ++..|+|+.|.|
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v 87 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDC 87 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEE
Confidence 334567889999999999999999999999999999999998889999999999999999999999 578999999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.++.
T Consensus 88 ~~a~~~~ 94 (103)
T 2cqg_A 88 KLPNSKQ 94 (103)
T ss_dssp ECCCTTC
T ss_pred EecCCCC
Confidence 9998764
No 89
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.86 E-value=2.7e-21 Score=107.81 Aligned_cols=82 Identities=21% Similarity=0.330 Sum_probs=75.0
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
++.++|||+|||..+++++|+++|.+||.+..+.+..+..++.++|+|||+|.+.++|+.|+..||+..|+|+.|+|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 45689999999999999999999999999988888887788999999999999999999999999999999999999998
Q ss_pred cC
Q 033181 121 QG 122 (125)
Q Consensus 121 ~~ 122 (125)
.+
T Consensus 93 ~s 94 (95)
T 2ek1_A 93 SS 94 (95)
T ss_dssp C-
T ss_pred cC
Confidence 64
No 90
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.86 E-value=9e-22 Score=110.81 Aligned_cols=84 Identities=27% Similarity=0.497 Sum_probs=75.1
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecC-CCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDG-ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~-~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
.....++|||+|||..+++++|+++|++|| |..+.+..+. .+|.++|+|||+|.+.++|+.|+ .++|..++|+.|+|
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V 92 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRV 92 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEE
Confidence 345678999999999999999999999999 9999998886 58899999999999999999999 89999999999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.+++++.
T Consensus 93 ~~a~~~~ 99 (100)
T 2j76_E 93 DVADQAQ 99 (100)
T ss_dssp EECCCSC
T ss_pred EeccCCC
Confidence 9999875
No 91
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.3e-20 Score=107.24 Aligned_cols=83 Identities=33% Similarity=0.464 Sum_probs=77.0
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|||..+++++|+++|.+||.|..+.+..+. ++.++|+|||+|.+.++|+.|+..|++..|+|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 90 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKM 90 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEE
Confidence 3457899999999999999999999999999999998885 588999999999999999999999999999999999999
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
++..
T Consensus 91 a~~~ 94 (114)
T 2do0_A 91 DERA 94 (114)
T ss_dssp CSCC
T ss_pred cccC
Confidence 8743
No 92
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.1e-20 Score=106.64 Aligned_cols=83 Identities=22% Similarity=0.451 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+.. ++.++++|||+|.+.++|+.|+..||+..|.|+.|+|.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 94 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN---RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVE 94 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC---SSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE---CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 345678999999999999999999999999999998854 35578999999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++++++
T Consensus 95 ~a~~~~ 100 (109)
T 1x4a_A 95 FPRSGR 100 (109)
T ss_dssp CCCCCC
T ss_pred EcccCC
Confidence 998764
No 93
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.86 E-value=6.8e-21 Score=108.76 Aligned_cols=84 Identities=33% Similarity=0.610 Sum_probs=75.6
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|+.|+..+ +..++|+.|.|.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~ 100 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKV 100 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEE
Confidence 346689999999999999999999999999999999998888999999999999999999999976 5889999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 101 a~~~~ 105 (109)
T 2rs2_A 101 AFPRR 105 (109)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 98774
No 94
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.2e-21 Score=108.78 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceecCeEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~i~v 117 (125)
+.++++|||+|||+.+++++|+++|++||.|..+.+..+ +|||||+|.+.++|+.|+..+++ ..|.|++|+|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V 86 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 86 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 346789999999999999999999999999999998754 68999999999999999998874 7899999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.|++++.
T Consensus 87 ~~A~~~~ 93 (105)
T 1sjq_A 87 QFSNHKE 93 (105)
T ss_dssp CCCSSSS
T ss_pred EEcCCCC
Confidence 9998764
No 95
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.2e-20 Score=106.69 Aligned_cols=84 Identities=24% Similarity=0.466 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee--------c
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL--------E 111 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~--------~ 111 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+. ++.++|||||+|.+.++|+.|+..|||..+ .
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 4466899999999999999999999999999999999986 889999999999999999999999999998 5
Q ss_pred CeEEEEEEccCCC
Q 033181 112 GRAMRVSLAQGRR 124 (125)
Q Consensus 112 g~~i~v~~~~~~~ 124 (125)
+++|.|.|+.|+.
T Consensus 101 ~~~l~v~~a~p~~ 113 (114)
T 1x5o_A 101 TEPLLCKFSGPSS 113 (114)
T ss_dssp SSCBEEEECCCSC
T ss_pred CCceeEEccCCCC
Confidence 7889999999764
No 96
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=107.99 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=76.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHH---HHhccCCceeEEEEeecCCC---CCceeEEEEEecCHHHHHHHHHHhCCceecCe
Q 033181 40 AETDFKLFVGNLSWSVTTESLT---QAFQEYGNVVGARVLYDGES---GRSRGYGFVCYSTKAEMETALESLNGVELEGR 113 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~---~~f~~~g~~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 113 (125)
....++|||+|||+.+++++|+ ++|++||.|..+.+..+..+ +.++|+|||+|.+.++|+.|+..|||..|+|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456789999999999999999 99999999999999877553 35569999999999999999999999999999
Q ss_pred EEEEEEccCCC
Q 033181 114 AMRVSLAQGRR 124 (125)
Q Consensus 114 ~i~v~~~~~~~ 124 (125)
.|+|.++.++.
T Consensus 92 ~l~V~~a~~k~ 102 (111)
T 2cpi_A 92 TLKASLGTTKY 102 (111)
T ss_dssp EEEEESCCCCS
T ss_pred EEEEEeccccc
Confidence 99999998874
No 97
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=4e-20 Score=104.07 Aligned_cols=80 Identities=14% Similarity=0.170 Sum_probs=71.4
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC--CceecCeEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN--GVELEGRAMR 116 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~i~ 116 (125)
...++++|||+|||+.+++++|+.+|++||.|..+.+..+ +|+|||+|.+.++|+.|+..++ +..+.|++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 3457789999999999999999999999999999987643 6899999999999999999874 6789999999
Q ss_pred EEEccCCC
Q 033181 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.|++++.
T Consensus 85 V~~a~~~~ 92 (101)
T 2cq1_A 85 IQYSNHKE 92 (101)
T ss_dssp EEECSCSS
T ss_pred EEEcCccc
Confidence 99998763
No 98
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.7e-21 Score=112.03 Aligned_cols=80 Identities=25% Similarity=0.389 Sum_probs=75.9
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|||||+|.+.++|+.|+ .|+|..|+|+.|+|.++.+
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 478999999999999999999999999999999988888999999999999999999999 8999999999999999875
Q ss_pred C
Q 033181 123 R 123 (125)
Q Consensus 123 ~ 123 (125)
+
T Consensus 104 ~ 104 (114)
T 2cq4_A 104 E 104 (114)
T ss_dssp H
T ss_pred C
Confidence 4
No 99
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-22 Score=107.73 Aligned_cols=82 Identities=21% Similarity=0.432 Sum_probs=76.5
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.++++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|||..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999988888999999999999999999999999999999999988776
Q ss_pred cC
Q 033181 121 QG 122 (125)
Q Consensus 121 ~~ 122 (125)
++
T Consensus 83 ~s 84 (85)
T 1x4e_A 83 SS 84 (85)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 100
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=6.9e-21 Score=107.20 Aligned_cols=79 Identities=18% Similarity=0.241 Sum_probs=71.0
Q ss_pred CCCCcEEEEcCCCc-cCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc--eecCeEEE
Q 033181 40 AETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV--ELEGRAMR 116 (125)
Q Consensus 40 ~~~~~~l~i~~lp~-~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~--~~~g~~i~ 116 (125)
..+++.|||+|||+ .+++++|+.+|++||.|..+.+..+ +++|||+|.+.++|+.|+..|++. .|.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 85 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVR 85 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEE
Confidence 34678999999999 9999999999999999999988754 479999999999999999999864 59999999
Q ss_pred EEEccCCC
Q 033181 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++++++
T Consensus 86 V~~a~~~~ 93 (102)
T 1x4d_A 86 VHLSQKYK 93 (102)
T ss_dssp EEEECCCT
T ss_pred EEECCCCC
Confidence 99998653
No 101
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=107.74 Aligned_cols=83 Identities=28% Similarity=0.580 Sum_probs=76.1
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+. +.++|+|||+|.+.++|+.|+..|+|..++|+.|+|.+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 103 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNN 103 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999988773 34789999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 104 a~~~~ 108 (109)
T 2err_A 104 ATARV 108 (109)
T ss_dssp CCCSC
T ss_pred CCCCc
Confidence 98863
No 102
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.8e-21 Score=109.84 Aligned_cols=82 Identities=35% Similarity=0.606 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
+.++|||+|||..+++++|+++|.+||.|..+.+..+..++.++|||||+|.+.++|+.|+.. ++..|+|+.|+|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 457999999999999999999999999999999999888899999999999999999999997 9999999999999998
Q ss_pred CCC
Q 033181 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 774
No 103
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.85 E-value=2.4e-20 Score=108.66 Aligned_cols=82 Identities=21% Similarity=0.499 Sum_probs=77.1
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|||||+|.+.++|+.|+ .++|..|+|+.|+|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3579999999999999999999999999999999998888999999999999999999999 799999999999999998
Q ss_pred CCC
Q 033181 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
+.+
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 104
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.85 E-value=2.4e-21 Score=114.00 Aligned_cols=84 Identities=25% Similarity=0.456 Sum_probs=78.3
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeE--EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc----eecCe
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV----ELEGR 113 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~--~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~----~~~g~ 113 (125)
..+.++|||+|||+.+++++|+++|.+||.|.. +.++.+..+|.++|||||+|.+. +|..|+..|+|. .++|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 456689999999999999999999999999976 89999988999999999999999 999999999999 99999
Q ss_pred EEEEEEccCCC
Q 033181 114 AMRVSLAQGRR 124 (125)
Q Consensus 114 ~i~v~~~~~~~ 124 (125)
.|+|.++.+++
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998763
No 105
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=110.32 Aligned_cols=82 Identities=33% Similarity=0.557 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+.++|||+|||..+++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..|+|..|+|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999999888889999999999999999999999999999999999998
Q ss_pred Ec
Q 033181 119 LA 120 (125)
Q Consensus 119 ~~ 120 (125)
+|
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 86
No 106
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=107.74 Aligned_cols=84 Identities=20% Similarity=0.347 Sum_probs=76.9
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCc-eeEEEEe-ecCCCCCceeEEEEEecCHHHHHHHHHHhC--CceecCeEEE
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGN-VVGARVL-YDGESGRSRGYGFVCYSTKAEMETALESLN--GVELEGRAMR 116 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~-~~~~~~~-~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~i~ 116 (125)
.+.++|||+|||..+++++|+++|.+||. |..+.+. .+..+|.++|||||+|.+.++|+.|+..|+ +..++|+.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 35689999999999999999999999998 9999887 677778899999999999999999999996 5899999999
Q ss_pred EEEccCCC
Q 033181 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++.++.
T Consensus 86 V~~a~~~~ 93 (109)
T 2dis_A 86 VDWAEPEI 93 (109)
T ss_dssp EEESCSSC
T ss_pred EEEcCCCC
Confidence 99998764
No 107
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=7.8e-20 Score=103.09 Aligned_cols=84 Identities=29% Similarity=0.497 Sum_probs=75.1
Q ss_pred CCCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
....+.++|||+|||..+++++|+++|+.|+ .+.++.+..++.++|||||+|.+.++|+.|+..|++..|.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 86 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTL 86 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3455778999999999999999999999874 5566777778899999999999999999999999999999999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.+++++.
T Consensus 87 ~~a~~~~ 93 (102)
T 2fc8_A 87 DWAKPKG 93 (102)
T ss_dssp EECCCCC
T ss_pred EEecCCC
Confidence 9999874
No 108
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.4e-21 Score=107.52 Aligned_cols=80 Identities=10% Similarity=0.206 Sum_probs=74.2
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.++|||+|||.++++++|+.+|++||.|..+.++.+.. |.++|+|||+|.+.++|+.|+. +++..++|+.|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEc
Confidence 4567899999999999999999999999999999998866 8899999999999999999999 8999999999999986
Q ss_pred cC
Q 033181 121 QG 122 (125)
Q Consensus 121 ~~ 122 (125)
..
T Consensus 87 ~~ 88 (103)
T 1s79_A 87 DD 88 (103)
T ss_dssp HH
T ss_pred hH
Confidence 53
No 109
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.84 E-value=2e-20 Score=109.35 Aligned_cols=82 Identities=16% Similarity=0.340 Sum_probs=73.3
Q ss_pred CCCCcEEEEcCCCccCCHHHHH----HHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~----~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i 115 (125)
..++++|||+|||+.+++++|+ .+|++||.|..+.+. .++.++|||||+|.+.++|..|+..|||..|.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4567899999999999998865 689999999988764 357789999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 033181 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
+|.|++++.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999998763
No 110
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.84 E-value=1.7e-20 Score=106.48 Aligned_cols=82 Identities=22% Similarity=0.394 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCccC------CHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCe
Q 033181 40 AETDFKLFVGNLSWSV------TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR 113 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~------~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 113 (125)
...+++|||+|||..+ ++++|+.+|++||.|..+.++ ..+|.++|+|||+|.+.++|+.|+..|||..++|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 3456899999999999 679999999999999999887 36788999999999999999999999999999998
Q ss_pred -EEEEEEccCC
Q 033181 114 -AMRVSLAQGR 123 (125)
Q Consensus 114 -~i~v~~~~~~ 123 (125)
.|+|.++...
T Consensus 90 ~~l~V~~a~~~ 100 (105)
T 2nlw_A 90 HTFRVNLFTDF 100 (105)
T ss_dssp CEEEEECSCCC
T ss_pred ceEEEEEcchH
Confidence 9999998754
No 111
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.84 E-value=6.6e-20 Score=102.60 Aligned_cols=79 Identities=20% Similarity=0.424 Sum_probs=71.4
Q ss_pred CCCCCCcEEEEcCCCc-cCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 38 LYAETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~-~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
...+++++|||+|||. .+++++|+++|++||.|..+.+. +|+|||+|.+.++|+.|+..++|..++|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455778999999998 99999999999999999998873 67999999999999999999999999999999
Q ss_pred EEEccCCC
Q 033181 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.+++++.
T Consensus 89 V~~a~~~~ 96 (97)
T 2xnq_A 89 LEVSSSNA 96 (97)
T ss_dssp EEECCCCC
T ss_pred EEecCCCC
Confidence 99998763
No 112
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=6.1e-20 Score=102.69 Aligned_cols=78 Identities=19% Similarity=0.422 Sum_probs=71.9
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec--CeEEEEE
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE--GRAMRVS 118 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~--g~~i~v~ 118 (125)
.++++|||+|||..+++++|+++|++||.|..+.+... +|+|||+|.+.++|+.|+..||+..+. |+.|+|.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~ 88 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVD 88 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEE
Confidence 45678999999999999999999999999999887643 679999999999999999999999999 9999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++++++
T Consensus 89 ~a~~~~ 94 (97)
T 1why_A 89 FAKSGP 94 (97)
T ss_dssp ECCCCC
T ss_pred ECCCCC
Confidence 999875
No 113
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=1e-20 Score=105.86 Aligned_cols=82 Identities=22% Similarity=0.442 Sum_probs=74.4
Q ss_pred CCCCcEEEEcCCCccCCHHHHH----HHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~----~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i 115 (125)
.+++++|||+|||..+++++|+ ++|++||.+..+.+.. +|.++|+|||+|.+.++|+.|+..|+|..++|+.|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 4567899999999999999999 9999999999988763 46678999999999999999999999999999999
Q ss_pred EEEEccCCC
Q 033181 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
+|.++.++.
T Consensus 82 ~v~~a~~~~ 90 (97)
T 1nu4_A 82 RIQYAKTDS 90 (97)
T ss_dssp EEEECSSCC
T ss_pred EEEEccCCC
Confidence 999999874
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=107.20 Aligned_cols=79 Identities=14% Similarity=0.227 Sum_probs=71.7
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceecCeEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~i~v 117 (125)
..++++|||+|||+.+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..+++ ..+.|++|+|
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V 101 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYI 101 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEE
Confidence 456789999999999999999999999999999988754 68999999999999999999885 6799999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.|++++.
T Consensus 102 ~~a~~k~ 108 (119)
T 2ad9_A 102 QFSNHKE 108 (119)
T ss_dssp EECSSSS
T ss_pred EEccCCC
Confidence 9998763
No 115
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=4.9e-20 Score=101.75 Aligned_cols=77 Identities=29% Similarity=0.575 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+. +++|||+|.+.++|+.|+..+++..++|+.|+|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 76 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEA 76 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEE
Confidence 4567899999999999999999999999999999886 46999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 77 a~~~~ 81 (90)
T 2dnq_A 77 SKNKS 81 (90)
T ss_dssp SSCCC
T ss_pred CCCCC
Confidence 98764
No 116
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=7.9e-20 Score=104.14 Aligned_cols=78 Identities=26% Similarity=0.360 Sum_probs=72.1
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecC-----eE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG-----RA 114 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-----~~ 114 (125)
....++|||+|||..+++++|+++|.+||.|..+.+..+ |+|||+|.+.++|+.|+..|||..|.| +.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~ 84 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 84 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceE
Confidence 456789999999999999999999999999999988754 799999999999999999999999999 99
Q ss_pred EEEEEccCCC
Q 033181 115 MRVSLAQGRR 124 (125)
Q Consensus 115 i~v~~~~~~~ 124 (125)
|+|.++.++.
T Consensus 85 i~V~~a~~~~ 94 (108)
T 1x4c_A 85 IRVKVDGPRS 94 (108)
T ss_dssp EEEEESSCCS
T ss_pred EEEEeCCCCC
Confidence 9999998763
No 117
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=9.2e-20 Score=102.66 Aligned_cols=81 Identities=33% Similarity=0.565 Sum_probs=73.0
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.| .+... .++.++|+|||+|.+.++|+.|+..|++..|.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 4567899999999999999999999999987 34444 6788899999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.+++
T Consensus 88 a~~~~ 92 (101)
T 2fc9_A 88 QGPRG 92 (101)
T ss_dssp CSSCC
T ss_pred cCCCC
Confidence 98764
No 118
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.84 E-value=5.6e-21 Score=102.16 Aligned_cols=75 Identities=31% Similarity=0.594 Sum_probs=71.1
Q ss_pred EEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
+|||+|||+.+++++|+++|++||.+..+.+..++.+|.++|+|||+|.+.++|+.|+. ++|..++|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999998887789999999999999999999998 9999999999999875
No 119
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=4.5e-20 Score=103.59 Aligned_cols=79 Identities=30% Similarity=0.510 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEE
Confidence 456789999999999999999999999999999988743 67999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 98764
No 120
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=3.8e-20 Score=104.71 Aligned_cols=79 Identities=14% Similarity=0.202 Sum_probs=70.6
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc--eecCeEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV--ELEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~--~~~g~~i~v 117 (125)
..++++|||+|||+.+++++|+++|++||.|..+.+... +|+|||+|.+.++|..|+..+++. .+.|++|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEE
Confidence 456789999999999999999999999999999887643 689999999999999999988764 589999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.|++++.
