Query 033182
Match_columns 125
No_of_seqs 110 out of 1521
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 10:49:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4234 TPR repeat-containing 99.8 3.2E-18 6.9E-23 118.9 11.1 113 3-122 131-246 (271)
2 KOG0553 TPR repeat-containing 99.7 2.8E-16 6E-21 114.3 8.1 91 1-98 110-200 (304)
3 KOG0543 FKBP-type peptidyl-pro 99.6 2.8E-14 6E-19 107.4 12.8 100 3-109 254-356 (397)
4 PF13414 TPR_11: TPR repeat; P 99.6 3.1E-14 6.8E-19 83.2 8.1 67 5-78 2-69 (69)
5 PRK15359 type III secretion sy 99.5 3E-13 6.6E-18 90.2 11.1 77 9-92 27-103 (144)
6 PRK15359 type III secretion sy 99.5 1.4E-12 3.1E-17 87.0 10.7 88 1-95 53-140 (144)
7 PF13432 TPR_16: Tetratricopep 99.4 1.1E-12 2.4E-17 75.8 7.9 65 10-81 1-65 (65)
8 PLN03088 SGT1, suppressor of 99.4 3E-12 6.4E-17 96.8 11.2 89 2-97 32-120 (356)
9 PRK15363 pathogenicity island 99.4 6.3E-12 1.4E-16 84.6 11.0 93 3-102 32-124 (157)
10 KOG0548 Molecular co-chaperone 99.4 4.3E-12 9.3E-17 98.2 9.9 86 2-94 388-473 (539)
11 TIGR02552 LcrH_SycD type III s 99.4 2.4E-11 5.1E-16 79.2 11.3 94 2-102 13-106 (135)
12 PRK15363 pathogenicity island 99.3 2E-11 4.3E-16 82.2 10.4 72 1-79 64-135 (157)
13 TIGR02552 LcrH_SycD type III s 99.3 2.3E-11 5E-16 79.3 10.1 86 2-94 47-132 (135)
14 PRK11189 lipoprotein NlpI; Pro 99.3 2.8E-11 6.2E-16 89.3 11.6 89 5-100 63-151 (296)
15 PRK10370 formate-dependent nit 99.3 7.1E-11 1.5E-15 82.7 10.1 94 2-102 69-165 (198)
16 PF13371 TPR_9: Tetratricopept 99.2 7.6E-11 1.6E-15 69.3 8.0 70 13-89 2-71 (73)
17 KOG0553 TPR repeat-containing 99.2 1.1E-10 2.4E-15 85.3 10.1 91 5-102 80-170 (304)
18 PF14559 TPR_19: Tetratricopep 99.2 6.3E-11 1.4E-15 68.7 7.1 66 17-89 2-67 (68)
19 cd00189 TPR Tetratricopeptide 99.2 7.4E-10 1.6E-14 65.3 12.0 87 8-101 2-88 (100)
20 KOG0548 Molecular co-chaperone 99.2 1.1E-10 2.5E-15 90.4 9.6 84 1-91 31-114 (539)
21 KOG4626 O-linked N-acetylgluco 99.2 2.3E-10 5E-15 90.7 11.0 91 3-100 351-441 (966)
22 PRK11189 lipoprotein NlpI; Pro 99.2 2E-10 4.4E-15 84.7 9.9 74 2-82 94-167 (296)
23 TIGR00990 3a0801s09 mitochondr 99.2 4.6E-10 9.9E-15 90.0 12.5 80 7-93 366-445 (615)
24 TIGR00990 3a0801s09 mitochondr 99.2 7.8E-10 1.7E-14 88.7 13.6 93 3-102 328-420 (615)
25 KOG4626 O-linked N-acetylgluco 99.1 2.9E-10 6.3E-15 90.2 9.0 92 1-99 417-508 (966)
26 PRK12370 invasion protein regu 99.1 8.1E-10 1.8E-14 87.8 10.7 89 1-96 333-421 (553)
27 PF13424 TPR_12: Tetratricopep 99.1 7.1E-10 1.5E-14 66.0 7.9 69 3-71 2-77 (78)
28 PLN03088 SGT1, suppressor of 99.1 1.3E-09 2.8E-14 82.5 11.1 87 9-102 5-91 (356)
29 COG3063 PilF Tfp pilus assembl 99.1 1.6E-09 3.4E-14 76.9 10.3 91 5-102 34-124 (250)
30 KOG1126 DNA-binding cell divis 99.1 1.2E-09 2.7E-14 86.4 10.7 94 1-101 484-577 (638)
31 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 4.7E-10 1E-14 86.3 8.1 68 2-76 71-141 (453)
32 TIGR02521 type_IV_pilW type IV 99.1 3.7E-09 8.1E-14 72.8 11.7 92 4-102 29-120 (234)
33 PRK02603 photosystem I assembl 99.1 3.2E-09 6.9E-14 72.4 10.7 87 3-96 32-121 (172)
34 CHL00033 ycf3 photosystem I as 99.1 7.3E-09 1.6E-13 70.3 12.0 86 3-95 32-120 (168)
35 PRK09782 bacteriophage N4 rece 99.0 3.4E-09 7.4E-14 89.0 12.0 93 2-102 606-698 (987)
36 PRK12370 invasion protein regu 99.0 2.6E-09 5.5E-14 85.0 10.6 94 2-102 291-393 (553)
37 TIGR02795 tol_pal_ybgF tol-pal 99.0 7E-09 1.5E-13 65.5 10.7 90 6-102 2-97 (119)
38 KOG1155 Anaphase-promoting com 99.0 6E-09 1.3E-13 80.2 11.9 95 1-102 393-487 (559)
39 KOG0550 Molecular chaperone (D 99.0 2.5E-09 5.5E-14 81.2 9.3 90 4-101 285-374 (486)
40 KOG1155 Anaphase-promoting com 99.0 9.7E-09 2.1E-13 79.1 12.0 95 1-102 359-453 (559)
41 KOG0547 Translocase of outer m 99.0 1.2E-08 2.5E-13 79.2 11.4 93 3-102 357-449 (606)
42 PRK10370 formate-dependent nit 99.0 6.7E-09 1.5E-13 72.7 9.4 83 1-90 102-187 (198)
43 KOG0547 Translocase of outer m 99.0 6.2E-09 1.3E-13 80.7 9.5 95 1-102 389-483 (606)
44 TIGR02521 type_IV_pilW type IV 99.0 2.8E-08 6.1E-13 68.4 12.1 84 6-96 99-184 (234)
45 PRK09782 bacteriophage N4 rece 98.9 1.1E-08 2.4E-13 86.0 11.5 92 2-100 639-730 (987)
46 PF12895 Apc3: Anaphase-promot 98.9 3.6E-09 7.9E-14 64.0 5.9 57 5-62 24-80 (84)
47 PRK15179 Vi polysaccharide bio 98.9 2.5E-08 5.4E-13 81.2 12.4 93 2-101 116-208 (694)
48 PRK15174 Vi polysaccharide exp 98.9 1.2E-08 2.6E-13 82.7 10.3 93 3-102 243-339 (656)
49 CHL00033 ycf3 photosystem I as 98.9 2.9E-08 6.3E-13 67.3 10.6 77 5-81 71-154 (168)
50 PRK15179 Vi polysaccharide bio 98.9 3.6E-08 7.8E-13 80.3 12.6 93 3-102 83-175 (694)
51 TIGR02795 tol_pal_ybgF tol-pal 98.9 2.1E-08 4.6E-13 63.2 8.9 74 6-86 39-115 (119)
52 PRK15331 chaperone protein Sic 98.9 6.4E-08 1.4E-12 65.7 11.6 92 4-102 35-126 (165)
53 KOG4648 Uncharacterized conser 98.9 6.9E-09 1.5E-13 77.9 7.0 84 2-92 127-210 (536)
54 PRK15331 chaperone protein Sic 98.9 1.9E-08 4E-13 68.3 8.4 85 2-94 67-151 (165)
55 PF12895 Apc3: Anaphase-promot 98.9 9.6E-09 2.1E-13 62.1 6.0 77 18-102 1-79 (84)
56 KOG1126 DNA-binding cell divis 98.9 3.1E-09 6.7E-14 84.2 4.8 94 2-102 417-544 (638)
57 TIGR03302 OM_YfiO outer membra 98.8 6.9E-08 1.5E-12 68.4 11.1 84 3-93 30-119 (235)
58 KOG0376 Serine-threonine phosp 98.8 3E-09 6.5E-14 81.9 4.3 90 1-97 33-122 (476)
59 PRK15174 Vi polysaccharide exp 98.8 3.4E-08 7.5E-13 80.1 10.5 94 2-102 280-373 (656)
60 KOG0551 Hsp90 co-chaperone CNS 98.8 9.2E-08 2E-12 71.2 11.5 89 3-91 116-211 (390)
61 COG5010 TadD Flp pilus assembl 98.8 1.6E-07 3.4E-12 67.7 12.1 92 4-102 98-189 (257)
62 cd00189 TPR Tetratricopeptide 98.8 5.1E-08 1.1E-12 57.3 8.2 70 3-79 31-100 (100)
63 PF12688 TPR_5: Tetratrico pep 98.8 1.2E-07 2.6E-12 61.5 10.2 89 7-102 2-96 (120)
64 PRK02603 photosystem I assembl 98.8 1.4E-07 3E-12 64.3 10.8 76 6-81 72-154 (172)
65 PF13429 TPR_15: Tetratricopep 98.8 6.9E-08 1.5E-12 70.3 9.7 92 4-102 144-235 (280)
66 KOG1125 TPR repeat-containing 98.8 2E-08 4.4E-13 78.7 7.2 92 4-102 428-519 (579)
67 COG3063 PilF Tfp pilus assembl 98.8 4.7E-08 1E-12 69.5 8.3 91 2-100 65-158 (250)
68 PLN02789 farnesyltranstransfer 98.8 2.1E-07 4.6E-12 69.7 11.5 92 2-100 67-161 (320)
69 KOG4642 Chaperone-dependent E3 98.7 4.8E-08 1E-12 69.9 7.4 90 1-92 39-128 (284)
70 KOG4162 Predicted calmodulin-b 98.7 9.7E-08 2.1E-12 77.1 10.0 95 1-102 679-775 (799)
71 KOG1125 TPR repeat-containing 98.7 2E-08 4.3E-13 78.8 6.0 71 2-79 460-530 (579)
72 PF06552 TOM20_plant: Plant sp 98.7 3.7E-07 8E-12 62.8 11.5 93 2-94 21-127 (186)
73 PRK11447 cellulose synthase su 98.7 2.1E-07 4.6E-12 79.6 11.9 94 2-102 299-406 (1157)
74 PRK10049 pgaA outer membrane p 98.7 3.2E-07 6.9E-12 75.6 12.3 92 3-102 46-137 (765)
75 KOG2076 RNA polymerase III tra 98.7 1.6E-07 3.4E-12 76.9 10.2 92 4-102 412-504 (895)
76 KOG0545 Aryl-hydrocarbon recep 98.7 3E-07 6.6E-12 66.3 10.5 90 2-98 226-316 (329)
77 COG4235 Cytochrome c biogenesi 98.7 3.2E-07 6.9E-12 67.3 10.6 101 2-109 152-257 (287)
78 TIGR02917 PEP_TPR_lipo putativ 98.7 2.1E-07 4.4E-12 75.4 10.7 91 3-100 598-688 (899)
79 TIGR02917 PEP_TPR_lipo putativ 98.7 5.7E-07 1.2E-11 72.8 12.9 90 4-100 123-212 (899)
80 PRK11447 cellulose synthase su 98.7 1.7E-07 3.8E-12 80.1 10.0 93 3-102 600-692 (1157)
81 TIGR03302 OM_YfiO outer membra 98.7 8E-07 1.7E-11 62.9 11.9 76 6-88 70-156 (235)
82 KOG1173 Anaphase-promoting com 98.6 2.7E-07 5.9E-12 72.5 9.6 76 8-90 457-532 (611)
83 COG4783 Putative Zn-dependent 98.6 5.3E-07 1.1E-11 69.8 11.0 93 3-102 337-429 (484)
84 PRK10803 tol-pal system protei 98.6 1.4E-06 3.1E-11 63.6 12.8 89 7-102 143-238 (263)
85 PRK11788 tetratricopeptide rep 98.6 4.6E-07 9.9E-12 68.3 10.6 84 7-97 181-265 (389)
86 PLN02789 farnesyltranstransfer 98.6 3.5E-07 7.5E-12 68.5 9.6 86 2-94 102-189 (320)
87 PF13429 TPR_15: Tetratricopep 98.6 7.8E-08 1.7E-12 70.0 6.0 94 2-102 176-269 (280)
88 KOG0624 dsRNA-activated protei 98.6 3E-07 6.6E-12 69.1 9.1 83 2-91 68-150 (504)
89 KOG4648 Uncharacterized conser 98.6 1.5E-07 3.3E-12 70.8 7.4 84 9-99 100-183 (536)
90 COG5010 TadD Flp pilus assembl 98.6 4.2E-07 9.2E-12 65.5 9.2 95 1-102 129-223 (257)
91 PRK10049 pgaA outer membrane p 98.6 1.2E-06 2.7E-11 72.2 13.0 90 6-102 359-448 (765)
92 KOG0624 dsRNA-activated protei 98.6 2.7E-07 5.9E-12 69.4 7.8 81 11-98 312-392 (504)
93 PF13428 TPR_14: Tetratricopep 98.6 1.6E-07 3.5E-12 50.1 4.9 43 6-48 1-43 (44)
94 PF00515 TPR_1: Tetratricopept 98.6 1.3E-07 2.9E-12 47.5 4.2 34 6-39 1-34 (34)
95 PF13414 TPR_11: TPR repeat; P 98.6 5.2E-07 1.1E-11 52.2 7.3 58 38-102 1-59 (69)
96 PRK11788 tetratricopeptide rep 98.6 9.7E-07 2.1E-11 66.5 10.5 90 6-102 141-235 (389)
97 cd05804 StaR_like StaR_like; a 98.5 8.4E-07 1.8E-11 66.2 9.5 93 3-102 111-207 (355)
98 PRK10803 tol-pal system protei 98.5 1.6E-06 3.4E-11 63.4 10.5 79 5-90 179-260 (263)
99 PF13431 TPR_17: Tetratricopep 98.5 1.4E-07 3E-12 47.8 3.3 33 29-61 2-34 (34)
100 KOG0550 Molecular chaperone (D 98.5 1E-06 2.2E-11 67.4 9.1 93 3-102 246-342 (486)
101 PF13428 TPR_14: Tetratricopep 98.5 3.9E-07 8.5E-12 48.6 5.0 43 40-89 1-43 (44)
102 KOG2076 RNA polymerase III tra 98.5 2.2E-06 4.8E-11 70.3 11.1 91 3-100 170-260 (895)
103 PRK10153 DNA-binding transcrip 98.5 1.1E-06 2.3E-11 69.7 9.2 77 3-88 417-493 (517)
104 PF00515 TPR_1: Tetratricopept 98.5 3.5E-07 7.7E-12 45.9 4.3 34 40-80 1-34 (34)
105 KOG2002 TPR-containing nuclear 98.4 3.3E-06 7.1E-11 69.9 11.0 86 3-95 304-390 (1018)
106 PF12569 NARP1: NMDA receptor- 98.4 4.5E-06 9.8E-11 66.2 11.2 97 5-108 193-290 (517)
107 KOG3060 Uncharacterized conser 98.4 1.9E-05 4E-10 57.2 13.0 85 4-95 152-239 (289)
108 KOG1128 Uncharacterized conser 98.4 7.8E-07 1.7E-11 71.7 6.6 81 13-100 492-572 (777)
109 KOG1128 Uncharacterized conser 98.4 1.8E-06 4E-11 69.6 8.5 95 1-102 514-608 (777)
110 PF07719 TPR_2: Tetratricopept 98.4 1E-06 2.2E-11 43.9 4.7 34 6-39 1-34 (34)
111 KOG0543 FKBP-type peptidyl-pro 98.4 7E-06 1.5E-10 62.5 10.8 88 8-102 210-312 (397)
112 PF07719 TPR_2: Tetratricopept 98.4 1.4E-06 3.1E-11 43.4 4.7 34 40-80 1-34 (34)
113 KOG4234 TPR repeat-containing 98.4 7.1E-06 1.5E-10 57.8 9.5 88 6-100 95-187 (271)
114 PRK10866 outer membrane biogen 98.3 4.7E-06 1E-10 60.2 8.7 73 5-84 31-106 (243)
115 PF13525 YfiO: Outer membrane 98.3 2.6E-05 5.6E-10 54.7 12.1 81 4-91 3-89 (203)
116 COG2956 Predicted N-acetylgluc 98.3 1.7E-05 3.7E-10 59.2 11.5 92 4-102 178-270 (389)
117 KOG4162 Predicted calmodulin-b 98.3 2E-06 4.4E-11 69.6 7.0 75 1-82 713-789 (799)
118 KOG1840 Kinesin light chain [C 98.3 1.3E-05 2.8E-10 63.4 11.3 108 2-109 279-397 (508)
119 PF09976 TPR_21: Tetratricopep 98.3 1.5E-05 3.2E-10 52.9 9.9 90 5-102 47-139 (145)
120 KOG1127 TPR repeat-containing 98.3 6E-06 1.3E-10 68.8 9.1 90 5-101 561-650 (1238)
121 COG4785 NlpI Lipoprotein NlpI, 98.3 3.2E-06 6.9E-11 60.2 6.6 84 1-91 94-177 (297)
122 PF13512 TPR_18: Tetratricopep 98.3 3E-05 6.6E-10 51.6 10.8 76 5-87 9-87 (142)
123 KOG2002 TPR-containing nuclear 98.2 9.1E-06 2E-10 67.4 9.5 88 6-100 680-769 (1018)
124 KOG2003 TPR repeat-containing 98.2 3.5E-06 7.7E-11 65.6 6.5 92 4-102 488-579 (840)
125 KOG4555 TPR repeat-containing 98.2 7.4E-05 1.6E-09 49.5 11.2 86 8-100 45-134 (175)
126 PRK11906 transcriptional regul 98.2 2.5E-05 5.4E-10 60.7 10.5 89 2-97 291-388 (458)
127 PF03704 BTAD: Bacterial trans 98.2 3.3E-05 7.1E-10 51.0 9.8 78 4-81 60-137 (146)
128 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 2.4E-05 5.3E-10 60.2 9.6 91 5-102 199-289 (395)
129 KOG4642 Chaperone-dependent E3 98.2 4.9E-06 1.1E-10 59.8 5.4 86 10-102 14-99 (284)
130 PF06552 TOM20_plant: Plant sp 98.1 6.4E-05 1.4E-09 51.9 10.6 75 21-95 6-83 (186)
131 KOG1173 Anaphase-promoting com 98.1 2E-05 4.4E-10 62.3 8.8 92 3-101 309-400 (611)
132 KOG2003 TPR repeat-containing 98.1 2E-05 4.3E-10 61.5 8.4 91 4-101 522-612 (840)
133 KOG3060 Uncharacterized conser 98.1 0.00029 6.2E-09 51.2 13.8 87 2-95 116-202 (289)
134 PRK11906 transcriptional regul 98.1 1.7E-05 3.8E-10 61.6 8.0 75 1-82 333-407 (458)
135 KOG4555 TPR repeat-containing 98.1 1.9E-05 4.1E-10 52.2 6.9 71 2-79 73-147 (175)
136 PF14853 Fis1_TPR_C: Fis1 C-te 98.1 3.8E-05 8.1E-10 42.8 7.2 48 41-95 2-49 (53)
137 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 1.2E-05 2.6E-10 62.3 6.9 61 35-102 70-133 (453)
138 COG4783 Putative Zn-dependent 98.1 4.2E-05 9.2E-10 59.5 9.5 86 2-94 370-455 (484)
139 PF13432 TPR_16: Tetratricopep 98.1 2E-05 4.4E-10 44.9 6.0 52 44-102 1-52 (65)
140 COG4785 NlpI Lipoprotein NlpI, 98.1 2.1E-05 4.4E-10 56.2 6.9 78 2-86 61-138 (297)
141 COG4235 Cytochrome c biogenesi 98.0 4E-05 8.6E-10 56.4 8.6 69 22-97 138-206 (287)
142 PRK10747 putative protoheme IX 98.0 0.00016 3.6E-09 55.5 12.4 88 7-101 118-207 (398)
143 KOG1174 Anaphase-promoting com 98.0 6.2E-05 1.3E-09 58.0 9.7 105 7-118 301-409 (564)
144 COG1729 Uncharacterized protei 98.0 0.00011 2.3E-09 53.6 10.0 94 9-109 144-245 (262)
145 PF13512 TPR_18: Tetratricopep 98.0 7.1E-05 1.5E-09 49.8 8.4 75 5-86 46-138 (142)
146 PRK10941 hypothetical protein; 98.0 0.00017 3.8E-09 52.9 11.0 79 5-90 180-258 (269)
147 TIGR00540 hemY_coli hemY prote 98.0 0.00022 4.7E-09 54.9 12.0 90 6-102 118-208 (409)
148 PRK14574 hmsH outer membrane p 98.0 0.00017 3.7E-09 60.2 12.0 72 12-91 108-179 (822)
149 KOG1840 Kinesin light chain [C 98.0 0.00011 2.4E-09 58.2 10.4 99 3-102 364-471 (508)
150 PF12688 TPR_5: Tetratrico pep 98.0 0.00011 2.5E-09 47.6 8.8 60 3-62 35-97 (120)
151 PF13371 TPR_9: Tetratricopept 98.0 2.3E-05 4.9E-10 45.6 5.1 47 1-47 24-70 (73)
152 PF13181 TPR_8: Tetratricopept 98.0 1.8E-05 3.9E-10 39.4 3.9 33 7-39 2-34 (34)
153 PRK14574 hmsH outer membrane p 98.0 0.0002 4.4E-09 59.8 12.1 92 4-102 414-505 (822)
154 PF13181 TPR_8: Tetratricopept 97.9 2.1E-05 4.6E-10 39.1 3.8 34 40-80 1-34 (34)
155 KOG0551 Hsp90 co-chaperone CNS 97.9 0.00033 7.2E-09 52.6 11.1 85 6-97 81-169 (390)
156 PF04733 Coatomer_E: Coatomer 97.9 9.6E-05 2.1E-09 54.7 8.3 70 6-82 201-271 (290)
157 KOG1156 N-terminal acetyltrans 97.9 8.8E-05 1.9E-09 59.5 8.3 83 9-98 44-126 (700)
158 KOG3824 Huntingtin interacting 97.9 0.0003 6.4E-09 52.7 10.5 80 9-95 119-198 (472)
159 KOG3364 Membrane protein invol 97.9 0.00034 7.4E-09 46.2 9.6 82 7-95 33-119 (149)
160 PRK14720 transcript cleavage f 97.9 0.00012 2.6E-09 61.4 9.2 83 3-94 62-163 (906)
161 PF13424 TPR_12: Tetratricopep 97.9 2.8E-05 6.2E-10 45.9 4.1 66 37-102 2-67 (78)
162 PF09976 TPR_21: Tetratricopep 97.8 0.00011 2.4E-09 48.6 7.3 64 3-74 82-145 (145)
163 KOG1129 TPR repeat-containing 97.8 2.5E-05 5.5E-10 58.7 4.5 87 4-97 356-445 (478)
164 KOG2796 Uncharacterized conser 97.8 0.00024 5.1E-09 52.2 9.3 81 5-92 251-334 (366)
165 KOG0545 Aryl-hydrocarbon recep 97.8 0.00027 5.9E-09 51.3 8.9 89 6-101 178-284 (329)
166 COG1729 Uncharacterized protei 97.8 0.00036 7.9E-09 50.8 9.6 79 4-89 176-257 (262)
167 KOG1156 N-terminal acetyltrans 97.8 0.00032 6.9E-09 56.5 10.0 93 3-102 72-164 (700)
168 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00011 2.4E-09 56.6 7.3 60 3-62 231-290 (395)
169 KOG0376 Serine-threonine phosp 97.8 2.8E-05 6.1E-10 60.4 4.0 87 9-102 7-93 (476)
170 PRK10747 putative protoheme IX 97.8 0.00022 4.8E-09 54.8 8.9 77 18-102 306-382 (398)
171 COG4105 ComL DNA uptake lipopr 97.8 0.00036 7.8E-09 50.6 9.1 71 6-83 34-107 (254)
172 TIGR00540 hemY_coli hemY prote 97.7 0.00024 5.2E-09 54.7 8.5 73 20-100 313-389 (409)
173 cd05804 StaR_like StaR_like; a 97.7 0.00023 4.9E-09 53.1 8.1 88 8-102 45-169 (355)
174 smart00028 TPR Tetratricopepti 97.7 8.8E-05 1.9E-09 34.9 4.0 33 7-39 2-34 (34)
175 KOG0495 HAT repeat protein [RN 97.7 0.0004 8.6E-09 56.3 9.5 83 7-96 652-734 (913)
176 KOG1129 TPR repeat-containing 97.7 3E-05 6.5E-10 58.3 3.0 79 3-88 392-470 (478)
177 PF14559 TPR_19: Tetratricopep 97.7 7.7E-05 1.7E-09 42.7 4.1 47 2-48 21-67 (68)
178 PRK14720 transcript cleavage f 97.7 0.00025 5.4E-09 59.5 8.1 76 7-83 117-205 (906)
179 PRK10153 DNA-binding transcrip 97.7 0.00058 1.3E-08 54.4 9.8 93 2-102 372-474 (517)
180 PF12569 NARP1: NMDA receptor- 97.6 0.00082 1.8E-08 53.5 10.5 80 5-91 3-82 (517)
181 KOG1308 Hsp70-interacting prot 97.6 1.8E-05 3.9E-10 59.4 1.1 72 1-79 143-214 (377)
182 KOG3785 Uncharacterized conser 97.6 0.0009 1.9E-08 51.1 9.9 55 8-62 59-113 (557)
183 COG2956 Predicted N-acetylgluc 97.6 0.00089 1.9E-08 50.3 9.7 92 4-102 139-235 (389)
184 PF13525 YfiO: Outer membrane 97.6 0.0026 5.5E-08 44.6 11.5 86 3-95 39-141 (203)
185 PF04733 Coatomer_E: Coatomer 97.6 0.00049 1.1E-08 51.0 8.0 71 20-97 181-251 (290)
186 KOG1127 TPR repeat-containing 97.6 0.0014 3.1E-08 55.2 11.3 62 1-62 591-652 (1238)
187 PF13176 TPR_7: Tetratricopept 97.6 0.00014 3E-09 37.0 3.6 28 8-35 1-28 (36)
188 KOG0546 HSP90 co-chaperone CPR 97.6 0.00012 2.6E-09 55.2 4.5 93 3-102 272-364 (372)
189 PF14853 Fis1_TPR_C: Fis1 C-te 97.6 0.00074 1.6E-08 37.5 6.7 43 7-49 2-44 (53)
190 PRK10866 outer membrane biogen 97.6 0.0042 9.2E-08 44.8 12.4 85 4-95 67-175 (243)
191 smart00028 TPR Tetratricopepti 97.5 0.00025 5.4E-09 33.2 4.1 33 41-80 2-34 (34)
192 PF13174 TPR_6: Tetratricopept 97.5 0.0003 6.6E-09 34.3 4.4 33 41-80 1-33 (33)
193 PF14561 TPR_20: Tetratricopep 97.5 0.0011 2.5E-08 40.7 7.6 65 25-96 7-73 (90)
194 COG4976 Predicted methyltransf 97.5 0.00021 4.6E-09 51.3 4.5 59 16-81 5-63 (287)
195 KOG1174 Anaphase-promoting com 97.4 0.0073 1.6E-07 47.0 12.6 38 25-62 423-460 (564)
196 PF13176 TPR_7: Tetratricopept 97.4 0.00034 7.3E-09 35.5 3.8 28 42-76 1-28 (36)
197 PF13174 TPR_6: Tetratricopept 97.4 0.00046 1E-08 33.6 4.2 32 8-39 2-33 (33)
198 KOG1310 WD40 repeat protein [G 97.4 0.00074 1.6E-08 53.7 6.8 82 3-91 405-489 (758)
199 KOG1308 Hsp70-interacting prot 97.2 7.3E-05 1.6E-09 56.2 0.1 80 16-102 124-203 (377)
200 KOG1130 Predicted G-alpha GTPa 97.0 0.0034 7.4E-08 48.8 7.4 96 6-102 235-336 (639)
201 PF13431 TPR_17: Tetratricopep 97.0 0.00081 1.8E-08 33.8 2.4 31 70-100 2-32 (34)
