BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033182
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 7/77 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++++I+ KALEL+P KA RR A+ K +++AI Q
Sbjct: 48 NLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQ------ 101
Query: 71 KKILEFDPSNNQAKRTI 87
K LE DP+N +AK+ +
Sbjct: 102 -KALELDPNNAKAKQNL 117
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++++I+ KALEL+P A A+ K +++AI
Sbjct: 14 NLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIE-------YY 66
Query: 71 KKILEFDPSNNQA 83
+K LE DP+N +A
Sbjct: 67 QKALELDPNNAKA 79
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 12 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 52
RG + K G ++++I++ KALEL+P KA A +K
Sbjct: 83 RGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQK 123
>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
pdb|1QZ2|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With
The C-Terminal Peptide Meevd Of Hsp90
Length = 336
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63
LR H N +C LKL F +I+ C KALEL+ K L RR EAH + FE A A
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADF 253
Query: 64 QDLMIVMKKILEFDPSNNQAKRTIL 88
Q K+L+ P NN+A +T L
Sbjct: 254 Q-------KVLQLYP-NNKAAKTQL 270
>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|B Chain B, Crystal Structure Of Fkbp52 C-Terminal Domain
pdb|1P5Q|C Chain C, Crystal Structure Of Fkbp52 C-Terminal Domain
Length = 336
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63
LR H N +C LKL F +I+ C KALEL+ K L RR EAH + FE A A
Sbjct: 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADF 253
Query: 64 QDLMIVMKKILEFDPSNNQAKRTIL 88
Q K+L+ P NN+A +T L
Sbjct: 254 Q-------KVLQLYP-NNKAAKTQL 270
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
+ +SN C++ G E+ I+ TKALE+ P + KAL+RRA A+E L +F +A+
Sbjct: 56 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 109
Score = 30.8 bits (68), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 21 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75
KF +IK TKA EL+P +A I A+ ++E +EAI +D I+ + + E
Sbjct: 439 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 493
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
+ +SN C++ G E+ I+ TKALE+ P + KAL+RRA A+E L +F +A+
Sbjct: 60 VFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAM 113
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 21 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75
KF +IK TKA EL+P +A I A+ ++E +EAI +D I+ + + E
Sbjct: 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 7/81 (8%)
Query: 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
+SNR C+ KL +F+ ++K+C + ++L PT++K R+A A E ++ + +A M
Sbjct: 53 YSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKA-------MD 105
Query: 69 VMKKILEFDPSNNQAKRTILR 89
V +K L+ D S +A R
Sbjct: 106 VYQKALDLDSSCKEAADGYQR 126
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 11 NRGI-CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
N+G CF K G + +++K T+A++ NP K RA + KL F+ A+
Sbjct: 21 NKGNECFQK-GDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLAL 70
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 35/54 (64%)
Query: 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
+ +SN C++ +G ++ ++ TKALEL P Y K L+RRA A+E L F +A+
Sbjct: 40 VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAM 93
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
C N G C LK+ ++ ++ C +ALE++P+ KAL RRA+ + L+ +++A+A
Sbjct: 275 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD----- 329
Query: 68 IVMKKILEFDPSNNQAKRTILRLQ 91
+KK E P + + +L+++
Sbjct: 330 --LKKAQEIAPEDKAIQAELLKVK 351
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 49.3 bits (116), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-------YY 100
Query: 71 KKILEFDPSNNQAKRTI 87
+K LE DP+N +AK+ +
Sbjct: 101 QKALELDPNNAEAKQNL 117
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 7/73 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-------YY 66
Query: 71 KKILEFDPSNNQA 83
+K LE DP+N +A
Sbjct: 67 QKALELDPNNAEA 79
Score = 31.2 bits (69), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 52
N G + K G ++E+I+ KALEL+P +A A +K
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 7/77 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIE-------YY 66
Query: 71 KKILEFDPSNNQAKRTI 87
+K LE DP+N +AK+ +
Sbjct: 67 QKALELDPNNAEAKQNL 83
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 52
N G + K G ++E+I+ KALEL+P +A A +K
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N +C+LKL ++ ++++ C KAL L+ K L RR EA + FE A +
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE------ 375
Query: 71 KKILEFDPSNNQAKRTILRLQPLA 94
K+LE +P N A+ I Q A
Sbjct: 376 -KVLEVNPQNKAARLQIFMCQKKA 398
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64
+++ H NR C LKL ++++ E +KA+E + +KAL RR++A EKL ++A+
Sbjct: 64 QAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAV---- 119
Query: 65 DLMIVMKKILEFDPSN 80
+ +++ + +P N