T Consensus 86 ~~a~~~~ 92 (104)
T 1wex_A 86 NYSTSKR 92 (104)
T ss_dssp EECSSSS
T ss_pred EEccCcc
Confidence 9998763
No 121
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.84 E-value=3.8e-20 Score=107.06 Aligned_cols=81 Identities=21% Similarity=0.388 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCc---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGN---VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~---~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
....++|||+|||+.+++++|+++|+.||. |..+.+..+.. |.++|+|||+|.+.++|+.|+. +++..|+|+.|.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEE
Confidence 456789999999999999999999999998 88999988855 8999999999999999999999 999999999999
Q ss_pred EEEccC
Q 033181 117 VSLAQG 122 (125)
Q Consensus 117 v~~~~~ 122 (125)
|.++.+
T Consensus 92 V~~a~~ 97 (118)
T 2db1_A 92 VFKSHR 97 (118)
T ss_dssp EEEECH
T ss_pred EEECCH
Confidence 998764
No 122
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.83 E-value=5.4e-20 Score=104.84 Aligned_cols=78 Identities=19% Similarity=0.405 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...++++|||+|||..+++++|+++|++||.|..+.+. +|+|||+|.+.++|+.|+..|+|..++|+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34567899999999999999999999999999999886 5799999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++++++
T Consensus 99 ~a~~~~ 104 (108)
T 2jvo_A 99 YSKLPA 104 (108)
T ss_dssp SCSCCC
T ss_pred EecCCC
Confidence 998764
No 123
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.5e-19 Score=100.21 Aligned_cols=77 Identities=31% Similarity=0.553 Sum_probs=71.1
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+.. ++|||+|.+.++|+.|+..|||..+.|+.|+|.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 45678999999999999999999999999999998863 3999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 98764
No 124
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.83 E-value=2.6e-21 Score=106.91 Aligned_cols=79 Identities=30% Similarity=0.686 Sum_probs=73.1
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.+ |..|+..+||..++|+.|+|.+|.++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 47999999999999999999999999999999988888999999999999999 99999999999999999999999875
No 125
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=103.51 Aligned_cols=80 Identities=23% Similarity=0.478 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+ ..++.++|+|||+|.+.++|+.|+..++|..++|+.|+|.+
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 4467899999999999999999999999988765 25678899999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 88 a~~~~ 92 (96)
T 1fjc_A 88 TGEKG 92 (96)
T ss_dssp CSSSC
T ss_pred cCCCC
Confidence 98764
No 126
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.1e-21 Score=110.54 Aligned_cols=84 Identities=19% Similarity=0.327 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
.....++|||+|||+.+++++|+++|.+||.|..+.++....+|.++|||||+|.+.++|+.|+. +|+..|+|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34566899999999999999999999999999875555555789999999999999999999999 99999999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98753
No 127
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=3.9e-20 Score=100.40 Aligned_cols=74 Identities=19% Similarity=0.237 Sum_probs=69.1
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+.-|||+||++.+++++|+++|.+||+|..+.+.. ++|||||+|.+.++|.+|++.||+..++|+.|+|.+|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 456799999999999999999999999999998864 48999999999999999999999999999999999985
No 128
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.83 E-value=4.9e-20 Score=105.31 Aligned_cols=94 Identities=28% Similarity=0.487 Sum_probs=78.6
Q ss_pred cCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCcc-CCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHH
Q 033181 20 LGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEM 98 (125)
Q Consensus 20 ~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~-~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a 98 (125)
.|.++.+..+...... .....+++|||+|||.. +++++|+++|++||.|..+.+ ++|+|||+|.+.++|
T Consensus 6 ~g~~~~~~~s~~~~~~--~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 6 SGMSLKLQASNVTNKN--DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHA 75 (110)
T ss_dssp CSCCCCCCCCCSCCSC--CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHH
T ss_pred CCcccccccCCCCCCC--CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHH
Confidence 4556666655443222 23345689999999999 999999999999999999887 367999999999999
Q ss_pred HHHHHHhCCceecCeEEEEEEccCC
Q 033181 99 ETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 99 ~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
+.|+..|+|..++|+.|+|.++.++
T Consensus 76 ~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 76 RAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp HHHHHHHTTCEETTEECCEEESCCC
T ss_pred HHHHHHcCCCEECCeEEEEEECCCC
Confidence 9999999999999999999999854
No 129
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.8e-20 Score=103.52 Aligned_cols=82 Identities=21% Similarity=0.257 Sum_probs=74.8
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeE-EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG-ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~-~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
....++|||+|||+.+++++|+++|.+||.+.. +.+..+ .+|.++|+|||+|.+.++|+.|+.. ++..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEE
Confidence 456789999999999999999999999999987 777777 7889999999999999999999997 9999999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 90 ~~~~~ 94 (104)
T 1wg5_A 90 KSSRA 94 (104)
T ss_dssp EECTT
T ss_pred ECCHH
Confidence 88754
No 130
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-19 Score=99.03 Aligned_cols=76 Identities=25% Similarity=0.428 Sum_probs=70.1
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh-CCceecCeEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL-NGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~i~v~ 118 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+ +|+|||+|.+.++|+.|+..| +|..++|+.|+|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEE
Confidence 456689999999999999999999999999999988754 689999999999999999999 9999999999999
Q ss_pred Ecc
Q 033181 119 LAQ 121 (125)
Q Consensus 119 ~~~ 121 (125)
|++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 985
No 131
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=106.52 Aligned_cols=82 Identities=17% Similarity=0.234 Sum_probs=75.3
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCce-eEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNV-VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~-~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
..+.++|||+|||..+++++|+++|++||.+ ..+.++.+. +|.++|||||+|.+.++|+.|+.. ++..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 3456889999999999999999999999999 888888886 899999999999999999999997 9999999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 90 ~a~~~ 94 (114)
T 2cpy_A 90 VVTLE 94 (114)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98754
No 132
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.83 E-value=2.7e-20 Score=109.89 Aligned_cols=81 Identities=21% Similarity=0.389 Sum_probs=75.2
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCc---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGN---VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~---~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
....++|||+|||+++++++|+++|++||. +..+.++.+.. |.++|+|||+|.+.++|+.|+. +++..|+|+.|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 456789999999999999999999999999 88899998865 9999999999999999999999 999999999999
Q ss_pred EEEccC
Q 033181 117 VSLAQG 122 (125)
Q Consensus 117 v~~~~~ 122 (125)
|.++.+
T Consensus 119 V~~a~~ 124 (136)
T 2hgl_A 119 VFKSHR 124 (136)
T ss_dssp EEECCH
T ss_pred EEECCh
Confidence 999864
No 133
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.5e-21 Score=109.46 Aligned_cols=85 Identities=26% Similarity=0.450 Sum_probs=72.6
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|||..+++++|+++|.+||.|..+.+.....++.++|||||+|.+.++|+.|+..|+|..++|+.|+|.+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 34678999999999999999999999999884332222222677899999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.+++
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98764
No 134
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.83 E-value=3.4e-20 Score=106.71 Aligned_cols=81 Identities=25% Similarity=0.450 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|||..+++++|+.+|++||.|..+.+..+ +..+|+|||+|.+.++|..|+..|||..++|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 346789999999999999999999999999999988754 44589999999999999999999999999999999999
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.++
T Consensus 82 a~~~ 85 (115)
T 3lqv_A 82 YNAN 85 (115)
T ss_dssp CCHH
T ss_pred ecCC
Confidence 9864
No 135
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.83 E-value=8.1e-20 Score=102.20 Aligned_cols=81 Identities=30% Similarity=0.490 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
....+++|||+|||..+++++|+++|++||.|. +.+... .++|||||+|.+.++|+.|+..|||..++|+.|+|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 345678999999999999999999999999986 455433 467899999999999999999999999999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++++++
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 999875
No 136
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=9.1e-20 Score=104.02 Aligned_cols=79 Identities=24% Similarity=0.537 Sum_probs=72.9
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
....++|||+|||..+++++|+.+|++||.|..+.+..+ +|+|||+|.+.++|+.|+..|+|..|+|+.|+|.|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 95 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYW 95 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEe
Confidence 345689999999999999999999999999999988755 67999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
++++.
T Consensus 96 a~~~~ 100 (109)
T 1x4g_A 96 GKESP 100 (109)
T ss_dssp CCCCC
T ss_pred cCCCC
Confidence 98764
No 137
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.83 E-value=5.4e-20 Score=103.60 Aligned_cols=77 Identities=21% Similarity=0.419 Sum_probs=71.2
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
..+++|||+|||..+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|..|+..|+|..++|+.|+|.|+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP------EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEec
Confidence 3468999999999999999999999999999998872 3689999999999999999999999999999999999
Q ss_pred cCC
Q 033181 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
+++
T Consensus 99 ~~~ 101 (101)
T 2la4_A 99 KER 101 (101)
T ss_dssp CCC
T ss_pred cCC
Confidence 875
No 138
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-20 Score=101.21 Aligned_cols=76 Identities=34% Similarity=0.647 Sum_probs=72.1
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
++|||+|||..+++++|+++|++||.+..+.+..+..+|.++|+|||+|.+.++|+.|+..++ ..++|+.|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 369999999999999999999999999999999887889999999999999999999999999 9999999999986
No 139
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=3.1e-20 Score=105.96 Aligned_cols=79 Identities=15% Similarity=0.280 Sum_probs=70.8
Q ss_pred CCCCcEEEEcCCCcc-CCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC--ceecCeEEE
Q 033181 40 AETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG--VELEGRAMR 116 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~-~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~i~ 116 (125)
..+++.|||+|||++ +++++|+.+|++||.|..+.+... +|+|||+|.+.++|+.|+..|++ ..|.|++|+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 95 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM------KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVK 95 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 457889999999998 999999999999999999988633 68999999999999999998865 569999999
Q ss_pred EEEccCCC
Q 033181 117 VSLAQGRR 124 (125)
Q Consensus 117 v~~~~~~~ 124 (125)
|.++++++
T Consensus 96 V~~a~~~~ 103 (112)
T 1x4f_A 96 VDLSEKYK 103 (112)
T ss_dssp EEEECSCS
T ss_pred EEECcccc
Confidence 99998764
No 140
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.82 E-value=3.3e-19 Score=108.12 Aligned_cols=82 Identities=30% Similarity=0.548 Sum_probs=77.8
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++|||+|||..+++++|+++|++||.+..+.+..+..+|.++|+|||+|.+.++|+.|+..++|..++|+.|+|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 35789999999999999999999999999999999987789999999999999999999999999999999999999988
Q ss_pred CC
Q 033181 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
+.
T Consensus 81 ~~ 82 (167)
T 1fxl_A 81 PS 82 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 141
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6e-19 Score=98.97 Aligned_cols=79 Identities=29% Similarity=0.460 Sum_probs=71.3
Q ss_pred CCCCCCcEEEEcCCCccCCHHHHHHHhccC--CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEE
Q 033181 38 LYAETDFKLFVGNLSWSVTTESLTQAFQEY--GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 38 ~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~--g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i 115 (125)
....+.++|||+|||..+++++|+++|++| |.|..+.+. +|+|||+|.+.++|+.|+..|||..|+|+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGSPI 81 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTEEE
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 344567899999999999999999999999 888887653 5699999999999999999999999999999
Q ss_pred EEEEccCCC
Q 033181 116 RVSLAQGRR 124 (125)
Q Consensus 116 ~v~~~~~~~ 124 (125)
+|.+++++.
T Consensus 82 ~v~~a~~~~ 90 (99)
T 2cpd_A 82 EVTLAKPVD 90 (99)
T ss_dssp EEECCCCCC
T ss_pred EEEECCCCC
Confidence 999998763
No 142
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=9.9e-20 Score=104.02 Aligned_cols=78 Identities=19% Similarity=0.262 Sum_probs=70.4
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
..+.|||+|||+.+++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|+.|+..|||..++|+.|+|.++
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a 102 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERD 102 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEES
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 568999999999999999999999999 899887742 246899999999999999999999999999999999998
Q ss_pred cCC
Q 033181 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
..+
T Consensus 103 ~~~ 105 (111)
T 2jvr_A 103 DNP 105 (111)
T ss_dssp CC-
T ss_pred CCC
Confidence 754
No 143
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.82 E-value=4.3e-21 Score=108.16 Aligned_cols=83 Identities=29% Similarity=0.517 Sum_probs=73.7
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.+.. .++.+..+|.++|||||+|.+.++|+.|+. ++|..+.|+.|+|.+
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~ 91 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEK 91 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEE
Confidence 346789999999999999999999999998776 444444567789999999999999999999 999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 92 a~~~~ 96 (101)
T 1fj7_A 92 PKGRD 96 (101)
T ss_dssp CSCCC
T ss_pred cCCCC
Confidence 98774
No 144
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=9.1e-20 Score=102.89 Aligned_cols=81 Identities=15% Similarity=0.230 Sum_probs=73.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
....++|||+|||+.+++++|+++|++||. ..+.++.+. ++.++|+|||+|.+.++|++|+. +++..|+|+.|.|..
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 345689999999999999999999999994 588898886 89999999999999999999995 799999999999998
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.+.
T Consensus 89 ~~~~ 92 (102)
T 1wez_A 89 NSTA 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8765
No 145
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=99.02 Aligned_cols=77 Identities=31% Similarity=0.580 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+.. ++|||+|.+.++|+.|+..|+|..++|+.|+|.+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 77 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVEL 77 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 34668899999999999999999999999999998863 3999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.+++
T Consensus 78 a~~~~ 82 (90)
T 2dnp_A 78 STKGQ 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 98764
No 146
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.82 E-value=3.9e-19 Score=112.24 Aligned_cols=84 Identities=30% Similarity=0.436 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||+++++++|+++|++||.|..+.+..+..++.++|+|||+|.+.++|+.|+..+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34668999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+...
T Consensus 92 ~~~~ 95 (213)
T 4f02_A 92 SQRD 95 (213)
T ss_dssp CCCC
T ss_pred cccc
Confidence 8754
No 147
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=103.41 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=71.7
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||+|||+.+++++|+++|++| .|..+.+..+.. |.++|+|||+|.+.++|++|+ .+++..|+|+.|.|..+.
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 45799999999999999999999999 899999988854 889999999999999999999 599999999999998876
Q ss_pred C
Q 033181 122 G 122 (125)
Q Consensus 122 ~ 122 (125)
+
T Consensus 92 ~ 92 (109)
T 2dnn_A 92 E 92 (109)
T ss_dssp H
T ss_pred c
Confidence 4
No 148
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.82 E-value=2.6e-19 Score=108.83 Aligned_cols=83 Identities=27% Similarity=0.486 Sum_probs=78.3
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+..++|..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56789999999999999999999999999999999887889999999999999999999999999999999999999988
Q ss_pred CCC
Q 033181 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
++.
T Consensus 82 ~~~ 84 (168)
T 1b7f_A 82 PGG 84 (168)
T ss_dssp CCS
T ss_pred CCc
Confidence 653
No 149
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.81 E-value=7.2e-20 Score=116.78 Aligned_cols=81 Identities=26% Similarity=0.509 Sum_probs=76.2
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCC--ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYG--NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g--~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++|||+|||+.+++++|+++|++|| .|..+.++.+..++.++|||||+|.+.++|++||..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 456899999999999999999999999 999999999988999999999999999999999999999999999999999
Q ss_pred ccC
Q 033181 120 AQG 122 (125)
Q Consensus 120 ~~~ 122 (125)
+.+
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 150
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.81 E-value=3.8e-19 Score=100.47 Aligned_cols=77 Identities=30% Similarity=0.531 Sum_probs=70.7
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|.+||.|..+.+. +++|||+|.+.++|+.|+..|++..|.|+.|.|.+
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVF 79 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEE
Confidence 3466889999999999999999999999999998875 34999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 80 a~~~~ 84 (103)
T 2dgu_A 80 AKPPD 84 (103)
T ss_dssp CCCCC
T ss_pred cCCCc
Confidence 98764
No 151
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.81 E-value=3e-20 Score=100.74 Aligned_cols=73 Identities=23% Similarity=0.453 Sum_probs=66.7
Q ss_pred CcEEEEcCCCccC------CHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCe-EE
Q 033181 43 DFKLFVGNLSWSV------TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGR-AM 115 (125)
Q Consensus 43 ~~~l~i~~lp~~~------~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~i 115 (125)
+++|||+|||..+ ++++|+++|++||.|..+.++ ..+|.++|+|||+|.+.++|+.|+..|||..++|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3689999999999 679999999999999999877 36788999999999999999999999999999999 88
Q ss_pred EE
Q 033181 116 RV 117 (125)
Q Consensus 116 ~v 117 (125)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 152
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.3e-19 Score=99.48 Aligned_cols=80 Identities=29% Similarity=0.357 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEE-EEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA-RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~-~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...+++|||+|||..+++++|+.+|++||.|..+ .+..+..+ +.|||+|.+.++|+.|+..|||..++|+.|+|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~----~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET----AVVNVTYSSKDQARQALDKLNGFQLENFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS----EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456889999999999999999999999999999 47665433 339999999999999999999999999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 88 ~a~~~ 92 (96)
T 2e44_A 88 YIPDE 92 (96)
T ss_dssp ECCCC
T ss_pred EcCcc
Confidence 99886
No 153
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.80 E-value=8.7e-20 Score=102.92 Aligned_cols=80 Identities=23% Similarity=0.538 Sum_probs=74.4
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.++++|||+|||..+++++|+++|++||.|..+.+..+. +|.++|+|||+|.+.++|+.|+. ++..++|+.|.|.++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 456899999999999999999999999999999999986 89999999999999999999999 999999999999887
Q ss_pred cCC
Q 033181 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
.++
T Consensus 84 ~~~ 86 (102)
T 2xs2_A 84 IRK 86 (102)
T ss_dssp EEC
T ss_pred CcC
Confidence 654
No 154
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=100.00 Aligned_cols=77 Identities=36% Similarity=0.564 Sum_probs=68.6
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCc-eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC-ceecCeEEEEE
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGN-VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG-VELEGRAMRVS 118 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~-~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~~~g~~i~v~ 118 (125)
.+.++|||+|||..+++++|+++|++||. +..+.+. .+|+|||+|.+.++|+.|+..||| ..++|+.|+|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 78 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVD 78 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEE
Confidence 45678999999999999999999999998 5555442 367999999999999999999999 99999999999
Q ss_pred EccCCC
Q 033181 119 LAQGRR 124 (125)
Q Consensus 119 ~~~~~~ 124 (125)
++.++.