202 COG2912 Uncharacterized conser 96.9 0.013 2.8E-07 43.0 8.8 77 6-89 181-257 (269)
203 KOG2396 HAT (Half-A-TPR) repea 96.8 0.047 1E-06 43.3 11.9 80 5-91 104-184 (568)
204 KOG2471 TPR repeat-containing 96.7 0.003 6.5E-08 50.0 4.9 86 5-97 282-385 (696)
205 KOG2796 Uncharacterized conser 96.7 0.021 4.5E-07 42.2 8.9 93 3-102 209-307 (366)
206 PF13374 TPR_10: Tetratricopep 96.7 0.0047 1E-07 31.5 4.2 32 42-73 4-35 (42)
207 PF14938 SNAP: Soluble NSF att 96.7 0.0071 1.5E-07 44.4 6.4 96 5-102 74-176 (282)
208 PF13374 TPR_10: Tetratricopep 96.7 0.0069 1.5E-07 30.8 4.6 30 6-35 2-31 (42)
209 PF03704 BTAD: Bacterial trans 96.6 0.091 2E-06 34.4 13.4 88 8-102 8-117 (146)
210 KOG1130 Predicted G-alpha GTPa 96.6 0.0054 1.2E-07 47.8 5.7 65 5-69 194-264 (639)
211 COG3071 HemY Uncharacterized e 96.6 0.017 3.7E-07 44.3 8.3 76 19-102 307-382 (400)
212 PF14938 SNAP: Soluble NSF att 96.6 0.023 5.1E-07 41.6 8.8 86 5-97 154-248 (282)
213 PLN03077 Protein ECB2; Provisi 96.6 0.028 6E-07 47.2 10.0 87 7-102 626-712 (857)
214 KOG3081 Vesicle coat complex C 96.6 0.024 5.3E-07 41.6 8.3 70 7-83 208-278 (299)
215 COG0457 NrfG FOG: TPR repeat [ 96.6 0.086 1.9E-06 34.5 10.6 68 4-78 93-161 (291)
216 PLN03081 pentatricopeptide (PP 96.5 0.03 6.6E-07 45.9 9.5 64 6-76 494-557 (697)
217 KOG3081 Vesicle coat complex C 96.4 0.05 1.1E-06 40.1 9.0 71 20-97 187-257 (299)
218 PLN03081 pentatricopeptide (PP 96.4 0.024 5.1E-07 46.5 8.2 87 7-102 463-549 (697)
219 KOG2053 Mitochondrial inherita 96.3 0.093 2E-06 44.1 11.4 85 7-99 44-128 (932)
220 PF09986 DUF2225: Uncharacteri 96.3 0.089 1.9E-06 37.4 9.9 69 4-79 116-197 (214)
221 PF09613 HrpB1_HrpK: Bacterial 96.2 0.16 3.5E-06 34.6 10.1 83 7-96 11-93 (160)
222 COG4700 Uncharacterized protei 96.2 0.14 2.9E-06 36.2 9.8 63 10-79 93-156 (251)
223 KOG2376 Signal recognition par 96.1 0.34 7.4E-06 39.3 13.2 96 6-101 110-244 (652)
224 COG3629 DnrI DNA-binding trans 96.1 0.066 1.4E-06 39.6 8.7 77 3-79 150-226 (280)
225 PF12968 DUF3856: Domain of Un 96.0 0.059 1.3E-06 35.2 7.0 65 4-75 53-128 (144)
226 KOG2376 Signal recognition par 96.0 0.069 1.5E-06 43.1 8.7 62 8-79 81-142 (652)
227 COG4700 Uncharacterized protei 95.9 0.32 7E-06 34.4 10.9 71 5-82 123-195 (251)
228 COG5191 Uncharacterized conser 95.9 0.024 5.1E-07 42.8 5.5 80 4-90 105-185 (435)
229 PF10516 SHNi-TPR: SHNi-TPR; 95.9 0.018 3.9E-07 29.7 3.5 27 8-34 3-29 (38)
230 cd02682 MIT_AAA_Arch MIT: doma 95.7 0.21 4.5E-06 29.7 8.5 52 40-91 6-57 (75)
231 COG0457 NrfG FOG: TPR repeat [ 95.7 0.31 6.8E-06 31.7 10.3 65 8-79 169-234 (291)
232 PF15015 NYD-SP12_N: Spermatog 95.7 0.051 1.1E-06 42.5 6.7 57 6-62 228-284 (569)
233 PF10516 SHNi-TPR: SHNi-TPR; 95.7 0.037 8.1E-07 28.5 4.2 32 41-72 2-33 (38)
234 KOG2610 Uncharacterized conser 95.7 0.061 1.3E-06 41.1 6.9 59 4-62 173-231 (491)
235 KOG4340 Uncharacterized conser 95.7 0.022 4.7E-07 42.9 4.5 72 5-79 143-214 (459)
236 KOG0495 HAT repeat protein [RN 95.6 0.12 2.7E-06 42.5 8.9 91 5-102 684-774 (913)
237 KOG4814 Uncharacterized conser 95.6 0.25 5.4E-06 40.6 10.5 76 6-88 354-435 (872)
238 PF09613 HrpB1_HrpK: Bacterial 95.6 0.38 8.3E-06 32.7 9.9 83 2-93 40-122 (160)
239 PF10300 DUF3808: Protein of u 95.6 0.12 2.5E-06 40.9 8.6 75 3-84 264-342 (468)
240 PF12862 Apc5: Anaphase-promot 95.5 0.15 3.3E-06 31.2 7.3 56 15-77 7-71 (94)
241 KOG4507 Uncharacterized conser 95.4 0.11 2.4E-06 42.3 7.9 78 8-92 644-721 (886)
242 PLN03077 Protein ECB2; Provisi 95.4 0.26 5.6E-06 41.5 10.5 63 6-75 657-719 (857)
243 PF05843 Suf: Suppressor of fo 95.4 0.37 8.1E-06 35.4 10.3 70 5-81 34-104 (280)
244 PF10373 EST1_DNA_bind: Est1 D 95.3 0.14 3E-06 36.9 7.7 62 25-93 1-62 (278)
245 PF07720 TPR_3: Tetratricopept 95.3 0.082 1.8E-06 26.8 4.6 33 7-39 2-36 (36)
246 PF05843 Suf: Suppressor of fo 95.2 0.44 9.5E-06 35.0 10.1 85 7-98 2-87 (280)
247 PLN03218 maturation of RBCL 1; 95.2 0.35 7.5E-06 42.1 10.8 55 8-62 581-636 (1060)
248 COG3947 Response regulator con 95.1 0.26 5.6E-06 37.0 8.5 74 6-79 279-352 (361)
249 KOG3785 Uncharacterized conser 95.1 0.19 4E-06 38.8 8.0 72 11-89 156-227 (557)
250 PF14561 TPR_20: Tetratricopep 95.0 0.29 6.3E-06 30.0 7.4 38 2-39 18-55 (90)
251 PF10300 DUF3808: Protein of u 94.9 0.18 3.8E-06 39.9 7.7 75 3-77 302-377 (468)
252 KOG1941 Acetylcholine receptor 94.8 0.81 1.8E-05 35.5 10.6 89 5-100 82-181 (518)
253 PF04184 ST7: ST7 protein; In 94.8 0.19 4.1E-06 40.0 7.5 55 8-62 261-317 (539)
254 COG3071 HemY Uncharacterized e 94.8 0.76 1.7E-05 35.5 10.5 90 5-101 117-207 (400)
255 KOG2053 Mitochondrial inherita 94.6 0.3 6.4E-06 41.3 8.5 78 18-102 21-98 (932)
256 KOG4340 Uncharacterized conser 94.6 0.41 8.9E-06 36.2 8.5 55 8-62 46-100 (459)
257 cd02683 MIT_1 MIT: domain cont 94.5 0.54 1.2E-05 28.0 8.4 42 41-82 7-48 (77)
258 KOG1915 Cell cycle control pro 94.5 0.63 1.4E-05 37.3 9.6 85 4-95 71-155 (677)
259 PLN03218 maturation of RBCL 1; 94.5 0.75 1.6E-05 40.1 10.9 56 7-62 508-564 (1060)
260 KOG4151 Myosin assembly protei 94.4 0.25 5.4E-06 41.0 7.6 84 4-94 89-174 (748)
261 PF07720 TPR_3: Tetratricopept 94.3 0.2 4.4E-06 25.4 4.6 23 40-62 1-23 (36)
262 COG4455 ImpE Protein of avirul 94.2 0.78 1.7E-05 33.2 8.8 61 15-82 10-70 (273)
263 PF04212 MIT: MIT (microtubule 94.0 0.63 1.4E-05 26.7 8.7 40 42-81 7-46 (69)
264 PRK04841 transcriptional regul 94.0 0.34 7.5E-06 40.7 8.0 64 9-79 694-763 (903)
265 PF07721 TPR_4: Tetratricopept 93.7 0.1 2.2E-06 24.2 2.6 22 41-62 2-23 (26)
266 PRK04841 transcriptional regul 93.7 1.5 3.2E-05 37.0 11.1 66 5-70 490-561 (903)
267 smart00745 MIT Microtubule Int 93.6 0.83 1.8E-05 26.7 8.3 39 44-82 12-50 (77)
268 TIGR02561 HrpB1_HrpK type III 93.6 1.5 3.2E-05 29.6 9.2 80 9-95 13-92 (153)
269 COG3118 Thioredoxin domain-con 93.4 0.96 2.1E-05 33.8 8.5 52 11-62 139-190 (304)
270 cd02677 MIT_SNX15 MIT: domain 93.4 0.95 2.1E-05 26.8 7.6 33 48-80 14-46 (75)
271 PF07721 TPR_4: Tetratricopept 93.4 0.14 3E-06 23.7 2.8 24 7-30 2-25 (26)
272 KOG1310 WD40 repeat protein [G 93.2 0.79 1.7E-05 37.1 8.2 78 18-102 386-466 (758)
273 KOG1586 Protein required for f 93.2 2.5 5.5E-05 30.9 11.2 91 5-102 153-252 (288)
274 PF14863 Alkyl_sulf_dimr: Alky 93.1 0.61 1.3E-05 31.1 6.5 52 8-59 72-123 (141)
275 PF02259 FAT: FAT domain; Int 93.1 1.5 3.1E-05 32.5 9.3 77 3-79 249-341 (352)
276 PF15015 NYD-SP12_N: Spermatog 93.0 2.6 5.6E-05 33.4 10.5 58 45-109 233-290 (569)
277 cd02678 MIT_VPS4 MIT: domain c 92.6 1.2 2.7E-05 26.1 8.4 41 42-82 8-48 (75)
278 TIGR02561 HrpB1_HrpK type III 92.4 0.41 8.8E-06 32.3 4.9 59 2-60 40-98 (153)
279 PF04184 ST7: ST7 protein; In 92.4 1.1 2.4E-05 35.9 7.9 54 40-100 259-314 (539)
280 PF10255 Paf67: RNA polymerase 92.3 3.4 7.4E-05 32.3 10.5 69 3-79 161-231 (404)
281 PF08424 NRDE-2: NRDE-2, neces 92.2 3.8 8.3E-05 30.7 10.7 62 22-90 47-108 (321)
282 PF08631 SPO22: Meiosis protei 92.2 1.9 4E-05 31.6 8.7 56 17-72 4-68 (278)
283 COG2976 Uncharacterized protei 92.1 2.3 4.9E-05 30.1 8.5 52 11-62 94-148 (207)
284 PF08424 NRDE-2: NRDE-2, neces 91.9 2.8 6.1E-05 31.4 9.6 71 27-97 6-81 (321)
285 PF07079 DUF1347: Protein of u 91.7 2.8 6.1E-05 33.4 9.4 49 13-62 469-517 (549)
286 KOG1941 Acetylcholine receptor 91.6 1.1 2.4E-05 34.8 7.0 67 4-70 204-276 (518)
287 PF04910 Tcf25: Transcriptiona 91.6 2.3 4.9E-05 32.6 8.8 74 3-83 37-140 (360)
288 cd02656 MIT MIT: domain contai 91.4 1.8 3.8E-05 25.2 8.3 38 44-81 10-47 (75)
289 PF13281 DUF4071: Domain of un 91.3 4 8.7E-05 31.6 9.8 86 5-97 140-233 (374)
290 COG3914 Spy Predicted O-linked 91.2 2.5 5.5E-05 34.4 8.9 75 12-92 73-147 (620)
291 KOG1915 Cell cycle control pro 91.1 7 0.00015 31.6 11.0 56 15-77 446-501 (677)
292 KOG3364 Membrane protein invol 90.9 0.53 1.2E-05 31.4 4.2 40 5-44 70-109 (149)
293 COG3118 Thioredoxin domain-con 90.9 3.4 7.3E-05 31.0 8.7 85 4-95 166-286 (304)
294 KOG2610 Uncharacterized conser 90.6 3.5 7.5E-05 31.9 8.7 88 7-101 138-229 (491)
295 PF14863 Alkyl_sulf_dimr: Alky 90.5 2.1 4.6E-05 28.5 6.9 54 40-100 70-123 (141)
296 KOG2471 TPR repeat-containing 90.3 0.66 1.4E-05 37.3 4.9 48 5-52 334-381 (696)
297 KOG1585 Protein required for f 90.1 5.4 0.00012 29.5 9.0 68 5-72 30-103 (308)
298 COG3914 Spy Predicted O-linked 90.1 4.5 9.8E-05 33.1 9.4 82 2-90 97-185 (620)
299 PF04910 Tcf25: Transcriptiona 89.9 2.2 4.7E-05 32.7 7.4 44 32-75 32-75 (360)
300 KOG1586 Protein required for f 89.7 6.5 0.00014 28.9 11.0 64 6-70 74-144 (288)
301 PF10255 Paf67: RNA polymerase 89.3 4.8 0.00011 31.5 8.9 63 11-74 127-198 (404)
302 KOG1070 rRNA processing protei 89.2 4.9 0.00011 36.2 9.5 66 7-79 1531-1596(1710)
303 TIGR03504 FimV_Cterm FimV C-te 89.2 1.1 2.3E-05 23.8 3.8 26 10-35 3-28 (44)
304 COG2976 Uncharacterized protei 88.9 5.4 0.00012 28.2 8.1 66 5-79 125-191 (207)
305 PF13281 DUF4071: Domain of un 88.9 4 8.8E-05 31.6 8.1 67 6-79 179-258 (374)
306 KOG1585 Protein required for f 88.7 8 0.00017 28.6 12.5 66 6-71 71-141 (308)
307 COG4105 ComL DNA uptake lipopr 88.4 8.1 0.00018 28.3 10.4 71 5-82 70-151 (254)
308 PF10602 RPN7: 26S proteasome 88.3 6.3 0.00014 27.0 11.8 66 4-69 34-102 (177)
309 TIGR03504 FimV_Cterm FimV C-te 88.1 2.5 5.3E-05 22.4 4.7 26 43-75 2-27 (44)
310 PF13041 PPR_2: PPR repeat fam 86.3 3.4 7.3E-05 21.7 5.9 39 6-44 3-42 (50)
311 cd02684 MIT_2 MIT: domain cont 85.8 5.3 0.00011 23.5 8.3 39 44-82 10-48 (75)
312 KOG2300 Uncharacterized conser 85.5 10 0.00022 30.7 8.7 66 4-69 443-514 (629)
313 smart00386 HAT HAT (Half-A-TPR 85.2 2.6 5.6E-05 19.4 4.1 30 20-49 1-30 (33)
314 PF12862 Apc5: Anaphase-promot 85.1 2.9 6.2E-05 25.4 4.7 33 5-37 40-72 (94)
315 PF02259 FAT: FAT domain; Int 84.7 14 0.0003 27.3 12.9 94 5-98 183-309 (352)
316 KOG2396 HAT (Half-A-TPR) repea 84.1 21 0.00045 29.0 9.9 63 25-94 90-152 (568)
317 PF11207 DUF2989: Protein of u 83.9 8.2 0.00018 27.4 6.9 54 6-60 141-198 (203)
318 KOG0529 Protein geranylgeranyl 83.9 16 0.00035 28.7 9.0 84 2-92 105-194 (421)
319 KOG0546 HSP90 co-chaperone CPR 83.6 3.6 7.9E-05 31.6 5.4 55 2-56 305-359 (372)
320 PF12854 PPR_1: PPR repeat 83.5 3.3 7.1E-05 20.2 3.6 27 5-31 6-32 (34)
321 PF09986 DUF2225: Uncharacteri 83.0 13 0.00029 26.3 7.9 82 21-102 92-186 (214)
322 PF01535 PPR: PPR repeat; Int 82.8 2.7 6E-05 19.2 3.2 28 8-35 2-29 (31)
323 PRK10941 hypothetical protein; 82.8 6 0.00013 29.2 6.2 55 40-101 181-235 (269)
324 PRK13184 pknD serine/threonine 81.8 19 0.00042 31.3 9.6 68 21-96 534-601 (932)
325 PF12968 DUF3856: Domain of Un 81.7 12 0.00027 24.6 13.2 76 7-82 8-97 (144)
326 KOG0530 Protein farnesyltransf 81.5 20 0.00043 26.8 9.0 70 20-96 57-127 (318)
327 KOG4814 Uncharacterized conser 81.4 12 0.00027 31.3 7.9 66 6-71 394-459 (872)
328 COG3947 Response regulator con 81.2 10 0.00022 28.8 6.8 55 40-101 279-333 (361)
329 KOG2581 26S proteasome regulat 80.8 24 0.00052 28.0 8.9 69 6-81 209-281 (493)
330 PF04781 DUF627: Protein of un 80.7 6.3 0.00014 25.2 5.0 47 23-76 61-107 (111)
331 PF04781 DUF627: Protein of un 80.5 12 0.00027 23.9 10.4 79 12-90 2-87 (111)
332 KOG0530 Protein farnesyltransf 80.0 22 0.00048 26.6 8.2 92 2-100 73-166 (318)
333 KOG3824 Huntingtin interacting 79.9 13 0.00028 28.5 7.1 48 41-95 117-164 (472)
334 PF11846 DUF3366: Domain of un 78.5 19 0.0004 24.7 7.5 50 22-79 127-176 (193)
335 COG4976 Predicted methyltransf 77.7 3.3 7.2E-05 30.3 3.3 38 3-40 26-63 (287)
336 KOG1464 COP9 signalosome, subu 77.6 28 0.00061 26.3 8.5 67 19-85 40-110 (440)
337 KOG2422 Uncharacterized conser 77.1 41 0.00088 27.9 11.8 82 3-91 281-387 (665)
338 COG4941 Predicted RNA polymera 76.7 26 0.00057 27.1 7.9 76 9-91 332-409 (415)
339 COG3629 DnrI DNA-binding trans 75.9 11 0.00024 28.1 5.7 57 38-101 151-207 (280)
340 PF11817 Foie-gras_1: Foie gra 75.6 23 0.0005 25.5 7.3 57 6-62 178-240 (247)
341 PF10579 Rapsyn_N: Rapsyn N-te 75.2 15 0.00033 22.0 9.9 59 4-62 4-65 (80)
342 cd02681 MIT_calpain7_1 MIT: do 74.3 15 0.00033 21.7 9.5 36 42-77 8-43 (76)
343 PF07219 HemY_N: HemY protein 74.0 19 0.00041 22.5 6.9 50 5-54 58-107 (108)
344 KOG0985 Vesicle coat protein c 73.0 62 0.0013 29.1 9.9 53 5-62 1103-1155(1666)
345 KOG4507 Uncharacterized conser 72.8 11 0.00024 31.2 5.5 56 7-62 213-271 (886)
346 PF04212 MIT: MIT (microtubule 71.7 14 0.00031 20.9 4.5 30 6-35 5-34 (69)
347 TIGR00756 PPR pentatricopeptid 71.5 8.8 0.00019 17.6 3.9 29 8-36 2-30 (35)
348 KOG1550 Extracellular protein 71.3 36 0.00078 27.6 8.2 74 8-92 290-371 (552)
349 KOG1070 rRNA processing protei 71.3 42 0.00091 30.8 8.8 84 6-96 1564-1649(1710)
350 cd02679 MIT_spastin MIT: domai 70.7 20 0.00043 21.4 8.5 36 43-78 11-46 (79)
351 KOG1914 mRNA cleavage and poly 70.2 29 0.00062 28.6 7.1 66 2-75 16-81 (656)
352 PF10345 Cohesin_load: Cohesin 70.0 57 0.0012 26.7 9.1 59 4-62 359-426 (608)
353 PF10579 Rapsyn_N: Rapsyn N-te 69.7 22 0.00047 21.4 8.2 54 38-98 4-57 (80)
354 KOG2047 mRNA splicing factor [ 67.5 65 0.0014 27.3 8.7 63 9-78 514-581 (835)
355 COG4649 Uncharacterized protei 67.2 31 0.00066 24.4 6.0 30 4-33 165-194 (221)
356 PF13812 PPR_3: Pentatricopept 67.0 12 0.00026 17.3 3.7 28 8-35 3-30 (34)
357 PF04053 Coatomer_WDAD: Coatom 66.8 63 0.0014 25.6 9.0 28 37-64 344-371 (443)
358 KOG1914 mRNA cleavage and poly 66.2 49 0.0011 27.3 7.7 65 30-102 10-74 (656)
359 cd02680 MIT_calpain7_2 MIT: do 66.2 19 0.00041 21.3 4.3 27 46-72 12-38 (75)
360 KOG3783 Uncharacterized conser 65.7 74 0.0016 26.0 9.8 67 9-82 452-526 (546)
361 cd02681 MIT_calpain7_1 MIT: do 64.5 24 0.00052 20.9 4.5 31 5-35 5-35 (76)
362 KOG2422 Uncharacterized conser 64.3 68 0.0015 26.6 8.2 58 19-76 251-320 (665)
363 PF08631 SPO22: Meiosis protei 64.1 54 0.0012 23.9 13.0 84 3-90 32-130 (278)
364 KOG2047 mRNA splicing factor [ 63.5 37 0.00081 28.6 6.7 64 6-76 387-454 (835)
365 PF12753 Nro1: Nuclear pore co 62.9 73 0.0016 25.0 8.0 54 22-77 334-392 (404)
366 KOG2300 Uncharacterized conser 62.6 85 0.0018 25.7 11.5 109 5-124 403-533 (629)
367 PF02064 MAS20: MAS20 protein 62.1 33 0.00072 22.2 5.2 37 44-87 67-103 (121)
368 KOG1550 Extracellular protein 62.1 65 0.0014 26.2 7.9 82 5-95 243-339 (552)
369 KOG3617 WD40 and TPR repeat-co 61.4 46 0.00099 29.1 7.0 72 5-77 911-1003(1416)
370 cd02683 MIT_1 MIT: domain cont 61.3 29 0.00063 20.5 4.5 30 5-34 5-34 (77)
371 COG2912 Uncharacterized conser 61.1 17 0.00036 27.0 4.0 48 2-49 211-258 (269)
372 KOG0529 Protein geranylgeranyl 60.8 82 0.0018 24.9 8.3 70 21-95 90-159 (421)
373 cd00280 TRFH Telomeric Repeat 60.3 22 0.00048 25.0 4.3 38 46-91 117-154 (200)
374 PF09205 DUF1955: Domain of un 59.9 51 0.0011 22.2 7.2 51 18-75 98-148 (161)
375 PF10602 RPN7: 26S proteasome 58.3 52 0.0011 22.5 6.0 34 39-79 35-68 (177)
376 KOG2041 WD40 repeat protein [G 57.1 51 0.0011 28.3 6.5 60 3-62 793-874 (1189)
377 cd02682 MIT_AAA_Arch MIT: doma 56.3 40 0.00087 19.9 7.3 38 5-42 5-49 (75)
378 PRK15490 Vi polysaccharide bio 56.1 1.2E+02 0.0025 25.2 9.5 53 8-62 44-96 (578)
379 PF15469 Sec5: Exocyst complex 54.8 65 0.0014 21.9 8.3 18 18-35 98-115 (182)
380 KOG4563 Cell cycle-regulated h 52.1 48 0.001 25.8 5.3 54 9-62 44-105 (400)
381 PF10952 DUF2753: Protein of u 51.8 68 0.0015 21.2 6.1 71 9-82 4-89 (140)
382 COG2015 Alkyl sulfatase and re 51.6 57 0.0012 26.6 5.8 53 10-62 456-508 (655)
383 PF01239 PPTA: Protein prenylt 51.6 26 0.00057 16.4 4.1 27 26-52 3-29 (31)
384 PF11207 DUF2989: Protein of u 51.5 86 0.0019 22.3 8.5 71 22-100 122-197 (203)
385 COG3898 Uncharacterized membra 51.3 1.2E+02 0.0025 24.3 7.3 49 17-65 165-213 (531)
386 PF09797 NatB_MDM20: N-acetylt 50.8 56 0.0012 24.8 5.6 44 20-63 197-240 (365)
387 PF11817 Foie-gras_1: Foie gra 50.8 60 0.0013 23.3 5.6 45 23-67 155-205 (247)
388 TIGR03362 VI_chp_7 type VI sec 50.8 1E+02 0.0023 23.1 7.5 47 18-65 111-157 (301)
389 smart00671 SEL1 Sel1-like repe 50.3 28 0.0006 16.3 3.8 30 7-36 2-35 (36)
390 PF10345 Cohesin_load: Cohesin 50.2 1.4E+02 0.0031 24.5 8.8 65 4-76 57-128 (608)
391 PHA02537 M terminase endonucle 49.8 36 0.00077 24.6 4.2 37 3-39 166-211 (230)
392 COG1747 Uncharacterized N-term 49.5 1.5E+02 0.0033 24.6 9.7 86 6-100 66-151 (711)
393 cd00280 TRFH Telomeric Repeat 49.5 58 0.0013 23.0 5.0 50 12-62 117-166 (200)
394 PHA02537 M terminase endonucle 49.2 53 0.0011 23.7 5.0 48 40-95 169-225 (230)
395 KOG2709 Uncharacterized conser 49.1 88 0.0019 25.0 6.4 33 42-74 24-56 (560)
396 KOG1839 Uncharacterized protei 49.0 36 0.00077 30.6 4.7 73 8-80 934-1013(1236)
397 COG2909 MalT ATP-dependent tra 48.9 1.8E+02 0.004 25.4 11.9 65 6-77 458-527 (894)
398 PF08238 Sel1: Sel1 repeat; I 48.6 32 0.00068 16.4 4.2 30 7-36 2-38 (39)
399 KOG2758 Translation initiation 48.5 1.3E+02 0.0028 23.4 7.6 60 3-62 126-189 (432)
400 COG0790 FOG: TPR repeat, SEL1 48.4 1E+02 0.0022 22.2 9.3 63 7-78 74-144 (292)
401 PF10373 EST1_DNA_bind: Est1 D 47.9 58 0.0013 23.1 5.2 51 2-52 12-62 (278)
402 cd09240 BRO1_Alix Protein-inte 47.1 1.3E+02 0.0027 23.0 8.0 40 40-79 255-294 (346)
403 COG5191 Uncharacterized conser 46.9 64 0.0014 24.9 5.2 43 37-86 104-146 (435)
404 COG0790 FOG: TPR repeat, SEL1 45.9 1.1E+02 0.0024 22.0 9.9 47 5-54 186-236 (292)
405 KOG2997 F-box protein FBX9 [Ge 44.9 60 0.0013 24.9 4.8 40 39-85 18-57 (366)
406 KOG4056 Translocase of outer m 44.6 67 0.0015 21.4 4.5 36 45-87 86-121 (143)
407 KOG0890 Protein kinase of the 44.0 86 0.0019 30.3 6.3 49 14-62 1457-1505(2382)
408 COG3898 Uncharacterized membra 43.7 1.7E+02 0.0037 23.4 8.7 53 20-79 243-295 (531)
409 PF11846 DUF3366: Domain of un 42.7 58 0.0013 22.2 4.3 33 5-37 143-175 (193)
410 KOG3617 WD40 and TPR repeat-co 42.6 2.5E+02 0.0053 25.0 11.0 95 8-102 860-988 (1416)
411 COG2015 Alkyl sulfatase and re 42.4 87 0.0019 25.6 5.5 54 42-102 454-507 (655)
412 KOG1839 Uncharacterized protei 41.8 1.6E+02 0.0035 26.7 7.5 61 2-62 969-1037(1236)
413 COG5107 RNA14 Pre-mRNA 3'-end 41.2 1.8E+02 0.0038 23.8 7.0 63 28-97 30-92 (660)
414 PRK15180 Vi polysaccharide bio 40.3 1.6E+02 0.0034 24.4 6.7 61 27-94 763-823 (831)