Sbjct: 120 ---LDLQRCVSLEPKN 132
>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With
Pseudophosphorylated Smad1 Peptide
pdb|3Q49|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Hsp70-C Peptide
pdb|3Q4A|B Chain B, Crystal Structure Of The Tpr Domain Of Chip Complexed With
Phosphorylated Smad1 Peptide
Length = 137
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 44/69 (63%)
Query: 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63
L ++ ++NR +C+LK+ + E+++ +C +ALEL+ +KA + ++E ++EAIA +
Sbjct: 41 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 100
Query: 64 QDLMIVMKK 72
Q + K+
Sbjct: 101 QRAYSLAKE 109
>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|B Chain B, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|C Chain C, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
pdb|2C2L|D Chain D, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase
Length = 281
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 41/61 (67%)
Query: 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63
L ++ ++NR +C+LK+ + E+++ +C +ALEL+ +KA + ++E ++EAIA +
Sbjct: 36 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANL 95
Query: 64 Q 64
Q
Sbjct: 96 Q 96
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
NR + KLG + ++++C +A+ ++P Y KA R A L EA+A
Sbjct: 51 NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA-------YY 103
Query: 71 KKILEFDPSNNQAKRTI 87
KK LE DP N K +
Sbjct: 104 KKALELDPDNETYKSNL 120
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
+SNR KL F E+I +C KA+E +P +++A IR+A A ++ + A+
Sbjct: 41 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 92
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
+I +SNR C KL +F+ ++ +C + L+ ++K IR+A + + +A +D
Sbjct: 47 AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYED 106
Query: 66 LMIVMKKILEFDPSNNQAKRTI 87
L+ DPSN +A+ +
Sbjct: 107 -------ALQVDPSNEEAREGV 121
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N +C+LKL ++ ++++ C KAL L+ K L RR EA + FE A +
Sbjct: 322 NLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE------ 375
Query: 71 KKILEFDPSNNQAKRTILRLQPLA 94
K+LE +P N A+ I Q A
Sbjct: 376 -KVLEVNPQNKAARLQISMCQKKA 398
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++E+I+ KALEL P +A A+ K ++EAI
Sbjct: 48 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE-------YY 100
Query: 71 KKILEFDPSNNQAKRTI 87
+K LE P+N +AK+ +
Sbjct: 101 QKALELYPNNAEAKQNL 117
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++E+I+ KALEL P +A A+ K ++EAI
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIE-------YY 66
Query: 71 KKILEFDPSNNQAKRTI 87
+K LE P+N +A +
Sbjct: 67 QKALELYPNNAEAWYNL 83
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
+SNR KL F E+I +C KA+E +P +++A IR+A A ++ + A+
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL 227
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 13 GICFLKLGKFEESIKECTKALELNP--TYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67
G F K +F+E+I+ KA EL+ TY+ R A +EK E +E AI+ + D +
Sbjct: 12 GNKFYKARQFDEAIEHYNKAWELHKDITYLNN--RAAAEYEKGE-YETAISTLNDAV 65
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix (Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix (Orthorombic Crystal Form)
Length = 136
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-------YY 58
Query: 71 KKILEFDPSNNQA 83
+K LE DP + +A
Sbjct: 59 QKALELDPRSAEA 71
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI
Sbjct: 40 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-------YY 92
Query: 71 KKILEFDPSNNQA 83
+K LE DP + +A
Sbjct: 93 QKALELDPRSAEA 105
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI
Sbjct: 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-------YY 126
Query: 71 KKILEFDP 78
+K LE DP
Sbjct: 127 QKALELDP 134
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70
N G + K G ++E+I+ KALEL+P +A A+ K ++EAI
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE-------YY 60
Query: 71 KKILEFDP 78
+K LE DP
Sbjct: 61 QKALELDP 68
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 59
+ +SNR + K G ++++ ++ K ++L P + K R+A A E L FEEA
Sbjct: 39 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEA 91
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
+I + NR + +L+ + ++ + T+A+EL+ Y+K RRA ++ L F A ++D
Sbjct: 55 AIYYGNRSLAYLRTECYGYALNDATRAIELDKKYIKGYYRRAASNMALGKFR---AALRD 111
Query: 66 LMIVMK 71
V+K
Sbjct: 112 YETVVK 117
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65
+I + NR + +L+ + ++ + T+A+EL+ Y+K RRA ++ L F A ++D
Sbjct: 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR---AALRD 103
Query: 66 LMIVMK 71
V+K
Sbjct: 104 YETVVK 109
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 5/54 (9%)
Query: 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
ICH CF K K E+I+ C++ L++ P + AL RAEA+ E ++EAI
Sbjct: 301 ICH-----CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI 349
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66
I + R FL +GK + ++ + TK ++L + A ++R K +EA
Sbjct: 61 IAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDF--- 117