T Consensus 79 ~a~~~~ 84 (93)
T 2cqh_A 79 YSVSKK 84 (93)
T ss_dssp ECCCCC
T ss_pred EccCcc
Confidence 998764
No 155
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=5.7e-20 Score=109.55 Aligned_cols=82 Identities=28% Similarity=0.492 Sum_probs=72.4
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEE--------EEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGA--------RVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~--------~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 111 (125)
..++++|||+|||..+++++|+.+|++||.|..+ .+. .+|.++|||||+|.+.++|..|+..|||..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAAKALKEANGYVLF 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHHHHHHHHTTBEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC
Confidence 3467899999999999999999999999987653 222 35778999999999999999999999999999
Q ss_pred CeEEEEEEccCCC
Q 033181 112 GRAMRVSLAQGRR 124 (125)
Q Consensus 112 g~~i~v~~~~~~~ 124 (125)
|+.|.|.++++.+
T Consensus 119 g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 GKPMVVQFARSAR 131 (143)
T ss_dssp TEECEEEECCCSC
T ss_pred CcEEEEEECCCCC
Confidence 9999999997653
No 156
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.3e-19 Score=100.15 Aligned_cols=76 Identities=21% Similarity=0.459 Sum_probs=69.4
Q ss_pred CCCCcEEEEcCCCc-cCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 40 AETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~-~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
.+++++|||+|||. .+++++|+++|++||.|..+.+. +|+|||+|.+.++|+.|+..|+|..+.|+.|+|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 34678999999998 99999999999999999998884 5799999999999999999999999999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 79 ~a~~~ 83 (96)
T 2kvi_A 79 VSSSN 83 (96)
T ss_dssp EEECC
T ss_pred EcCcC
Confidence 98765
No 157
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.69 E-value=2.4e-21 Score=111.76 Aligned_cols=84 Identities=26% Similarity=0.454 Sum_probs=77.9
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeE--------EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecC
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVG--------ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~--------~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g 112 (125)
.+.++|||+|||..+++++|+++|++||.+.. +.+..+..++.++|||||+|.+.++|+.|+..|+|..+.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 45678999999999999999999999999988 7888877788899999999999999999999999999999
Q ss_pred eEEEEEEccCCC
Q 033181 113 RAMRVSLAQGRR 124 (125)
Q Consensus 113 ~~i~v~~~~~~~ 124 (125)
+.|+|.++.++.
T Consensus 85 ~~l~V~~a~~~~ 96 (116)
T 2lcw_A 85 NPIKVSFATRRA 96 (116)
Confidence 999999998764
No 158
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.80 E-value=9.8e-20 Score=102.53 Aligned_cols=76 Identities=29% Similarity=0.519 Sum_probs=70.7
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++|||+|||..+++++|+++|++||.|..+.+..+ ++|+|||+|.+.++|+.|+..|+|..++|+.|+|.++.++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999988765 5789999999999999999999999999999999999865
Q ss_pred C
Q 033181 124 R 124 (125)
Q Consensus 124 ~ 124 (125)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 3
No 159
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.80 E-value=3.8e-20 Score=105.33 Aligned_cols=82 Identities=21% Similarity=0.352 Sum_probs=74.9
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCc---eeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGN---VVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~---~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
....++|||+|||+.+++++|+++|+.||. +..+.+..+.. |.++|+|||+|.+.++|+.|+. +++..|+|+.|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 346789999999999999999999999988 88899888865 8999999999999999999999 999999999999
Q ss_pred EEEccCC
Q 033181 117 VSLAQGR 123 (125)
Q Consensus 117 v~~~~~~ 123 (125)
|.++.++
T Consensus 86 V~~a~~~ 92 (107)
T 2lmi_A 86 VYEINNE 92 (107)
T ss_dssp CEECCHH
T ss_pred EEECCHH
Confidence 9998753
No 160
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.80 E-value=3.6e-19 Score=109.53 Aligned_cols=83 Identities=36% Similarity=0.589 Sum_probs=77.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|||..+++++|+++|++||.|..+.+..+. ++.++|+|||+|.+.++|+.|+..|+|..|+|+.|+|.+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~ 163 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQL 163 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 3456899999999999999999999999999999998886 888999999999999999999999999999999999999
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.+.
T Consensus 164 a~~~ 167 (177)
T 2f3j_A 164 VASQ 167 (177)
T ss_dssp ESSG
T ss_pred ecCC
Confidence 8764
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.80 E-value=6.3e-19 Score=106.37 Aligned_cols=78 Identities=21% Similarity=0.346 Sum_probs=70.0
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecC--eEEEEEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG--RAMRVSL 119 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~ 119 (125)
....|||+||+..+++++|+++|++||.|..+.+... ..+|+|||+|.+.++|+.|+..|+|..|.| +.|+|.|
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~ 120 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDF 120 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEE
Confidence 3467899999999999999999999999999988643 246899999999999999999999999954 9999999
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
++++
T Consensus 121 Ak~~ 124 (164)
T 1sjr_A 121 SKLT 124 (164)
T ss_dssp CSSS
T ss_pred ecCC
Confidence 9976
No 162
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=103.61 Aligned_cols=76 Identities=12% Similarity=0.117 Sum_probs=69.7
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++|||+|||..+++++|+.+|++||.|..+.+.. .+++|||+|.+.++|+.|+..|||..++|+.|.|.|+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECC
Confidence 467999999999999999999999999999988763 36799999999999999999999999999999999986
Q ss_pred CC
Q 033181 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
..
T Consensus 83 ~~ 84 (111)
T 1whx_A 83 IG 84 (111)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 163
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.80 E-value=4.6e-20 Score=98.52 Aligned_cols=75 Identities=21% Similarity=0.433 Sum_probs=70.4
Q ss_pred EEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
+|||+|||..+++++|+++|++||.+..+.++.+..+|.++|+|||+|.+.++|+.|+.. ++..++|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 489999999999999999999999999999988888899999999999999999999994 889999999999875
No 164
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.80 E-value=1.1e-18 Score=120.35 Aligned_cols=83 Identities=29% Similarity=0.635 Sum_probs=78.6
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
.+.++|||+|||..+++++|..+|.+||.|..+.++.+..+|.++|||||+|.+.++|..||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 45679999999999999999999999999999999988888999999999999999999999999999999999999999
Q ss_pred cCC
Q 033181 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
.++
T Consensus 180 ~~~ 182 (437)
T 3pgw_S 180 RGR 182 (437)
T ss_pred CCC
Confidence 865
No 165
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=6.9e-19 Score=96.37 Aligned_cols=74 Identities=20% Similarity=0.278 Sum_probs=65.3
Q ss_pred CCcEEEEcCCCccCCHHH----HHHHhccCC-ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 42 TDFKLFVGNLSWSVTTES----LTQAFQEYG-NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~----l~~~f~~~g-~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
..+.|||+|||+.++.++ |+.+|++|| .|..+ ++ |+|||.|.+.++|+.|++.|+|..+.|++|+
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 334599999999999887 568999994 99887 22 8999999999999999999999999999999
Q ss_pred EEEccCCCC
Q 033181 117 VSLAQGRRS 125 (125)
Q Consensus 117 v~~~~~~~~ 125 (125)
|.||+.+++
T Consensus 78 v~~A~~~sd 86 (96)
T 2diu_A 78 VSFTPKNRE 86 (96)
T ss_dssp EESSCCSCC
T ss_pred EEecCCCcc
Confidence 999998753
No 166
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.79 E-value=2e-18 Score=107.54 Aligned_cols=117 Identities=9% Similarity=0.133 Sum_probs=90.6
Q ss_pred CHHHHHHHHHhc--CCccccCeEEEEeccCCCCCCCCC-----CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEE
Q 033181 3 TVEDCNAVIENL--DGREYLGRILRVNFSDKPKPKLPL-----YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARV 75 (125)
Q Consensus 3 ~~~~a~~A~~~~--~g~~~~~~~i~v~~~~~~~~~~~~-----~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~ 75 (125)
+.+.+..|++.. ....+.+....+...... +.+.. .....++|||+|||..+++++|+.+|++||.|..+.+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~-p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i 141 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSK-PLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQM 141 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTS-CCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccC-CCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEE
Confidence 556778888877 555666655555544211 11100 1123578999999999999999999999999999999
Q ss_pred eecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccC
Q 033181 76 LYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQG 122 (125)
Q Consensus 76 ~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 122 (125)
+.+. +|.++|+|||+|.+.++|+.|+..+ +..++|+.|.|.++..
T Consensus 142 ~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 142 RRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp EECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred EECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 8874 5889999999999999999999865 4699999999998764
No 167
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.7e-18 Score=94.97 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|+ .+++++|+++|++||.|..+.+. ..+|+|||+|.+.++|+.|+..|+|..++|+.|+|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 446789999995 89999999999999999999884 3468999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 84 a~~~~ 88 (97)
T 1x5p_A 84 ARKQP 88 (97)
T ss_dssp CSSCC
T ss_pred CCCCC
Confidence 98764
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.79 E-value=3.1e-18 Score=99.88 Aligned_cols=75 Identities=21% Similarity=0.414 Sum_probs=68.2
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeE-EEEEecCHHHHHHHHHHhCCceecC--eEEEEEEc
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY-GFVCYSTKAEMETALESLNGVELEG--RAMRVSLA 120 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~ 120 (125)
-.|||+||+..+++++|+++|++||.|..+.+... .+|+ |||+|.+.++|+.|+..|||..|.| +.|+|.|+
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~a 103 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 103 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEEC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEec
Confidence 46789999999999999999999999999987654 2466 9999999999999999999999987 99999999
Q ss_pred cCC
Q 033181 121 QGR 123 (125)
Q Consensus 121 ~~~ 123 (125)
+++
T Consensus 104 k~~ 106 (130)
T 3zzy_A 104 KLT 106 (130)
T ss_dssp SCS
T ss_pred CCC
Confidence 875
No 169
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=1.3e-18 Score=95.59 Aligned_cols=75 Identities=16% Similarity=0.276 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
+.++|||+|||+.+++++|+++|++| .+..+.+. .++|+|||+|.+.++|+.|+..+||..++|++|+|.++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcC
Confidence 56789999999999999999999999 89988774 467899999999999999999999999999999999987
Q ss_pred CC
Q 033181 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
.+
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 170
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.7e-18 Score=96.28 Aligned_cols=77 Identities=21% Similarity=0.346 Sum_probs=68.4
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
..++|||+|||..+++++|+.+|++||.|..+ ..+..++. ||||+|.+.++|+.|+. ++|..|+|+.|.|.++.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECC
Confidence 45789999999999999999999999999987 44444444 99999999999999999 99999999999999987
Q ss_pred CCC
Q 033181 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
++.
T Consensus 81 ~~~ 83 (94)
T 2e5g_A 81 QKE 83 (94)
T ss_dssp CSC
T ss_pred cCC
Confidence 653
No 171
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.79 E-value=2.6e-18 Score=106.75 Aligned_cols=83 Identities=36% Similarity=0.629 Sum_probs=76.7
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||..+++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+.. ++..++|+.|.|.+
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~ 88 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKR 88 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeec
Confidence 34678999999999999999999999999999999999888899999999999999999999985 89999999999999
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.++
T Consensus 89 ~~~~ 92 (196)
T 1l3k_A 89 AVSR 92 (196)
T ss_dssp CCC-
T ss_pred ccCc
Confidence 8754
No 172
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=8.5e-18 Score=97.56 Aligned_cols=73 Identities=18% Similarity=0.277 Sum_probs=66.0
Q ss_pred EEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeE-EEEEecCHHHHHHHHHHhCCceecC--eEEEEEEcc
Q 033181 45 KLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGY-GFVCYSTKAEMETALESLNGVELEG--RAMRVSLAQ 121 (125)
Q Consensus 45 ~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~ 121 (125)
.|||+||++.+++++|+.+|++||.|..+.+... .|+ |||+|.+.++|..|+..|||..|.| +.|+|.||+
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak 100 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYAR 100 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEec
Confidence 4679999999999999999999999999988642 265 9999999999999999999999977 699999998
Q ss_pred CC
Q 033181 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 173
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=5.6e-19 Score=102.59 Aligned_cols=80 Identities=19% Similarity=0.254 Sum_probs=72.0
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCce----eEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNV----VGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~----~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
...+.|||+|||+++++++|+++|++||.| ..+.++.+ .+|.++|+|||+|.+.++|+.|+.. ++..|+|+.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 346789999999999999999999999875 67888887 5899999999999999999999996 99999999999
Q ss_pred EEEccC
Q 033181 117 VSLAQG 122 (125)
Q Consensus 117 v~~~~~ 122 (125)
|..+.+
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 174
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.6e-18 Score=99.01 Aligned_cols=78 Identities=23% Similarity=0.319 Sum_probs=68.9
Q ss_pred CCCCcEEEE--cCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee-----cC
Q 033181 40 AETDFKLFV--GNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL-----EG 112 (125)
Q Consensus 40 ~~~~~~l~i--~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~-----~g 112 (125)
..++..||| +||++.+++++|+++|++||.|..+.++. .+|||||+|.+.++|+.|+..|||..+ .|
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~------~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g 95 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 95 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT------TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCC
Confidence 346678999 77999999999999999999999887653 268999999999999999999999988 68
Q ss_pred eEEEEEEccCC
Q 033181 113 RAMRVSLAQGR 123 (125)
Q Consensus 113 ~~i~v~~~~~~ 123 (125)
+.|.|.|+...
T Consensus 96 ~~l~v~~a~~~ 106 (114)
T 2cq2_A 96 ITLYLNFVEKV 106 (114)
T ss_dssp EECEEEEESCC
T ss_pred cEEEEEecccC
Confidence 99999998743
No 175
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.77 E-value=2.9e-18 Score=98.95 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=71.4
Q ss_pred cEEEEcCC----CccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecC----HHH----HHHHHH--HhCCce
Q 033181 44 FKLFVGNL----SWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST----KAE----METALE--SLNGVE 109 (125)
Q Consensus 44 ~~l~i~~l----p~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~----~~~----a~~a~~--~l~~~~ 109 (125)
..|||+|| |+.+++.+|+.+|++||.|..+.++.++.+|.++|||||+|.+ +.. |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 9999999999999999999999999999999999999999995 333 788888 789999
Q ss_pred ecCeEEEEEEccC
Q 033181 110 LEGRAMRVSLAQG 122 (125)
Q Consensus 110 ~~g~~i~v~~~~~ 122 (125)
|+|+.|+|.+.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998654
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.77 E-value=4.4e-18 Score=93.71 Aligned_cols=76 Identities=28% Similarity=0.463 Sum_probs=62.6
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce--ecCeEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE--LEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~~i~v 117 (125)
..+.++|||+|||+.+++++|+++|++||.|..+.++.+ ++|||||+|.+.++|++ +++.. +.|+.|.|
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v 78 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHI 78 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEE
Confidence 456789999999999999999999999999999988754 68999999999999983 56655 46999999
Q ss_pred EEccCCC
Q 033181 118 SLAQGRR 124 (125)
Q Consensus 118 ~~~~~~~ 124 (125)
.++.++.
T Consensus 79 ~~a~~k~ 85 (89)
T 3d2w_A 79 SNAEPKH 85 (89)
T ss_dssp EECC---
T ss_pred EEcCCCC
Confidence 9998874
No 177
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.77 E-value=2.6e-19 Score=106.04 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=72.8
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
....++|||+|||+++++++|+++|++|| +..+.++.+.. |.++|||||+|.+.++|+.|+ .+++..|+|+.|.|..
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~ 119 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFL 119 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEE
Confidence 34567899999999999999999999999 67888888854 899999999999999999999 6899999999999999
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.++
T Consensus 120 a~~~ 123 (139)
T 2hgn_A 120 NSTT 123 (139)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8765
No 178
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.77 E-value=6.7e-18 Score=102.24 Aligned_cols=79 Identities=29% Similarity=0.505 Sum_probs=73.0
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCC
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGR 123 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 123 (125)
++|||+|||.++++++|+++|++||.|..+.+..+. ++.++|+|||+|.+.++|..|+..++|..+.|+.|.+.++.++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 379999999999999999999999999999998884 5778999999999999999999999999999999999998765
No 179
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.76 E-value=5.9e-18 Score=106.35 Aligned_cols=76 Identities=21% Similarity=0.281 Sum_probs=70.2
Q ss_pred CCcEEEEcCCC-ccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEc
Q 033181 42 TDFKLFVGNLS-WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLA 120 (125)
Q Consensus 42 ~~~~l~i~~lp-~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 120 (125)
++++|||+||| ..+++++|+++|++||.|..+.+..+ .+|+|||+|.+.++|+.|+..|||..+.|+.|+|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 56789999999 89999999999999999999988754 3689999999999999999999999999999999998
Q ss_pred cC
Q 033181 121 QG 122 (125)
Q Consensus 121 ~~ 122 (125)
+.
T Consensus 78 ~~ 79 (205)
T 3tyt_A 78 KQ 79 (205)
T ss_dssp SC
T ss_pred cC
Confidence 63
No 180
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.76 E-value=8.6e-19 Score=102.10 Aligned_cols=80 Identities=24% Similarity=0.328 Sum_probs=71.2
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCcee--EEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVV--GARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRV 117 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~--~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 117 (125)
....++|||+|||+.+++++|+++|++| .+. .+.++.+.. |.++|||||+|.+.++|++|+.. ++..|+|+.|.|
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V 115 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIEV 115 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEE
Confidence 3456789999999999999999999999 566 788888855 89999999999999999999984 789999999999
Q ss_pred EEccC
Q 033181 118 SLAQG 122 (125)
Q Consensus 118 ~~~~~ 122 (125)
..+.+
T Consensus 116 ~~a~~ 120 (126)
T 2hgm_A 116 FKSSQ 120 (126)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88764
No 181
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.76 E-value=1.7e-18 Score=99.66 Aligned_cols=76 Identities=26% Similarity=0.388 Sum_probs=65.9
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeE-----E
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRA-----M 115 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~-----i 115 (125)
...++|||+|||..+++++|+++|.+||.|..+.+..+ |||||+|.+.++|+.|+..|||..|+|+. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 35688999999999999999999999999999988643 79999999999999999999999999988 7
Q ss_pred EEEEccCC
Q 033181 116 RVSLAQGR 123 (125)
Q Consensus 116 ~v~~~~~~ 123 (125)
++..+.++
T Consensus 87 ~v~~~~~~ 94 (115)
T 3beg_B 87 RVKVDGPR 94 (115)
T ss_dssp EEEECC--
T ss_pred EeccCCCC
Confidence 88776654
No 182
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.75 E-value=3.3e-17 Score=92.71 Aligned_cols=82 Identities=13% Similarity=0.108 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCc-----cCCHHHHHHHhccCCceeEEEEeecCC-CCCceeEEEEEecCHHHHHHHHHHhCCceecCeE
Q 033181 41 ETDFKLFVGNLSW-----SVTTESLTQAFQEYGNVVGARVLYDGE-SGRSRGYGFVCYSTKAEMETALESLNGVELEGRA 114 (125)
Q Consensus 41 ~~~~~l~i~~lp~-----~~~~~~l~~~f~~~g~~~~~~~~~~~~-~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~ 114 (125)
.++..|+|.|+.. +-.+++|+..|++||.|..+.++.++. ++.++|++||+|.+.++|..|+..|||..++|+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4667899999963 225789999999999999999988754 3678999999999999999999999999999999
Q ss_pred EEEEEccC
Q 033181 115 MRVSLAQG 122 (125)
Q Consensus 115 i~v~~~~~ 122 (125)
|.|.++.+
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999864
No 183
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.75 E-value=1.4e-17 Score=96.62 Aligned_cols=77 Identities=25% Similarity=0.434 Sum_probs=69.6
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..++++|||+|+ .+++++|+.+|++||.|..+.+. ..+|||||+|.+.++|+.|+..|+|..++|+.|+|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 356789999995 69999999999999999999885 3478999999999999999999999999999999999
Q ss_pred ccCCC
Q 033181 120 AQGRR 124 (125)
Q Consensus 120 ~~~~~ 124 (125)
+.++.