415 PF09205 DUF1955: Domain of un 40.1 80 0.0017 21.3 4.3 35 3-37 117-151 (161)
416 PF02064 MAS20: MAS20 protein 37.7 84 0.0018 20.3 4.1 29 11-39 68-96 (121)
417 PF06957 COPI_C: Coatomer (COP 37.4 2.1E+02 0.0046 22.7 7.8 25 10-34 208-232 (422)
418 KOG0985 Vesicle coat protein c 35.8 3.5E+02 0.0075 24.8 9.5 79 6-96 1220-1328(1666)
419 KOG0890 Protein kinase of the 35.6 2.6E+02 0.0055 27.4 7.9 66 3-77 1667-1732(2382)
420 KOG3783 Uncharacterized conser 35.1 2.6E+02 0.0056 23.1 8.4 42 3-45 300-341 (546)
421 COG4941 Predicted RNA polymera 34.9 1.3E+02 0.0028 23.5 5.2 40 8-47 367-406 (415)
422 KOG0686 COP9 signalosome, subu 34.7 2.2E+02 0.0047 22.8 6.5 56 7-62 188-251 (466)
423 TIGR00985 3a0801s04tom mitocho 34.2 1.3E+02 0.0027 20.3 4.7 36 45-87 95-131 (148)
424 KOG3677 RNA polymerase I-assoc 33.8 37 0.00081 27.0 2.3 24 10-33 276-299 (525)
425 PF04053 Coatomer_WDAD: Coatom 33.7 1.8E+02 0.004 23.1 6.2 28 5-32 346-373 (443)
426 COG5600 Transcription-associat 33.3 1.9E+02 0.0042 22.7 6.0 60 12-79 183-252 (413)
427 KOG0739 AAA+-type ATPase [Post 32.8 2.4E+02 0.0051 21.9 7.3 49 22-85 7-55 (439)
428 KOG2709 Uncharacterized conser 32.4 57 0.0012 26.1 3.1 63 7-72 23-97 (560)
429 cd09242 BRO1_ScBro1_like Prote 32.2 2.3E+02 0.0049 21.6 7.4 35 41-75 245-279 (348)
430 PRK13184 pknD serine/threonine 32.1 3.6E+02 0.0078 23.9 8.9 82 13-102 482-573 (932)
431 PF04840 Vps16_C: Vps16, C-ter 31.8 1.8E+02 0.004 21.9 5.7 52 6-62 208-259 (319)
432 KOG0889 Histone acetyltransfer 31.7 3.8E+02 0.0082 27.6 8.5 49 3-51 2809-2857(3550)
433 PF05944 Phage_term_smal: Phag 30.7 51 0.0011 21.7 2.3 25 18-42 60-84 (132)
434 cd09246 BRO1_Alix_like_1 Prote 30.3 2.5E+02 0.0054 21.4 8.2 38 40-77 247-284 (353)
435 PF15297 CKAP2_C: Cytoskeleton 30.1 1.2E+02 0.0026 23.5 4.4 36 4-39 138-173 (353)
436 KOG0292 Vesicle coat complex C 30.0 4E+02 0.0088 23.8 9.2 49 17-77 654-702 (1202)
437 KOG0276 Vesicle coat complex C 29.9 3.2E+02 0.0068 23.2 6.9 77 14-95 645-722 (794)
438 PF12455 Dynactin: Dynein asso 29.8 2.2E+02 0.0047 21.0 5.7 36 2-37 143-178 (274)
439 PF02184 HAT: HAT (Half-A-TPR) 29.7 79 0.0017 15.5 2.5 18 56-80 3-20 (32)
440 TIGR02996 rpt_mate_G_obs repea 29.0 96 0.0021 16.2 3.6 33 28-60 4-36 (42)
441 PF07980 SusD: SusD family; I 28.6 1.2E+02 0.0026 21.1 4.2 30 39-75 132-161 (266)
442 PF07079 DUF1347: Protein of u 28.4 3.3E+02 0.0071 22.2 7.8 58 5-62 5-101 (549)
443 PF06069 PerC: PerC transcript 28.3 1.5E+02 0.0032 18.2 5.0 68 45-119 5-76 (90)
444 COG5107 RNA14 Pre-mRNA 3'-end 28.2 3.4E+02 0.0074 22.3 6.8 46 2-47 38-83 (660)
445 cd09034 BRO1_Alix_like Protein 28.0 2.6E+02 0.0056 20.9 7.8 37 40-76 251-287 (345)
446 cd09241 BRO1_ScRim20-like Prot 28.0 2.8E+02 0.006 21.2 8.4 37 40-76 237-273 (355)
447 COG1747 Uncharacterized N-term 27.6 3.6E+02 0.0079 22.5 7.4 59 14-79 213-291 (711)
448 PF08771 Rapamycin_bind: Rapam 27.3 1.6E+02 0.0034 18.2 6.0 53 10-62 18-70 (100)
449 PF14689 SPOB_a: Sensor_kinase 27.3 1.2E+02 0.0026 16.8 4.3 34 29-62 12-45 (62)
450 PRK15180 Vi polysaccharide bio 26.6 3.8E+02 0.0081 22.3 8.7 44 19-62 302-345 (831)
451 COG4455 ImpE Protein of avirul 26.6 1.5E+02 0.0034 21.7 4.3 40 3-42 32-71 (273)
452 PF08311 Mad3_BUB1_I: Mad3/BUB 26.2 1.8E+02 0.004 18.6 8.3 39 24-62 81-121 (126)
453 PF15469 Sec5: Exocyst complex 25.6 2.2E+02 0.0047 19.2 7.4 24 51-74 97-120 (182)
454 KOG1811 Predicted Zn2+-binding 25.3 2.4E+02 0.0053 24.0 5.6 49 19-77 569-617 (1141)
455 KOG1766 Enhancer of rudimentar 25.0 1.5E+02 0.0033 18.5 3.5 44 54-97 20-64 (104)
456 KOG2880 SMAD6 interacting prot 24.6 3.5E+02 0.0075 21.2 7.9 52 44-95 39-90 (424)
457 KOG2460 Signal recognition par 24.5 4.1E+02 0.0089 22.0 7.2 34 43-76 425-458 (593)
458 KOG2997 F-box protein FBX9 [Ge 24.0 1.5E+02 0.0032 22.9 3.9 39 4-42 17-55 (366)
459 PF07980 SusD: SusD family; I 23.9 1.7E+02 0.0038 20.3 4.3 31 5-35 132-162 (266)
460 PF12583 TPPII_N: Tripeptidyl 22.8 2.4E+02 0.0052 18.7 4.5 32 20-51 90-121 (139)
461 PF08969 USP8_dimer: USP8 dime 22.7 1.9E+02 0.0041 18.0 3.9 39 40-79 38-76 (115)
462 PF04505 Dispanin: Interferon- 22.5 1.1E+02 0.0023 18.2 2.5 26 9-34 40-65 (82)
463 PF04190 DUF410: Protein of un 21.9 2.1E+02 0.0045 20.8 4.4 25 38-62 88-112 (260)
464 KOG1258 mRNA processing protei 21.9 4.7E+02 0.01 21.8 12.0 49 14-62 305-353 (577)
465 PF05131 Pep3_Vps18: Pep3/Vps1 21.6 52 0.0011 21.9 1.1 18 14-31 111-128 (147)
466 PF13310 Virulence_RhuM: Virul 21.5 2E+02 0.0043 21.3 4.1 39 62-100 96-134 (260)
467 PF09797 NatB_MDM20: N-acetylt 21.2 3.7E+02 0.0081 20.3 5.8 43 60-102 196-238 (365)
468 PF14852 Fis1_TPR_N: Fis1 N-te 20.8 1.3E+02 0.0028 14.9 3.7 30 8-37 3-35 (35)
469 KOG3807 Predicted membrane pro 20.7 4.3E+02 0.0093 20.9 6.3 46 11-56 280-327 (556)
470 KOG3616 Selective LIM binding 20.6 6E+02 0.013 22.5 8.0 65 5-69 660-736 (1636)
471 PF07219 HemY_N: HemY protein 20.4 2.3E+02 0.0049 17.5 5.3 34 39-79 58-91 (108)
472 PF05053 Menin: Menin; InterP 20.1 5.2E+02 0.011 21.6 8.4 68 24-92 297-369 (618)
473 KOG2034 Vacuolar sorting prote 20.1 1.5E+02 0.0033 25.8 3.7 47 13-63 365-412 (911)
No 1
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.78 E-value=3.2e-18 Score=118.95 Aligned_cols=113 Identities=55% Similarity=0.747 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
..++.+|.|+|.|+++++.++.|+.++.++|.++|.+-+++.+++.+|.++.+|++|+.+ |+++++.+|+..+
T Consensus 131 e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeD-------yKki~E~dPs~~e 203 (271)
T KOG4234|consen 131 EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALED-------YKKILESDPSRRE 203 (271)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHH-------HHHHHHhCcchHH
Confidence 568999999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh---hhhhhhHHHHHhh
Q 033182 83 AKRTILRLQPLAEEKLEKMKEEMIGKL---GNDFLLRFHFLLI 122 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 122 (125)
+...+.++-..+.++.++.+..++.++ ||.+++.||||+.
T Consensus 204 ar~~i~rl~~~i~ernEkmKee~m~kLKdlGN~iL~pFGlStd 246 (271)
T KOG4234|consen 204 AREAIARLPPKINERNEKMKEEMMEKLKDLGNFILSPFGLSTD 246 (271)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Confidence 999999999999999999999999998 9999999999974
No 2
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.67 E-value=2.8e-16 Score=114.26 Aligned_cols=91 Identities=33% Similarity=0.514 Sum_probs=87.1
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|.++++|+||+.+|.++|.|+.|+++++.++.+||.+.++|.++|.+|..+|++++|++. |+++++++|+|
T Consensus 110 l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a-------ykKaLeldP~N 182 (304)
T KOG0553|consen 110 LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA-------YKKALELDPDN 182 (304)
T ss_pred cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH-------HHhhhccCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKL 98 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~ 98 (125)
...+..|..+...+.+..
T Consensus 183 e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 183 ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 999999999888887765
No 3
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=2.8e-14 Score=107.39 Aligned_cols=100 Identities=38% Similarity=0.647 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
..+..++.|++.|+.++++|..|+..+++++.++|+|.+++|++|.++..+|+|+.|+.+ |+++++++|+|..
T Consensus 254 ~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~d-------f~ka~k~~P~Nka 326 (397)
T KOG0543|consen 254 ALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDD-------FQKALKLEPSNKA 326 (397)
T ss_pred HHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHH-------HHHHHHhCCCcHH
Confidence 467789999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhhh
Q 033182 83 AKRTILRLQPLAEEKLEKMK---EEMIGKL 109 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~---~~~~~~~ 109 (125)
+...|..+.+++.+..+.++ ..+|.+.
T Consensus 327 ~~~el~~l~~k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 327 ARAELIKLKQKIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999999998877765 5566655
No 4
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.56 E-value=3.1e-14 Score=83.16 Aligned_cols=67 Identities=34% Similarity=0.509 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch-hHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
++..|.++|.+++..|+|++|+..|++++.++|+++.+++++|.++..+| ++++|+.. ++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~-------~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIED-------FEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHH-------HHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHH-------HHHHHHcCc
Confidence 46789999999999999999999999999999999999999999999999 89999999 999999998
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=3e-13 Score=90.18 Aligned_cols=77 Identities=16% Similarity=0.101 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL 88 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~ 88 (125)
++++|.++.+.|++++|+..|.+++.++|.+..+|+++|.++..+|++++|+.. |+++++++|+++.++..++
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~-------y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINF-------YGHALMLDASHPEPVYQTG 99 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCCcHHHHHHH
Confidence 455556666666666666666666666666666666666666666666666666 6666666666655555555
Q ss_pred HHHH
Q 033182 89 RLQP 92 (125)
Q Consensus 89 ~~~~ 92 (125)
.+..
T Consensus 100 ~~l~ 103 (144)
T PRK15359 100 VCLK 103 (144)
T ss_pred HHHH
Confidence 5443
No 6
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.46 E-value=1.4e-12 Score=86.96 Aligned_cols=88 Identities=9% Similarity=0.058 Sum_probs=82.6
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|....+|.++|.++...|++++|+..|++++.++|.++.+++++|.++..+|++++|+.. |.++++++|++
T Consensus 53 ~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~-------~~~Al~~~p~~ 125 (144)
T PRK15359 53 AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREA-------FQTAIKMSYAD 125 (144)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCC
Confidence 35778899999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAE 95 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~ 95 (125)
+..+..++.+...++
T Consensus 126 ~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 126 ASWSEIRQNAQIMVD 140 (144)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999988888776554
No 7
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.43 E-value=1.1e-12 Score=75.76 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=60.7
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 10 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+.+|..+++.|+|++|+..|++++..+|.++.+++.+|.++..+|++++|+.. |+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAY-------YERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHH-------HHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCCC
Confidence 46899999999999999999999999999999999999999999999999999 999999999975
No 8
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.41 E-value=3e-12 Score=96.82 Aligned_cols=89 Identities=27% Similarity=0.420 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+++|.+|..+|++++|+.++++++.++|.++.+|+++|.++..+|+|++|+.. |+++++++|++.
T Consensus 32 ~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~-------~~~al~l~P~~~ 104 (356)
T PLN03088 32 DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAA-------LEKGASLAPGDS 104 (356)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHhCCCCH
Confidence 4667889999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEK 97 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~ 97 (125)
.+..++..+...+...
T Consensus 105 ~~~~~l~~~~~kl~~~ 120 (356)
T PLN03088 105 RFTKLIKECDEKIAEE 120 (356)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998887543
No 9
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.40 E-value=6.3e-12 Score=84.65 Aligned_cols=93 Identities=11% Similarity=0.048 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+..-...+.+|..++..|++++|...|+.+..+||.++..|+++|.|+..+|+|++|+.. |.+++.++|+++.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~a-------Y~~A~~L~~ddp~ 104 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYA-------YGRAAQIKIDAPQ 104 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCCch
Confidence 344567788999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
+....+.++-.+++...+.+
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~ 124 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIK 124 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 99999999988887766654
No 10
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.3e-12 Score=98.23 Aligned_cols=86 Identities=31% Similarity=0.583 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|.+++.|.|||.||.+++++..|+.+++++++++|++.++|++.|.++..+.+|+.|.+. |..+++.+|++.
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAlea-------y~eale~dp~~~ 460 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEA-------YQEALELDPSNA 460 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCchhH
Confidence 5889999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLA 94 (125)
Q Consensus 82 ~~~~~l~~~~~~~ 94 (125)
++...+.++..++
T Consensus 461 e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 461 EAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998865
No 11
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.36 E-value=2.4e-11 Score=79.19 Aligned_cols=94 Identities=15% Similarity=0.139 Sum_probs=87.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|......+.+|.++...|++++|...+++++..+|.++.+++++|.++..+|++++|... +++++.++|.+.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~p~~~ 85 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDA-------YALAAALDPDDP 85 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCCCCh
Confidence 5677788999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..+..++.++...++...+..
T Consensus 86 ~~~~~la~~~~~~g~~~~A~~ 106 (135)
T TIGR02552 86 RPYFHAAECLLALGEPESALK 106 (135)
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 999999999988887766654
No 12
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.34 E-value=2e-11 Score=82.21 Aligned_cols=72 Identities=15% Similarity=0.079 Sum_probs=67.6
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
++|..+..|+|+|.|+..+|+|++|+..|.+++.++|++++++++.|.|+..+|+.+.|... |+.++..-.+
T Consensus 64 ~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~a-------F~~Ai~~~~~ 135 (157)
T PRK15363 64 YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCYAIKA-------LKAVVRICGE 135 (157)
T ss_pred hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHhcc
Confidence 36788999999999999999999999999999999999999999999999999999999999 9888887633
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.33 E-value=2.3e-11 Score=79.25 Aligned_cols=86 Identities=20% Similarity=0.206 Sum_probs=78.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|.++|.++..+|+++.|+..+++++..+|+++..++++|.++...|++++|+.. |+++++++|++.
T Consensus 47 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~~~ 119 (135)
T TIGR02552 47 DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKA-------LDLAIEICGENP 119 (135)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhccccc
Confidence 4667889999999999999999999999999999999999999999999999999999999 999999999998
Q ss_pred HHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLA 94 (125)
Q Consensus 82 ~~~~~l~~~~~~~ 94 (125)
.......++...+
T Consensus 120 ~~~~~~~~~~~~~ 132 (135)
T TIGR02552 120 EYSELKERAEAML 132 (135)
T ss_pred hHHHHHHHHHHHH
Confidence 8776666665443
No 14
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.33 E-value=2.8e-11 Score=89.28 Aligned_cols=89 Identities=21% Similarity=0.200 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
++..|+++|.+|...|++++|+.+|+++++++|+++.+|+++|.++..+|++++|... |+++++++|++..++
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~Al~l~P~~~~a~ 135 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA-------FDSVLELDPTYNYAY 135 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCHHHH
Confidence 3566777777777777777777777777777777777777777777777777777777 777777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEK 100 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~ 100 (125)
..++.+....++..++
T Consensus 136 ~~lg~~l~~~g~~~eA 151 (296)
T PRK11189 136 LNRGIALYYGGRYELA 151 (296)
T ss_pred HHHHHHHHHCCCHHHH
Confidence 7766665555444443
No 15
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.26 E-value=7.1e-11 Score=82.70 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=87.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HHchh--HHHHHHhHHHHHHHHHHHHhhCC
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAH-EKLEH--FEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+|.++..|..+|.+|...|+++.|+..|+++++++|+++..+..+|.++ ...|+ +++|... ++++++.+|
T Consensus 69 ~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~-------l~~al~~dP 141 (198)
T PRK10370 69 NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREM-------IDKALALDA 141 (198)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHH-------HHHHHHhCC
Confidence 5778899999999999999999999999999999999999999999985 67787 5999999 999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++..++......++..++..
T Consensus 142 ~~~~al~~LA~~~~~~g~~~~Ai~ 165 (198)
T PRK10370 142 NEVTALMLLASDAFMQADYAQAIE 165 (198)
T ss_pred CChhHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999988888877766
No 16
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.24 E-value=7.6e-11 Score=69.32 Aligned_cols=70 Identities=26% Similarity=0.442 Sum_probs=65.0
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR 89 (125)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~ 89 (125)
...|++.++|+.|+..+++++.++|+++..++.+|.++..+|++++|... |+++++..|++..+......