Query: 67 MIVMKKILEFDPSNNQAKRTILRL 90
KK+L+ +PS N+ K +L
Sbjct: 118 ----KKVLKSNPSENEEKEAQSQL 137
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
ICH CF K K E+I+ C++ L+ P + AL RAEA+ E ++EAI
Sbjct: 301 ICH-----CFSKDEKPVEAIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAI 349
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66
I + R FL GK + ++ + TK ++L + A ++R K +EA
Sbjct: 61 IAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQRGHLLLKQGKLDEAEDD---- 116
Query: 67 MIVMKKILEFDPSNNQAKRTILRL 90
KK+L+ +PS N+ K +L
Sbjct: 117 ---FKKVLKSNPSENEEKEAQSQL 137
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
ICH CF K K E+I+ C++ L+ P + AL RAEA+ E ++EAI
Sbjct: 278 ICH-----CFSKDEKPVEAIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAI 326
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 35.4 bits (80), Expect = 0.009, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
+I + NR + +L+ + ++ + T+A+EL+ Y+K RRA ++ L F A+
Sbjct: 40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL 94
>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From
Arabidopsis Thaliana
Length = 338
Score = 35.0 bits (79), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 4 LRSICHSNRGICFLKLGKFEESIKECTKAL---ELNPTYMKALIRRAEAHEKLEHFEEA 59
+++ CH N C +KL +++E+I C L E NP KAL RR +A +L + A
Sbjct: 228 VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP---KALFRRGKAKAELGQMDSA 283
>pdb|2L6J|A Chain A, Tah1 Complexed By Meevd
Length = 111
Score = 32.3 bits (72), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66
+ +SN+ + +KLG++ ++I+ C + L T I R++ +LE + A+ +Q
Sbjct: 39 VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI-RSKLQYRLELAQGAVGSVQIP 97
Query: 67 MIVMKKILE-FDPS 79
++ + ++ E +D S
Sbjct: 98 VVEVDELPEGYDRS 111
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 12 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
G+ G + ESI KA++L+P K + + +A LE +EEA+
Sbjct: 12 EGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60
>pdb|2IOY|A Chain A, Crystal Structure Of Thermoanaerobacter Tengcongensis
Ribose Binding Protein
pdb|2IOY|B Chain B, Crystal Structure Of Thermoanaerobacter Tengcongensis
Ribose Binding Protein
Length = 283
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 36 NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN-QAKRTILRLQP 92
N ++ + + A ++ + F+EAIA D+ IV K+ +FD S IL+ QP
Sbjct: 125 NVVELEGIPGASAARDRGKGFDEAIAKYPDIKIVAKQAADFDRSKGLSVMENILQAQP 182
>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative
Peptidylprolyl Isomerase, From Caenorhabditis Elegans
Length = 162
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH---EKLEHFEE 58
++N C+L +G E+ + ++ L+ T KAL RRA+A KL+ EE
Sbjct: 66 YANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRA 47
GI + G F+ + + LEL+PTY A + R
Sbjct: 84 GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
G+ LG+F+E+I AL L P K A ++E++ EEA+
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGSHEEAL 164
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
G+ ++++ K++ ++ K E NP R A + L F+EAI
Sbjct: 83 GLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAI 130
>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide
pdb|4AIF|B Chain B, Aip Tpr Domain In Complex With Human Hsp90 Peptide
Length = 144
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 15 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74
C L + ++ E + C+ L +KA +R +AH + + +EA A K+L
Sbjct: 69 CKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQAD-------FAKVL 121
Query: 75 EFDPS 79
E DP+
Sbjct: 122 ELDPA 126
>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide
pdb|4APO|B Chain B, Aip Tpr Domain In Complex With Human Tomm20 Peptide
Length = 165
Score = 28.9 bits (63), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 7/65 (10%)
Query: 15 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74
C L + ++ E + C+ L +KA +R +AH + + +EA A K+L
Sbjct: 75 CKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQAD-------FAKVL 127
Query: 75 EFDPS 79
E DP+
Sbjct: 128 ELDPA 132
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site
Of Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site
Of Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In
Complex With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In
Complex With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 28.5 bits (62), Expect = 0.88, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 20 GKFEESIKECTKALELNPTYMKA-------LIRRAEAHEKLEHFEEAI 60
G EE+++ KALE+ P + A L ++ + E L H++EAI
Sbjct: 23 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 70
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61
+SN G ++ + +++ T+A+++NP + A A H+ + EAIA
Sbjct: 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIA 132
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 13/71 (18%), Positives = 35/71 (49%), Gaps = 7/71 (9%)
Query: 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