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 98764
No 184
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.74 E-value=1e-17 Score=105.55 Aligned_cols=82 Identities=24% Similarity=0.506 Sum_probs=74.0
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+..++|..++|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 34789999999999999999999999999999999887788999999999999999999999999999999999998876
Q ss_pred CC
Q 033181 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
.+
T Consensus 107 ~~ 108 (216)
T 2qfj_A 107 NI 108 (216)
T ss_dssp CC
T ss_pred Cc
Confidence 54
No 185
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.74 E-value=3.1e-17 Score=100.11 Aligned_cols=82 Identities=24% Similarity=0.444 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCC--CceeEEEEEecCHHHHHHHHHHhCCceec---CeEEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG--RSRGYGFVCYSTKAEMETALESLNGVELE---GRAMR 116 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~~i~ 116 (125)
.+++|||+|||+.+++++|+++|++||.|..+.+..+..++ .++|+|||+|.+.++|+.|+..++|..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 45789999999999999999999999999999999887766 88999999999999999999999998775 67788
Q ss_pred EEEccCC
Q 033181 117 VSLAQGR 123 (125)
Q Consensus 117 v~~~~~~ 123 (125)
+.++.+.
T Consensus 82 ~~~~~~~ 88 (175)
T 3nmr_A 82 MKPADSE 88 (175)
T ss_dssp EEECGGG
T ss_pred Ecccccc
Confidence 8887654
No 186
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.74 E-value=3.7e-17 Score=106.92 Aligned_cols=81 Identities=22% Similarity=0.454 Sum_probs=73.9
Q ss_pred CCCCcEEEEcCCCccCCHHHHH----HHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLT----QAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~----~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i 115 (125)
..++++|||+|||..+++++|+ ++|++||.|..+.+.. ++..+|||||+|.+.++|+.|+..+||..|.|+.|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 82 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 82 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEE
Confidence 4567899999999999999966 8999999999988764 67789999999999999999999999999999999
Q ss_pred EEEEccCC
Q 033181 116 RVSLAQGR 123 (125)
Q Consensus 116 ~v~~~~~~ 123 (125)
+|.|+..+
T Consensus 83 ~v~~a~~~ 90 (282)
T 3pgw_A 83 RIQYAKTD 90 (282)
T ss_pred EEEEeccC
Confidence 99998764
No 187
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=95.34 Aligned_cols=64 Identities=22% Similarity=0.469 Sum_probs=57.7
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCC---CCceeEEEEEecCHHHHHHHHHHh
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES---GRSRGYGFVCYSTKAEMETALESL 105 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~---~~~~g~~fv~f~~~~~a~~a~~~l 105 (125)
..+++|||+|||..+++++|+++|++||.|. +.++.+..+ |.++|||||+|.+.++|+.|+..+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 4567899999999999999999999999999 777666555 788999999999999999999988
No 188
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.73 E-value=2.2e-17 Score=90.37 Aligned_cols=72 Identities=21% Similarity=0.563 Sum_probs=65.1
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccC----C-------ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCce
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEY----G-------NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVE 109 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~----g-------~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~ 109 (125)
.+.++|||+|||..+++++|+++|++| | .+..+.+..+ +|+|||+|.+.++|+.|+ .++|..
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~~ 76 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGII 76 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCCE
Confidence 356799999999999999999999999 8 8888877643 689999999999999999 999999
Q ss_pred ecCeEEEEEE
Q 033181 110 LEGRAMRVSL 119 (125)
Q Consensus 110 ~~g~~i~v~~ 119 (125)
++|+.|+|+.
T Consensus 77 ~~g~~l~V~r 86 (87)
T 2hzc_A 77 FQGQSLKIRR 86 (87)
T ss_dssp ETTEECEEEC
T ss_pred ECCeEEEEeC
Confidence 9999999863
No 189
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.72 E-value=2.2e-17 Score=105.44 Aligned_cols=79 Identities=23% Similarity=0.385 Sum_probs=70.4
Q ss_pred CCCCcEEEEcCCCccC---------CHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 033181 40 AETDFKLFVGNLSWSV---------TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~---------~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
....++|||+||+..+ ++++|+.+|++||.|..+.++.. +|+|||+|.+.++|+.|+..|+|..|
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4567899999999998 69999999999999999988743 78999999999999999999999999
Q ss_pred ------------cCeEEEEEEccCCC
Q 033181 111 ------------EGRAMRVSLAQGRR 124 (125)
Q Consensus 111 ------------~g~~i~v~~~~~~~ 124 (125)
.|+.|.|.||.++.
T Consensus 205 ~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 205 LLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp CCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eccccccccccCCCCEEEEEEccCCC
Confidence 89999999998653
No 190
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=91.78 Aligned_cols=76 Identities=20% Similarity=0.383 Sum_probs=64.5
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++|||+|||..+++++|+++|++||.|..+.+..+ ++|||||+|.+.++|+++.. ....+.|+.|.|.++.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecC
Confidence 5689999999999999999999999999999988644 57899999999999976432 1244589999999998
Q ss_pred CCC
Q 033181 122 GRR 124 (125)
Q Consensus 122 ~~~ 124 (125)
++.
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 191
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.72 E-value=2.2e-17 Score=100.17 Aligned_cols=80 Identities=29% Similarity=0.662 Sum_probs=73.4
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
++++|||+|||.++++++|+++|++||.|..+.+..+..+|.++|+|||+|.+.++|+.|+. ++..++|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 45789999999999999999999999999999999888889999999999999999999999 4678999999998876
Q ss_pred CC
Q 033181 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 80 ~~ 81 (167)
T 2cjk_A 80 PR 81 (167)
T ss_dssp CH
T ss_pred ch
Confidence 53
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4e-16 Score=89.29 Aligned_cols=82 Identities=16% Similarity=0.315 Sum_probs=69.1
Q ss_pred CCCCCcEEEEcCCCccCC-----------HHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 033181 39 YAETDFKLFVGNLSWSVT-----------TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 107 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~-----------~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 107 (125)
...++.+|+|.||..... +++|+++|++||.|..+.+ .+. .++|+|||+|.+.++|+.|+..|||
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai~~lng 86 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCIQTLDG 86 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHHHHSTT
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHHHHcCC
Confidence 345678999999944322 4799999999999999965 332 2689999999999999999999999
Q ss_pred ceecCeEEEEEEccCCC
Q 033181 108 VELEGRAMRVSLAQGRR 124 (125)
Q Consensus 108 ~~~~g~~i~v~~~~~~~ 124 (125)
..++|+.|+|.++.++.
T Consensus 87 ~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 87 RWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CEETTEECEEEECCSCC
T ss_pred CEECCcEEEEEEeCCCC
Confidence 99999999999998763
No 193
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.70 E-value=6.6e-17 Score=103.05 Aligned_cols=79 Identities=28% Similarity=0.477 Sum_probs=72.7
Q ss_pred CCCCcEEEEcCCCc-cCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 40 AETDFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 40 ~~~~~~l~i~~lp~-~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
..++++|||+|||. .+++++|+++|++||.|..+.+..+. +|+|||+|.+.++|+.|+..++|..+.|+.|.|.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~ 105 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRIT 105 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 45678999999999 99999999999999999999988663 6799999999999999999999999999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 106 ~a~~~ 110 (229)
T 2adc_A 106 LSKHQ 110 (229)
T ss_dssp CCSCC
T ss_pred EecCc
Confidence 98754
No 194
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.69 E-value=3.3e-16 Score=101.57 Aligned_cols=78 Identities=31% Similarity=0.544 Sum_probs=71.5
Q ss_pred CCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEE
Q 033181 40 AETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSL 119 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 119 (125)
..+.++|||+|||.++++++|+++|++||.|..+.+..+ +|+|||+|.+.++|..|+..++|..+.|+.|.|.+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 456689999999999999999999999999999988543 68999999999999999999999999999999999
Q ss_pred ccCC
Q 033181 120 AQGR 123 (125)
Q Consensus 120 ~~~~ 123 (125)
+.+.
T Consensus 93 a~~~ 96 (261)
T 3sde_A 93 ATHG 96 (261)
T ss_dssp CCCS
T ss_pred cccC
Confidence 8764
No 195
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.68 E-value=3.1e-16 Score=88.70 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=69.5
Q ss_pred CCCcEEEEcCC--CccCC--------HHHHHHHhccCCceeEEEEeecCCC--CCceeEEEEEecCHHHHHHHHHHhCCc
Q 033181 41 ETDFKLFVGNL--SWSVT--------TESLTQAFQEYGNVVGARVLYDGES--GRSRGYGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 41 ~~~~~l~i~~l--p~~~~--------~~~l~~~f~~~g~~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~ 108 (125)
.++..|.+.|+ |..+. .++|+..|++||.|..+.++.+..+ +.++|++||+|.+.++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35678889988 44443 2689999999999999999877543 357899999999999999999999999
Q ss_pred eecCeEEEEEEccC
Q 033181 109 ELEGRAMRVSLAQG 122 (125)
Q Consensus 109 ~~~g~~i~v~~~~~ 122 (125)
.++|+.|+|.|+.+
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999764
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.67 E-value=3.5e-17 Score=100.09 Aligned_cols=83 Identities=29% Similarity=0.512 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 39 YAETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 39 ~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
...++++|||+|||..+++++|+++|.+||.+..+ ++.+..+|.++|+|||+|.+.++|+.|+. ++|..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-AVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-CCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-EEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 34567899999999999999999999999865542 22223456778999999999999999995 99999999999999
Q ss_pred EccCC
Q 033181 119 LAQGR 123 (125)
Q Consensus 119 ~~~~~ 123 (125)
++.++
T Consensus 87 ~~~~~ 91 (175)
T 1fje_B 87 KPKGR 91 (175)
T ss_dssp CCCCS
T ss_pred cCCCc
Confidence 98865
No 197
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.67 E-value=1.2e-15 Score=87.84 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=69.2
Q ss_pred CCcEEEEcCCCc--cC---CHHHHHHHhccCCceeEEEEeecCC----CCCceeEEEEEecCHHHHHHHHHHhCCceecC
Q 033181 42 TDFKLFVGNLSW--SV---TTESLTQAFQEYGNVVGARVLYDGE----SGRSRGYGFVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 42 ~~~~l~i~~lp~--~~---~~~~l~~~f~~~g~~~~~~~~~~~~----~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g 112 (125)
+++.|+|.|+-. ++ .+++|+..|++||.|..+.++.+.. ++..+|++||+|.+.++|.+|+..|||..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 567899999842 33 2578999999999999999987743 35677999999999999999999999999999
Q ss_pred eEEEEEEccC
Q 033181 113 RAMRVSLAQG 122 (125)
Q Consensus 113 ~~i~v~~~~~ 122 (125)
+.|+|.|+.+
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999753
No 198
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.66 E-value=1.4e-16 Score=99.25 Aligned_cols=76 Identities=29% Similarity=0.499 Sum_probs=70.2
Q ss_pred CcEEEEcCCCc-cCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 43 DFKLFVGNLSW-SVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 43 ~~~l~i~~lp~-~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
+++|||+|||. .+++++|+++|++||.|..+.+..+. +|+|||+|.+.++|+.|+..|+|..++|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 57899999999 99999999999999999999887652 6799999999999999999999999999999999987
Q ss_pred CC
Q 033181 122 GR 123 (125)
Q Consensus 122 ~~ 123 (125)
++
T Consensus 78 ~~ 79 (198)
T 1qm9_A 78 HQ 79 (198)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 199
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.64 E-value=2.5e-16 Score=88.99 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=62.4
Q ss_pred EcCCCccCCHHHHHHHh------------ccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEE
Q 033181 48 VGNLSWSVTTESLTQAF------------QEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAM 115 (125)
Q Consensus 48 i~~lp~~~~~~~l~~~f------------~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i 115 (125)
..+||..+++++|++.| ++||.|..+.+..+. ++.++|+|||+|.+.++|++|+..|||..++|+.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 45677777777666555 999999999998774 47889999999999999999999999999999999
Q ss_pred EEEEc
Q 033181 116 RVSLA 120 (125)
Q Consensus 116 ~v~~~ 120 (125)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 200
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.62 E-value=2.4e-15 Score=91.56 Aligned_cols=75 Identities=19% Similarity=0.525 Sum_probs=65.9
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccC----C-------ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEY----G-------NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~----g-------~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
++++|||+|||.++++++|+++|++| | .+..+.+.. .+|+|||+|.+.++|+.|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 45789999999999999999999999 6 566665543 3689999999999999999 8999999
Q ss_pred cCeEEEEEEccCC
Q 033181 111 EGRAMRVSLAQGR 123 (125)
Q Consensus 111 ~g~~i~v~~~~~~ 123 (125)
.|+.|.|.++.+.
T Consensus 76 ~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 76 QGQSLKIRRPHDY 88 (172)
T ss_dssp TTEECEEECCSSC
T ss_pred cCceeeecCCccc
Confidence 9999999998754
No 201
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.61 E-value=3.6e-15 Score=92.66 Aligned_cols=75 Identities=19% Similarity=0.530 Sum_probs=64.8
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccC----C-------ceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEY----G-------NVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~----g-------~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
.+++|||+|||.++++++|+++|++| | .+..+.+. ..+|+|||+|.+.++|+.|+ .++|..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~------~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE------TTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec------CCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 45789999999999999999999999 4 45555443 34789999999999999999 8999999
Q ss_pred cCeEEEEEEccCC
Q 033181 111 EGRAMRVSLAQGR 123 (125)
Q Consensus 111 ~g~~i~v~~~~~~ 123 (125)
.|+.|.|.++.++
T Consensus 76 ~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 76 QGQSLKIRRPHDY 88 (198)
T ss_dssp TTEEEEEECCCCC
T ss_pred cCceEEEeCCCCC
Confidence 9999999998754
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=3.4e-14 Score=79.52 Aligned_cols=65 Identities=22% Similarity=0.361 Sum_probs=57.0
Q ss_pred ccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEccCCC
Q 033181 53 WSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQGRR 124 (125)
Q Consensus 53 ~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 124 (125)
..+++++|+.+|++||.|..+.+. +.++|||||+|.+.++|+.|+..+++ +.|+.|+|.|++++.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 468999999999999999999887 35689999999999999999997444 679999999998764
No 203
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.53 E-value=1.4e-13 Score=78.77 Aligned_cols=78 Identities=15% Similarity=0.175 Sum_probs=64.5
Q ss_pred CCCcEEEEcCCCccCC----------HHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 033181 41 ETDFKLFVGNLSWSVT----------TESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~----------~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
.++..|.|.|+-.... .++|+..|++||.|..+.+..+. .+|++||+|.+.++|+.|+..|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3566788888743211 25889999999999999886542 479999999999999999999999999
Q ss_pred cCeEEEEEEccC
Q 033181 111 EGRAMRVSLAQG 122 (125)
Q Consensus 111 ~g~~i~v~~~~~ 122 (125)
+|+.|+|.|+..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999753
No 204
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.53 E-value=5.2e-14 Score=94.15 Aligned_cols=76 Identities=25% Similarity=0.364 Sum_probs=64.6
Q ss_pred CCCCcEEEEcC--CCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceec---Ce-
Q 033181 40 AETDFKLFVGN--LSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELE---GR- 113 (125)
Q Consensus 40 ~~~~~~l~i~~--lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~- 113 (125)
..++..|||+| |+..+++++|+++|++||.|..+.+.. .+|||||+|.+.++|++|+..|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~ 88 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK 88 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCCc
Confidence 45678999998 578899999999999999999876643 3689999999999999999999998872 44
Q ss_pred -EEEEEEcc
Q 033181 114 -AMRVSLAQ 121 (125)
Q Consensus 114 -~i~v~~~~ 121 (125)
.|.+.|+.
T Consensus 89 ~~ly~~~~~ 97 (345)
T 3tht_A 89 ITLYLNFVE 97 (345)
T ss_dssp EECEEEECS
T ss_pred eEEEEEEee
Confidence 57778874
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=1.2e-12 Score=71.05 Aligned_cols=74 Identities=24% Similarity=0.324 Sum_probs=61.5
Q ss_pred CCCcEEEEcCCCc----cCCH----HHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecC
Q 033181 41 ETDFKLFVGNLSW----SVTT----ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG 112 (125)
Q Consensus 41 ~~~~~l~i~~lp~----~~~~----~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g 112 (125)
+++.+|.|.-.+. .+.+ .+|.+.|.+||.+..+++..+ .+||+|.+.++|.+|+. |+|..++|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d--------~~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED--------KMWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS--------SEEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC--------CEEEEECChHHHHHHHh-cCCeEeCC
Confidence 4556777766652 3333 578999999999999988766 38999999999999998 99999999
Q ss_pred eEEEEEEccCC
Q 033181 113 RAMRVSLAQGR 123 (125)
Q Consensus 113 ~~i~v~~~~~~ 123 (125)
+.|+|+++++.
T Consensus 76 r~LkV~lkt~d 86 (91)
T 2dnr_A 76 RTITIALKSPS 86 (91)
T ss_dssp EEEEEEECCCS
T ss_pred eEEEEEeCCCC
Confidence 99999999875
No 206
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-11 Score=71.14 Aligned_cols=76 Identities=12% Similarity=0.131 Sum_probs=65.9
Q ss_pred CCCCcEEEEcCCCcc-CCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecC-HHHHHHHHHHhC--CceecCeEE
Q 033181 40 AETDFKLFVGNLSWS-VTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYST-KAEMETALESLN--GVELEGRAM 115 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~-~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~-~~~a~~a~~~l~--~~~~~g~~i 115 (125)
.++++.|+|+||+.. ++.++|+.+|++||.|.++.+..+.. .|||.|.+ ..+|..++..++ +..|.|..+
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~ 88 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLRNKEV 88 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSE
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEeCcEE
Confidence 457899999999999 99999999999999999998876632 59999999 899999999996 577888888
Q ss_pred EEEEcc
Q 033181 116 RVSLAQ 121 (125)
Q Consensus 116 ~v~~~~ 121 (125)
++....