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~-------l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALED-------LERALELSPDDPDARALRAM 71 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHH-------HHHHHHHCCCcHHHHHHHHh
Confidence 46788999999999999999999999999999999999999999999999 99999999999887766543
No 17
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.1e-10 Score=85.30 Aligned_cols=91 Identities=24% Similarity=0.298 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.+.-+-+-|+-+++.++|.+|+..|++||.++|+++..|.+++.+|.++|+|+.|+++ ++.++.+||....++
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkD-------ce~Al~iDp~yskay 152 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKD-------CESALSIDPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHH-------HHHHHhcChHHHHHH
Confidence 3444667788899999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~ 102 (125)
..++.++-.+++..++..
T Consensus 153 ~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HHHHHHHHccCcHHHHHH
Confidence 999999988877766654
No 18
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.23 E-value=6.3e-11 Score=68.73 Aligned_cols=66 Identities=29% Similarity=0.420 Sum_probs=60.6
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182 17 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR 89 (125)
Q Consensus 17 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~ 89 (125)
++.|+|++|+..|++++..+|++..+++.+|.++...|++++|... +++++..+|+++..+..++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEEL-------LERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHH-------HHCCHGGGTTHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999 99999999998877766654
No 19
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.23 E-value=7.4e-10 Score=65.35 Aligned_cols=87 Identities=32% Similarity=0.388 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI 87 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l 87 (125)
+++++|.++...|++++|+..+++++...|.+..+++.+|.++...+++++|... +++++...|.+..++..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~ 74 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALED-------YEKALELDPDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhCCCcchhHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999 999999999999888888
Q ss_pred HHHHHHHHHHHHHH
Q 033182 88 LRLQPLAEEKLEKM 101 (125)
Q Consensus 88 ~~~~~~~~~~~~~~ 101 (125)
+.+....++.....
T Consensus 75 ~~~~~~~~~~~~a~ 88 (100)
T cd00189 75 GLAYYKLGKYEEAL 88 (100)
T ss_pred HHHHHHHHhHHHHH
Confidence 88887777655443
No 20
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.1e-10 Score=90.44 Aligned_cols=84 Identities=33% Similarity=0.481 Sum_probs=80.8
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|.+.+.|.||+.+|...|+|++|+.+..+.+.++|+++++|.++|.++..+|+|++|+.. |...++.+|+|
T Consensus 31 l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a-------y~~GL~~d~~n 103 (539)
T KOG0548|consen 31 LSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA-------YSEGLEKDPSN 103 (539)
T ss_pred cCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH-------HHHHhhcCCch
Confidence 46778899999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHH
Q 033182 81 NQAKRTILRLQ 91 (125)
Q Consensus 81 ~~~~~~l~~~~ 91 (125)
......+..+.
T Consensus 104 ~~L~~gl~~a~ 114 (539)
T KOG0548|consen 104 KQLKTGLAQAY 114 (539)
T ss_pred HHHHHhHHHhh
Confidence 99999998887
No 21
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.20 E-value=2.3e-10 Score=90.71 Aligned_cols=91 Identities=21% Similarity=0.203 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+...+|+|++|.++|++++|...|.+++...|..+.++.|+|.+|..+|++++|+.+ |+.++++.|...+
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~-------YkealrI~P~fAd 423 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMC-------YKEALRIKPTFAD 423 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHH-------HHHHHhcCchHHH
Confidence 445556666666666666666666666666666666666666666666666666666666 6666666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~ 100 (125)
++.+++..++.+++-..+
T Consensus 424 a~~NmGnt~ke~g~v~~A 441 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAA 441 (966)
T ss_pred HHHhcchHHHHhhhHHHH
Confidence 666666666655554433
No 22
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=2e-10 Score=84.72 Aligned_cols=74 Identities=23% Similarity=0.269 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+++|.++...|++++|+..|+++++++|++..+++++|.++...|++++|+.. |+++++++|+++
T Consensus 94 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~-------~~~al~~~P~~~ 166 (296)
T PRK11189 94 RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDD-------LLAFYQDDPNDP 166 (296)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCH
Confidence 5778899999999999999999999999999999999999999999999999999999999 999999999987
Q ss_pred H
Q 033182 82 Q 82 (125)
Q Consensus 82 ~ 82 (125)
.
T Consensus 167 ~ 167 (296)
T PRK11189 167 Y 167 (296)
T ss_pred H
Confidence 4
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.19 E-value=4.6e-10 Score=89.99 Aligned_cols=80 Identities=23% Similarity=0.183 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
..|.++|.++...|++++|+..+++++.++|+++.+++++|.++..+|++++|+.. |+++++++|++..++..
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~kal~l~P~~~~~~~~ 438 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKD-------YQKSIDLDPDFIFSHIQ 438 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCccCHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444444 44444444444444444
Q ss_pred HHHHHHH
Q 033182 87 ILRLQPL 93 (125)
Q Consensus 87 l~~~~~~ 93 (125)
++.++..
T Consensus 439 la~~~~~ 445 (615)
T TIGR00990 439 LGVTQYK 445 (615)
T ss_pred HHHHHHH
Confidence 4444433
No 24
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.18 E-value=7.8e-10 Score=88.65 Aligned_cols=93 Identities=23% Similarity=0.272 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|....+|.++|.++..+|++++|+..+++++.++|.+..+|+.+|.++..+|++++|+.. |+++++++|+++.
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~-------~~~al~~~p~~~~ 400 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED-------FDKALKLNSEDPD 400 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCHH
Confidence 566788999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~ 420 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGK 420 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 99999999988877766554
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.14 E-value=2.9e-10 Score=90.17 Aligned_cols=92 Identities=21% Similarity=0.282 Sum_probs=75.8
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
|.|+-+.++.|+|+.|..+|+...|+.+|+++|..+|..++++.|+|.+|...|+..+|++. |+.++.+.|+.
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~s-------Y~~aLklkPDf 489 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQS-------YRTALKLKPDF 489 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHH-------HHHHHccCCCC
Confidence 35666778888888888888888888888888888888888888888888888888888888 88888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLE 99 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~ 99 (125)
+++.-++..+...+-++..
T Consensus 490 pdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 490 PDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred chhhhHHHHHHHHHhcccc
Confidence 8888888887777765543
No 26
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=8.1e-10 Score=87.80 Aligned_cols=89 Identities=15% Similarity=0.051 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|..+.++..+|.++...|++++|+..|++++.++|+++.+++.+|.++...|++++|+.. ++++++++|.+
T Consensus 333 ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~-------~~~Al~l~P~~ 405 (553)
T PRK12370 333 LDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQT-------INECLKLDPTR 405 (553)
T ss_pred cCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCC
Confidence 35778889999999999999999999999999999999999999999999999999999999 99999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEE 96 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~ 96 (125)
......+..+.-..++
T Consensus 406 ~~~~~~~~~~~~~~g~ 421 (553)
T PRK12370 406 AAAGITKLWITYYHTG 421 (553)
T ss_pred hhhHHHHHHHHHhccC
Confidence 7765544433333333
No 27
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.11 E-value=7.1e-10 Score=66.04 Aligned_cols=69 Identities=22% Similarity=0.336 Sum_probs=58.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----C---CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL----N---PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMK 71 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l----~---p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 71 (125)
|....++.++|.+|..+|+|++|+..|++++.+ + |..+.++.++|.++..+|++++|+.++++++.+++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 677899999999999999999999999999966 2 23477999999999999999999999555555543
No 28
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.11 E-value=1.3e-09 Score=82.51 Aligned_cols=87 Identities=25% Similarity=0.248 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL 88 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~ 88 (125)
+...|...+..|+|..|+..|++++.++|+++.+++++|.++..+|++++|+.. ++++++++|++..++..++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~-------~~~Al~l~P~~~~a~~~lg 77 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVAD-------ANKAIELDPSLAKAYLRKG 77 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcCCHHHHHHHH
Confidence 567789999999999999999999999999999999999999999999999999 9999999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 033182 89 RLQPLAEEKLEKMK 102 (125)
Q Consensus 89 ~~~~~~~~~~~~~~ 102 (125)
.++..+++..++..
T Consensus 78 ~~~~~lg~~~eA~~ 91 (356)
T PLN03088 78 TACMKLEEYQTAKA 91 (356)
T ss_pred HHHHHhCCHHHHHH
Confidence 99988887766655
No 29
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.6e-09 Score=76.90 Aligned_cols=91 Identities=23% Similarity=0.284 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
...+...+|.-|++.|++..|...++++++.||++..+|..++..|.++|+.+.|-+. |++|++++|++.++.
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~-------YrkAlsl~p~~GdVL 106 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADES-------YRKALSLAPNNGDVL 106 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHH-------HHHHHhcCCCccchh
Confidence 4567888999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~ 102 (125)
.+-+-.....+++.++..
T Consensus 107 NNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 107 NNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred hhhhHHHHhCCChHHHHH
Confidence 888888877776666554
No 30
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.09 E-value=1.2e-09 Score=86.43 Aligned_cols=94 Identities=20% Similarity=0.208 Sum_probs=82.4
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
+++..-.+||.+|.+|.++++++.|+-+|.+|+.++|.+.......|..+.++|+.++|++. |++|+.+||.+
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~-------~~~A~~ld~kn 556 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQL-------YEKAIHLDPKN 556 (638)
T ss_pred CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHH-------HHHHHhcCCCC
Confidence 35677789999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~ 101 (125)
+-..+..+.+.-.+.+..++-
T Consensus 557 ~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred chhHHHHHHHHHhhcchHHHH
Confidence 887777777766665554443
No 31
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.09 E-value=4.7e-10 Score=86.31 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA---LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
+|..+..|+|+|.+|+++|+|++|+..|++++.++|++..+ |+++|.+|..+|++++|+.+ +++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~-------LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADC-------LRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHh
Confidence 46778999999999999999999999999999999999865 99999999999999999999 6666654
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.08 E-value=3.7e-09 Score=72.80 Aligned_cols=92 Identities=18% Similarity=0.220 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+..++++|.++...|++++|+..+++++..+|++..++..+|.++..+|++++|... ++++++.+|.+..+
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~-------~~~al~~~~~~~~~ 101 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDS-------FRRALTLNPNNGDV 101 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCCCCHHH
Confidence 34678999999999999999999999999999999999999999999999999999999 99999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
...++.++...++..++..
T Consensus 102 ~~~~~~~~~~~g~~~~A~~ 120 (234)
T TIGR02521 102 LNNYGTFLCQQGKYEQAMQ 120 (234)
T ss_pred HHHHHHHHHHcccHHHHHH
Confidence 8888888777666655443
No 33
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.07 E-value=3.2e-09 Score=72.44 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+....+++++|..+...|++++|+..|++++..+|+. ..+++++|.++..+|++++|... ++++++.+|+
T Consensus 32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~ 104 (172)
T PRK02603 32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEY-------YHQALELNPK 104 (172)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcc
Confidence 5677889999999999999999999999999987753 57999999999999999999999 9999999999
Q ss_pred cHHHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLAEE 96 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~~~ 96 (125)
+...+..++.++..+++
T Consensus 105 ~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 105 QPSALNNIAVIYHKRGE 121 (172)
T ss_pred cHHHHHHHHHHHHHcCC
Confidence 99988888888766544
No 34
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.05 E-value=7.3e-09 Score=70.31 Aligned_cols=86 Identities=16% Similarity=0.134 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
.....+|+++|.++..+|++++|+..|++++.+.|+ .+.+++++|.++..+|++++|+.. ++++++++|.
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~-------~~~Al~~~~~ 104 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY-------YFQALERNPF 104 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcC
Confidence 345788999999999999999999999999999765 356999999999999999999999 9999999999
Q ss_pred cHHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLAE 95 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~~ 95 (125)
+..++..++.++..++
T Consensus 105 ~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 105 LPQALNNMAVICHYRG 120 (168)
T ss_pred cHHHHHHHHHHHHHhh
Confidence 9999888888887444
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.04 E-value=3.4e-09 Score=88.99 Aligned_cols=93 Identities=11% Similarity=0.060 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|. +.++.++|.++.+.|++++|+..+++++.++|+++.++.++|.++...|++++|+.. |+++++++|+++
T Consensus 606 ~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~-------l~~AL~l~P~~~ 677 (987)
T PRK09782 606 APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREM-------LERAHKGLPDDP 677 (987)
T ss_pred CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCH
Confidence 353 678889999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++..++..
T Consensus 678 ~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 678 ALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHH
Confidence 999999988888777665554
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.04 E-value=2.6e-09 Score=84.96 Aligned_cols=94 Identities=14% Similarity=0.030 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHHHhc---------CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLG---------KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~---------~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 72 (125)
+|..+.+|.++|.+|...+ ++++|+..++++++++|+++.++..+|.++...|++++|+.. |++
T Consensus 291 dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~ 363 (553)
T PRK12370 291 SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLL-------FKQ 363 (553)
T ss_pred CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHH
Confidence 5677888999999887543 489999999999999999999999999999999999999999 999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 73 ILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 73 a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+++++|++..++..++.++...++..++..
T Consensus 364 Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~ 393 (553)
T PRK12370 364 ANLLSPISADIKYYYGWNLFMAGQLEEALQ 393 (553)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999888877665544
No 37
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.03 E-value=7e-09 Score=65.47 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN-- 80 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~-- 80 (125)
...++..|..+.+.|++++|+..|.+++..+|++ ..+++.+|.++...|+++.|+.. |+.++...|++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~~~~p~~~~ 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKA-------FLAVVKKYPKSPK 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHH-------HHHHHHHCCCCCc
Confidence 3568999999999999999999999999999876 57999999999999999999999 99999998885
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 -NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 -~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..++..++.+....++......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~A~~ 97 (119)
T TIGR02795 75 APDALLKLGMSLQELGDKEKAKA 97 (119)
T ss_pred ccHHHHHHHHHHHHhCChHHHHH
Confidence 5678888888877766555444
No 38
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=6e-09 Score=80.25 Aligned_cols=95 Identities=20% Similarity=0.182 Sum_probs=57.4
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
|+|.+-.+|+.+|.+|--++-..=|+-.|.+|+.+.|.+++.|-.+|.||.++++.++|+.+ |++++...-.+
T Consensus 393 i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC-------ykrai~~~dte 465 (559)
T KOG1155|consen 393 INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC-------YKRAILLGDTE 465 (559)
T ss_pred cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH-------HHHHHhccccc
Confidence 34555556666666666666655566666666666666666666666666666666666666 66666665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..++..|+++++.+++..++..
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHH
Confidence 5666666666666655544433
No 39
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.5e-09 Score=81.25 Aligned_cols=90 Identities=30% Similarity=0.547 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+.+|.||+.+..+.|+..+|+.+++.++.+||.+.++++++|.|+..+++|++|+++ |+.+.+.+.+ .+.
T Consensus 285 ~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d-------~~~a~q~~~s-~e~ 356 (486)
T KOG0550|consen 285 TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVED-------YEKAMQLEKD-CEI 356 (486)
T ss_pred hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhhccc-cch
Confidence 46788999999999999999999999999999999999999999999999999999999 9999998877 777
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~ 101 (125)
...+.+....++......
T Consensus 357 r~~l~~A~~aLkkSkRkd 374 (486)
T KOG0550|consen 357 RRTLREAQLALKKSKRKD 374 (486)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 777877777776554443
No 40
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9.7e-09 Score=79.12 Aligned_cols=95 Identities=16% Similarity=0.165 Sum_probs=90.2
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
+||.-..+|.-+|.-|+++.+-..|+..|++|+.++|.+.++||.+|++|.-++-..-|+-+ |++|.++-|.+
T Consensus 359 LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyY-------fqkA~~~kPnD 431 (559)
T KOG1155|consen 359 LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYY-------FQKALELKPND 431 (559)
T ss_pred cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHH-------HHHHHhcCCCc
Confidence 46778889999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.-.+..|+.|+.++.+..++.+
T Consensus 432 sRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 432 SRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred hHHHHHHHHHHHHhccHHHHHH
Confidence 9999999999999998887776
No 41
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.2e-08 Score=79.16 Aligned_cols=93 Identities=24% Similarity=0.253 Sum_probs=69.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|.....|..||.+|.+.++-++...+|.++..+||.++..||.+|+.+.-+++|++|+.+ |++++.++|.+.-
T Consensus 357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aD-------F~Kai~L~pe~~~ 429 (606)
T KOG0547|consen 357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIAD-------FQKAISLDPENAY 429 (606)
T ss_pred cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHH-------HHHHhhcChhhhH
Confidence 334455778888888888888888888888888888888888888888888888888888 8888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..+.-+.-+.....+.++
T Consensus 430 ~~iQl~~a~Yr~~k~~~~m~ 449 (606)
T KOG0547|consen 430 AYIQLCCALYRQHKIAESMK 449 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77666666555555444444
No 42
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.97 E-value=6.7e-09 Score=72.72 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHHHHH-HHhcC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 1 MAELRSICHSNRGICF-LKLGK--FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~-~~~~~--~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
++|.++.++.++|.++ ...|+ +++|...++++++++|+++.+++++|.++...|+|++|+.. |+++++++
T Consensus 102 l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~-------~~~aL~l~ 174 (198)
T PRK10370 102 LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL-------WQKVLDLN 174 (198)
T ss_pred hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhC
Confidence 3577889999999975 67787 59999999999999999999999999999999999999999 99999999
Q ss_pred CCcHHHHHHHHHH
Q 033182 78 PSNNQAKRTILRL 90 (125)
Q Consensus 78 p~~~~~~~~l~~~ 90 (125)
|.+.+-...+.++
T Consensus 175 ~~~~~r~~~i~~i 187 (198)
T PRK10370 175 SPRVNRTQLVESI 187 (198)
T ss_pred CCCccHHHHHHHH
Confidence 8766544444443
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=6.2e-09 Score=80.65 Aligned_cols=95 Identities=17% Similarity=0.169 Sum_probs=87.7
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|.++.+|+.||..++-+++|++|+.+|++++.++|+++-++..++.+.+++++++++... |+.+.+.-|+.
T Consensus 389 ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~-------Fee~kkkFP~~ 461 (606)
T KOG0547|consen 389 LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKT-------FEEAKKKFPNC 461 (606)
T ss_pred cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhCCCC
Confidence 57889999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++++..-+.+.-..++...+.+
T Consensus 462 ~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 462 PEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred chHHHHHHHHHhhHHhHHHHHH
Confidence 9999888888776666666555
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.96 E-value=2.8e-08 Score=68.38 Aligned_cols=84 Identities=20% Similarity=0.291 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELN--PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..++.++|.++...|++++|+..+++++... |.....++++|.++...|++++|... +.++++.+|++..+
T Consensus 99 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~~~~~~~~~~~~ 171 (234)
T TIGR02521 99 GDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY-------LTRALQIDPQRPES 171 (234)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcCChHH
Confidence 3444555555555555555555555554432 23344445555555555555555555 55555555554444
Q ss_pred HHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEE 96 (125)
Q Consensus 84 ~~~l~~~~~~~~~ 96 (125)
+..++.++...++
T Consensus 172 ~~~la~~~~~~~~ 184 (234)
T TIGR02521 172 LLELAELYYLRGQ 184 (234)
T ss_pred HHHHHHHHHHcCC
Confidence 4444444444433
No 45
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.95 E-value=1.1e-08 Score=85.98 Aligned_cols=92 Identities=9% Similarity=-0.017 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.++.++|.++...|++++|+..++++++++|+++.+++++|.++..+|++++|... |+++++++|++.
T Consensus 639 ~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~-------l~~Al~l~P~~a 711 (987)
T PRK09782 639 EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHY-------ARLVIDDIDNQA 711 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCc
Confidence 5778899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~ 100 (125)
.+....+.+..+.......
T Consensus 712 ~i~~~~g~~~~~~~~~~~a 730 (987)
T PRK09782 712 LITPLTPEQNQQRFNFRRL 730 (987)
T ss_pred hhhhhhhHHHHHHHHHHHH
Confidence 9998888877666544433
No 46
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.93 E-value=3.6e-09 Score=64.01 Aligned_cols=57 Identities=33% Similarity=0.452 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
+..+++++|.|++++|+|++|+..+++ ...+|.++..++.+|.|+..+|+|++|+..
T Consensus 24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 677899999999999999999999999 889999999999999999999999999999
No 47
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.92 E-value=2.5e-08 Score=81.22 Aligned_cols=93 Identities=9% Similarity=-0.054 Sum_probs=68.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.|....++.+++.+..+.+++++|+..+++++..+|+++.+++.+|.++.++|++++|... |++++..+|++.
T Consensus 116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~-------y~~~~~~~p~~~ 188 (694)
T PRK15179 116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADAC-------FERLSRQHPEFE 188 (694)
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHH-------HHHHHhcCCCcH
Confidence 3556667777777777777777777777777777777777777777777777777777777 777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~ 101 (125)
.++..++.+.+..++..++.
T Consensus 189 ~~~~~~a~~l~~~G~~~~A~ 208 (694)
T PRK15179 189 NGYVGWAQSLTRRGALWRAR 208 (694)
T ss_pred HHHHHHHHHHHHcCCHHHHH
Confidence 77777777777666554443
No 48
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.91 E-value=1.2e-08 Score=82.67 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHH----HHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEE----SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~----A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
|....++.++|.++...|++++ |+..|++++.++|+++.++..+|.++..+|++++|+.. ++++++++|
T Consensus 243 p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~-------l~~al~l~P 315 (656)
T PRK15174 243 LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPL-------LQQSLATHP 315 (656)
T ss_pred CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCC
Confidence 4556778888999999998875 78889999999999999999999999999999999998 888888899
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+++.+...++.++...++..++..
T Consensus 316 ~~~~a~~~La~~l~~~G~~~eA~~ 339 (656)
T PRK15174 316 DLPYVRAMYARALRQVGQYTAASD 339 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHH
Confidence 998888888888877776665544
No 49
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.91 E-value=2.9e-08 Score=67.34 Aligned_cols=77 Identities=25% Similarity=0.193 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH-------HchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE-------KLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
.+.+|.++|.++...|++++|+..+++++.++|.+...+.++|.++. .+|+++.|...+..+..++++++..+
T Consensus 71 ~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~ 150 (168)
T CHL00033 71 RSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALA 150 (168)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhC
Confidence 45689999999999999999999999999999999999999999999 88999999999999999999999999
Q ss_pred CCcH
Q 033182 78 PSNN 81 (125)
Q Consensus 78 p~~~ 81 (125)
|.+.
T Consensus 151 p~~~ 154 (168)
T CHL00033 151 PGNY 154 (168)
T ss_pred cccH
Confidence 9654
No 50
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.90 E-value=3.6e-08 Score=80.32 Aligned_cols=93 Identities=8% Similarity=-0.049 Sum_probs=88.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+..+.++.++|.+..+.|.+++|...+++++.+.|++..++.+++.++.+++++++|+.. +++++..+|++..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~-------~~~~l~~~p~~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAE-------IELYFSGGSSSAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHH-------HHHHhhcCCCCHH
Confidence 345889999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
+...++.+..++++..++..
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred HHHHHHHHHHHhcchHHHHH
Confidence 99999999999998877765
No 51
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.89 E-value=2.1e-08 Score=63.20 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
..+++.+|.++.+.|+++.|+..+++++..+|++ +.+++.+|.++..+|++++|... ++++++..|++..
T Consensus 39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~~~~~~p~~~~ 111 (119)
T TIGR02795 39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT-------LQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH-------HHHHHHHCcCChh
Confidence 5688999999999999999999999999998875 68899999999999999999999 9999999999877
Q ss_pred HHHH
Q 033182 83 AKRT 86 (125)
Q Consensus 83 ~~~~ 86 (125)
+...
T Consensus 112 ~~~~ 115 (119)
T TIGR02795 112 AKLA 115 (119)
T ss_pred HHHH
Confidence 6544
No 52
>PRK15331 chaperone protein SicA; Provisional
Probab=98.89 E-value=6.4e-08 Score=65.70 Aligned_cols=92 Identities=9% Similarity=-0.078 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..-...+..|.-+++.|++++|...|.-+..+||.+++.++.+|.|+..+++|+.|++. |..+.-++++++..
T Consensus 35 ~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~-------Y~~A~~l~~~dp~p 107 (165)
T PRK15331 35 DMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDL-------YAVAFTLLKNDYRP 107 (165)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHcccCCCCc
Confidence 33455677777788888888888888888888888888888888888888888888888 88888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
.+..+.++..+++...+..
T Consensus 108 ~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred cchHHHHHHHhCCHHHHHH
Confidence 8888888888777766655
No 53
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.88 E-value=6.9e-09 Score=77.86 Aligned_cols=84 Identities=29% Similarity=0.511 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.|++++.+.||+.+|+++.+|..|..+|+.++.+|..+.++|.++|.+...+|+.++|..+ ++.+++++|.+.
T Consensus 127 ~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD-------~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 127 YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEAKKD-------CETVLALEPKNI 199 (536)
T ss_pred CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHh-------HHHHHhhCcccH
Confidence 4678888999999999999999999999999999999999999999999999999999999 999999999988
Q ss_pred HHHHHHHHHHH
Q 033182 82 QAKRTILRLQP 92 (125)
Q Consensus 82 ~~~~~l~~~~~ 92 (125)
+....++.+..
T Consensus 200 ELkK~~a~i~S 210 (536)
T KOG4648|consen 200 ELKKSLARINS 210 (536)
T ss_pred HHHHHHHHhcc
Confidence 87777766654
No 54
>PRK15331 chaperone protein SicA; Provisional
Probab=98.87 E-value=1.9e-08 Score=68.29 Aligned_cols=85 Identities=7% Similarity=-0.006 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
++.++..|.++|.|+..+++|++|+..|..+..++++++...+..|.|+..+|+.+.|... |..++. .|.+.