HSN + GK +E++ +A+ ++PT+ A+A+ + + + + +Q +
Sbjct: 46 HSNLASVLQQQGKLQEALMHYKEAIRISPTF-------ADAYSNMGNTLKEMQDVQGALQ 98
Query: 69 VMKKILEFDPS 79
+ ++ +P+
Sbjct: 99 CYTRAIQINPA 109
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
G+ LG+F+E+I AL L P K A ++E++ EEA+
Sbjct: 117 GVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
G+ ++++ K++ ++ K E NP R A + L F+EAI
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAI 130
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
G+ LG+F+E+I AL L P K A ++E++ EEA+
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
G+ ++++ K++ ++ K E NP R A + L F+EAI
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
G+ LG+F+E+I AL L P K A ++E++ EEA+
Sbjct: 117 GVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60
G+ ++++ K++ ++ K E NP R A + L F+EAI
Sbjct: 83 GLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI 130
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62
++ SN G F G+ +I KA+ L+P ++ A I ++ F+ A+A
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAA 225
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 49
+SN G + + G+ +E+I+ AL L P ++ I A A
Sbjct: 70 YSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAA 110
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 20 GKFEESIKECTKALELNPTYMKA-------LIRRAEAHEKLEHFEEAI 60
G EE+++ KALE+ P + A L ++ + E L H++EAI
Sbjct: 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
>pdb|3ZC1|A Chain A, Crystal Structure Of Afc3po
pdb|3ZC1|B Chain B, Crystal Structure Of Afc3po
pdb|3ZC1|C Chain C, Crystal Structure Of Afc3po
pdb|3ZC1|D Chain D, Crystal Structure Of Afc3po
pdb|3ZC1|E Chain E, Crystal Structure Of Afc3po
pdb|3ZC1|F Chain F, Crystal Structure Of Afc3po
pdb|3ZC1|G Chain G, Crystal Structure Of Afc3po
pdb|3ZC1|H Chain H, Crystal Structure Of Afc3po
Length = 199
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 9 HSNRGICFLKLGKFEESIKECTKALEL 35
HS + I + GK EE+ +E KA+EL
Sbjct: 33 HSTKSIALIHAGKVEEAEQELKKAIEL 59
>pdb|3ZC0|A Chain A, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|B Chain B, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|C Chain C, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|D Chain D, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|E Chain E, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|F Chain F, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|G Chain G, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|H Chain H, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|I Chain I, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|J Chain J, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|K Chain K, Structure Of Afc3po - Duplex Rna Complex
pdb|3ZC0|L Chain L, Structure Of Afc3po - Duplex Rna Complex
Length = 199
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 9 HSNRGICFLKLGKFEESIKECTKALEL 35
HS + I + GK EE+ +E KA+EL
Sbjct: 33 HSTKSIALIHAGKVEEAEQELKKAIEL 59
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMK-------ALIRRAEAHEKLEHFEEAI 60
G + EE++ +ALEL P Y++ + I E +EHF EA+
Sbjct: 195 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 249
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 26.6 bits (57), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMK-------ALIRRAEAHEKLEHFEEAI 60
G + EE++ +ALEL P Y++ + I E +EHF EA+
Sbjct: 218 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMK-------ALIRRAEAHEKLEHFEEAI 60
G + EE++ +ALEL P Y++ + I E +EHF EA+
Sbjct: 218 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 272
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMK-------ALIRRAEAHEKLEHFEEAI 60
G + EE++ +ALEL P Y++ + I E +EHF EA+
Sbjct: 209 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 263
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 7/55 (12%)
Query: 13 GICFLKLGKFEESIKECTKALELNPTYMK-------ALIRRAEAHEKLEHFEEAI 60
G + EE++ +ALEL P Y++ + I E +EHF EA+
Sbjct: 258 GATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 312
>pdb|3K40|A Chain A, Crystal Structure Of Drosophila
3,4-Dihydroxyphenylalanine Decarboxylase
pdb|3K40|B Chain B, Crystal Structure Of Drosophila
3,4-Dihydroxyphenylalanine Decarboxylase
Length = 475
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 19 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68
+ ++ E+I+E E+ P Y+K LI A A EK E +++ + I+ +++
Sbjct: 17 IAEYLENIRERRVLPEVKPGYLKPLIPDA-APEKPEKWQDVMQDIERVIM 65
>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
pdb|2FBN|B Chain B, Plasmodium Falciparum Putative Fk506-Binding Protein
Pfl2275c, C-Terminal Tpr-Containing Domain
Length = 198
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 59
C+ N C+ K + ++I +K L+++ +KAL + A+ EEA
Sbjct: 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEA 141
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,776,237
Number of Sequences: 62578
Number of extensions: 81713
Number of successful extensions: 385
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 100
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)