T Consensus 89 ~~evL~ 94 (121)
T 1owx_A 89 TWEVLE 94 (121)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 877643
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.2e-11 Score=65.78 Aligned_cols=74 Identities=22% Similarity=0.324 Sum_probs=61.5
Q ss_pred CCCCcEEEEcCCCcc-----CCH----HHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCcee
Q 033181 40 AETDFKLFVGNLSWS-----VTT----ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVEL 110 (125)
Q Consensus 40 ~~~~~~l~i~~lp~~-----~~~----~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 110 (125)
-+++.+|.|.-++.. +.+ .+|.+.|.+||.+..+++..+ .+||+|.+.++|.+|+. |+|..+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d--------~~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG--------QMLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT--------EEEEECSCSHHHHHHHH-GGGSEE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC--------cEEEEEcChHHHHHHHh-cCCeee
Confidence 346678888877632 322 468899999999999988866 39999999999999999 999999
Q ss_pred cCeEEEEEEccC
Q 033181 111 EGRAMRVSLAQG 122 (125)
Q Consensus 111 ~g~~i~v~~~~~ 122 (125)
+|+.|+|++..+
T Consensus 83 ~Gr~L~V~~k~~ 94 (95)
T 1ufw_A 83 KGRAVKISGPSS 94 (95)
T ss_dssp TTEEEEEECCCC
T ss_pred CCeEEEEeccCC
Confidence 999999998764
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.22 E-value=7e-11 Score=74.80 Aligned_cols=66 Identities=21% Similarity=0.276 Sum_probs=59.0
Q ss_pred CHHHHHHHhccCCceeEEEEeecC----CCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 56 TTESLTQAFQEYGNVVGARVLYDG----ESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 56 ~~~~l~~~f~~~g~~~~~~~~~~~----~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
.+++|...|++||.|..+.+..+. .++..+|++||+|.+.++|++|+..|+|..++|+.|.+.|+.
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 457899999999999999987553 344788999999999999999999999999999999999975
No 209
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.00 E-value=2.7e-10 Score=65.12 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCC---CCCCCcEEEEcCCCccCCHH
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPL---YAETDFKLFVGNLSWSVTTE 58 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~---~~~~~~~l~i~~lp~~~~~~ 58 (125)
|+++++|.+|++.|||..+.|++|.|.++.+.+..... .....+.|||+|||++++++
T Consensus 52 f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 52 FETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC---------------------------
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEECCCccccccccccccCCCCceEeCCCCCCcccc
Confidence 78999999999999999999999999998765543221 22344679999999998876
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.99 E-value=7e-09 Score=57.85 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=64.6
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccC-----CceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEY-----GNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~-----g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
..++|-+-+||..+++..++.++.++ |.+..+.+..+ .+.|+|+|.+...|.+|.-.|+|..|+|+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 45678888999999999999999999 99999988766 34599999999999999999999999999999
Q ss_pred EEE
Q 033181 117 VSL 119 (125)
Q Consensus 117 v~~ 119 (125)
|.-
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 863
No 211
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.61 E-value=1.7e-08 Score=56.16 Aligned_cols=52 Identities=23% Similarity=0.293 Sum_probs=41.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCC-----CCCcEEEEcCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYA-----ETDFKLFVGNLS 52 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~-----~~~~~l~i~~lp 52 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.+.+....... .....|||+||+
T Consensus 44 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 44 FEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp CSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred ECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 7899999999999999999999999999976654322211 225679999987
No 212
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.42 E-value=2.9e-08 Score=56.44 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCCHHHHHHHhccCCc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVTTESLTQAFQEYGN 69 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~~~~l~~~f~~~g~ 69 (125)
|.+.++|.+|+..|||..+.|+.|.|.|+.+.+.. .+++....++++.++|++||.
T Consensus 54 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~-------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 54 YEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRAF-------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHHT-------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEEecCChhh-------------hhhhHhHhHHHHHHHHHHhCC
Confidence 68999999999999999999999999999754322 466778888999999999984
No 213
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.28 E-value=1.1e-06 Score=48.14 Aligned_cols=34 Identities=12% Similarity=0.334 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|++.|||..+.|++|+|.|+.....
T Consensus 53 F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd 86 (96)
T 2diu_A 53 FINQDSAERAQKRMENEDVFGNRIIVSFTPKNRE 86 (96)
T ss_dssp ESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCC
T ss_pred ECCHHHHHHHHHHhcCCccCCceEEEEecCCCcc
Confidence 7899999999999999999999999999975543
No 214
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.27 E-value=4.8e-06 Score=46.17 Aligned_cols=73 Identities=16% Similarity=0.129 Sum_probs=59.7
Q ss_pred cEEEEcCCCccCCH-----HHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEEEE
Q 033181 44 FKLFVGNLSWSVTT-----ESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMRVS 118 (125)
Q Consensus 44 ~~l~i~~lp~~~~~-----~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 118 (125)
++|+|.+++.++-. +.++.+|..|+.+........ -.-..|.|.+.++|.+|-..||+..+.|+.++|.
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS------FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS------FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT------TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc------ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 46889999886522 467889999998877655533 1247899999999999999999999999999999
Q ss_pred EccC
Q 033181 119 LAQG 122 (125)
Q Consensus 119 ~~~~ 122 (125)
|+.+
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9874
No 215
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.19 E-value=3.2e-05 Score=42.06 Aligned_cols=68 Identities=12% Similarity=0.138 Sum_probs=55.2
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCC--CceeEEEEEecCHHHHHHHHHHhCCceec
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESG--RSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 111 (125)
+.|-|+.||+.++++++.+.+++...+..........+. ....-|||.|.+.+++..-...++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 368899999999999999999998877666665543322 23367999999999999999999998873
No 216
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=2e-06 Score=47.23 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|++.++|.+|+..|||..+.|++|+|.++.+...
T Consensus 59 f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~ 92 (96)
T 2dgx_A 59 MENLQDAIGAVNSLHRYKIGSKKILVSLATGASG 92 (96)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 6899999999999999999999999999976543
No 217
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.17 E-value=3.9e-06 Score=45.66 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHhcCC-ccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDG-REYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g-~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..||| ..+.|++|.|.++.+....
T Consensus 51 f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 86 (93)
T 2cqh_A 51 YPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 86 (93)
T ss_dssp CSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCCC
T ss_pred ECCHHHHHHHHHHccCCeeECCEEEEEEEccCcccc
Confidence 7899999999999999 9999999999999876544
No 218
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.16 E-value=3.8e-06 Score=46.21 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~ 36 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+.+...
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 92 (99)
T 1whw_A 57 FMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92 (99)
T ss_dssp ESSHHHHHHHHHHTTTEESSSCEEEEEECCCCSTTC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcccc
Confidence 789999999999999999999999999998766543
No 219
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=5.1e-06 Score=45.97 Aligned_cols=36 Identities=33% Similarity=0.540 Sum_probs=32.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~ 36 (125)
|.+.++|.+|++.|||..+.|++|.|.++.+.+...
T Consensus 61 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 61 FELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp CSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCC
Confidence 789999999999999999999999999998765543
No 220
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.13 E-value=1.1e-06 Score=47.70 Aligned_cols=35 Identities=20% Similarity=0.214 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.|||..+.|+.|.|.++.+....
T Consensus 52 f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~~ 86 (90)
T 3p5t_L 52 VGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEHH 86 (90)
T ss_dssp C-CHHHHHHHHHHGGGSCSSSCCCEECCC------
T ss_pred ECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCccc
Confidence 78999999999999999999999999999765443
No 221
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.12 E-value=2.7e-06 Score=45.24 Aligned_cols=33 Identities=24% Similarity=0.606 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.++++|.+|+..|||..+.|++|.|.++.+.+
T Consensus 50 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 50 FTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred ECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 689999999999999999999999999997653
No 222
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.11 E-value=4.3e-06 Score=45.26 Aligned_cols=35 Identities=34% Similarity=0.534 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+....
T Consensus 50 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 84 (90)
T 2dnp_A 50 MEKEADAKAAIAQLNGKEVKGKRINVELSTKGQKK 84 (90)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEESCCCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCCC
Confidence 78999999999999999999999999999876544
No 223
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.11 E-value=2.7e-06 Score=45.71 Aligned_cols=33 Identities=12% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.++++|.+|+..|||..+.|+.|.|.++.+.+
T Consensus 54 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 54 FENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred EecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 789999999999999999999999999997654
No 224
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.09 E-value=5.8e-06 Score=44.90 Aligned_cols=35 Identities=29% Similarity=0.447 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|+..|||..+.|+.|.|.++.+....
T Consensus 51 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 85 (92)
T 2dgt_A 51 MERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLRT 85 (92)
T ss_dssp ESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCSC
T ss_pred ECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCCC
Confidence 78999999999999999999999999999766544
No 225
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=6.8e-06 Score=45.43 Aligned_cols=35 Identities=17% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|.|.|+.+....
T Consensus 61 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 95 (102)
T 2fc8_A 61 FNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEG 95 (102)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSS
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCC
Confidence 78999999999999999999999999999876544
No 226
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.06 E-value=3.2e-06 Score=49.15 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHhcCCccccC--eEEEEeccCCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~--~~i~v~~~~~~~~~~ 36 (125)
|+++++|.+|++.|||..+.| +.|+|+|+++.....
T Consensus 73 f~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l~v 110 (130)
T 3zzy_A 73 YADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLNV 110 (130)
T ss_dssp ESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSCCC
T ss_pred ECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCceeE
Confidence 689999999999999999988 999999998765443
No 227
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=7.9e-06 Score=44.64 Aligned_cols=35 Identities=23% Similarity=0.434 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|+++++|.+|+..|||..+.|++|.|.++.+.+..
T Consensus 55 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 89 (96)
T 1x5t_A 55 FASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 89 (96)
T ss_dssp BSSHHHHHHHHHTTTTCEETTEECEEEESCCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEEecccCCC
Confidence 78999999999999999999999999999766544
No 228
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=6.9e-06 Score=45.09 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|.|.|+.+....
T Consensus 56 f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~ 90 (97)
T 1x5p_A 56 YEKMESADQAVAELNGTQVESVQLKVNIARKQPML 90 (97)
T ss_dssp ESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCCC
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCCC
Confidence 68999999999999999999999999999766544
No 229
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.05 E-value=1.1e-05 Score=44.59 Aligned_cols=35 Identities=20% Similarity=0.413 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.+....
T Consensus 60 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 94 (101)
T 2fc9_A 60 FASFEDAKEALNSCNKREIEGRAIRLELQGPRGSP 94 (101)
T ss_dssp CSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCCC
T ss_pred ECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCCC
Confidence 78999999999999999999999999999766443
No 230
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.04 E-value=7e-06 Score=45.50 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.+....
T Consensus 64 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (103)
T 2cq0_A 64 FHRREDAARAIAGVSGFGYDHLILNVEWAKPSTNS 98 (103)
T ss_dssp ESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCS
T ss_pred ECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCCC
Confidence 78999999999999999999999999999866544
No 231
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=8.1e-06 Score=44.80 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+....
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 91 (98)
T 2cpf_A 57 YKKPEQAQKALKQLQGHTVDGHKLEVRISERATKP 91 (98)
T ss_dssp ESSHHHHHHHHHHSTTCEETTEECEEECSSCSSCC
T ss_pred ECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCCC
Confidence 78999999999999999999999999999765544
No 232
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.03 E-value=1e-05 Score=45.80 Aligned_cols=35 Identities=14% Similarity=0.211 Sum_probs=31.8
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.|||..+.|+.|+|.|+.+....
T Consensus 74 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 108 (115)
T 2cpz_A 74 YDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 108 (115)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEECCCCSCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCcC
Confidence 78999999999999999999999999999866544
No 233
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.03 E-value=4.4e-06 Score=45.20 Aligned_cols=29 Identities=14% Similarity=0.083 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEecc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~ 29 (125)
|.++++|.+|++.|||..+.|++|+|+++
T Consensus 50 y~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 50 YTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 67999999999999999999999999988
No 234
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.02 E-value=6.6e-06 Score=44.49 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+....
T Consensus 49 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 83 (90)
T 2dnq_A 49 IEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSKA 83 (90)
T ss_dssp ESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCCC
T ss_pred ECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCCC
Confidence 78999999999999999999999999999866554
No 235
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.02 E-value=9.7e-06 Score=45.83 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.|||..+.|+.|.|.|+.+....
T Consensus 64 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 64 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA 98 (115)
T ss_dssp ESSHHHHHHHHHHTTTCEETTEECEEEESSCCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCCC
Confidence 78999999999999999999999999999766544
No 236
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.02 E-value=8.1e-06 Score=44.40 Aligned_cols=35 Identities=20% Similarity=0.320 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhcC-CccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLD-GREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~-g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.++++|.+|++.++ +..+.|++|.|+|+.+.+..
T Consensus 51 F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~~ 86 (91)
T 2lxi_A 51 FSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPKI 86 (91)
T ss_dssp CSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCCC
T ss_pred ecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCCC
Confidence 789999999999874 57799999999999765443
No 237
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.02 E-value=5.2e-06 Score=46.80 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|++.++|.+|++.|||..+.|++|+|.++.+..
T Consensus 70 f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 70 YIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred ECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 789999999999999999999999999997654
No 238
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.01 E-value=1.2e-05 Score=44.66 Aligned_cols=35 Identities=17% Similarity=0.471 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+....
T Consensus 52 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 52 FDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred eCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 78999999999999999999999999999766544
No 239
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=9.5e-06 Score=44.94 Aligned_cols=35 Identities=26% Similarity=0.585 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|.|.|+.+....
T Consensus 62 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2cqi_A 62 FYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ 96 (103)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTCC
T ss_pred ECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCccc
Confidence 78999999999999999999999999999865543
No 240
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.01 E-value=1.1e-05 Score=44.47 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.+...
T Consensus 58 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 58 FSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp ESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred eCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 7899999999999999999999999999976554
No 241
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.00 E-value=6e-06 Score=45.34 Aligned_cols=33 Identities=15% Similarity=0.238 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|++.|||..+.|+.|.|.++.+.+
T Consensus 63 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 63 YPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp CSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 789999999999999999999999999997654
No 242
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.00 E-value=4e-06 Score=44.97 Aligned_cols=32 Identities=22% Similarity=0.370 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|++.|||..+.|++|.|.|+.+.
T Consensus 55 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 55 FFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 68999999999999999999999999998653
No 243
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99 E-value=6.7e-06 Score=45.33 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+.+.
T Consensus 65 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 98 (100)
T 2do4_A 65 YENESQASQAVMKMDGMTIKENIIKVAISNSGPS 98 (100)
T ss_dssp ESSHHHHHHHHHHHTTEESSSCEEEEEECCCCSC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 7899999999999999999999999999976543
No 244
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=9.6e-06 Score=45.44 Aligned_cols=35 Identities=26% Similarity=0.412 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.|||..+.|++|.|.|+.+.+..
T Consensus 68 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 102 (109)
T 1x4a_A 68 FEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGT 102 (109)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEECCCCCCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCCC
Confidence 78999999999999999999999999999866544
No 245
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=1.2e-05 Score=45.42 Aligned_cols=36 Identities=19% Similarity=0.359 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~ 36 (125)
|.+.++|.+|+..|||..+.|++|.|.|+.+.+...
T Consensus 74 f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~~~ 109 (115)
T 2cpx_A 74 FPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQRS 109 (115)
T ss_dssp CSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSCCC
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCCCC
Confidence 789999999999999999999999999998765543
No 246
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=1.1e-05 Score=44.73 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.+....
T Consensus 62 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cq3_A 62 FENSADADRAREKLHGTVVEGRKIEVNNATARVMT 96 (103)
T ss_dssp ESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCC
Confidence 78999999999999999999999999999866544
No 247
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=97.98 E-value=6.2e-06 Score=46.65 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|++.++|++|++.|||..+.|+.|+|.++...
T Consensus 74 F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 74 FPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp ESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 78999999999999999999999999998654
No 248
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.98 E-value=8.3e-06 Score=45.19 Aligned_cols=36 Identities=17% Similarity=0.352 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~ 36 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+.+...
T Consensus 62 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 97 (103)
T 2d9p_A 62 FSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQ 97 (103)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCCCC
T ss_pred ECCHHHHHHHHHHhCCCEeCCcEEEEEEecccccCC
Confidence 789999999999999999999999999998765543
No 249
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.98 E-value=7.3e-05 Score=40.88 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=46.0
Q ss_pred CCCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHh
Q 033181 41 ETDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESL 105 (125)
Q Consensus 41 ~~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 105 (125)
..++.+++ +.|..+-..||.++|++||.+ .+..+-+ ..||+.|.+++.|..|+..+
T Consensus 14 ~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 14 KRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHH
T ss_pred CCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhc
Confidence 35577888 999999999999999999843 3455544 26999999999999999966
No 250
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.97 E-value=0.00028 Score=38.99 Aligned_cols=72 Identities=25% Similarity=0.246 Sum_probs=56.4
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhcc-----CCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecCeEEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQE-----YGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEGRAMR 116 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~-----~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 116 (125)
....|.|.|+|+.++++.|.-+|.. -|.+..+.... +.|+|+|.+...|++.+.. ..+.|.+..|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEEE
Confidence 4568999999999999999999976 24666665432 3699999999999999882 26788888888
Q ss_pred EEEccC
Q 033181 117 VSLAQG 122 (125)
Q Consensus 117 v~~~~~ 122 (125)
|...-+
T Consensus 78 V~P~~~ 83 (104)
T 2dhx_A 78 LRPAPP 83 (104)
T ss_dssp EEECCC
T ss_pred EEcCCC
Confidence 876544
No 251
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=97.96 E-value=1.6e-05 Score=45.22 Aligned_cols=34 Identities=18% Similarity=0.451 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|++|++.|||..+.|+.|.|.++.+...
T Consensus 55 F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 55 FENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp CSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 7899999999999999999999999999976543
No 252
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=1.3e-05 Score=44.85 Aligned_cols=35 Identities=17% Similarity=0.330 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|.|.|+.+....
T Consensus 68 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 102 (109)
T 1x4g_A 68 FSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 102 (109)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEECCCCCCSS
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCCC
Confidence 78999999999999999999999999999766543
No 253
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.95 E-value=1.5e-05 Score=44.85 Aligned_cols=35 Identities=26% Similarity=0.507 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.+....
T Consensus 72 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 72 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp BSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred ECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 78999999999999999999999999999866544
No 254
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.94 E-value=5.5e-06 Score=46.37 Aligned_cols=30 Identities=27% Similarity=0.716 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|+++++|.+|++.|||+.+.|++|.+.++.
T Consensus 66 f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 66 FTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 789999999999999999999999999875
No 255
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=97.94 E-value=1.1e-05 Score=45.35 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|+.|.|.|+.+.+.