T Consensus 67 d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~-------f~~a~~-~~~~~ 138 (165)
T PRK15331 67 DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQC-------FELVNE-RTEDE 138 (165)
T ss_pred CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHH-------HHHHHh-CcchH
Confidence 5677889999999999999999999999999999999999999999999999999999999 988888 57766
Q ss_pred HHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLA 94 (125)
Q Consensus 82 ~~~~~l~~~~~~~ 94 (125)
.....-......+
T Consensus 139 ~l~~~A~~~L~~l 151 (165)
T PRK15331 139 SLRAKALVYLEAL 151 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 6554444443333
No 55
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.85 E-value=9.6e-09 Score=62.13 Aligned_cols=77 Identities=32% Similarity=0.378 Sum_probs=67.0
Q ss_pred HhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 18 KLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 18 ~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
.+|+|+.|+..+++++..+|. +...++.+|.|+..+|+|++|+.. +++ .+.+|.+......++.+.-.++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~-------~~~-~~~~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIEL-------LQK-LKLDPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHH-------HHC-HTHHHCHHHHHHHHHHHHHHTT
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHH-------HHH-hCCCCCCHHHHHHHHHHHHHhC
Confidence 368999999999999999995 577888899999999999999999 988 8889999899999999998888
Q ss_pred HHHHHHH
Q 033182 96 EKLEKMK 102 (125)
Q Consensus 96 ~~~~~~~ 102 (125)
+..++.+
T Consensus 73 ~y~eAi~ 79 (84)
T PF12895_consen 73 KYEEAIK 79 (84)
T ss_dssp -HHHHHH
T ss_pred CHHHHHH
Confidence 8876654
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.85 E-value=3.1e-09 Score=84.20 Aligned_cols=94 Identities=23% Similarity=0.260 Sum_probs=75.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----------------------------------hHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----------------------------------MKALIRRA 47 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----------------------------------~~~~~~~~ 47 (125)
+|..+..|+.+|+||--+++++.|++.|++++++||++ ..+||.+|
T Consensus 417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG 496 (638)
T KOG1126|consen 417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLG 496 (638)
T ss_pred CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhh
Confidence 46778889999999999999999999999988888743 46888888
Q ss_pred HHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 48 EAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+|+++++++.|.-. |++|+++||.+..+..-++.++.+.++.+.+-.
T Consensus 497 ~vy~Kqek~e~Ae~~-------fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFH-------FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQ 544 (638)
T ss_pred hheeccchhhHHHHH-------HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHH
Confidence 888888888888888 888888888888888888877777776655443
No 57
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.85 E-value=6.9e-08 Score=68.40 Aligned_cols=84 Identities=20% Similarity=0.090 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+..+..++++|..++..|+|+.|+..+++++..+|+++ .+++.+|.++...|++++|+.. ++++++..|+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~-------~~~~l~~~p~ 102 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAA-------ADRFIRLHPN 102 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHCcC
Confidence 45677899999999999999999999999999999875 6889999999999999999999 9999999998
Q ss_pred cHH---HHHHHHHHHHH
Q 033182 80 NNQ---AKRTILRLQPL 93 (125)
Q Consensus 80 ~~~---~~~~l~~~~~~ 93 (125)
++. ++..++.++..
T Consensus 103 ~~~~~~a~~~~g~~~~~ 119 (235)
T TIGR03302 103 HPDADYAYYLRGLSNYN 119 (235)
T ss_pred CCchHHHHHHHHHHHHH
Confidence 776 46666665543
No 58
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.85 E-value=3e-09 Score=81.93 Aligned_cols=90 Identities=30% Similarity=0.530 Sum_probs=84.3
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|..+.+|.+|+.++++.++|..|+.++.++++++|+..++|+++|.+++.++.+.+|... |+....+.|+.
T Consensus 33 ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~-------l~~~~~l~Pnd 105 (476)
T KOG0376|consen 33 LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD-------LEKVKKLAPND 105 (476)
T ss_pred cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH-------HHHhhhcCcCc
Confidence 35667788999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEK 97 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~ 97 (125)
+.+...+.++.....+.
T Consensus 106 ~~~~r~~~Ec~~~vs~~ 122 (476)
T KOG0376|consen 106 PDATRKIDECNKIVSEE 122 (476)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998877754
No 59
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.84 E-value=3.4e-08 Score=80.06 Aligned_cols=94 Identities=12% Similarity=0.031 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|....++.++|.++.+.|++++|+..+++++.++|+++.++.++|.++..+|++++|+.. |+++++.+|++.
T Consensus 280 ~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~-------l~~al~~~P~~~ 352 (656)
T PRK15174 280 NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDE-------FVQLAREKGVTS 352 (656)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCccch
Confidence 4667789999999999999999999999999999999999999999999999999999999 999999999987
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.....++.+....++..++..
T Consensus 353 ~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHH
Confidence 766666666666665554443
No 60
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=9.2e-08 Score=71.22 Aligned_cols=89 Identities=26% Similarity=0.430 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHH---Hh----
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKI---LE---- 75 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a---~~---- 75 (125)
+.+.++|.||+.|..-.|+|..|+.++.+++.++|++.+++++-+.|+..+.++++|..+++-++.+...+ ++
T Consensus 116 dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e~K~~~~l~~l 195 (390)
T KOG0551|consen 116 DLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDEAKKAIELRNL 195 (390)
T ss_pred cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999999999955555554332 22
Q ss_pred hCCCcHHHHHHHHHHH
Q 033182 76 FDPSNNQAKRTILRLQ 91 (125)
Q Consensus 76 l~p~~~~~~~~l~~~~ 91 (125)
++|++.........+.
T Consensus 196 ~~k~~~~~L~~er~~r 211 (390)
T KOG0551|consen 196 IHKNDKLKLIEERDVR 211 (390)
T ss_pred cCcchHHHHHHHHHHH
Confidence 2355555444444444
No 61
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.82 E-value=1.6e-07 Score=67.70 Aligned_cols=92 Identities=21% Similarity=0.216 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
.+..+....|...++.|+|.+|+..+.++..++|++.++|..+|.+|.+.|+++.|... |.+++++.|+++.+
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~a-------y~qAl~L~~~~p~~ 170 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRA-------YRQALELAPNEPSI 170 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHH-------HHHHHHhccCCchh
Confidence 34445556888889999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
..+++-.+..-++...+++
T Consensus 171 ~nNlgms~~L~gd~~~A~~ 189 (257)
T COG5010 171 ANNLGMSLLLRGDLEDAET 189 (257)
T ss_pred hhhHHHHHHHcCCHHHHHH
Confidence 9999888877776665555
No 62
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.82 E-value=5.1e-08 Score=57.26 Aligned_cols=70 Identities=37% Similarity=0.511 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
|....++..+|.++...++++.|+..+++++...|.+...++.+|.++...|+++.|... +.++++.+|+
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~~~~~~~~~~ 100 (100)
T cd00189 31 PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEA-------YEKALELDPN 100 (100)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHH-------HHHHHccCCC
Confidence 344578999999999999999999999999999999999999999999999999999999 9999888774
No 63
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.80 E-value=1.2e-07 Score=61.51 Aligned_cols=89 Identities=22% Similarity=0.176 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC---c
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS---N 80 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~---~ 80 (125)
.++++++.++-..|+.++|+..|++++..++.. .+++..+|.++..+|++++|+.. ++.++.-.|+ +
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~-------L~~~~~~~p~~~~~ 74 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALAL-------LEEALEEFPDDELN 74 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCcccc
Confidence 578999999999999999999999999987544 67999999999999999999999 9999998888 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..+...+..+....++.+++..
T Consensus 75 ~~l~~f~Al~L~~~gr~~eAl~ 96 (120)
T PF12688_consen 75 AALRVFLALALYNLGRPKEALE 96 (120)
T ss_pred HHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777766666666655443
No 64
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.79 E-value=1.4e-07 Score=64.31 Aligned_cols=76 Identities=28% Similarity=0.274 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-------HHHHHHhHHHHHHHHHHHHhhCC
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-------FEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
..++.++|.++...|++++|+..+++++..+|.+..++..+|.++..+|+ ++.|...++.++.+++++++++|
T Consensus 72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p 151 (172)
T PRK02603 72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAP 151 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCc
Confidence 56899999999999999999999999999999999999999999988665 67777777888888999999999
Q ss_pred CcH
Q 033182 79 SNN 81 (125)
Q Consensus 79 ~~~ 81 (125)
++-
T Consensus 152 ~~~ 154 (172)
T PRK02603 152 NNY 154 (172)
T ss_pred hhH
Confidence 873
No 65
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.78 E-value=6.9e-08 Score=70.31 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+.+|..+|.++.+.|++++|+..+++++.++|++..+...++.++...|+++++... ++...+..|+++..
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~-------l~~~~~~~~~~~~~ 216 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREA-------LKRLLKAAPDDPDL 216 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHH-------HHHHHHH-HTSCCH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHH-------HHHHHHHCcCHHHH
Confidence 45677888888888888888888888888888888888877777777777777777766 66666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
+..++.++..+++...+..
T Consensus 217 ~~~la~~~~~lg~~~~Al~ 235 (280)
T PF13429_consen 217 WDALAAAYLQLGRYEEALE 235 (280)
T ss_dssp CHHHHHHHHHHT-HHHHHH
T ss_pred HHHHHHHhccccccccccc
Confidence 6666666666666555444
No 66
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=2e-08 Score=78.70 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
.++.+...+|..|.-.++|+.|+.+|+.|+..+|++...|.++|.++---.+.++|+.. |.+|+++.|+..-+
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsA-------Y~rALqLqP~yVR~ 500 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISA-------YNRALQLQPGYVRV 500 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHH-------HHHHHhcCCCeeee
Confidence 46788889999999999999999999999999999999999999999999999999999 99999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
+.+++-...-++..+++.+
T Consensus 501 RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred ehhhhhhhhhhhhHHHHHH
Confidence 8888888888887776665
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.78 E-value=4.7e-08 Score=69.53 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=65.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS-- 79 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~-- 79 (125)
+|....+|.-++..|.+.|+.+.|.+.|++++.++|++...+.|.|-.++.+|+|++|..+ |++|+. +|.
T Consensus 65 DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~-------F~~Al~-~P~Y~ 136 (250)
T COG3063 65 DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQ-------FERALA-DPAYG 136 (250)
T ss_pred CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHH-------HHHHHh-CCCCC
Confidence 4666677888888888888888888888888888888888888888888888888888888 777766 343
Q ss_pred -cHHHHHHHHHHHHHHHHHHHH
Q 033182 80 -NNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 80 -~~~~~~~l~~~~~~~~~~~~~ 100 (125)
...++.+++-|..+.++...+
T Consensus 137 ~~s~t~eN~G~Cal~~gq~~~A 158 (250)
T COG3063 137 EPSDTLENLGLCALKAGQFDQA 158 (250)
T ss_pred CcchhhhhhHHHHhhcCCchhH
Confidence 344566666665555444433
No 68
>PLN02789 farnesyltranstransferase
Probab=98.75 E-value=2.1e-07 Score=69.66 Aligned_cols=92 Identities=20% Similarity=0.140 Sum_probs=67.1
Q ss_pred hhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH--HHHHHhHHHHHHHHHHHHhhCC
Q 033182 2 AELRSICHSNRGICFLKLG-KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF--EEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+|...++|..|+.++..+| ++++++..++++++.+|++..+|++++.++.++|.. ++++.. +.++++++|
T Consensus 67 nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~-------~~kal~~dp 139 (320)
T PLN02789 67 NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF-------TRKILSLDA 139 (320)
T ss_pred CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH-------HHHHHHhCc
Confidence 5667777888888777777 467788878888888888877888887777777763 556666 777777777
Q ss_pred CcHHHHHHHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~ 100 (125)
.|-.++...+-+...++...++
T Consensus 140 kNy~AW~~R~w~l~~l~~~~ee 161 (320)
T PLN02789 140 KNYHAWSHRQWVLRTLGGWEDE 161 (320)
T ss_pred ccHHHHHHHHHHHHHhhhHHHH
Confidence 7777777777777666655443
No 69
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=4.8e-08 Score=69.92 Aligned_cols=90 Identities=21% Similarity=0.360 Sum_probs=72.9
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|+-++.|-|++.||+++++|+.+..++.++++++|+-+++++.+|.+......|++|+..+|+++.+++.. .++| -
T Consensus 39 ~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~-~~~~-~ 116 (284)
T KOG4642|consen 39 INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ-PFTF-G 116 (284)
T ss_pred cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC-CCCC-c
Confidence 4678889999999999999999999999999999999999999999999999999999999966666665322 1222 2
Q ss_pred HHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQP 92 (125)
Q Consensus 81 ~~~~~~l~~~~~ 92 (125)
.++...|..+..
T Consensus 117 ~di~~~L~~ak~ 128 (284)
T KOG4642|consen 117 DDIPKALRDAKK 128 (284)
T ss_pred chHHHHHHHHHh
Confidence 345555555543
No 70
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.74 E-value=9.7e-08 Score=77.06 Aligned_cols=95 Identities=20% Similarity=0.173 Sum_probs=88.1
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHH--hHHHHHHHHHHHHhhCC
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA--GIQDLMIVMKKILEFDP 78 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~--~~~~~~~~~~~a~~l~p 78 (125)
+.+..+..|+-+|.++...|++++|...|..++.+||+++.+...+|.++...|+-.-|.. . +..+++++|
T Consensus 679 ~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~-------L~dalr~dp 751 (799)
T KOG4162|consen 679 IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSL-------LSDALRLDP 751 (799)
T ss_pred cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHH-------HHHHHhhCC
Confidence 3467788999999999999999999999999999999999999999999999999888888 8 999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.|.++|+.++.+.++.++..++..
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aae 775 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAE 775 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHH
Confidence 999999999999999998776554
No 71
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2e-08 Score=78.78 Aligned_cols=71 Identities=18% Similarity=0.271 Sum_probs=67.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+|.+...|..+|..+..-++.++|+..|.+|+++-|.+.+++||+|.+++.+|-|++|+.+ |-.|+.+.+.
T Consensus 460 ~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h-------lL~AL~mq~k 530 (579)
T KOG1125|consen 460 KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH-------LLEALSMQRK 530 (579)
T ss_pred CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH-------HHHHHHhhhc
Confidence 5788999999999999999999999999999999999999999999999999999999999 8888888765
No 72
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.74 E-value=3.7e-07 Score=62.79 Aligned_cols=93 Identities=24% Similarity=0.297 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH----HHHHHhHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKF----------EESIKECTKALELNPTYMKALIRRAEAHEKLEHF----EEAIAGIQDLM 67 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~----~~A~~~~~~~~ 67 (125)
+|.++..+++.|.++..+.++ ++|+.-|+.++.++|+...+++.+|.+|+.++.+ .+|...++++.
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 688999999999999887544 6688889999999999999999999999988874 34555567777
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182 68 IVMKKILEFDPSNNQAKRTILRLQPLA 94 (125)
Q Consensus 68 ~~~~~a~~l~p~~~~~~~~l~~~~~~~ 94 (125)
.-|+++...+|++...+..|....++-
T Consensus 101 ~~FqkAv~~~P~ne~Y~ksLe~~~kap 127 (186)
T PF06552_consen 101 EYFQKAVDEDPNNELYRKSLEMAAKAP 127 (186)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHTHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHhhH
Confidence 779999999999988877777665433
No 73
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.72 E-value=2.1e-07 Score=79.57 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=75.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH--------------HHHHHHHHHHHchhHHHHHHhHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMK--------------ALIRRAEAHEKLEHFEEAIAGIQDLM 67 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~--------------~~~~~~~~~~~~~~~~~A~~~~~~~~ 67 (125)
+|.++.++..+|.++.++|++++|+..|++++.++|++.. .....|.++...|++++|+..
T Consensus 299 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~----- 373 (1157)
T PRK11447 299 NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERL----- 373 (1157)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHH-----
Confidence 4566778888888888888888888888888888887642 123457778888888888888
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 68 IVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 68 ~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
|+++++++|++..++..++.++...++..++..
T Consensus 374 --~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~ 406 (1157)
T PRK11447 374 --YQQARQVDNTDSYAVLGLGDVAMARKDYAAAER 406 (1157)
T ss_pred --HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999888877766655
No 74
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.71 E-value=3.2e-07 Score=75.61 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|....++.++|.++...|++++|+..+++++.++|.++.+++.++.++...|++++|+.. ++++++.+|++..
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~-------l~~~l~~~P~~~~ 118 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVK-------AKQLVSGAPDKAN 118 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCHH
Confidence 344556777888888888888888888888888888888888888888888888888888 8888888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
+..++.+....++..++..
T Consensus 119 -~~~la~~l~~~g~~~~Al~ 137 (765)
T PRK10049 119 -LLALAYVYKRAGRHWDELR 137 (765)
T ss_pred -HHHHHHHHHHCCCHHHHHH
Confidence 7777777766665544443
No 75
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.71 E-value=1.6e-07 Score=76.86 Aligned_cols=92 Identities=17% Similarity=0.166 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
-...++.+++.+++..|+|.+|++.+..+....+ .+.-.|+++|.||..+|.+++|+.. |+.++.++|++.+
T Consensus 412 d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~-------y~kvl~~~p~~~D 484 (895)
T KOG2076|consen 412 DDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF-------YEKVLILAPDNLD 484 (895)
T ss_pred hhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCchh
Confidence 4577899999999999999999999999888876 4577999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..|++++..++.+.++..
T Consensus 485 ~Ri~Lasl~~~~g~~EkalE 504 (895)
T KOG2076|consen 485 ARITLASLYQQLGNHEKALE 504 (895)
T ss_pred hhhhHHHHHHhcCCHHHHHH
Confidence 99999999999988775543
No 76
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=3e-07 Score=66.29 Aligned_cols=90 Identities=31% Similarity=0.430 Sum_probs=76.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+.-+...+.|.+.|+...|+|-+++..++.++..+|+|.++||++|.++...=+..+|..+ |..+++++|.-.
T Consensus 226 dk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D-------~~~vL~ldpsla 298 (329)
T KOG0545|consen 226 DKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKAD-------LQKVLELDPSLA 298 (329)
T ss_pred HHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHH-------HHHHHhcChhhH
Confidence 3456778999999999999999999999999999999999999999999999999999999 999999999865
Q ss_pred H-HHHHHHHHHHHHHHHH
Q 033182 82 Q-AKRTILRLQPLAEEKL 98 (125)
Q Consensus 82 ~-~~~~l~~~~~~~~~~~ 98 (125)
. +...+..+..++.+.+
T Consensus 299 svVsrElr~le~r~~ek~ 316 (329)
T KOG0545|consen 299 SVVSRELRLLENRMAEKQ 316 (329)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 5 3444444444444433
No 77
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.2e-07 Score=67.33 Aligned_cols=101 Identities=19% Similarity=0.144 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH---HHHHHhHHHHHHHHHHHHhhCC
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF---EEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+|.++.-|.-+|.+|+.+|++..|+..|.+++++.|+++..+..+|.+++.+..- .++... +++++.+||
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l-------l~~al~~D~ 224 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL-------LRQALALDP 224 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH-------HHHHHhcCC
Confidence 5788889999999999999999999999999999999999999999999976543 456666 999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH--HHHHhhh
Q 033182 79 SNNQAKRTILRLQPLAEEKLEKMK--EEMIGKL 109 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~ 109 (125)
++..+.+.|+...-..++..++.. ..+++.+
T Consensus 225 ~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 225 ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 999999999998887777776665 4444444
No 78
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.69 E-value=2.1e-07 Score=75.37 Aligned_cols=91 Identities=23% Similarity=0.303 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|.....|..+|.++...|++++|+..|++++..+|.++.++..+|.++...|++++|... |+++++.+|++..
T Consensus 598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~ 670 (899)
T TIGR02917 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS-------LKRALELKPDNTE 670 (899)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCCCHH
Confidence 345667888888888888888888888888888888888888888888888888888888 8888888888888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~ 100 (125)
++..+..+....++..++
T Consensus 671 ~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHHHHHHHHHcCCHHHH
Confidence 777777776665555444
No 79
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.68 E-value=5.7e-07 Score=72.82 Aligned_cols=90 Identities=24% Similarity=0.218 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+.++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++++|... ++++++.+|.+..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~ 195 (899)
T TIGR02917 123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARAL-------IDEVLTADPGNVDA 195 (899)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCChHH
Confidence 34556677777777777777777777777777777777777777777777777777777 66666667776666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEK 100 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~ 100 (125)
+..++.+....++...+
T Consensus 196 ~~~~~~~~~~~g~~~~A 212 (899)
T TIGR02917 196 LLLKGDLLLSLGNIELA 212 (899)
T ss_pred HHHHHHHHHhcCCHHHH
Confidence 66666665555444333
No 80
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.67 E-value=1.7e-07 Score=80.11 Aligned_cols=93 Identities=10% Similarity=0.033 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+..+..+|.++.+.|++++|+..|++++..+|+++.++++++.++...|++++|+.. ++++++.+|++..
T Consensus 600 p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~-------l~~ll~~~p~~~~ 672 (1157)
T PRK11447 600 PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQ-------LAKLPATANDSLN 672 (1157)
T ss_pred CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHhccCCCChH
Confidence 445667899999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
+...++.+....++..++..
T Consensus 673 ~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 673 TQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred HHHHHHHHHHhCCCHHHHHH
Confidence 88888888877666655544
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.67 E-value=8e-07 Score=62.92 Aligned_cols=76 Identities=16% Similarity=0.240 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHc--------hhHHHHHHhHHHHHHHHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMK---ALIRRAEAHEKL--------EHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~~~~~~~~~~~--------~~~~~A~~~~~~~~~~~~~a~ 74 (125)
..+++.+|.++...|++++|+..++++++.+|+++. +++.+|.++... |+++.|+.. +++++
T Consensus 70 ~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~-------~~~~~ 142 (235)
T TIGR03302 70 EQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEA-------FQELI 142 (235)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHH-------HHHHH
Confidence 467899999999999999999999999999998776 799999999987 899999999 99999
Q ss_pred hhCCCcHHHHHHHH
Q 033182 75 EFDPSNNQAKRTIL 88 (125)
Q Consensus 75 ~l~p~~~~~~~~l~ 88 (125)
..+|++..+...+.
T Consensus 143 ~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 143 RRYPNSEYAPDAKK 156 (235)
T ss_pred HHCCCChhHHHHHH
Confidence 99999877654443
No 82
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=2.7e-07 Score=72.50 Aligned_cols=76 Identities=26% Similarity=0.291 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI 87 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l 87 (125)
.+.|+|.++.+.+.|++|+..+++++.+.|.++..+...|.+|..+|+++.|++. |.+++-++|++..+...|
T Consensus 457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~-------fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH-------FHKALALKPDNIFISELL 529 (611)
T ss_pred HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH-------HHHHHhcCCccHHHHHHH
Confidence 4889999999999999999999999999999999999999999999999999999 999999999998877777
Q ss_pred HHH
Q 033182 88 LRL 90 (125)
Q Consensus 88 ~~~ 90 (125)
..+
T Consensus 530 ~~a 532 (611)
T KOG1173|consen 530 KLA 532 (611)
T ss_pred HHH
Confidence 744
No 83
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=5.3e-07 Score=69.81 Aligned_cols=93 Identities=22% Similarity=0.153 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|.++.++.-++..+++.|+..+|.+.+++++.++|..+..++++|.++.+.|++.+|+.. +.+.+.-+|+++.
T Consensus 337 P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~-------L~~~~~~~p~dp~ 409 (484)
T COG4783 337 PDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRI-------LNRYLFNDPEDPN 409 (484)
T ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHH-------HHHHhhcCCCCch
Confidence 567888999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
.|..|+..+..+++..+...
T Consensus 410 ~w~~LAqay~~~g~~~~a~~ 429 (484)
T COG4783 410 GWDLLAQAYAELGNRAEALL 429 (484)
T ss_pred HHHHHHHHHHHhCchHHHHH
Confidence 99999999998887765554
No 84
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.64 E-value=1.4e-06 Score=63.57 Aligned_cols=89 Identities=9% Similarity=0.023 Sum_probs=74.3
Q ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--
Q 033182 7 ICHSNRGICF-LKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN-- 80 (125)
Q Consensus 7 ~~~~~~~~~~-~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~-- 80 (125)
..+++.+..+ ++.|+|++|+..|+..+...|+. +.+++.+|.+|...|++++|+.. |+++++..|++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~-------f~~vv~~yP~s~~ 215 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYY-------FASVVKNYPKSPK 215 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCCcc
Confidence 5677888876 56799999999999999999987 58999999999999999999999 99999888874
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 -NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 -~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++++..++.++...++...+..
T Consensus 216 ~~dAl~klg~~~~~~g~~~~A~~ 238 (263)
T PRK10803 216 AADAMFKVGVIMQDKGDTAKAKA 238 (263)
T ss_pred hhHHHHHHHHHHHHcCCHHHHHH
Confidence 6677777777766665555444
No 85
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.64 E-value=4.6e-07 Score=68.29 Aligned_cols=84 Identities=15% Similarity=0.173 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH-HHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN-QAKR 85 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~-~~~~ 85 (125)
.++.++|..+.+.|++++|+..+++++..+|+...+++.+|.++...|++++|... ++++++.+|.+. .+..