T Consensus 72 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (108)
T 2jvo_A 72 FEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAK 105 (108)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEESCSCCC-
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCC
Confidence 7899999999999999999999999999976544
No 256
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.93 E-value=8.4e-06 Score=45.07 Aligned_cols=35 Identities=20% Similarity=0.462 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.++++|.+|++.|||..+.|++|+|.++.+....
T Consensus 61 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 95 (102)
T 1x5s_A 61 FENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDN 95 (102)
T ss_dssp CSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 78999999999999999999999999999765543
No 257
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.93 E-value=1.3e-05 Score=43.36 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+. |||..+.|+.|.|.++.+.+
T Consensus 57 f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 57 FSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp CSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred ECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 789999999999 99999999999999997653
No 258
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.93 E-value=1.2e-05 Score=43.88 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|+|.++.+....
T Consensus 54 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 88 (95)
T 2dnz_A 54 FSDSECARRALEQLNGFELAGRPMRVGHVTERLDG 88 (95)
T ss_dssp ESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCC
T ss_pred ECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCC
Confidence 78999999999999999999999999999765543
No 259
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=97.93 E-value=7.2e-06 Score=43.73 Aligned_cols=30 Identities=37% Similarity=0.675 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|.++++|.+|++.|||..+.|++|+|+|++
T Consensus 56 f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 56 FELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 789999999999999999999999999873
No 260
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=97.92 E-value=1.3e-05 Score=43.11 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|.++++|.+|++.|||..+.|++|+|+++...
T Consensus 47 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 47 LLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred ECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 78999999999999999999999999998543
No 261
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.92 E-value=7.4e-06 Score=45.85 Aligned_cols=31 Identities=26% Similarity=0.515 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|+++++|.+|+..|||+.+.|++|.+.++..
T Consensus 63 f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 63 FERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred ECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 7899999999999999999999999999853
No 262
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.92 E-value=1.6e-05 Score=45.84 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhcCCccccC--eEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~--~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.|||..|.| +.|+|+|+++....
T Consensus 69 f~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 69 FESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp ESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred ECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcce
Confidence 689999999999999999987 69999999866543
No 263
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=97.91 E-value=7.3e-06 Score=47.46 Aligned_cols=33 Identities=30% Similarity=0.603 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|++.++|.+|+..|||..+.|++|+|.|+....
T Consensus 79 F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~ 111 (127)
T 2a3j_A 79 FATQESAQAFVEAFQGYPFQGNPLVITFSETPQ 111 (127)
T ss_dssp ESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCC
T ss_pred ECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcc
Confidence 789999999999999999999999999997654
No 264
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=9.4e-06 Score=44.50 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCcccc--CeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYL--GRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~--~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|++.|||..+. |++|.|.|+.+.+
T Consensus 60 f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 60 YESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp ESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred ECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 68999999999999999999 9999999997654
No 265
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=97.91 E-value=9.1e-06 Score=44.46 Aligned_cols=35 Identities=20% Similarity=0.421 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++.|||..+.|+.|.|.++.+.+..
T Consensus 51 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 51 FRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGG
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCC
Confidence 68999999999999999999999999999766543
No 266
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.91 E-value=2.1e-05 Score=44.02 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCccccC-----eEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLG-----RILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~-----~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.|||..+.| +.|.|.++.+.+..
T Consensus 57 f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~~ 96 (108)
T 1x4c_A 57 FVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSPS 96 (108)
T ss_dssp ESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSCC
T ss_pred ECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCCC
Confidence 789999999999999999999 99999999875543
No 267
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.91 E-value=1.5e-05 Score=44.96 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+..
T Consensus 71 f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 71 FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 789999999999999999999999999987543
No 268
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.91 E-value=9e-06 Score=46.20 Aligned_cols=30 Identities=17% Similarity=0.452 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|+++++|.+|++.|||+.+.|+.|.+.|+.
T Consensus 62 f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 62 CPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp CSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 789999999999999999999999999874
No 269
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.90 E-value=1.3e-05 Score=44.51 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=31.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+.+..
T Consensus 64 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 98 (105)
T 1x5u_A 64 FLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNKN 98 (105)
T ss_dssp ESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSCC
T ss_pred ECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCcC
Confidence 78999999999999999999999999999876544
No 270
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=97.89 E-value=1.1e-05 Score=44.08 Aligned_cols=33 Identities=9% Similarity=0.405 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|++|.|.|+.+.+
T Consensus 58 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (97)
T 1nu4_A 58 FKEVSSATNALRSMQGFPFYDKPMRIQYAKTDS 90 (97)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSSCC
T ss_pred eCCHHHHHHHHHHhCCCEECCcEEEEEEccCCC
Confidence 689999999999999999999999999997654
No 271
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.89 E-value=1.3e-05 Score=43.74 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+..
T Consensus 60 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 60 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp ESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 789999999999999999999999999997554
No 272
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.89 E-value=7.8e-06 Score=45.32 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|.|.++...+..
T Consensus 62 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dnm_A 62 FHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRD 96 (103)
T ss_dssp ESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCCSC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEECCcCCCC
Confidence 67899999999999999999999999999865544
No 273
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.89 E-value=1.2e-05 Score=44.10 Aligned_cols=32 Identities=16% Similarity=0.363 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|++.|||..+.|++|+|+++...
T Consensus 64 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 64 FESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp ESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred ECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 78999999999999999999999999998643
No 274
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=97.88 E-value=9.8e-06 Score=48.86 Aligned_cols=35 Identities=20% Similarity=0.279 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhcCCccccC--eEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLG--RILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~--~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.|||..|.| +.|+|+|+++....
T Consensus 91 F~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~l~ 127 (164)
T 1sjr_A 91 YADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSLN 127 (164)
T ss_dssp ESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSSCC
T ss_pred ECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCccc
Confidence 789999999999999999965 99999999876433
No 275
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.88 E-value=1.2e-05 Score=43.70 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|+++++|.+|+..|||..+.|++|.|.|++.
T Consensus 64 f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 64 FENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp ESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 7899999999999999999999999999864
No 276
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.87 E-value=1.9e-05 Score=43.95 Aligned_cols=35 Identities=20% Similarity=0.324 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhc-CCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENL-DGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~-~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..| ||..+.|++|.|.|+.+.+..
T Consensus 65 f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~~~ 100 (107)
T 2cph_A 65 FITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTV 100 (107)
T ss_dssp ESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCCCC
T ss_pred ECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCCCC
Confidence 78999999999999 999999999999999876544
No 277
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=97.86 E-value=2.2e-05 Score=45.00 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|+|+++......
T Consensus 83 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 117 (124)
T 2kt5_A 83 FERRADALKAMKQYKGVPLDGRPMDIQLVASQIDL 117 (124)
T ss_dssp ESSHHHHHHHHHHHTTEESSSCEEEEEEECCTTCC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCCC
Confidence 78999999999999999999999999999765444
No 278
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=97.86 E-value=1.2e-05 Score=45.39 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|++.++|.+|++.|||..+.|+.|.|.++...
T Consensus 55 f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 55 FTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 78999999999999999999999999998643
No 279
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.86 E-value=1.3e-05 Score=43.81 Aligned_cols=32 Identities=16% Similarity=0.313 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+.
T Consensus 61 f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 61 YSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp ESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 68999999999999999999999999999765
No 280
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=97.85 E-value=1.6e-05 Score=44.63 Aligned_cols=34 Identities=29% Similarity=0.525 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|++.++|.+|+..|||..+.|+.|.|.++...+.
T Consensus 69 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 69 YSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp CSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred ECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 7899999999999999999999999999975443
No 281
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=97.85 E-value=1.5e-05 Score=43.81 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+..|||..+.|++|.|+++...
T Consensus 64 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 64 FDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp ESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred ECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 78999999999999999999999999998654
No 282
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=1.5e-05 Score=43.84 Aligned_cols=34 Identities=24% Similarity=0.270 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|++.|||..+.|++|.|.|+.+...
T Consensus 58 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 58 LETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred ECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 7899999999999999999999999999976543
No 283
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.82 E-value=1.7e-05 Score=43.88 Aligned_cols=33 Identities=36% Similarity=0.575 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|++.|||..+.|+.|.|.++.+..
T Consensus 57 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 57 YQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp CSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred ECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 789999999999999999999999999997654
No 284
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=97.81 E-value=1.1e-05 Score=43.75 Aligned_cols=34 Identities=15% Similarity=0.245 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.+...
T Consensus 55 f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 88 (92)
T 2dgv_A 55 FESPEVAERACRMMNGMKLSGREIDVRIDRNASG 88 (92)
T ss_dssp ESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSS
T ss_pred ECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCC
Confidence 6899999999999999999999999999976543
No 285
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=97.81 E-value=1.5e-05 Score=43.43 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|.++++|.+|++.|||..+.|++|+|+++.
T Consensus 64 f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 64 FESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred ECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 689999999999999999999999999875
No 286
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.81 E-value=3.2e-05 Score=43.52 Aligned_cols=34 Identities=15% Similarity=0.350 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.....
T Consensus 63 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 96 (114)
T 2do0_A 63 FEQSIEAVQAISMFNGQLLFDRPMHVKMDERALP 96 (114)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEECSCCCC
T ss_pred ECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCCC
Confidence 7899999999999999999999999999865433
No 287
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.81 E-value=2.8e-05 Score=43.03 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|+ .|||..+.|++|.|.++.+.+..
T Consensus 63 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 63 FDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp ESSHHHHHHHG-GGTTCEETTEECEEEECCCCCCC
T ss_pred ECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCCC
Confidence 78999999999 89999999999999999766543
No 288
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.81 E-value=2.8e-05 Score=42.71 Aligned_cols=34 Identities=9% Similarity=0.280 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+. |||..+.|++|.|.++.+.+..
T Consensus 59 f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 59 FEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDSK 92 (99)
T ss_dssp ESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCCC
T ss_pred ECCHHHHHHHHH-hCCCEECCeEEEEEECCCCccc
Confidence 789999999999 9999999999999999866554
No 289
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=97.80 E-value=1.5e-05 Score=43.96 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|++ |||..+.|+.|.|.++.+.+..
T Consensus 65 f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~~ 98 (101)
T 1fj7_A 65 FESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDGT 98 (101)
T ss_dssp ESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCCS
T ss_pred ECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCCC
Confidence 789999999999 9999999999999999765543
No 290
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=97.80 E-value=1.8e-05 Score=43.92 Aligned_cols=35 Identities=29% Similarity=0.427 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHhcCCccccC---eEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLG---RILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~---~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.| ++|.|.|+.+.+.+
T Consensus 63 f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 63 FSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp ESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred eCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 789999999999999999988 99999999876554
No 291
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.80 E-value=1.3e-05 Score=45.80 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|+++++|.+|+..|||+.+.|++|.+.++.
T Consensus 78 F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 78 FSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 789999999999999999999999999874
No 292
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.79 E-value=1.8e-05 Score=43.47 Aligned_cols=33 Identities=9% Similarity=0.406 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeE----EEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRI----LRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~----i~v~~~~~~~ 33 (125)
|.+.++|++|++.|||..+.|+. |+|.|+.+..
T Consensus 59 f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 59 FADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp CSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred eCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 78999999999999999999999 9999997654
No 293
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=97.79 E-value=2.2e-05 Score=44.98 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|+..|||..+.|+.|.|.|+.+....
T Consensus 80 f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 80 YEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp CSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 78999999999999999999999999999766443
No 294
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=97.78 E-value=4.7e-05 Score=44.39 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~ 36 (125)
|.+.++|.+|+..|||..+.|+.|+|.++.......
T Consensus 91 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 126 (139)
T 1u6f_A 91 FQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQRP 126 (139)
T ss_dssp ESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 789999999999999999999999999998765543
No 295
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=97.78 E-value=2.8e-05 Score=45.63 Aligned_cols=35 Identities=17% Similarity=0.446 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+....
T Consensus 99 f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 99 LPNEKAAAKALKEANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp CSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC-
T ss_pred eCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCc
Confidence 78999999999999999999999999999765443
No 296
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=0.00038 Score=39.59 Aligned_cols=70 Identities=17% Similarity=0.228 Sum_probs=55.2
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCceecC-eEEEEEE
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGVELEG-RAMRVSL 119 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~ 119 (125)
..+-|.|-+.|+.. .+.+...|++||.|.+.... . ...+-.|.|.++.+|++||. .||..|+| ..|-|..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~----~--~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS----N--TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC----S--SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC----C--CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 35667788999885 46688899999999987652 1 23489999999999999999 59999974 6666655
No 297
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=97.77 E-value=1.7e-05 Score=43.13 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|.++++|.+|+..|||..+.|++|.|.++..
T Consensus 64 f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 64 FKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp ESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred ECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 7899999999999999999999999999853
No 298
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=2.2e-05 Score=42.73 Aligned_cols=34 Identities=24% Similarity=0.242 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+. |||..+.|+.|.|.++...+..
T Consensus 52 f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~~~ 85 (94)
T 2e5g_A 52 MGDVGAREAVLS-QSQHSLGGHRLRVRPREQKEFQ 85 (94)
T ss_dssp ESSHHHHHHHHT-CSCCEETTEECCCBCSCCSCCC
T ss_pred ECCHHHHHHHHh-cCCeEECCEEEEEEECCcCCCC
Confidence 689999999999 9999999999999988655443
No 299
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=3.4e-05 Score=42.79 Aligned_cols=34 Identities=15% Similarity=0.338 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+ .|||..+.|+.|.|.++.+.+..
T Consensus 64 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 64 FEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQDK 97 (104)
T ss_dssp ESSHHHHHHHH-GGGTCEETTEECEEEECCCCCCC
T ss_pred ECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCCC
Confidence 78999999999 89999999999999999876544
No 300
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=1.8e-05 Score=42.85 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|+. |||..+.|+.|+|+.+++
T Consensus 56 F~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 56 FLEGSSALNVLS-LNGKELLNRTITIALKSP 85 (91)
T ss_dssp ESSHHHHHHGGG-GTTCEETTEEEEEEECCC
T ss_pred ECChHHHHHHHh-cCCeEeCCeEEEEEeCCC
Confidence 688999999999 999999999999998864
No 301
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.74 E-value=2.3e-05 Score=44.15 Aligned_cols=31 Identities=6% Similarity=0.059 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|+..|||..+.|++|.|.|+..
T Consensus 53 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 53 FLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp ESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred eCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 7899999999999999999999999999864
No 302
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.74 E-value=5.2e-05 Score=42.42 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHhcC------CccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLD------GREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~------g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|| |..+.|++|.|.++.+.+..
T Consensus 64 f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 64 FMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp ESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCCC
T ss_pred ECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCccC
Confidence 789999999999999 99999999999999866544
No 303
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=2.6e-05 Score=43.22 Aligned_cols=35 Identities=6% Similarity=0.100 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHhcCCcc-ccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGRE-YLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~-~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||.. +.|++|.|.++.+....
T Consensus 58 f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 58 FTDELEQKRALTECQGAVGLGSKPVRLSVAIPKASR 93 (104)
T ss_dssp ESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCCSC
T ss_pred ECCHHHHHHHHHHccCCcccCCEeEEEEEccCCCcC
Confidence 789999999999999999 99999999999765544
No 304
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=97.73 E-value=2e-05 Score=43.73 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=29.1
Q ss_pred CCCHHHHHHHHHhcCCcc--ccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGRE--YLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~--~~~~~i~v~~~~~~~ 33 (125)
|++.++|.+|++.|||.. +.|++|+|+||+.++
T Consensus 64 f~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 64 FEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp ESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred ECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 689999999999999876 789999999997653
No 305
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.72 E-value=7.3e-05 Score=40.98 Aligned_cols=56 Identities=23% Similarity=0.325 Sum_probs=46.3
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 106 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 106 (125)
.++.+++ +.|.++-..||.++|++|| ...+..+-+ ..||+.|.+++.|..|+..+.
T Consensus 5 R~HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 5 SDHVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD-------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET-------TEEEEEEEEECHHHHHHHHHT
T ss_pred CCeEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 3467788 9999999999999999998 445555544 269999999999999999764
No 306
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=97.72 E-value=2.6e-05 Score=42.80 Aligned_cols=31 Identities=19% Similarity=0.414 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHhcCCc----cccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGR----EYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~----~~~~~~i~v~~~~~ 31 (125)
|.++++|.+|++.|||. .+.|++|.|+|++.
T Consensus 60 f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 60 LSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred ECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 78999999999999996 48899999999864
No 307
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=97.70 E-value=1.2e-05 Score=44.04 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+...
T Consensus 52 f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 52 FDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred ECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 7899999999999999999999999999865543
No 308
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=97.68 E-value=2.8e-05 Score=41.72 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+ .|||..+.|++|.|.++.+.
T Consensus 55 f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 55 FSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp ESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred ECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 68899999999 89999999999999998754
No 309
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=97.68 E-value=2.5e-05 Score=43.52 Aligned_cols=32 Identities=19% Similarity=0.234 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHhcCCccccCe-EEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGR-ILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~-~i~v~~~~~~ 32 (125)
|.+.++|.+|+..|||..+.|+ +|.|.++...
T Consensus 68 f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 68 YASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp ECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred ECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 6789999999999999999998 9999998644
No 310
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=2.7e-05 Score=43.43 Aligned_cols=35 Identities=9% Similarity=0.140 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhcCCc--cccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGR--EYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~--~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.|++. .+.|++|+|+|+...+..
T Consensus 58 f~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~~~ 94 (104)
T 1wex_A 58 FENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT 94 (104)
T ss_dssp ESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSSCC
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEEccCcccc
Confidence 78999999999988764 589999999999866544
No 311
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.67 E-value=2.4e-05 Score=41.64 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHhc-CCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENL-DGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~-~g~~~~~~~i~v~~~~ 30 (125)
|++.++|.+|+..| ||..+.|++|.|+|++
T Consensus 55 f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 55 FATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp ESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred ECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 68999999999999 9999999999999873
No 312
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.67 E-value=5e-05 Score=42.39 Aligned_cols=35 Identities=9% Similarity=0.112 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHhcC--CccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLD--GREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~--g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|| +..+.|++|.|.|+.+.+..
T Consensus 59 f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~~ 95 (109)
T 2dis_A 59 YESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDV 95 (109)
T ss_dssp ESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCST
T ss_pred ecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCCc
Confidence 789999999999996 58999999999999866543
No 313
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=97.65 E-value=2.7e-05 Score=43.01 Aligned_cols=31 Identities=13% Similarity=0.204 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhcCCccccC-eEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLG-RILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~-~~i~v~~~~~ 31 (125)
|+++++|.+|++.|||..+.| ++|.|.++.+
T Consensus 61 f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 61 CGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred ECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 789999999999999999999 9999998853
No 314
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=97.64 E-value=5.4e-05 Score=45.06 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|+.|.|.|+.+....
T Consensus 88 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 122 (156)
T 1h2v_Z 88 YYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEG 122 (156)
T ss_dssp ESSHHHHHHHHHHTTTSEETTEECEEEEESCCCTT
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCc
Confidence 78999999999999999999999999999765443
No 315
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=97.63 E-value=5.7e-05 Score=41.93 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=30.9
Q ss_pred CCCHHHHHHHHHhcCCccc---cCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREY---LGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~---~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+ .|++|.|.++.+.+..
T Consensus 62 f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~~ 99 (106)
T 2dgp_A 62 YCERESALKAQSALHEQKTLPGMNRPIQVKPADSESRG 99 (106)
T ss_dssp ESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSCC
T ss_pred ECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccccc
Confidence 6899999999999999887 8899999999866544
No 316
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=97.62 E-value=2.9e-05 Score=44.57 Aligned_cols=34 Identities=24% Similarity=0.512 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|+.|.|.|+.+...
T Consensus 71 f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 71 YETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp ESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred ECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 7899999999999999999999999999965443
No 317
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.62 E-value=3.4e-05 Score=42.94 Aligned_cols=34 Identities=32% Similarity=0.456 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHhcCCc--cccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGR--EYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~--~~~~~~i~v~~~~~~~~ 34 (125)
|++.++|.+|++.||+. .+.|++|.|+|+...+.
T Consensus 59 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~ 94 (102)
T 1x4d_A 59 MATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKR 94 (102)
T ss_dssp ESSHHHHHHHHHHHHHSCCEETTEECEEEEECCCTT
T ss_pred ECCHHHHHHHHHHHcCCCceECCcEEEEEECCCCCC
Confidence 78999999999999864 49999999999985543
No 318
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=97.59 E-value=1.6e-05 Score=42.92 Aligned_cols=34 Identities=26% Similarity=0.489 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.+ |.+|+..|||..+.|++|.|+++.+....
T Consensus 50 f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~~~ 83 (90)
T 2ki2_A 50 MQEES-VSEAIAKLDNTDFMGRTIRVTEANPKKSL 83 (90)
T ss_dssp ECTTH-HHHHHHTSCSSCCSSSSCSEEEC------
T ss_pred ECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCCCC
Confidence 67889 99999999999999999999999765433
No 319
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.58 E-value=6.6e-05 Score=42.60 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhcCCccc-----cCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREY-----LGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~-----~~~~i~v~~~~~~ 32 (125)
|++.++|++|++.|||..+ .|++|.|.|+..-
T Consensus 70 f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 70 YRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp ESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred ECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 7899999999999999988 6889999998643
No 320
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=97.55 E-value=4.8e-05 Score=39.50 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEecc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~ 29 (125)
|.+.++|++|++ +||..+.|++|.|+++
T Consensus 48 f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 48 FESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred ECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 789999999998 9999999999999875
No 321
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.50 E-value=7e-05 Score=41.85 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHhcCC--ccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDG--REYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g--~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|++.|++ ..+.|++|+|.|+.+.+..
T Consensus 59 F~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~~~ 95 (105)
T 1sjq_A 59 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELK 95 (105)
T ss_dssp ESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSSCC
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCCCC
Confidence 7899999999998864 7899999999999765544
No 322
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=96.63 E-value=1.5e-05 Score=45.17 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+..|||..+.|++|.|.++.+.+..
T Consensus 64 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 64 FDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 78899999999999999999999999999766544
No 323
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=97.47 E-value=8.8e-05 Score=44.36 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|+..|||..+.|+.|.|.++.+
T Consensus 106 f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 106 VASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp ESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred ECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 7899999999999999999999999999863
No 324
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.47 E-value=0.00015 Score=41.38 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhcCC--ccccCeEEEEeccCCCCCCC
Q 033181 1 MSTVEDCNAVIENLDG--REYLGRILRVNFSDKPKPKL 36 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g--~~~~~~~i~v~~~~~~~~~~ 36 (125)
|++.++|.+|++.+++ ..+.|++|+|.|+...+...
T Consensus 74 F~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~~~~ 111 (119)
T 2ad9_A 74 MNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKELKT 111 (119)
T ss_dssp CSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSSCCC
T ss_pred ECCHHHHHHHHHHhccCCceECCeEEEEEEccCCCCCc
Confidence 7899999999999874 68999999999997665443
No 325
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.46 E-value=0.0002 Score=39.64 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHhc--CCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENL--DGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~--~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|+..| ++..+.|++|.|.|+...+..
T Consensus 58 f~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~~~ 94 (101)
T 2cq1_A 58 LATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELK 94 (101)
T ss_dssp ESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSSCC
T ss_pred ECCHHHHHHHHHHhccCCceECCcEEEEEEcCcccCc
Confidence 78999999999976 467899999999999865544
No 326
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.42 E-value=0.0002 Score=40.41 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+|+..+++ .+.|++|.|.++....
T Consensus 66 f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~~ 97 (116)
T 2cqd_A 66 MADRAAAERACKDPNP-IIDGRKANVNLAYLGA 97 (116)
T ss_dssp ESSHHHHHHHHTCSSC-EETTEECEEEESTTTC
T ss_pred ECCHHHHHHHHHhCCC-cCCCEEEEEEEcccCC
Confidence 7899999999999998 8999999999996543
No 327
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.39 E-value=0.00028 Score=39.79 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=30.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+.. +|..+.|+.|.|.++.+....
T Consensus 76 f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 76 FSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp CSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCCC
T ss_pred eCCHHHHHHHHHh-CCcEECCEEEEEEECCCCccC
Confidence 7899999999997 999999999999999766544
No 328
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.38 E-value=0.00038 Score=38.14 Aligned_cols=69 Identities=9% Similarity=0.082 Sum_probs=50.7
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCC--CCceeEEEEEecCHHHHHHHHHHhCCceec
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGES--GRSRGYGFVCYSTKAEMETALESLNGVELE 111 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~--~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~ 111 (125)
+-.|-|+.||+.++++++.+.+++.-............+ ......|||.|.+.++...-...++|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 346889999999999999988887655433332222111 122356899999999999999999998873
No 329
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=97.36 E-value=9.6e-05 Score=44.44 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|.+.++|.+|+..|||..+.|++|.|.|+.+...
T Consensus 121 f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 121 YETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp ESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred ECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 7889999999999999999999999999975543
No 330
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.35 E-value=0.00015 Score=40.19 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=30.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|.+|+.. ||..+.|+.|.|.++.+....
T Consensus 65 f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 65 FKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGMQ 98 (105)
T ss_dssp ESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSCC
T ss_pred ECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCCC
Confidence 7889999999998 999999999999999866544
No 331
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=97.34 E-value=4.3e-05 Score=40.38 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=24.0
Q ss_pred CCCHHHHHHHHHhcCCccccCe-EEEE
Q 033181 1 MSTVEDCNAVIENLDGREYLGR-ILRV 26 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~-~i~v 26 (125)
|+++++|.+|+..|||..+.|+ +|+|
T Consensus 54 f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 54 YASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp ESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred ECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 6899999999999999999999 8876
No 332
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.30 E-value=0.00015 Score=41.00 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHhcCC--ccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDG--REYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g--~~~~~~~i~v~~~~~~~~ 34 (125)
|++.++|.+|++.||+ ..+.|++|+|+|+...+.
T Consensus 69 f~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~ 104 (112)
T 1x4f_A 69 METREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 104 (112)
T ss_dssp CSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSS
T ss_pred ECCHHHHHHHHHHhccCCceECCEEEEEEECccccc
Confidence 7899999999998864 569999999999975543
No 333
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.25 E-value=2.5e-05 Score=41.61 Aligned_cols=30 Identities=3% Similarity=0.088 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|.++++|.+|++.|||..+.|+.+++.+++
T Consensus 54 f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 54 FDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp ESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred ECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 689999999999999999999999888764
No 334
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=97.23 E-value=0.00021 Score=40.57 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=27.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|+. +||..+.|+.|+|.++..
T Consensus 68 F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 68 LESEDDVKLALK-KDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp BSSHHHHHHHGG-GTTEEETTEEEEEEEECH
T ss_pred ECCHHHHHHHHh-cCCCeECCeEEEEEECCH
Confidence 789999999999 999999999999998753
No 335
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.20 E-value=0.00014 Score=41.65 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|++.++|.+|+. |||..+.|+.|.|.++..
T Consensus 74 F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 74 FRNEADYKAALC-RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp BSSSHHHHHHHT-SCSBCSTTSCBEEEEECH
T ss_pred ECCHHHHHHHHH-hCCCeECCcEEEEEECCH
Confidence 789999999999 999999999999998853
No 336
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=97.20 E-value=0.00023 Score=41.57 Aligned_cols=29 Identities=17% Similarity=0.202 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|++.++|++|++ +||..+.|+.|.|.++.
T Consensus 95 F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 95 LGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp CSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred ECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 789999999999 99999999999999875
No 337
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=97.20 E-value=0.00033 Score=39.57 Aligned_cols=32 Identities=19% Similarity=0.324 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeE-----EEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRI-----LRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~-----i~v~~~~~~ 32 (125)
|++.++|.+|++.|||..+.|+. |++..+.+.
T Consensus 58 f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~~ 94 (115)
T 3beg_B 58 FVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPR 94 (115)
T ss_dssp ESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC--
T ss_pred ECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCCC
Confidence 78999999999999999999988 677665543
No 338
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.20 E-value=0.00042 Score=38.90 Aligned_cols=29 Identities=10% Similarity=0.113 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|++.++|.+|+ .+||..+.|+.|.|..+.
T Consensus 63 F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 63 FLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp CSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred ECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 78999999999 599999999999998774
No 339
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=97.18 E-value=0.00021 Score=41.27 Aligned_cols=34 Identities=21% Similarity=0.413 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhcCCc----cccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGR----EYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~----~~~~~~i~v~~~~~~~~~ 35 (125)
|.+. +|.+|+..|||. .+.|+.|.|.++.+.+..
T Consensus 74 f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 74 LSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSKRD 111 (131)
T ss_dssp CCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSCCC
T ss_pred ECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCCCC
Confidence 7788 999999999999 999999999999766443
No 340
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.17 E-value=0.00065 Score=39.20 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=53.2
Q ss_pred CcEEEEcCCCccCCHHHHHHHhccCCceeEEE-Eeec--------CCCC-----CceeEEEEEecCHHHHHHHHHHhCCc
Q 033181 43 DFKLFVGNLSWSVTTESLTQAFQEYGNVVGAR-VLYD--------GESG-----RSRGYGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 43 ~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~-~~~~--------~~~~-----~~~g~~fv~f~~~~~a~~a~~~l~~~ 108 (125)
.+.|.|=+.|++.. ..+-+.|++||.|.+-. .... .... ....|-.|.|.++.+|.+||. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 34566778887765 45777899999887621 1100 0000 124578999999999999999 6999
Q ss_pred eecCeEEEEEEcc
Q 033181 109 ELEGRAMRVSLAQ 121 (125)
Q Consensus 109 ~~~g~~i~v~~~~ 121 (125)
.|+|.-|-|.+..
T Consensus 85 ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 85 VFNGVLLGVIPYT 97 (132)
T ss_dssp EETTEECEEEECC
T ss_pred EeCcEEEEEEECC
Confidence 9999888777654
No 341
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.17 E-value=0.00014 Score=40.88 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=28.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+ .|||..+.|+.|.|.++.+.
T Consensus 74 f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 74 FCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp ESCGGGHHHHH-HHTTEEETTEEEEEEEHHHH
T ss_pred eCcHHHHHHHH-HcCCCEeCCeEEEEEecCCC
Confidence 68899999999 89999999999999998654
No 342
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=97.16 E-value=0.00019 Score=43.73 Aligned_cols=32 Identities=13% Similarity=0.232 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|.+.++|.+|+..|||..+.|++|.|.|+...
T Consensus 136 F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~ 167 (177)
T 2f3j_A 136 FERRADALKAMKQYKGVPLDGRPMDIQLVASQ 167 (177)
T ss_dssp ESCHHHHHHHHHHSTTCBCSSSBCEEEEESSG
T ss_pred eCCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 78999999999999999999999999998654
No 343
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.14 E-value=0.00021 Score=37.09 Aligned_cols=28 Identities=7% Similarity=0.127 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEecc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~ 29 (125)
|.+.++|.+|+..++ ..+.|++|.|+++
T Consensus 49 f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 49 FMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 789999999999999 9999999999886
No 344
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.14 E-value=0.00027 Score=39.11 Aligned_cols=32 Identities=19% Similarity=0.221 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|++.++|.+|+. +|+..+.++.|.|.++....
T Consensus 62 F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 62 FATHEDAVAAMA-KDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp CSSSHHHHHHHT-TSSCCSSSSCCEEEEECCCC
T ss_pred ECCHHHHHHHHH-hCCCeECCcEEEEEECCCCC
Confidence 789999999995 89999999999999886554
No 345
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.01 E-value=0.00055 Score=38.52 Aligned_cols=31 Identities=13% Similarity=0.082 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKP 32 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~ 32 (125)
|++.++|.+|+.. ||..+.|+.|.|.++.+.
T Consensus 64 F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 64 FKNEDDARKSERL-HRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp CSSHHHHHHHGGG-CSEEETTEEEEEEEECHH
T ss_pred ECCHHHHHHHHHh-CCCccCCeEEEEEECCHH
Confidence 7899999999996 999999999999998643
No 346
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=96.95 E-value=0.00027 Score=39.37 Aligned_cols=30 Identities=17% Similarity=0.114 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|.+.++|.+|+. +||..+.|+.|.|.++.+
T Consensus 62 F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 62 MESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp BSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred ECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 789999999999 999999999999998854
No 347
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.94 E-value=0.00051 Score=37.99 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|+++++|.+|+.. |+..+.|+.|.|.++...+
T Consensus 64 F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 64 FASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp ESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred ECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 7899999999997 9999999999999886544
No 348
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=96.92 E-value=0.0003 Score=44.63 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=28.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDK 31 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~ 31 (125)
|++.++|.+||+.|||..|.|+.|+|.++..
T Consensus 119 f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 119 VGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp ESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred ECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 7889999999999999999999999998853
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.90 E-value=0.00048 Score=44.05 Aligned_cols=33 Identities=12% Similarity=0.183 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHhcCCccc------------cCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREY------------LGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~------------~~~~i~v~~~~~~~ 33 (125)
|.+.++|+.|++.|+|..+ .|+.|.|.|+...+
T Consensus 186 F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 186 FKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp ESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC---
T ss_pred eCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCCC
Confidence 6889999999999999999 89999999997553
No 350
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.89 E-value=0.0021 Score=35.25 Aligned_cols=33 Identities=12% Similarity=0.168 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|.+.++|.+|+. ++..+.|+.|.|.++.+....
T Consensus 64 f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 64 FTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp ESSHHHHHHHHH--SCEEETTEEEEEECCCTTCCC
T ss_pred ECCHHHHHHHHH--cCCeeCCeEEEEEecCCCCcC
Confidence 789999999999 478899999999999766544
No 351
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.83 E-value=0.00036 Score=38.72 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|++.++|.+|+. +||..+.|+.|.|.++.
T Consensus 59 F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 59 FDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp ESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred ECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 789999999999 99999999999999763
No 352
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=96.80 E-value=0.0013 Score=45.63 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.+.++|.+||..|||..|.|+.|.|.++.+..
T Consensus 151 F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 151 YEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred eccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 789999999999999999999999999997543
No 353
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=96.72 E-value=0.00061 Score=35.13 Aligned_cols=28 Identities=7% Similarity=0.001 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEecc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~ 29 (125)
|+++++|.+|++ +++..+.|++|.|+++
T Consensus 48 f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 48 FKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred ECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 789999999999 5889999999998865
No 354
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.70 E-value=0.002 Score=35.51 Aligned_cols=32 Identities=16% Similarity=0.332 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKP 34 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~ 34 (125)
|++.++|.+|++.+++ +.+++|+|.|+.+.+.
T Consensus 61 F~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 61 FATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp ESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred ECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 7899999999997554 6799999999876543
No 355
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=96.65 E-value=0.00051 Score=40.26 Aligned_cols=32 Identities=16% Similarity=0.218 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|++.++|.+|+ .+|+..+.++.|.|.++...+
T Consensus 93 F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 93 FATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred eCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 78999999999 699999999999999887554
No 356
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.65 E-value=0.0007 Score=39.89 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=36.9
Q ss_pred CCCceeEEEEEecCHHHHHHHHHHh-CCceecCeEEEEEEccC
Q 033181 81 SGRSRGYGFVCYSTKAEMETALESL-NGVELEGRAMRVSLAQG 122 (125)
Q Consensus 81 ~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~ 122 (125)
++...|+++++|.+.++|++|+..+ ||..++| .+.+.++.+
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4567899999999999999999999 9999999 999988765
No 357
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.38 E-value=0.007 Score=33.51 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|.++++|.+|-..|++..+.|+.+++.++.+..
T Consensus 53 F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 53 FSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp CSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred eCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 789999999999999999999999999987443
No 358
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.28 E-value=0.0033 Score=43.86 Aligned_cols=54 Identities=7% Similarity=0.144 Sum_probs=39.7
Q ss_pred cEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHH
Q 033181 44 FKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALE 103 (125)
Q Consensus 44 ~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~ 103 (125)
+.|+|. .|...++.+|.+.|++||.|..+.+-.. . ..|+.|+|.+.+++..++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~--~---g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES--F---GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS--S---SEEEEEECC---CCHHHHS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc--C---CeEEEEEeCCHHHHHHHHh
Confidence 579997 7999999999999999999998866533 2 3699999999998887754
No 359
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.20 E-value=0.0077 Score=35.57 Aligned_cols=33 Identities=9% Similarity=0.102 Sum_probs=26.3
Q ss_pred EEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 033181 73 ARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 107 (125)
Q Consensus 73 ~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 107 (125)
+.+.++ .+..+|++||+|.+.++|++|+..+++
T Consensus 3 ~kl~ln--~~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 3 YKLILN--GKTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEE--CSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEec--CccccchhHHHHHHHHhHHHHHHhhcc
Confidence 344544 235789999999999999999988775
No 360
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.08 E-value=0.003 Score=36.17 Aligned_cols=29 Identities=10% Similarity=0.022 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~ 30 (125)
|++.++|.+|+.. |+..+.++.|.|..+.
T Consensus 75 F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 75 FACEEYAQNALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp CSSHHHHHHHHTT-TTEESSSCEECCEEEC
T ss_pred ECCHHHHHHHHHh-CCCeeCCeEEEEEECC
Confidence 7899999999995 9999999999988764
No 361
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.83 E-value=0.032 Score=31.08 Aligned_cols=26 Identities=15% Similarity=0.106 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEec
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNF 28 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~ 28 (125)
|+++++|++|++.|+ .+.|+.+.+..