T Consensus 181 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~~~~~~p~~~~~~~~ 253 (389)
T PRK11788 181 HFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEA-------LERVEEQDPEYLSEVLP 253 (389)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHChhhHHHHHH
Confidence 35566777777777777777777777777777777777777777777777777777 666666666542 3344
Q ss_pred HHHHHHHHHHHH
Q 033182 86 TILRLQPLAEEK 97 (125)
Q Consensus 86 ~l~~~~~~~~~~ 97 (125)
.+..++...++.
T Consensus 254 ~l~~~~~~~g~~ 265 (389)
T PRK11788 254 KLMECYQALGDE 265 (389)
T ss_pred HHHHHHHHcCCH
Confidence 444444444333
No 86
>PLN02789 farnesyltranstransferase
Probab=98.63 E-value=3.5e-07 Score=68.52 Aligned_cols=86 Identities=20% Similarity=0.123 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 2 AELRSICHSNRGICFLKLGKF--EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+|....+|++|+.+..+.++. ++++..+++++..||++..+|..++-++..+|.|++|++. +.++++.+|.
T Consensus 102 npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~-------~~~~I~~d~~ 174 (320)
T PLN02789 102 NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEY-------CHQLLEEDVR 174 (320)
T ss_pred CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHCCC
Confidence 456677899999999999874 7789999999999999999999999999999999999999 9999999999
Q ss_pred cHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLA 94 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~ 94 (125)
|..++....-+....
T Consensus 175 N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 175 NNSAWNQRYFVITRS 189 (320)
T ss_pred chhHHHHHHHHHHhc
Confidence 999998888775443
No 87
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.63 E-value=7.8e-08 Score=70.03 Aligned_cols=94 Identities=17% Similarity=0.181 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|.++.+...++..++..|+++++...++......|+++..+..+|.++..+|++++|+.+ |+++++.+|+++
T Consensus 176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~-------~~~~~~~~p~d~ 248 (280)
T PF13429_consen 176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEY-------LEKALKLNPDDP 248 (280)
T ss_dssp -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHH-------HHHHHHHSTT-H
T ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccc-------cccccccccccc
Confidence 5778889999999999999999999999998888899999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+...++++....++..++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHHHHHHT----------
T ss_pred ccccccccccccccccccccc
Confidence 999999999988887766544
No 88
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.63 E-value=3e-07 Score=69.13 Aligned_cols=83 Identities=25% Similarity=0.390 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|.+-.+++.||.+|..+|+-..|+.++++++++.|++.-+...+|.+++++|++++|.++ |..+++-+|++.
T Consensus 68 dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~D-------F~~vl~~~~s~~ 140 (504)
T KOG0624|consen 68 DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEAD-------FDQVLQHEPSNG 140 (504)
T ss_pred CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHH-------HHHHHhcCCCcc
Confidence 4666678889999999999999999999999999999999999999999999999999999 999999999765
Q ss_pred HHHHHHHHHH
Q 033182 82 QAKRTILRLQ 91 (125)
Q Consensus 82 ~~~~~l~~~~ 91 (125)
......+++.
T Consensus 141 ~~~eaqskl~ 150 (504)
T KOG0624|consen 141 LVLEAQSKLA 150 (504)
T ss_pred hhHHHHHHHH
Confidence 5544444443
No 89
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.63 E-value=1.5e-07 Score=70.77 Aligned_cols=84 Identities=24% Similarity=0.284 Sum_probs=73.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL 88 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~ 88 (125)
.-.+|+.|+++|+|++|+.+|.+++..+|.|+..+.|++.+|.++..|..|..+ +..++.+|-....++.-..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~D-------C~~AiaLd~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEED-------CEAAIALDKLYVKAYSRRM 172 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHh-------HHHHHHhhHHHHHHHHHHH
Confidence 467899999999999999999999999999999999999999999999999999 9999999988777777666
Q ss_pred HHHHHHHHHHH
Q 033182 89 RLQPLAEEKLE 99 (125)
Q Consensus 89 ~~~~~~~~~~~ 99 (125)
.....++.-.+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 66666554433
No 90
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.62 E-value=4.2e-07 Score=65.47 Aligned_cols=95 Identities=16% Similarity=0.126 Sum_probs=88.4
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|.+..+|+.+|.+|.+.|++++|-..|.+++++.|..+....|+|..+.-.|+++.|... +.++....+.+
T Consensus 129 l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~l-------ll~a~l~~~ad 201 (257)
T COG5010 129 LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETL-------LLPAYLSPAAD 201 (257)
T ss_pred cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHH-------HHHHHhCCCCc
Confidence 35788999999999999999999999999999999999999999999999999999999999 99999988889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..+..++..+....++..+++.
T Consensus 202 ~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 202 SRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred hHHHHHHHHHHhhcCChHHHHh
Confidence 9999999998888887776665
No 91
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.61 E-value=1.2e-06 Score=72.16 Aligned_cols=90 Identities=11% Similarity=-0.113 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
..++..++..+...|++++|+..+++++...|.++..+..+|.++...|++++|+.. ++++++++|++.....
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~-------l~~al~l~Pd~~~l~~ 431 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENE-------LKKAEVLEPRNINLEV 431 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHhhCCCChHHHH
Confidence 457789999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 86 TILRLQPLAEEKLEKMK 102 (125)
Q Consensus 86 ~l~~~~~~~~~~~~~~~ 102 (125)
.++.+....++..+++.
T Consensus 432 ~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 432 EQAWTALDLQEWRQMDV 448 (765)
T ss_pred HHHHHHHHhCCHHHHHH
Confidence 99988888887776665
No 92
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.59 E-value=2.7e-07 Score=69.37 Aligned_cols=81 Identities=28% Similarity=0.468 Sum_probs=73.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 033182 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRL 90 (125)
Q Consensus 11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~ 90 (125)
-++.|+..-+++.+|+..|.+++..+|+++.++.-++.+|+.-..|++|+.. |+.+.+.+|++..+...+...
T Consensus 312 ~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~d-------ye~A~e~n~sn~~~reGle~A 384 (504)
T KOG0624|consen 312 VLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHD-------YEKALELNESNTRAREGLERA 384 (504)
T ss_pred eeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHhcCcccHHHHHHHHHH
Confidence 4567888889999999999999999999999999999999999999999999 999999999999999999887
Q ss_pred HHHHHHHH
Q 033182 91 QPLAEEKL 98 (125)
Q Consensus 91 ~~~~~~~~ 98 (125)
.+..+...
T Consensus 385 krlkkqs~ 392 (504)
T KOG0624|consen 385 KRLKKQSG 392 (504)
T ss_pred HHHHHHhc
Confidence 76555443
No 93
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.58 E-value=1.6e-07 Score=50.14 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE 48 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 48 (125)
+.+|..+|.+|..+|++++|++.|+++++.+|+++.++..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3578999999999999999999999999999999999999885
No 94
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.58 E-value=1.3e-07 Score=47.45 Aligned_cols=34 Identities=32% Similarity=0.586 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY 39 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 39 (125)
+.+|+++|.+|..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999974
No 95
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.57 E-value=5.2e-07 Score=52.18 Aligned_cols=58 Identities=21% Similarity=0.175 Sum_probs=52.1
Q ss_pred CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH-HHHHHHH
Q 033182 38 TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE-EKLEKMK 102 (125)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~-~~~~~~~ 102 (125)
.++..|+.+|.++...|+|++|+.. |+++++++|++..++..++.++...+ +..++..
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~-------~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEY-------FEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHH-------HHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHH
Confidence 3678999999999999999999999 99999999999999999999998887 5655543
No 96
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.57 E-value=9.7e-07 Score=66.51 Aligned_cols=90 Identities=13% Similarity=0.058 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-----HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYM-----KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
..++..++.++.+.|++++|+..+++++..+|.+. ..+..+|.++...|++++|... |+++++.+|++
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~al~~~p~~ 213 (389)
T PRK11788 141 EGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL-------LKKALAADPQC 213 (389)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH-------HHHHHhHCcCC
Confidence 34455555555555555555555555555554432 1344555555556666666666 77777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..++..++.++...++..++..
T Consensus 214 ~~~~~~la~~~~~~g~~~~A~~ 235 (389)
T PRK11788 214 VRASILLGDLALAQGDYAAAIE 235 (389)
T ss_pred HHHHHHHHHHHHHCCCHHHHHH
Confidence 7777777777766665554443
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.54 E-value=8.4e-07 Score=66.16 Aligned_cols=93 Identities=16% Similarity=0.063 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+....++..+|.++..+|++++|+..+++++.++|+++.+++.+|.++...|++++|+.. +.+++...|.++.
T Consensus 111 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~-------l~~~l~~~~~~~~ 183 (355)
T cd05804 111 PDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAF-------MESWRDTWDCSSM 183 (355)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH-------HHhhhhccCCCcc
Confidence 344566778899999999999999999999999999999999999999999999999999 9999988775332
Q ss_pred ----HHHHHHHHHHHHHHHHHHHH
Q 033182 83 ----AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ----~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+..+..++...++..+...
T Consensus 184 ~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 184 LRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHH
Confidence 34456677666665554443
No 98
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.53 E-value=1.6e-06 Score=63.36 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.+.+++-+|.+|+..|+|.+|+..|++++...|+ .+.+++.+|.++..+|+++.|... |+++++..|+..
T Consensus 179 a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~-------~~~vi~~yP~s~ 251 (263)
T PRK10803 179 QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAV-------YQQVIKKYPGTD 251 (263)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCCH
Confidence 3578999999999999999999999999998876 578999999999999999999999 999999999988
Q ss_pred HHHHHHHHH
Q 033182 82 QAKRTILRL 90 (125)
Q Consensus 82 ~~~~~l~~~ 90 (125)
.+.....++
T Consensus 252 ~a~~A~~rL 260 (263)
T PRK10803 252 GAKQAQKRL 260 (263)
T ss_pred HHHHHHHHH
Confidence 766555443
No 99
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.52 E-value=1.4e-07 Score=47.83 Aligned_cols=33 Identities=39% Similarity=0.418 Sum_probs=31.2
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHchhHHHHHH
Q 033182 29 CTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61 (125)
Q Consensus 29 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~ 61 (125)
|+++|+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999863
No 100
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1e-06 Score=67.36 Aligned_cols=93 Identities=23% Similarity=0.229 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+..-..|-++|+-.++.|+|..|...|..+|.+||++ ++.|.+++.+...+|+..+|+.+ ++.++.++|
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisd-------c~~Al~iD~ 318 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISD-------CNEALKIDS 318 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhh-------hhhhhhcCH
Confidence 4455678899999999999999999999999999964 77899999999999999999999 999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
....++...+.++..++++.++..
T Consensus 319 syikall~ra~c~l~le~~e~AV~ 342 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKWEEAVE 342 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988876654
No 101
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.50 E-value=3.9e-07 Score=48.65 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR 89 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~ 89 (125)
+.+++.+|.+|..+|++++|++. |+++++.+|+++.++..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~-------~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERL-------LRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCCHHHHHHhhh
Confidence 46789999999999999999999 99999999999999988765
No 102
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.49 E-value=2.2e-06 Score=70.33 Aligned_cols=91 Identities=19% Similarity=0.160 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.+|+.+|.+|.++|+.+.+....-.|--++|.+...|..++....++|++.+|.-+ |.+|++.+|.+..
T Consensus 170 p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c-------y~rAI~~~p~n~~ 242 (895)
T KOG2076|consen 170 PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC-------YSRAIQANPSNWE 242 (895)
T ss_pred ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH-------HHHHHhcCCcchH
Confidence 444455555555555555555555555555555555555555555555555555555555 5555555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~ 100 (125)
......++++..++...+
T Consensus 243 ~~~ers~L~~~~G~~~~A 260 (895)
T KOG2076|consen 243 LIYERSSLYQKTGDLKRA 260 (895)
T ss_pred HHHHHHHHHHHhChHHHH
Confidence 555555555554444333
No 103
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.48 E-value=1.1e-06 Score=69.75 Aligned_cols=77 Identities=16% Similarity=0.090 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+..+.+|.-+|..+...|++++|...+++++.++|+ ..+|..+|.++...|++++|++. |++|++++|.++.
T Consensus 417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~-------~~~A~~L~P~~pt 488 (517)
T PRK10153 417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADA-------YSTAFNLRPGENT 488 (517)
T ss_pred cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCCCch
Confidence 345577888899999999999999999999999995 78999999999999999999999 9999999999885
Q ss_pred HHHHHH
Q 033182 83 AKRTIL 88 (125)
Q Consensus 83 ~~~~l~ 88 (125)
+.++.
T Consensus 489 -~~~~~ 493 (517)
T PRK10153 489 -LYWIE 493 (517)
T ss_pred -HHHHH
Confidence 44443
No 104
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.48 E-value=3.5e-07 Score=45.88 Aligned_cols=34 Identities=32% Similarity=0.452 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
+++|+++|.++..+|++++|+.. |+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~-------~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEY-------YQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHH-------HHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHH-------HHHHHHHCcCC
Confidence 47899999999999999999999 99999999974
No 105
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.44 E-value=3.3e-06 Score=69.92 Aligned_cols=86 Identities=17% Similarity=0.223 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+..+..||.+|.+|-.+|+|++|..+|-++++.+|++ .-.++.+|+.+.+.|.++.|..+ |+++++..|++.
T Consensus 304 ~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~-------fEkv~k~~p~~~ 376 (1018)
T KOG2002|consen 304 SIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFC-------FEKVLKQLPNNY 376 (1018)
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHH-------HHHHHHhCcchH
Confidence 4567779999999999999999999999999999998 88999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAE 95 (125)
Q Consensus 82 ~~~~~l~~~~~~~~ 95 (125)
++...|+.++....
T Consensus 377 etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSA 390 (1018)
T ss_pred HHHHHHHhHHHhhh
Confidence 99999999987663
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.42 E-value=4.5e-06 Score=66.18 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
..++++.++.+|-..|++++|+...+++|...|+.++.|..+|.++-+.|++.+|... ++.+-++|+.+.-+.
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~-------~~~Ar~LD~~DRyiN 265 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEA-------MDEARELDLADRYIN 265 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhCChhhHHHH
Confidence 3567899999999999999999999999999999999999999999999999999999 999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHhh
Q 033182 85 RTILRLQPLAEEKLEKMK-EEMIGK 108 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~-~~~~~~ 108 (125)
.......-+.++-.++.+ ...|.+
T Consensus 266 sK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 266 SKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 888877766665555554 334433
No 107
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.41 E-value=1.9e-05 Score=57.24 Aligned_cols=85 Identities=19% Similarity=0.103 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch---hHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE---HFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
.+..+|..++..|+..|+|+.|.-+++.++-+.|.++..+.++|.+++-+| +++.|..+ |.++++++|.+
T Consensus 152 ~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arky-------y~~alkl~~~~ 224 (289)
T KOG3060|consen 152 NDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKY-------YERALKLNPKN 224 (289)
T ss_pred CcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHHhChHh
Confidence 467889999999999999999999999999999999999999999998665 55667777 99999999977
Q ss_pred HHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAE 95 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~ 95 (125)
--+++.+.-+...+-
T Consensus 225 ~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 225 LRALFGIYLCGSALA 239 (289)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777776665554
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=7.8e-07 Score=71.70 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=50.3
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 033182 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQP 92 (125)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~ 92 (125)
|......++|+++.++++..++++|-....||++|-|..+++++..|..+ |.+++.++|++.+++.++...+.
T Consensus 492 ~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~a-------F~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 492 ALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKA-------FHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred ccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHH-------HHHHhhcCCCchhhhhhhhHHHH
Confidence 33334456666666666666666666666666666666666666666666 66666666666666666666665
Q ss_pred HHHHHHHH
Q 033182 93 LAEEKLEK 100 (125)
Q Consensus 93 ~~~~~~~~ 100 (125)
..++..++
T Consensus 565 ~~~~k~ra 572 (777)
T KOG1128|consen 565 RLKKKKRA 572 (777)
T ss_pred HHhhhHHH
Confidence 55544444
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=1.8e-06 Score=69.62 Aligned_cols=95 Identities=18% Similarity=0.152 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
|+|.....|+++|.|..+.++++.|..+|.+++.++|++..+|.|++.+|..+++..+|... +.++++.+-++
T Consensus 514 ~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~-------l~EAlKcn~~~ 586 (777)
T KOG1128|consen 514 INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRK-------LKEALKCNYQH 586 (777)
T ss_pred cCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHH-------HHHHhhcCCCC
Confidence 46778889999999999999999999999999999999999999999999999999999999 99999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..++.+--.+.-.+++..++.+
T Consensus 587 w~iWENymlvsvdvge~eda~~ 608 (777)
T KOG1128|consen 587 WQIWENYMLVSVDVGEFEDAIK 608 (777)
T ss_pred CeeeechhhhhhhcccHHHHHH
Confidence 8888887777777777766655
No 110
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.39 E-value=1e-06 Score=43.92 Aligned_cols=34 Identities=35% Similarity=0.558 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY 39 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 39 (125)
+.+|+.+|.++..+|+|++|+..+++++.++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4689999999999999999999999999999985
No 111
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=7e-06 Score=62.50 Aligned_cols=88 Identities=25% Similarity=0.255 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---------------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNP---------------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 72 (125)
-.-.+|+.|++.|+|..|...|++++..=. ....++.|++.|+.+++.|..|+.. +.+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~-------c~k 282 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIES-------CNK 282 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHH-------HHH
Confidence 345689999999999999999999876521 1245899999999999999999999 999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 73 ILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 73 a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+++++|+|..+.+-.+.++..+.+.+.+..
T Consensus 283 vLe~~~~N~KALyRrG~A~l~~~e~~~A~~ 312 (397)
T KOG0543|consen 283 VLELDPNNVKALYRRGQALLALGEYDLARD 312 (397)
T ss_pred HHhcCCCchhHHHHHHHHHHhhccHHHHHH
Confidence 999999999999999999988888776655
No 112
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.35 E-value=1.4e-06 Score=43.35 Aligned_cols=34 Identities=38% Similarity=0.487 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
+++++.+|.++..+|++++|+.. |+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~-------~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEY-------FEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHH-------HHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHCcCC
Confidence 46899999999999999999999 99999999985
No 113
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=7.1e-06 Score=57.83 Aligned_cols=88 Identities=26% Similarity=0.275 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
+.-+-.-|+-++..|+|++|..-|..|+.+=|.. .-.|.|+|.|+++++.++.|+.. +.++++++|.+
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~d-------csKaiel~pty 167 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIED-------CSKAIELNPTY 167 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHH-------HHhhHhcCchh
Confidence 3445567888999999999999999999998864 45889999999999999999999 99999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~ 100 (125)
..+..-.+.++...+....+
T Consensus 168 ~kAl~RRAeayek~ek~eea 187 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEA 187 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHH
Confidence 88877777777666554443
No 114
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.33 E-value=4.7e-06 Score=60.15 Aligned_cols=73 Identities=12% Similarity=0.060 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH---HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA---LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.+..++..|..+++.|+|++|+..|++++...|..+.+ .+.+|.++.+.++|++|+.. +++.++..|+++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~-------~e~fi~~~P~~~ 103 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAA-------IDRFIRLNPTHP 103 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHhCcCCC
Confidence 45568889999999999999999999999999987554 49999999999999999999 999999999876
Q ss_pred HHH
Q 033182 82 QAK 84 (125)
Q Consensus 82 ~~~ 84 (125)
.+.
T Consensus 104 ~~~ 106 (243)
T PRK10866 104 NID 106 (243)
T ss_pred chH
Confidence 643
No 115
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.32 E-value=2.6e-05 Score=54.66 Aligned_cols=81 Identities=23% Similarity=0.236 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
.....++..|..+++.|+|.+|+..|++++...|. -..+.+.+|.++...|+|+.|+.. +++.++..|++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~-------~~~fi~~yP~~ 75 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAA-------YERFIKLYPNS 75 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHH-------HHHHHHH-TT-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCC
Confidence 35678899999999999999999999999999875 378999999999999999999999 99999999986
Q ss_pred HH---HHHHHHHHH
Q 033182 81 NQ---AKRTILRLQ 91 (125)
Q Consensus 81 ~~---~~~~l~~~~ 91 (125)
+. +...++...
T Consensus 76 ~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 76 PKADYALYMLGLSY 89 (203)
T ss_dssp TTHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHH
Confidence 54 555555543
No 116
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.32 E-value=1.7e-05 Score=59.22 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc-HH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN-NQ 82 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~-~~ 82 (125)
..+-+|+.++..+...++++.|...+.++++.||+++++..-+|.+....|+|+.|++. ++++++.||.. ++
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~-------~e~v~eQn~~yl~e 250 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEA-------LERVLEQNPEYLSE 250 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHH-------HHHHHHhChHHHHH
Confidence 35668899999999999999999999999999999999999999999999999999999 99999999985 56
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
+...|..++..+++..+...
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 88888889888887765544
No 117
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.31 E-value=2e-06 Score=69.64 Aligned_cols=75 Identities=21% Similarity=0.189 Sum_probs=68.6
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHH--HHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIK--ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
++|..+.+..-+|.++.+.|+-.-|.. ....++++||.+.++|+.+|.++.++|+.++|.++ |..++++++
T Consensus 713 ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaec-------f~aa~qLe~ 785 (799)
T KOG4162|consen 713 LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAEC-------FQAALQLEE 785 (799)
T ss_pred cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHH-------HHHHHhhcc
Confidence 467778888899999999999877777 99999999999999999999999999999999999 999999998
Q ss_pred CcHH
Q 033182 79 SNNQ 82 (125)
Q Consensus 79 ~~~~ 82 (125)
++|-
T Consensus 786 S~PV 789 (799)
T KOG4162|consen 786 SNPV 789 (799)
T ss_pred CCCc
Confidence 8753
No 118
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.31 E-value=1.3e-05 Score=63.37 Aligned_cols=108 Identities=20% Similarity=0.214 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKI 73 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a 73 (125)
+|.-++++.|+|.+|.+.|+|++|...+++++.+- |+-...+.+.+.++..++++++|...++.++-++..+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 46778899999999999999999999999998763 4556788999999999999999999999999998877
Q ss_pred HhhC-CCcHHHHHHHHHHHHHHHHHHHHHH--HHHHhhh
Q 033182 74 LEFD-PSNNQAKRTILRLQPLAEEKLEKMK--EEMIGKL 109 (125)
Q Consensus 74 ~~l~-p~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~ 109 (125)
+..+ |..+.++-.++.++...++..++.+ ...+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL 397 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 7654 3677899999999999998888776 4444444
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=1.5e-05 Score=52.87 Aligned_cols=90 Identities=16% Similarity=0.130 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
...+.+.+|.+++..|++++|...|++++...|+. ..+.++++.++..+|+|++|+.. ++. +.-.+-.+
T Consensus 47 a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~-------L~~-~~~~~~~~ 118 (145)
T PF09976_consen 47 AALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALAT-------LQQ-IPDEAFKA 118 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHh-ccCcchHH
Confidence 35667788999999999999999999999987654 56889999999999999999998 755 33344556
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+...+++++...++..++..
T Consensus 119 ~~~~~~Gdi~~~~g~~~~A~~ 139 (145)
T PF09976_consen 119 LAAELLGDIYLAQGDYDEARA 139 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHH
Confidence 677788888887776665543
No 120
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.28 E-value=6e-06 Score=68.81 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
....|..||..|.+.+++..|+.+|..+++.+|.+..+|..+|++|...|+|..|++. |.++..++|.+.-+.
T Consensus 561 ~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKv-------F~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 561 CKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKV-------FTKASLLRPLSKYGR 633 (1238)
T ss_pred HHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHh-------hhhhHhcCcHhHHHH
Confidence 4456778999999999999999999999999999999999999999999999999999 999999999999888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKM 101 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~ 101 (125)
+..+.+....++..+..
T Consensus 634 fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEAL 650 (1238)
T ss_pred HHHHHHHHHhhhHHHHH
Confidence 88888877777665543
No 121
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.28 E-value=3.2e-06 Score=60.22 Aligned_cols=84 Identities=19% Similarity=0.207 Sum_probs=74.7
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
|+|..+.+++-+|..+...|+|+.|.+.|+.++++||.+--++.|+|.+++--|+|.-|.+. +.+..+-||++
T Consensus 94 i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d-------~~~fYQ~D~~D 166 (297)
T COG4785 94 IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDD-------LLAFYQDDPND 166 (297)
T ss_pred cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHH-------HHHHHhcCCCC
Confidence 46788899999999999999999999999999999999999999999999999999999999 99999999998
Q ss_pred HHHHHHHHHHH
Q 033182 81 NQAKRTILRLQ 91 (125)
Q Consensus 81 ~~~~~~l~~~~ 91 (125)
+--..|+--..