T Consensus 59 f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 59 FQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred ECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 789999999999883 24555555443
No 362
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=95.46 E-value=0.0018 Score=35.42 Aligned_cols=31 Identities=13% Similarity=0.266 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~ 33 (125)
|++.++|.+|+. +|..+.|+.|.|.++....
T Consensus 57 f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~ 87 (102)
T 2xs2_A 57 FYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQ 87 (102)
T ss_dssp ESSCCCHHHHTT--CCCEETTEECEEEEEEECC
T ss_pred ECCHHHHHHHHh--CCCeECCEEEEEEECCcCc
Confidence 678899999999 8999999999999886443
No 363
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.05 E-value=0.026 Score=31.61 Aligned_cols=27 Identities=15% Similarity=0.416 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEe
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVN 27 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~ 27 (125)
|++...|.+|.-.++|.+|.|+.|++.
T Consensus 69 f~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 69 FRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp CSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred EccchhhHHHHhhcCCeeecCeEEEec
Confidence 789999999999999999999999986
No 364
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.01 E-value=0.0053 Score=34.25 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=18.4
Q ss_pred CCCHHHHHHHHHhcCCcccc
Q 033181 1 MSTVEDCNAVIENLDGREYL 20 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~ 20 (125)
|.+.++|.+|+..|||..+.
T Consensus 73 f~~~~~a~~A~~~l~g~~~~ 92 (114)
T 1x5o_A 73 MESTEKCEAVIGHFNGKFIK 92 (114)
T ss_dssp ESCHHHHHHHHHHHBTCCCC
T ss_pred ECCHHHHHHHHHHhCCCEEc
Confidence 68999999999999999994
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=93.73 E-value=0.039 Score=37.16 Aligned_cols=30 Identities=30% Similarity=0.562 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHhcCCcccc---Ce--EEEEeccC
Q 033181 1 MSTVEDCNAVIENLDGREYL---GR--ILRVNFSD 30 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~---~~--~i~v~~~~ 30 (125)
|++.++|++|++.|||..+. |+ .+.+.|..
T Consensus 63 f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 63 YRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp ESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred ECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 68999999999999998883 44 67788774
No 366
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=93.57 E-value=0.074 Score=27.95 Aligned_cols=33 Identities=3% Similarity=0.016 Sum_probs=23.6
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPK 35 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~ 35 (125)
|++.++|++|+.. +..+.+++|.|.++.+....
T Consensus 49 f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 49 FADDQIAQSLCGE--DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCC
T ss_pred ECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCC
Confidence 7888998765331 34558999999999766544
No 367
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.49 E-value=0.4 Score=34.01 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=44.0
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCC
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNG 107 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~ 107 (125)
.++.++++ .|..+...+|.+.|+.||.+ .+...- ...+||.|.+.+.|..++..+..
T Consensus 439 R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 439 RDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred cCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 34566775 88899999999999999954 333322 23699999999999999998853
No 368
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=91.78 E-value=0.084 Score=30.60 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=21.4
Q ss_pred HHHHHH--hcCCccccCeEEEEeccC
Q 033181 7 CNAVIE--NLDGREYLGRILRVNFSD 30 (125)
Q Consensus 7 a~~A~~--~~~g~~~~~~~i~v~~~~ 30 (125)
|.+|+. .+||..|.|++|+|++-.
T Consensus 69 A~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 69 AFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHHhhhcCCeecCcEEEEEECc
Confidence 788999 789999999999999664
No 369
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=89.80 E-value=0.27 Score=25.97 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHhcCCccc--cCeEEEEeccCCCC
Q 033181 1 MSTVEDCNAVIENLDGREY--LGRILRVNFSDKPK 33 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~--~~~~i~v~~~~~~~ 33 (125)
|+++++|.+ ++|..+ .|+.|.|.++.+.+
T Consensus 55 F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 55 FADDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp ESCHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred ECCHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 678888873 456554 59999999987654
No 370
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=88.64 E-value=0.38 Score=27.75 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=23.2
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEecc
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~ 29 (125)
|+++.+|.+||. .||..+.|.-|=|.+-
T Consensus 69 Yds~~~A~rAL~-~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 69 YDNPASAVDALL-ENGAVFNGVLLGVIPY 96 (132)
T ss_dssp BSSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred cCCHHHHHHHHH-hCCeEeCcEEEEEEEC
Confidence 788999999999 8899998886666654
No 371
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.56 E-value=0.82 Score=25.23 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHhcCCccccCeEEEEeccCCCCCCCCCCCCCCcEEEEcCCCccCC
Q 033181 1 MSTVEDCNAVIENLDGREYLGRILRVNFSDKPKPKLPLYAETDFKLFVGNLSWSVT 56 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~~~i~v~~~~~~~~~~~~~~~~~~~l~i~~lp~~~~ 56 (125)
|.+.+.|++.++ -..+.+.+.+|.|....+. ....+.+.+|++.++
T Consensus 54 F~d~~va~rVL~-k~~H~L~~~~LsV~P~~~~---------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 54 FREPADAERVLA-QADHELHGAQLSLRPAPPR---------APARLLLQGLPPGTS 99 (104)
T ss_dssp ESSHHHHHHHHT-CSCCBSSSSBCEEEECCCC---------CCCCCCCCSCCCCCC
T ss_pred EcChHHHHHHhc-CCcceecCeEEEEEcCCCC---------CcceEeeecCCCCCC
Confidence 778889999988 3368889999998765432 334577888888764
No 372
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=82.79 E-value=0.74 Score=26.08 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=20.8
Q ss_pred CCCHHHHHHHHHhcCCccccC-eEEEEec
Q 033181 1 MSTVEDCNAVIENLDGREYLG-RILRVNF 28 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~~~~~-~~i~v~~ 28 (125)
|+++.+|++||. .||..+.+ -.|=|.+
T Consensus 66 Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 66 YQSKLQARKALS-KDGRIFGESIMIGVKP 93 (119)
T ss_dssp ESSHHHHHHHHT-TTTCEETTTEECEEEE
T ss_pred eCCHHHHHHHHH-hCCeEecCCEEEEEEE
Confidence 688999999999 79988875 4444443
No 373
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=81.45 E-value=1.8 Score=23.51 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=15.5
Q ss_pred cCCccccCeEEEEeccC
Q 033181 14 LDGREYLGRILRVNFSD 30 (125)
Q Consensus 14 ~~g~~~~~~~i~v~~~~ 30 (125)
|||..+.|+.|+|++..
T Consensus 77 ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 77 VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp GGGSEETTEEEEEECCC
T ss_pred cCCeeeCCeEEEEeccC
Confidence 99999999999998754
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=75.28 E-value=2.4 Score=24.03 Aligned_cols=29 Identities=0% Similarity=0.020 Sum_probs=22.7
Q ss_pred CCC-HHHHHHHHHhcC--CccccCeEEEEecc
Q 033181 1 MST-VEDCNAVIENLD--GREYLGRILRVNFS 29 (125)
Q Consensus 1 f~~-~~~a~~A~~~~~--g~~~~~~~i~v~~~ 29 (125)
|.+ +++|..|+..+| |..|.|..+.++..
T Consensus 62 f~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 62 FKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp ESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred ECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 567 689999999994 68888887777644
No 375
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=67.11 E-value=2.7 Score=21.29 Aligned_cols=34 Identities=15% Similarity=0.295 Sum_probs=25.3
Q ss_pred EEEEEecCHHHHHHHHHHhCCceecCeEEEEEEcc
Q 033181 87 YGFVCYSTKAEMETALESLNGVELEGRAMRVSLAQ 121 (125)
Q Consensus 87 ~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 121 (125)
++||+... ..+..++..|++..+.|+.+.+..++
T Consensus 42 ~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 42 ASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp CEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred cEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 78888754 56788889999999999999988764
No 376
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=43.91 E-value=12 Score=18.40 Aligned_cols=13 Identities=23% Similarity=0.363 Sum_probs=10.7
Q ss_pred CCCHHHHHHHHHh
Q 033181 1 MSTVEDCNAVIEN 13 (125)
Q Consensus 1 f~~~~~a~~A~~~ 13 (125)
|.|+|+|..|...
T Consensus 33 f~T~eeAA~AyD~ 45 (63)
T 1gcc_A 33 FETAEDAALAYDR 45 (63)
T ss_dssp ESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 7889999988764
No 377
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=41.50 E-value=8 Score=21.30 Aligned_cols=17 Identities=12% Similarity=0.302 Sum_probs=13.5
Q ss_pred CCCHHHHHHHHHhcCCc
Q 033181 1 MSTVEDCNAVIENLDGR 17 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g~ 17 (125)
|.|.++|.+|+..|...
T Consensus 71 Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 71 YASKEEAKKAVSTLPAD 87 (106)
Confidence 67888899998887644
No 378
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.58 E-value=37 Score=17.90 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.3
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCc
Q 033181 84 SRGYGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~~~ 108 (125)
.+||.||++....+...+++...|.
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTTE
T ss_pred cCCEEEEEEecchhHHHHHHCCCCc
Confidence 6899999999998888888877763
No 379
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=31.94 E-value=39 Score=15.76 Aligned_cols=16 Identities=13% Similarity=0.042 Sum_probs=12.1
Q ss_pred CCCHHHHHHHHHhcCC
Q 033181 1 MSTVEDCNAVIENLDG 16 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g 16 (125)
|.+.+.+.+|+...+|
T Consensus 23 F~~~~~~~~AL~~t~g 38 (53)
T 2knz_A 23 FINREANLQALIATGG 38 (53)
T ss_dssp CCCHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHhCC
Confidence 4567788888887776
No 380
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=31.53 E-value=88 Score=18.87 Aligned_cols=47 Identities=15% Similarity=0.179 Sum_probs=29.9
Q ss_pred EEEEcCCCc-c--------CCHHHHHHHh--ccCCceeEEEEeecCCCCCceeEEEEEecC
Q 033181 45 KLFVGNLSW-S--------VTTESLTQAF--QEYGNVVGARVLYDGESGRSRGYGFVCYST 94 (125)
Q Consensus 45 ~l~i~~lp~-~--------~~~~~l~~~f--~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~ 94 (125)
++.|.|+|. . .+...|.+.| +.|.++... .... ..-+.|++.|.|.+
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~-~l~~--~~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVR-PLWN--YLGHSGTAIVEFNK 71 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEE-EEEC--SSBEEEEEEEECCS
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeE-eccc--CCCCceeEEEEecC
Confidence 455667665 2 3446888866 889765533 3333 22367899999984
No 381
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=30.27 E-value=34 Score=17.23 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=10.0
Q ss_pred CCCHHHHHHHHHhc
Q 033181 1 MSTVEDCNAVIENL 14 (125)
Q Consensus 1 f~~~~~a~~A~~~~ 14 (125)
|.+.++|..++..|
T Consensus 11 ~~t~eea~~~F~~L 24 (71)
T 1uzc_A 11 WNTKEEAKQAFKEL 24 (71)
T ss_dssp CCSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 56777777777765
No 382
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=29.00 E-value=71 Score=17.02 Aligned_cols=57 Identities=12% Similarity=0.177 Sum_probs=43.0
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhC
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLN 106 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 106 (125)
.+|.+-|-|+|..+-..++.-.....|.--.+... .|.+.+.|.+......|+..|-
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHE
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHH
Confidence 45788899999998887777667777765555433 2469999999988888888664
No 383
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.51 E-value=41 Score=16.57 Aligned_cols=14 Identities=7% Similarity=-0.021 Sum_probs=11.0
Q ss_pred CHHHHHHHHHhcCC
Q 033181 3 TVEDCNAVIENLDG 16 (125)
Q Consensus 3 ~~~~a~~A~~~~~g 16 (125)
+.+.|.+|++.-+|
T Consensus 32 s~~qA~kALKat~~ 45 (63)
T 1wgn_A 32 SYECVLRAMKKKGE 45 (63)
T ss_dssp CHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHcCC
Confidence 46788999987766
No 384
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=26.78 E-value=55 Score=15.16 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHhcCC
Q 033181 1 MSTVEDCNAVIENLDG 16 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g 16 (125)
|.+.+.+.+|+...+|
T Consensus 24 F~~~~~~~~AL~~t~g 39 (52)
T 2jy5_A 24 FLNREANLQALIATGG 39 (52)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhCC
Confidence 4567778888887766
No 385
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=24.87 E-value=58 Score=14.67 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=11.0
Q ss_pred CCCHHHHHHHHHhcCC
Q 033181 1 MSTVEDCNAVIENLDG 16 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g 16 (125)
|.+.+.+.+|+..-+|
T Consensus 19 F~d~~~~~~AL~~~~g 34 (46)
T 2bwb_A 19 FFDFDRNVAALRRSGG 34 (46)
T ss_dssp CCCHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhCC
Confidence 4556667888887666
No 386
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.86 E-value=63 Score=14.71 Aligned_cols=14 Identities=14% Similarity=0.000 Sum_probs=10.2
Q ss_pred CHHHHHHHHHhcCC
Q 033181 3 TVEDCNAVIENLDG 16 (125)
Q Consensus 3 ~~~~a~~A~~~~~g 16 (125)
+.++|.+|++..+|
T Consensus 21 ~~~~a~~AL~~~~~ 34 (49)
T 1ify_A 21 ERERVVAALRASYN 34 (49)
T ss_dssp CHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHhCC
Confidence 56778888887655
No 387
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=23.57 E-value=24 Score=17.97 Aligned_cols=17 Identities=24% Similarity=0.397 Sum_probs=13.2
Q ss_pred CHHHHHHHhccCCceeE
Q 033181 56 TTESLTQAFQEYGNVVG 72 (125)
Q Consensus 56 ~~~~l~~~f~~~g~~~~ 72 (125)
+--|+++++.+||.+.+
T Consensus 4 tlYDVqQLLK~fG~~IY 20 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVY 20 (72)
T ss_dssp SHHHHHHHHHTTTCCCC
T ss_pred cHHHHHHHHHHCCEEEE
Confidence 34589999999997664
No 388
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=23.38 E-value=54 Score=13.78 Aligned_cols=14 Identities=7% Similarity=0.264 Sum_probs=10.1
Q ss_pred CHHHHHHHHHhcCC
Q 033181 3 TVEDCNAVIENLDG 16 (125)
Q Consensus 3 ~~~~a~~A~~~~~g 16 (125)
+.+.|.+|+...+|
T Consensus 17 ~~~~a~~AL~~~~~ 30 (40)
T 1z96_A 17 DPLEAAQALDAANG 30 (40)
T ss_dssp CHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHcCC
Confidence 45678888887665
No 389
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=23.30 E-value=1.4e+02 Score=18.41 Aligned_cols=58 Identities=12% Similarity=0.243 Sum_probs=39.8
Q ss_pred CHHHHHHHhccCCceeEEEEeecCCCCCceeEEEEEecCHHHHHHHHHHhCCc------eecCe-EEEEEEc
Q 033181 56 TTESLTQAFQEYGNVVGARVLYDGESGRSRGYGFVCYSTKAEMETALESLNGV------ELEGR-AMRVSLA 120 (125)
Q Consensus 56 ~~~~l~~~f~~~g~~~~~~~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~------~~~g~-~i~v~~~ 120 (125)
.++++...+..|.... +.++.-+-.-||++.+.......+..|.|- .++|. +|...+.
T Consensus 66 ~~~~I~~Ei~aYnpLi-------P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie~~v~l~v~~~~~V~ai~d 130 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLV-------PDGSNLKATLQIEYENETQRRAALARLVGIEDRVFLRVDDEAPVYAIAD 130 (194)
T ss_dssp SHHHHHHHHHHHGGGC-------CCSSEEEEEEEECCSSHHHHHHHHHHTTTGGGSEEEEETTSCCEECEEC
T ss_pred CHHHHHHHHHHhcccC-------CCCCcEEEEEEEEcCCHHHHHHHHHHhcCccceEEEEECCcceeeeecc
Confidence 4566666666665533 233444445699999999999999999983 46776 6776554
No 390
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=22.69 E-value=71 Score=15.30 Aligned_cols=16 Identities=13% Similarity=0.167 Sum_probs=11.4
Q ss_pred CCCHHHHHHHHHhcCC
Q 033181 1 MSTVEDCNAVIENLDG 16 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g 16 (125)
|.+.+.+.+|+...+|
T Consensus 29 F~d~~~~~~AL~~~~g 44 (58)
T 1wr1_B 29 FFDFDRNVAALRRSGG 44 (58)
T ss_dssp CCCHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHhCC
Confidence 5566677888887666
No 391
>2rf4_B DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=21.45 E-value=93 Score=16.41 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.8
Q ss_pred CCcEEEEcCCCccCCHHHHHHHhccC
Q 033181 42 TDFKLFVGNLSWSVTTESLTQAFQEY 67 (125)
Q Consensus 42 ~~~~l~i~~lp~~~~~~~l~~~f~~~ 67 (125)
....+++.+.+..++.++..+++..|
T Consensus 18 tPvvi~v~~~~q~v~~~eae~~L~~F 43 (87)
T 2rf4_B 18 TPVVIHATQLPQHVSTDEVLQFLESF 43 (87)
T ss_dssp CCCEEEESSCCEECCHHHHHHHHHHH
T ss_pred CCeEEEeecCCccCCHHHHHHHHHHH
Confidence 44678999999999999988888776
No 392
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=21.11 E-value=82 Score=18.13 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=21.1
Q ss_pred ceeEEEEEecCHHHHHHHHHHhCCc
Q 033181 84 SRGYGFVCYSTKAEMETALESLNGV 108 (125)
Q Consensus 84 ~~g~~fv~f~~~~~a~~a~~~l~~~ 108 (125)
.+||-||++...++...+++.+.|.
T Consensus 42 fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 42 VKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CCcEEEEEEEchHHHHHHHhCCCCE
Confidence 5789999999988888888877764
No 393
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.82 E-value=81 Score=14.79 Aligned_cols=16 Identities=13% Similarity=0.036 Sum_probs=10.8
Q ss_pred CCCHHHHHHHHHhcCC
Q 033181 1 MSTVEDCNAVIENLDG 16 (125)
Q Consensus 1 f~~~~~a~~A~~~~~g 16 (125)
|.+.+.+.+|+...+|
T Consensus 21 F~d~~~n~~AL~~~~G 36 (54)
T 2dah_A 21 FLNREANLQALIATGG 36 (54)
T ss_dssp CCCHHHHHHHHHHHTS
T ss_pred CCcHHHHHHHHHHcCC
Confidence 4555666788887666
No 394
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=20.78 E-value=68 Score=13.93 Aligned_cols=14 Identities=21% Similarity=0.294 Sum_probs=10.0
Q ss_pred CHHHHHHHHHhcCC
Q 033181 3 TVEDCNAVIENLDG 16 (125)
Q Consensus 3 ~~~~a~~A~~~~~g 16 (125)
+.++|.+|+...+|
T Consensus 17 ~~~~a~~AL~~~~~ 30 (43)
T 2g3q_A 17 TEEEAHNALEKCNW 30 (43)
T ss_dssp CHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHhCc
Confidence 35678888887665
Done!