T Consensus 167 PfR~LWLYl~E 177 (297)
T COG4785 167 PFRSLWLYLNE 177 (297)
T ss_pred hHHHHHHHHHH
Confidence 87555554443
No 122
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.27 E-value=3e-05 Score=51.59 Aligned_cols=76 Identities=22% Similarity=0.222 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
-...+++.|...++.|+|.+|+..++.+...-|. -..+.+.++-+|.+.++|++|+.. +++.++++|+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~-------~~rFirLhP~hp 81 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAA-------YDRFIRLHPTHP 81 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCCC
Confidence 3456899999999999999999999999999874 467999999999999999999999 999999999987
Q ss_pred HHHHHH
Q 033182 82 QAKRTI 87 (125)
Q Consensus 82 ~~~~~l 87 (125)
.+...+
T Consensus 82 ~vdYa~ 87 (142)
T PF13512_consen 82 NVDYAY 87 (142)
T ss_pred CccHHH
Confidence 754433
No 123
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.25 E-value=9.1e-06 Score=67.38 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELN--PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+|.|+|.||+.+|+|..|+..|+.+++-. .+++.....+|.+++..|.|.+|..+ +..+..+.|.++.+
T Consensus 680 ~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~-------ll~a~~~~p~~~~v 752 (1018)
T KOG2002|consen 680 EDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA-------LLKARHLAPSNTSV 752 (1018)
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHhCCccchH
Confidence 3679999999999999999999999998774 46788999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEK 100 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~ 100 (125)
.++++-+..++.+....
T Consensus 753 ~FN~a~v~kkla~s~lr 769 (1018)
T KOG2002|consen 753 KFNLALVLKKLAESILR 769 (1018)
T ss_pred HhHHHHHHHHHHHHHHh
Confidence 99998888777655433
No 124
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.23 E-value=3.5e-06 Score=65.59 Aligned_cols=92 Identities=17% Similarity=0.234 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
.++.+..|.|+.-+..|+++.|...|..++.-|....+++|+.|.++.++|+.++|+++ |-+...+--++.++
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~-------f~klh~il~nn~ev 560 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDC-------FLKLHAILLNNAEV 560 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHH-------HHHHHHHHHhhHHH
Confidence 34555666666666677777777777777777777777777777777777777777777 66666666666777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
...+..++..++++.++..
T Consensus 561 l~qianiye~led~aqaie 579 (840)
T KOG2003|consen 561 LVQIANIYELLEDPAQAIE 579 (840)
T ss_pred HHHHHHHHHHhhCHHHHHH
Confidence 7777777777666655544
No 125
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.20 E-value=7.4e-05 Score=49.46 Aligned_cols=86 Identities=23% Similarity=0.170 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc----HHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN----NQA 83 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~----~~~ 83 (125)
.+.-.|.+..+.|+.++|++-|.+++.+-|..+.+|.|+++++.-+|+.++|+++ +++++++..+- -.+
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdD-------Ln~AleLag~~trtacqa 117 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDD-------LNKALELAGDQTRTACQA 117 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHH-------HHHHHHhcCccchHHHHH
Confidence 3445667777889999999999999999999999999999999999999999999 99999886442 225
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEK 100 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~ 100 (125)
+...+.+++.+++.+.+
T Consensus 118 ~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 118 FVQRGLLYRLLGNDDAA 134 (175)
T ss_pred HHHHHHHHHHhCchHHH
Confidence 56666677666654433
No 126
>PRK11906 transcriptional regulator; Provisional
Probab=98.20 E-value=2.5e-05 Score=60.70 Aligned_cols=89 Identities=8% Similarity=-0.051 Sum_probs=73.4
Q ss_pred hhHHHHHHHHHHHHHHHh---------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKL---------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 72 (125)
+|..+.+|.-++.||+.. ..-.+|.+..++++++||.++.++..+|.++-..++++.|... |++
T Consensus 291 dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~-------f~r 363 (458)
T PRK11906 291 QTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHIL-------FEQ 363 (458)
T ss_pred CcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHH-------HHH
Confidence 455678888888888875 2356788889999999999999999999999999999999999 999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 73 ILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 73 a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
++.++|+...++...+-+.-.-++.
T Consensus 364 A~~L~Pn~A~~~~~~~~~~~~~G~~ 388 (458)
T PRK11906 364 AKIHSTDIASLYYYRALVHFHNEKI 388 (458)
T ss_pred HhhcCCccHHHHHHHHHHHHHcCCH
Confidence 9999999999888877755444433
No 127
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.19 E-value=3.3e-05 Score=51.01 Aligned_cols=78 Identities=21% Similarity=0.204 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
....+...++..+...|+++.|+..+.+++..+|.+-.+|..+..++...|+..+|+..|++....+..-+...|+..
T Consensus 60 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 60 LYLDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 345567788888899999999999999999999999999999999999999999999998888888888888888743
No 128
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.15 E-value=2.4e-05 Score=60.16 Aligned_cols=91 Identities=19% Similarity=0.107 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.+.+..-++.+++..++..+|++...+++..+|.+...+...+..+...++++.|+.. .++++++.|++-.+|
T Consensus 199 ~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~i-------Ak~av~lsP~~f~~W 271 (395)
T PF09295_consen 199 DPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEI-------AKKAVELSPSEFETW 271 (395)
T ss_pred CCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHhCchhHHHH
Confidence 3556677899999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~ 102 (125)
..|..++...++.+.+-.
T Consensus 272 ~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 272 YQLAECYIQLGDFENALL 289 (395)
T ss_pred HHHHHHHHhcCCHHHHHH
Confidence 999999999998876643
No 129
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4.9e-06 Score=59.76 Aligned_cols=86 Identities=22% Similarity=0.303 Sum_probs=74.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182 10 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR 89 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~ 89 (125)
..-|..++....|..|+..|.++|.++|..+..|-+++.||+++.+|+....+ .+++++++|+.......++.
T Consensus 14 kE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~d-------crralql~~N~vk~h~flg~ 86 (284)
T KOG4642|consen 14 KEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEED-------CRRALQLDPNLVKAHYFLGQ 86 (284)
T ss_pred HhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhh-------HHHHHhcChHHHHHHHHHHH
Confidence 34466677778899999999999999999999999999999999999999999 99999999999999988888
Q ss_pred HHHHHHHHHHHHH
Q 033182 90 LQPLAEEKLEKMK 102 (125)
Q Consensus 90 ~~~~~~~~~~~~~ 102 (125)
.....+...+..+
T Consensus 87 ~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 87 WLLQSKGYDEAIK 99 (284)
T ss_pred HHHhhccccHHHH
Confidence 7766655554443
No 130
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.14 E-value=6.4e-05 Score=51.87 Aligned_cols=75 Identities=21% Similarity=0.228 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH---HHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 21 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF---EEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 21 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
-|+.|.+.++.....||.++..+++-|.++..+.++ .++..+|+.++--|+.|+.++|+..++...++..+-.+.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 378899999999999999999999999999999888 457778999999999999999999999998888775554
No 131
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2e-05 Score=62.26 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|.++.-|+..|..|...|++++|.++|.++-.+||.+..+|...|.++-..|+.++|+.. |..|-++-|+.-.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaa-------Y~tAarl~~G~hl 381 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAA-------YFTAARLMPGCHL 381 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHH-------HHHHHHhccCCcc
Confidence 677888999999999999999999999999999999999999999999999999999999 8888888888766
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~ 101 (125)
....++.-+-+......++
T Consensus 382 P~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 382 PSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred hHHHHHHHHHHhccHHHHH
Confidence 5555555444444443333
No 132
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=2e-05 Score=61.54 Aligned_cols=91 Identities=18% Similarity=0.143 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
.-+.+++|+|..+..+|+.++|+.+|-+...+--++++.++.++.+|..+.+..+|+++ +.++..+-|+++.+
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~-------~~q~~slip~dp~i 594 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIEL-------LMQANSLIPNDPAI 594 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHH-------HHHhcccCCCCHHH
Confidence 34567999999999999999999999998888889999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~ 101 (125)
...|++++.+-++..++.
T Consensus 595 lskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 595 LSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHHHHHhhcccchhhhh
Confidence 999999998887766554
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.11 E-value=0.00029 Score=51.21 Aligned_cols=87 Identities=18% Similarity=0.096 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|++...+-..-.+..-+|+--+|++.....+..-+.+.++|..++..|...|.|++|.-+ +++++-++|.++
T Consensus 116 dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fC-------lEE~ll~~P~n~ 188 (289)
T KOG3060|consen 116 DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFC-------LEELLLIQPFNP 188 (289)
T ss_pred CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHH-------HHHHHHcCCCcH
Confidence 3666666776666666677777888888888888888888999999999999999999999 888888899888
Q ss_pred HHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAE 95 (125)
Q Consensus 82 ~~~~~l~~~~~~~~ 95 (125)
-....++++.--++
T Consensus 189 l~f~rlae~~Yt~g 202 (289)
T KOG3060|consen 189 LYFQRLAEVLYTQG 202 (289)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777664444
No 134
>PRK11906 transcriptional regulator; Provisional
Probab=98.10 E-value=1.7e-05 Score=61.56 Aligned_cols=75 Identities=19% Similarity=0.111 Sum_probs=69.9
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
+++.++-++..+|.+..-.++++.|...|++++.++|+.+.+|+..|..+...|+.++|.+. ++++++++|.-
T Consensus 333 ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~-------i~~alrLsP~~ 405 (458)
T PRK11906 333 ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARIC-------IDKSLQLEPRR 405 (458)
T ss_pred cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHhccCchh
Confidence 46778889999999999999999999999999999999999999999999999999999999 99999999975
Q ss_pred HH
Q 033182 81 NQ 82 (125)
Q Consensus 81 ~~ 82 (125)
..
T Consensus 406 ~~ 407 (458)
T PRK11906 406 RK 407 (458)
T ss_pred hH
Confidence 44
No 135
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.10 E-value=1.9e-05 Score=52.24 Aligned_cols=71 Identities=24% Similarity=0.247 Sum_probs=62.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
-|.++++|+||+.++.-+|+.++|+.++.+++.+.-.. -.++..+|..|..+|+-+.|..+ |+.+-++-
T Consensus 73 ~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~D-------Fe~AA~LG 145 (175)
T KOG4555|consen 73 APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARAD-------FEAAAQLG 145 (175)
T ss_pred cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHh-------HHHHHHhC
Confidence 36789999999999999999999999999999996433 35788899999999999999999 99998875
Q ss_pred CC
Q 033182 78 PS 79 (125)
Q Consensus 78 p~ 79 (125)
+.
T Consensus 146 S~ 147 (175)
T KOG4555|consen 146 SK 147 (175)
T ss_pred CH
Confidence 54
No 136
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=98.10 E-value=3.8e-05 Score=42.76 Aligned_cols=48 Identities=27% Similarity=0.293 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
+.+|.+|..+.++|+|+.|... .+.+++++|+|..+......+.+.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~-------~~~lL~~eP~N~Qa~~L~~~i~~~i~ 49 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRY-------CDALLEIEPDNRQAQSLKELIEDKIQ 49 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHH-------HHHHHHHTTS-HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHH-------HHHHHhhCCCcHHHHHHHHHHHHHHh
Confidence 4688999999999999999999 99999999999998887777766554
No 137
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.09 E-value=1.2e-05 Score=62.31 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=54.5
Q ss_pred cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH---HHHHHHHHHHHHHHHHHHH
Q 033182 35 LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA---KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 35 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~---~~~l~~~~~~~~~~~~~~~ 102 (125)
.+|+++.+|+++|.+|..+|+|++|+.. |+++++++|++.++ +.+++-++..+++..++..
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~-------f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla 133 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQ-------FETALELNPNPDEAQAAYYNKACCHAYREEGKKAAD 133 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4689999999999999999999999999 99999999999865 8999999988887665554
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.07 E-value=4.2e-05 Score=59.49 Aligned_cols=86 Identities=20% Similarity=0.101 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.|....++.++|.++++.|++.+|+..+...+..+|+++..|..++.+|..+|+-.+|... .-....+..+..
T Consensus 370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-------~AE~~~~~G~~~ 442 (484)
T COG4783 370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-------RAEGYALAGRLE 442 (484)
T ss_pred CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-------HHHHHHhCCCHH
Confidence 4667889999999999999999999999999999999999999999999999999999998 777777777777
Q ss_pred HHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLA 94 (125)
Q Consensus 82 ~~~~~l~~~~~~~ 94 (125)
.+...+....++.
T Consensus 443 ~A~~~l~~A~~~~ 455 (484)
T COG4783 443 QAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHHHhc
Confidence 7777666665554
No 139
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.06 E-value=2e-05 Score=44.92 Aligned_cols=52 Identities=25% Similarity=0.227 Sum_probs=47.1
Q ss_pred HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+.+|..+...|+|++|+.. |+++++.+|++..++..++.+....++..++..
T Consensus 1 ~~~a~~~~~~g~~~~A~~~-------~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 52 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAA-------FEQALKQDPDNPEAWYLLGRILYQQGRYDEALA 52 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHH-------HHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHH-------HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4689999999999999999 999999999999999999999998888877664
No 140
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.06 E-value=2.1e-05 Score=56.18 Aligned_cols=78 Identities=22% Similarity=0.292 Sum_probs=71.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
++.++..++.||..|=..|=+.-|.-+|++++.+.|+-+.++.-+|.-+..-|+|+.|.+. |...+++||++.
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~ea-------Fds~~ELDp~y~ 133 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA-------FDSVLELDPTYN 133 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHH-------hhhHhccCCcch
Confidence 3567889999999999999999999999999999999999999999999999999999999 999999999976
Q ss_pred HHHHH
Q 033182 82 QAKRT 86 (125)
Q Consensus 82 ~~~~~ 86 (125)
-+..+
T Consensus 134 Ya~lN 138 (297)
T COG4785 134 YAHLN 138 (297)
T ss_pred HHHhc
Confidence 65543
No 141
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=4e-05 Score=56.43 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 22 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
.+..+.-.+.-+..||++++.|..+|.+|+.+|++..|... |.+++++.|+++++...+.++.-.....
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~A-------Y~~A~rL~g~n~~~~~g~aeaL~~~a~~ 206 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLA-------YRNALRLAGDNPEILLGLAEALYYQAGQ 206 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHH-------HHHHHHhCCCCHHHHHHHHHHHHHhcCC
Confidence 56667778888999999999999999999999999999999 9999999999999999999887555443
No 142
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.04 E-value=0.00016 Score=55.48 Aligned_cols=88 Identities=15% Similarity=0.079 Sum_probs=74.6
Q ss_pred HHHHHH-HHHHHHhcCHHHHHHHHHHHHhcCCCChHHH-HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 7 ICHSNR-GICFLKLGKFEESIKECTKALELNPTYMKAL-IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 7 ~~~~~~-~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.+++-. +.+..++|+++.|...+.++.+.+|++..+. ...+..+...|+++.|... +++..+.+|+++.+.
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~-------l~~~~~~~P~~~~al 190 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG-------VDKLLEVAPRHPEVL 190 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCHHHH
Confidence 344444 5555889999999999999999999985443 4559999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKM 101 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~ 101 (125)
..+..++...+++.+..
T Consensus 191 ~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 191 RLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHHHHHHHHHHhHHHHH
Confidence 99999999988887665
No 143
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=6.2e-05 Score=58.04 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
.-|+--+.......+|+.|+...+++|..+|++..++...|..+..+++.++|+-. |+.+..+.|..-+.+..
T Consensus 301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia-------FR~Aq~Lap~rL~~Y~G 373 (564)
T KOG1174|consen 301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA-------FRTAQMLAPYRLEIYRG 373 (564)
T ss_pred hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH-------HHHHHhcchhhHHHHHH
Confidence 34666667777889999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHH--HHHHhhhhh--hhhhHHH
Q 033182 87 ILRLQPLAEEKLEKMK--EEMIGKLGN--DFLLRFH 118 (125)
Q Consensus 87 l~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~ 118 (125)
|-..+.+.+..+++.. .+.+..+++ ..+..||
T Consensus 374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g 409 (564)
T KOG1174|consen 374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG 409 (564)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence 9999999988877765 556666643 3344454
No 144
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.01 E-value=0.00011 Score=53.59 Aligned_cols=94 Identities=14% Similarity=0.102 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc---HH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN---NQ 82 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~---~~ 82 (125)
.|+.+.-+++.|+|..|...|..-++.-|+. +.++|-+|++++.+|+|++|... |..+.+-.|++ ++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~-------f~~~~k~~P~s~KApd 216 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYI-------FARVVKDYPKSPKAPD 216 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHH-------HHHHHHhCCCCCCChH
Confidence 7899999999999999999999999998865 78999999999999999999999 99999988875 45
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHhhh
Q 033182 83 AKRTILRLQPLAEEKLEKMK--EEMIGKL 109 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~--~~~~~~~ 109 (125)
+...|+.+...+++.+.+-. ..++.+.
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 66666666666665544433 4444444
No 145
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.00 E-value=7.1e-05 Score=49.82 Aligned_cols=75 Identities=17% Similarity=0.258 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchh---------------HHHHHHhHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEH---------------FEEAIAGIQDL 66 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~---------------~~~A~~~~~~~ 66 (125)
-..+-..++.+|++.++|+.|+..+++-++++|++ .-+++.+|.++..+.. ...|...
T Consensus 46 a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~---- 121 (142)
T PF13512_consen 46 AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRD---- 121 (142)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHH----
Confidence 34567889999999999999999999999999976 4589999999999877 7778888
Q ss_pred HHHHHHHHhhCCCcHHHHHH
Q 033182 67 MIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 67 ~~~~~~a~~l~p~~~~~~~~ 86 (125)
|++.++.-|++.-+...
T Consensus 122 ---f~~lv~~yP~S~ya~dA 138 (142)
T PF13512_consen 122 ---FEQLVRRYPNSEYAADA 138 (142)
T ss_pred ---HHHHHHHCcCChhHHHH
Confidence 88888888887665443
No 146
>PRK10941 hypothetical protein; Provisional
Probab=97.99 E-value=0.00017 Score=52.86 Aligned_cols=79 Identities=10% Similarity=0.116 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
......|+=.+|++.++++.|+++.+..+.++|+++.-+.-+|.+|.++|.+..|..+ ++..++..|+++.+.
T Consensus 180 l~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~D-------L~~fl~~~P~dp~a~ 252 (269)
T PRK10941 180 IRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSD-------LSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHH-------HHHHHHhCCCchhHH
Confidence 3456778899999999999999999999999999999999999999999999999999 999999999998876
Q ss_pred HHHHHH
Q 033182 85 RTILRL 90 (125)
Q Consensus 85 ~~l~~~ 90 (125)
.....+
T Consensus 253 ~ik~ql 258 (269)
T PRK10941 253 MIRAQI 258 (269)
T ss_pred HHHHHH
Confidence 554443
No 147
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.98 E-value=0.00022 Score=54.92 Aligned_cols=90 Identities=13% Similarity=0.038 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
...+.-.|.++.++|+++.|...+.++.+..|++. ......+..+...|+++.|... +++..+.+|+++.+.
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~-------l~~l~~~~P~~~~~l 190 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG-------VDKLLEMAPRHKEVL 190 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCHHHH
Confidence 34456677888888889999888888888888775 4556678888889999999988 889999999999988
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~ 102 (125)
..+..++...+++.....
T Consensus 191 ~ll~~~~~~~~d~~~a~~ 208 (409)
T TIGR00540 191 KLAEEAYIRSGAWQALDD 208 (409)
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 888888888888765544
No 148
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.98 E-value=0.00017 Score=60.21 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=51.9
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 033182 12 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQ 91 (125)
Q Consensus 12 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~ 91 (125)
.|..+..+|+|..|+..|+++++.+|+++.+++.++.++...++.++|+.. ++++...+|.+... ..+..+.
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~-------l~~l~~~dp~~~~~-l~layL~ 179 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQ-------ATELAERDPTVQNY-MTLSYLN 179 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHH-------HHHhcccCcchHHH-HHHHHHH
Confidence 355777777777888888888888887777777777777777777777777 77777777775554 4444444
No 149
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.98 E-value=0.00011 Score=58.22 Aligned_cols=99 Identities=22% Similarity=0.172 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
+..+..+.|+|.+|..+|+|.+|.+.+++++++. +.....+-++|..+..++++.+|.+.+..+..|+ +..
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~ 442 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLC 442 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHh
Confidence 4567789999999999999999999999999875 3446788899999999999999999988888887 444
Q ss_pred h-hCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 75 E-FDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 75 ~-l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
. -.|+...++.+|..++..+++...+.+
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 4 356778899999999999998877766
No 150
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.97 E-value=0.00011 Score=47.58 Aligned_cols=60 Identities=22% Similarity=0.140 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
+.+..++.++|.++...|++++|+..+++++...|+ +......++.++...|++++|+..
T Consensus 35 ~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~ 97 (120)
T PF12688_consen 35 ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEW 97 (120)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 456778999999999999999999999999999888 888889999999999999999998
No 151
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.97 E-value=2.3e-05 Score=45.61 Aligned_cols=47 Identities=30% Similarity=0.484 Sum_probs=42.1
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA 47 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 47 (125)
++|..+..|..+|.++.++|+|.+|..+++++++.+|+++.+...++
T Consensus 24 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 24 LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 35788999999999999999999999999999999999888765544
No 152
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.96 E-value=1.8e-05 Score=39.38 Aligned_cols=33 Identities=39% Similarity=0.552 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTY 39 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 39 (125)
.+|+.+|.+|.++|++++|+..|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 578999999999999999999999999999854
No 153
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.95 E-value=0.0002 Score=59.78 Aligned_cols=92 Identities=11% Similarity=-0.043 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
.-......++.++.-.|++.+|+..+++.+...|.|...+..+|.++...|.+..|... ++.+..++|++..+
T Consensus 414 d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~-------~k~a~~l~P~~~~~ 486 (822)
T PRK14574 414 DWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQE-------LKAVESLAPRSLIL 486 (822)
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHH-------HHHHhhhCCccHHH
Confidence 33466778889999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
..........+++..+.+.
T Consensus 487 ~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 487 ERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHHHHHHHhhhhHHHHHH
Confidence 9999999999988887765
No 154
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.92 E-value=2.1e-05 Score=39.10 Aligned_cols=34 Identities=32% Similarity=0.492 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
.++|+.+|.++..+|++++|... |+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~-------~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEY-------FEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHH-------HHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCCCC
Confidence 36899999999999999999999 99999999853
No 155
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00033 Score=52.62 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPT----YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+.-|-.-|+-|++..+|..|+..|++.|+-... ++..|.|++.|...+|+|..|+.+ ..++++++|.+.
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~D-------cs~al~~~P~h~ 153 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALND-------CSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHH-------HHHHHhcCcchh
Confidence 344667799999999999999999999988643 467899999999999999999999 999999999998
Q ss_pred HHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEK 97 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~ 97 (125)
.++.--+.+.-.++..
T Consensus 154 Ka~~R~Akc~~eLe~~ 169 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERF 169 (390)
T ss_pred hhhhhhhHHHHHHHHH
Confidence 8887777777666653
No 156
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.89 E-value=9.6e-05 Score=54.71 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH-HHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF-EEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+..+...+.|++.+|+|++|...+.+++..+|.++.+..|+..+...+|+. +.+.+. +.+....+|+++-
T Consensus 201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~-------l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY-------LSQLKQSNPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH-------HHHCHHHTTTSHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH-------HHHHHHhCCCChH
Confidence 455667777777777777777777777777777777777777777777777 444445 5555566777554
No 157
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.88 E-value=8.8e-05 Score=59.53 Aligned_cols=83 Identities=19% Similarity=0.146 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL 88 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~ 88 (125)
..-.|.....+|+-++|......+++.|+....+|+-+|..++.-.+|++|+.+ |+.|+.++|+|..++.-++
T Consensus 44 lAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc-------y~nAl~~~~dN~qilrDls 116 (700)
T KOG1156|consen 44 LAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC-------YRNALKIEKDNLQILRDLS 116 (700)
T ss_pred HHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH-------HHHHHhcCCCcHHHHHHHH
Confidence 334566666788888888888888888888888888888888888888888888 8888888888888888888
Q ss_pred HHHHHHHHHH
Q 033182 89 RLQPLAEEKL 98 (125)
Q Consensus 89 ~~~~~~~~~~ 98 (125)
-++.++++..
T Consensus 117 lLQ~QmRd~~ 126 (700)
T KOG1156|consen 117 LLQIQMRDYE 126 (700)
T ss_pred HHHHHHHhhh
Confidence 8877776553
No 158
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.87 E-value=0.0003 Score=52.73 Aligned_cols=80 Identities=28% Similarity=0.245 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL 88 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~ 88 (125)
-.+.+.-..+.|+.+.|...|+-++.++|+++.++...|.....-.+.-+|-.+ |-+++.++|+|.++..+..
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~-------Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQC-------YVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhh-------hheeeeeCCCchHHHhhhh
Confidence 345555566789999999999999999999999999999999999999999999 9999999999999888777
Q ss_pred HHHHHHH
Q 033182 89 RLQPLAE 95 (125)
Q Consensus 89 ~~~~~~~ 95 (125)
+......
T Consensus 192 RT~plV~ 198 (472)
T KOG3824|consen 192 RTTPLVS 198 (472)
T ss_pred ccchHHH
Confidence 6554444
No 159
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.87 E-value=0.00034 Score=46.24 Aligned_cols=82 Identities=18% Similarity=0.229 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhc---CHHHHHHHHHHHHh-cCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 7 ICHSNRGICFLKLG---KFEESIKECTKALE-LNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 7 ~~~~~~~~~~~~~~---~~~~A~~~~~~al~-l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
...+|.+++..+.. +..+.+..++..++ -+| ...+..|.++..+.++++|+.++.+ ....++.+|+|.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~y-------vd~ll~~e~~n~ 105 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRY-------VDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHH-------HHHHHhhCCCcH
Confidence 35678888888754 46889999999997 455 3567899999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAE 95 (125)
Q Consensus 82 ~~~~~l~~~~~~~~ 95 (125)
++...-..+.+++.
T Consensus 106 Qa~~Lk~~ied~it 119 (149)
T KOG3364|consen 106 QALELKETIEDKIT 119 (149)
T ss_pred HHHHHHHHHHHHHh
Confidence 98877777666554
No 160
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.86 E-value=0.00012 Score=61.36 Aligned_cols=83 Identities=16% Similarity=0.061 Sum_probs=61.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-------------------HHHHHHHHHHHHchhHHHHHHhH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM-------------------KALIRRAEAHEKLEHFEEAIAGI 63 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-------------------~~~~~~~~~~~~~~~~~~A~~~~ 63 (125)
|....+|+-.|..+.+.+++..+... +++..-+.+. .+++.+|.||-++|++++|...
T Consensus 62 P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~- 138 (906)
T PRK14720 62 KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGV- 138 (906)
T ss_pred CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHH-
Confidence 44455566666666666555554443 4444444444 7889999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182 64 QDLMIVMKKILEFDPSNNQAKRTILRLQPLA 94 (125)
Q Consensus 64 ~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 94 (125)
|+++++++|+|+.+...++..+...
T Consensus 139 ------yer~L~~D~~n~~aLNn~AY~~ae~ 163 (906)
T PRK14720 139 ------WERLVKADRDNPEIVKKLATSYEEE 163 (906)
T ss_pred ------HHHHHhcCcccHHHHHHHHHHHHHh
Confidence 9999999999999999888877665
No 161
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.85 E-value=2.8e-05 Score=45.87 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 37 PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
|+-+.++.++|.++..+|+|++|+..+++++.+.+..-..+|....+...++.++...++..++..
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 67 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALE 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 556789999999999999999999996666666322222223345678888888888888776655
No 162
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.85 E-value=0.00011 Score=48.65 Aligned_cols=64 Identities=17% Similarity=0.210 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
+....+..+++.+++..|+|++|+..++. +.-.+-.+..+..+|.++...|++++|+.. |++++
T Consensus 82 ~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~-------y~~Al 145 (145)
T PF09976_consen 82 ELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAA-------YQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHH-------HHHhC
Confidence 34567899999999999999999999966 344455677889999999999999999999 76653
No 163
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.84 E-value=2.5e-05 Score=58.70 Aligned_cols=87 Identities=15% Similarity=0.163 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELN--P-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
..+..|+|+|.|.+-.++++-++..|.+++... | ..+..|||+|.+....|++-.|.++ |+-++.-||++
T Consensus 356 ~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rc-------frlaL~~d~~h 428 (478)
T KOG1129|consen 356 QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRC-------FRLALTSDAQH 428 (478)
T ss_pred CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHH-------HHHHhccCcch
Confidence 457789999999999999999999999998774 3 3578999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEK 97 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~ 97 (125)
.+++.+|+.+..+-++-
T Consensus 429 ~ealnNLavL~~r~G~i 445 (478)
T KOG1129|consen 429 GEALNNLAVLAARSGDI 445 (478)
T ss_pred HHHHHhHHHHHhhcCch
Confidence 99999999887655543
No 164
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00024 Score=52.17 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc---H
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN---N 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~---~ 81 (125)
...+..|.+..|.-.++|.+|.+.+++++..||.++.+-.+.|.|++-+|+..+|++. ++.+++..|+. .
T Consensus 251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~-------~e~~~~~~P~~~l~e 323 (366)
T KOG2796|consen 251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQ-------LEAMVQQDPRHYLHE 323 (366)
T ss_pred hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHH-------HHHHhccCCccchhh
Confidence 4466778889999999999999999999999999999999999999999999999999 99999999974 3
Q ss_pred HHHHHHHHHHH
Q 033182 82 QAKRTILRLQP 92 (125)
Q Consensus 82 ~~~~~l~~~~~ 92 (125)
....+|.++++
T Consensus 324 s~~~nL~tmyE 334 (366)
T KOG2796|consen 324 SVLFNLTTMYE 334 (366)
T ss_pred hHHHHHHHHHH
Confidence 44555666554
No 165
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.79 E-value=0.00027 Score=51.32 Aligned_cols=89 Identities=19% Similarity=0.241 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CC----------CChHHHHHHHHHHHHchhHHHHHHhHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALEL--------NP----------TYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------~p----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 67 (125)
..+.-..|+-+++.|+|.+|...|..|+.. .| .+...+.|.++|+...|+|-++++.
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh----- 252 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH----- 252 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH-----
Confidence 345678899999999999999999988633 23 3446889999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182 68 IVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 68 ~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 101 (125)
...++..+|+|..+++-.++.........++.
T Consensus 253 --~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~ 284 (329)
T KOG0545|consen 253 --CSEILRHHPGNVKAYFRRAKAHAAVWNEAEAK 284 (329)
T ss_pred --HHHHHhcCCchHHHHHHHHHHHHhhcCHHHHH
Confidence 99999999999999999998887776555443
No 166
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.00036 Score=50.84 Aligned_cols=79 Identities=16% Similarity=0.217 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
.-+.++|=+|.+++.+|+|+.|...|..+++-.|+. +++++-+|.+...+|+.++|... |+.+++.=|+.
T Consensus 176 ~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~at-------l~qv~k~YP~t 248 (262)
T COG1729 176 YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACAT-------LQQVIKRYPGT 248 (262)
T ss_pred ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHHCCCC
Confidence 346788899999999999999999999999987754 67899999999999999999999 99999999998
Q ss_pred HHHHHHHHH
Q 033182 81 NQAKRTILR 89 (125)
Q Consensus 81 ~~~~~~l~~ 89 (125)
..+...-..
T Consensus 249 ~aA~~Ak~~ 257 (262)
T COG1729 249 DAAKLAKVA 257 (262)
T ss_pred HHHHHHHHH
Confidence 887655443
No 167
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.78 E-value=0.00032 Score=56.46 Aligned_cols=93 Identities=17% Similarity=0.212 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+....||--.|..+....+|.+|+++|..|+.++|+|...+.-++....++++|+-.... ..+.+++.|+...
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~t-------r~~LLql~~~~ra 144 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLET-------RNQLLQLRPSQRA 144 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHH-------HHHHHHhhhhhHH
Confidence 445678999999999999999999999999999999999999999999999999999998 8999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
.|...+..+-..++...+..
T Consensus 145 ~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 145 SWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88777776666665554443
No 168
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.78 E-value=0.00011 Score=56.59 Aligned_cols=60 Identities=25% Similarity=0.287 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
|..+..+.--+..+++.++++.|+..+.+++.+.|...++|+.++.+|..+|+|+.|+..
T Consensus 231 p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALla 290 (395)
T PF09295_consen 231 PQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLA 290 (395)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence 445677778888999999999999999999999999999999999999999999999987
No 169
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.78 E-value=2.8e-05 Score=60.41 Aligned_cols=87 Identities=26% Similarity=0.224 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL 88 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~ 88 (125)
.-+-+.-+++-+.|+.|+..|.++|.++|+++..+-+++.++.+.++|..|+.+ +.++++++|.....+...+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~D-------a~kaie~dP~~~K~Y~rrg 79 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHD-------ALKAIELDPTYIKAYVRRG 79 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHH-------HHhhhhcCchhhheeeecc
Confidence 445667778889999999999999999999999999999999999999999999 9999999999877777666
Q ss_pred HHHHHHHHHHHHHH
Q 033182 89 RLQPLAEEKLEKMK 102 (125)
Q Consensus 89 ~~~~~~~~~~~~~~ 102 (125)
....++.+..++..
T Consensus 80 ~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 80 TAVMALGEFKKALL 93 (476)
T ss_pred HHHHhHHHHHHHHH
Confidence 66666666655443
No 170
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.77 E-value=0.00022 Score=54.77 Aligned_cols=77 Identities=12% Similarity=-0.005 Sum_probs=65.1
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 18 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 18 ~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
..+++..++...++.++.+|+++..++.+|..+...++|++|... |+++++.+|++.. ...+..++...++.
T Consensus 306 ~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~-------le~al~~~P~~~~-~~~La~~~~~~g~~ 377 (398)
T PRK10747 306 KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLA-------FRAALKQRPDAYD-YAWLADALDRLHKP 377 (398)
T ss_pred cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCHHH-HHHHHHHHHHcCCH
Confidence 347888888888888899999999999999999999999999999 9999999999755 45688888877766
Q ss_pred HHHHH
Q 033182 98 LEKMK 102 (125)
Q Consensus 98 ~~~~~ 102 (125)
.++..
T Consensus 378 ~~A~~ 382 (398)
T PRK10747 378 EEAAA 382 (398)
T ss_pred HHHHH
Confidence 65543
No 171
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.75 E-value=0.00036 Score=50.58 Aligned_cols=71 Identities=24% Similarity=0.257 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+..|++-|...++.|+|.+|++.|+.+....|.. .++...++-++++.++|+.|+.. ..+.+++.|+++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~-------~drFi~lyP~~~n 106 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAY-------IDRFIRLYPTHPN 106 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHH-------HHHHHHhCCCCCC
Confidence 4679999999999999999999999999998854 67899999999999999999999 9999999998776
Q ss_pred H
Q 033182 83 A 83 (125)
Q Consensus 83 ~ 83 (125)
+
T Consensus 107 ~ 107 (254)
T COG4105 107 A 107 (254)
T ss_pred h
Confidence 4
No 172
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.73 E-value=0.00024 Score=54.68 Aligned_cols=73 Identities=16% Similarity=-0.066 Sum_probs=38.0
Q ss_pred cCHHHHHHHHHHHHhcCCCCh--HHHHHHHHHHHHchhHHHHHHhHHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 20 GKFEESIKECTKALELNPTYM--KALIRRAEAHEKLEHFEEAIAGIQDLMIVMK--KILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 20 ~~~~~A~~~~~~al~l~p~~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
++...++..++++++.+|+++ .....+|..+...|+|++|.++ |+ .+++.+|++.. ...++.+....+
T Consensus 313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~-------le~a~a~~~~p~~~~-~~~La~ll~~~g 384 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADA-------FKNVAACKEQLDAND-LAMAADAFDQAG 384 (409)
T ss_pred CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHH-------HHHhHHhhcCCCHHH-HHHHHHHHHHcC
Confidence 444444455555555555555 4455556666666666666666 55 35555555444 225555555555
Q ss_pred HHHHH
Q 033182 96 EKLEK 100 (125)
Q Consensus 96 ~~~~~ 100 (125)
+..++
T Consensus 385 ~~~~A 389 (409)
T TIGR00540 385 DKAEA 389 (409)
T ss_pred CHHHH
Confidence 44433
No 173
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.72 E-value=0.00023 Score=53.07 Aligned_cols=88 Identities=14% Similarity=0.155 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-------------------------------------HHHHHHHHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYM-------------------------------------KALIRRAEAH 50 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-------------------------------------~~~~~~~~~~ 50 (125)
....++.++...|++++|...+++++..+|++. .++..+|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 344566666666777777776666666666554 3344567788
Q ss_pred HHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 51 EKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 51 ~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..+|++++|... ++++++++|++..+...++.++...++.++...
T Consensus 125 ~~~G~~~~A~~~-------~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~ 169 (355)
T cd05804 125 EEAGQYDRAEEA-------ARRALELNPDDAWAVHAVAHVLEMQGRFKEGIA 169 (355)
T ss_pred HHcCCHHHHHHH-------HHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999 999999999999999999999887777665554
No 174
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.72 E-value=8.8e-05 Score=34.92 Aligned_cols=33 Identities=39% Similarity=0.633 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTY 39 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 39 (125)
.+|+++|.++..+++++.|+..+++++..+|.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999998863
No 175
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.71 E-value=0.0004 Score=56.34 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
.+|+.-+....-+++.++|++.++.+++.-|++.+.|..+|+++..+++.+.|... |...++.-|.....+..
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a-------Y~~G~k~cP~~ipLWll 724 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA-------YLQGTKKCPNSIPLWLL 724 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH-------HHhccccCCCCchHHHH
Confidence 45666677777789999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHH
Q 033182 87 ILRLQPLAEE 96 (125)
Q Consensus 87 l~~~~~~~~~ 96 (125)
|.++....+.
T Consensus 725 LakleEk~~~ 734 (913)
T KOG0495|consen 725 LAKLEEKDGQ 734 (913)
T ss_pred HHHHHHHhcc
Confidence 9988877653
No 176
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=3e-05 Score=58.29 Aligned_cols=79 Identities=14% Similarity=0.063 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
...+.+|+|+|.+....|++..|.+.|+-++.-||++.+++.|+|..-...|+.+.|... +..+-...|.-.+
T Consensus 392 ~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsl-------l~~A~s~~P~m~E 464 (478)
T KOG1129|consen 392 GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSL-------LNAAKSVMPDMAE 464 (478)
T ss_pred chhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHH-------HHHhhhhCccccc
Confidence 345789999999999999999999999999999999999999999999999999999999 9999999998766
Q ss_pred HHHHHH
Q 033182 83 AKRTIL 88 (125)
Q Consensus 83 ~~~~l~ 88 (125)
...+++
T Consensus 465 ~~~Nl~ 470 (478)
T KOG1129|consen 465 VTTNLQ 470 (478)
T ss_pred ccccee
Confidence 555443
No 177
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.69 E-value=7.7e-05 Score=42.70 Aligned_cols=47 Identities=17% Similarity=0.206 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE 48 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~ 48 (125)
+|.+..+++.++.|+++.|++++|...+++++..+|+++..+..++.
T Consensus 21 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 21 NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 47788999999999999999999999999999999999887766654
No 178
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.66 E-value=0.00025 Score=59.52 Aligned_cols=76 Identities=11% Similarity=0.117 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHH-------------HHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL-------------MIVMKKI 73 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~-------------~~~~~~a 73 (125)
.+++.+|.||-++|++++|...+++++++||+++.+..++|-.|... +.++|..++.+| ..+|++.
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999 999999984333 3456666
Q ss_pred HhhCCCcHHH
Q 033182 74 LEFDPSNNQA 83 (125)
Q Consensus 74 ~~l~p~~~~~ 83 (125)
++.+|++.+.
T Consensus 196 ~~~~~~d~d~ 205 (906)
T PRK14720 196 VHYNSDDFDF 205 (906)
T ss_pred HhcCcccchH
Confidence 6666765554
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.65 E-value=0.00058 Score=54.40 Aligned_cols=93 Identities=9% Similarity=-0.008 Sum_probs=74.5
Q ss_pred hhHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLG--------KFEESIKECTKALEL--NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMK 71 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--------~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 71 (125)
+|..+.+|..++.+|.... +...+.....+++.+ +|..+.+|..+|..+...|++++|... ++
T Consensus 372 dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~-------l~ 444 (517)
T PRK10153 372 EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQA-------IN 444 (517)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHH-------HH
Confidence 4566677777777776642 345666666776664 788899999999999999999999999 99
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 72 KILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 72 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+++.++|+ ..++..++.++...++..++..
T Consensus 445 rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~ 474 (517)
T PRK10153 445 KAIDLEMS-WLNYVLLGKVYELKGDNRLAAD 474 (517)
T ss_pred HHHHcCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 99999995 7899999999988887766654
No 180
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.64 E-value=0.00082 Score=53.55 Aligned_cols=80 Identities=21% Similarity=0.188 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.+.+..-...++.+.|++++|+.++++.-..-++.....-.+|.++.++|++++|... |+..+..||+|..-+
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~-------y~~Li~rNPdn~~Yy 75 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKI-------YRELIDRNPDNYDYY 75 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCcHHHH
Confidence 3566677778888999999999999998888889999999999999999999999999 999999999999988
Q ss_pred HHHHHHH
Q 033182 85 RTILRLQ 91 (125)
Q Consensus 85 ~~l~~~~ 91 (125)
..+..+.
T Consensus 76 ~~L~~~~ 82 (517)
T PF12569_consen 76 RGLEEAL 82 (517)
T ss_pred HHHHHHH
Confidence 8888776
No 181
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.64 E-value=1.8e-05 Score=59.37 Aligned_cols=72 Identities=29% Similarity=0.381 Sum_probs=66.8
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
++|....+|.+|+.+++++++...|+++|..++.++|+..+.|-.+|.+...+|+|++|..+ +..+.+++-+
T Consensus 143 lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d-------l~~a~kld~d 214 (377)
T KOG1308|consen 143 LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD-------LALACKLDYD 214 (377)
T ss_pred cCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH-------HHHHHhcccc
Confidence 35677889999999999999999999999999999999999999999999999999999999 8888887644
No 182
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0009 Score=51.10 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.-.-+|.|++..|+|++|+..|+.+..-+-.+++.+.+++.|..-+|.|.+|...
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 3344788999999999999999998887777788888888888888888887654
No 183
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.62 E-value=0.00089 Score=50.29 Aligned_cols=92 Identities=12% Similarity=0.061 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
....+.-.+-..|....+|+.|+...++..++++.. +..|+.++..+....+.+.|... ++++++-+|
T Consensus 139 fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~-------l~kAlqa~~ 211 (389)
T COG2956 139 FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL-------LKKALQADK 211 (389)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH-------HHHHHhhCc
Confidence 445667788889999999999999999999998854 56888888888888888888888 999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++.-+...++++....++...+.+
T Consensus 212 ~cvRAsi~lG~v~~~~g~y~~AV~ 235 (389)
T COG2956 212 KCVRASIILGRVELAKGDYQKAVE 235 (389)
T ss_pred cceehhhhhhHHHHhccchHHHHH
Confidence 999999999999877776655544
No 184
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.60 E-value=0.0026 Score=44.56 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=63.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchh-----------HHHHHHhHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEH-----------FEEAIAGIQDLMI 68 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~-----------~~~A~~~~~~~~~ 68 (125)
+.-..+.+.+|.++.+.|+|..|+..+++.+...|+. +.+++.+|.++..+.. ..+|...
T Consensus 39 ~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~------ 112 (203)
T PF13525_consen 39 PYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEE------ 112 (203)
T ss_dssp TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHH------
Confidence 4456788999999999999999999999999999875 5689999999776543 3467777
Q ss_pred HHHHHHhhCCCcHH---HHHHHHHHHHHHH
Q 033182 69 VMKKILEFDPSNNQ---AKRTILRLQPLAE 95 (125)
Q Consensus 69 ~~~~a~~l~p~~~~---~~~~l~~~~~~~~ 95 (125)
|+..++.-|+.+- +...+..+...+.
T Consensus 113 -~~~li~~yP~S~y~~~A~~~l~~l~~~la 141 (203)
T PF13525_consen 113 -FEELIKRYPNSEYAEEAKKRLAELRNRLA 141 (203)
T ss_dssp -HHHHHHH-TTSTTHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHCcCchHHHHHHHHHHHHHHHHH
Confidence 9999999998654 4444445544443
No 185
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.58 E-value=0.00049 Score=50.99 Aligned_cols=71 Identities=20% Similarity=0.194 Sum_probs=60.3
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
+++.+|...|+......|..+..+..++.|++.+|+|++|... ++.+++.+|+++++..++..+....++.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~-------L~~al~~~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEEL-------LEEALEKDPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHH-------HHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence 3589999999998777778899999999999999999999999 9999999999999999999988777766
No 186
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.58 E-value=0.0014 Score=55.19 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=59.8
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.+|.+..+|..+|.+|-..|+|..|++.|+++..++|..--+.|..+...+..|+|++|++.
T Consensus 591 ~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 591 TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999998
No 187
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.58 E-value=0.00014 Score=36.99 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
+|.++|.+|.++|+|++|+..|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778899999999999999999986544
No 188
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=0.00012 Score=55.15 Aligned_cols=93 Identities=23% Similarity=0.223 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+.+..++.|.+.+-++.+.+..|+.....+++.++...+++++++..+..+.++++|.++ ++.+.+..|.+..
T Consensus 272 ~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~-------~~~a~~~~p~d~~ 344 (372)
T KOG0546|consen 272 ELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALED-------LKKAKQKAPNDKA 344 (372)
T ss_pred ccccccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHH-------HHHhhccCcchHH
Confidence 455667788999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
+...+.......++.....+
T Consensus 345 i~~~~~~~~~~~~~~~~~~~ 364 (372)
T KOG0546|consen 345 IEEELENVRQKKKQYNRKQK 364 (372)
T ss_pred HHHHHHHhhhHHHHHHHHHH
Confidence 99988888777776654443
No 189
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.56 E-value=0.00074 Score=37.51 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 49 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 49 (125)
.+++.+|..+.++|+|..|.+..+.+++.+|+|..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4788999999999999999999999999999998876554443
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.55 E-value=0.0042 Score=44.84 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHch------------------hHHHHHHh
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLE------------------HFEEAIAG 62 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~------------------~~~~A~~~ 62 (125)
....+.+.+|.+|++.++|++|+..+++.++.+|++ +.+++.+|.++..++ .-..|+..
T Consensus 67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~ 146 (243)
T PRK10866 67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRD 146 (243)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHH
Confidence 344567899999999999999999999999999876 568999998875554 23466677
Q ss_pred HHHHHHHHHHHHhhCCCcHH---HHHHHHHHHHHHH
Q 033182 63 IQDLMIVMKKILEFDPSNNQ---AKRTILRLQPLAE 95 (125)
Q Consensus 63 ~~~~~~~~~~a~~l~p~~~~---~~~~l~~~~~~~~ 95 (125)
|++.++.-|+..- +...+..+...+.
T Consensus 147 -------~~~li~~yP~S~ya~~A~~rl~~l~~~la 175 (243)
T PRK10866 147 -------FSKLVRGYPNSQYTTDATKRLVFLKDRLA 175 (243)
T ss_pred -------HHHHHHHCcCChhHHHHHHHHHHHHHHHH
Confidence 9999999998654 4444444444443
No 191
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.53 E-value=0.00025 Score=33.24 Aligned_cols=33 Identities=39% Similarity=0.538 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
.+++++|.++..+++++.|... ++++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~-------~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEY-------YEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHH-------HHHHHccCCCC
Confidence 5789999999999999999999 99999988863
No 192
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.52 E-value=0.0003 Score=34.32 Aligned_cols=33 Identities=30% Similarity=0.438 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
.+++++|.++...|++++|+.. |+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~-------~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEY-------FQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHH-------HHHHHHHCcCC
Confidence 4789999999999999999999 99999999874
No 193
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.50 E-value=0.0011 Score=40.72 Aligned_cols=65 Identities=23% Similarity=0.293 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHH
Q 033182 25 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--NQAKRTILRLQPLAEE 96 (125)
Q Consensus 25 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~ 96 (125)
.+..+++.+..+|++..+.+.+|..+...|++++|++. +..+++.+|++ ..+...+-.+...++.
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~-------Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQ-------LLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHH-------HHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 45678899999999999999999999999999999999 99999999876 6677777777777764
No 194
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.47 E-value=0.00021 Score=51.30 Aligned_cols=59 Identities=31% Similarity=0.497 Sum_probs=55.0
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 16 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 16 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
..+.++.+.|.+.|.+++.+-|.+..+|+++|....+.|+++.|.+. |++.++++|.+.
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a-------~~~~L~ldp~D~ 63 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAA-------YEEVLELDPEDH 63 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHH-------HHHHHcCCcccc
Confidence 44678999999999999999999999999999999999999999999 999999999753
No 195
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0073 Score=46.98 Aligned_cols=38 Identities=26% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 25 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 25 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
|-+.++++++++|.+..+...+++.+..-|.+++++..
T Consensus 423 AKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 423 AKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred HHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHH
Confidence 34444555555565555555555555544444444443
No 196
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.41 E-value=0.00034 Score=35.50 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
++.++|.+|..+|+|++|+.. |++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~-------y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEY-------YEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHH-------HHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHH-------HHHHHHh
Confidence 578999999999999999999 8775543
No 197
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.41 E-value=0.00046 Score=33.65 Aligned_cols=32 Identities=22% Similarity=0.476 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTY 39 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 39 (125)
+++++|.++.+.|++++|+..+++++...|+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 68999999999999999999999999998863
No 198
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.37 E-value=0.00074 Score=53.69 Aligned_cols=82 Identities=26% Similarity=0.302 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 3 ELRSICHSNRGICFLKL---GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~---~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
|....++.|++.++++. |+--.|++++..++++||...++|+.++.++..++++.+|+++ ...+....|.
T Consensus 405 ~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~-------~~alq~~~Pt 477 (758)
T KOG1310|consen 405 PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC-------HWALQMSFPT 477 (758)
T ss_pred cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh-------HHHHhhcCch
Confidence 45677899999999985 5667899999999999999999999999999999999999998 7777777886
Q ss_pred cHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQ 91 (125)
Q Consensus 80 ~~~~~~~l~~~~ 91 (125)
+.........+.
T Consensus 478 d~a~~~~v~~l~ 489 (758)
T KOG1310|consen 478 DVARQNFVLCLP 489 (758)
T ss_pred hhhhhhhhhccc
Confidence 655444443333
No 199
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.24 E-value=7.3e-05 Score=56.16 Aligned_cols=80 Identities=25% Similarity=0.272 Sum_probs=70.7
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 16 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 16 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
....|.+..|+..|..++.++|..+..|-.++.++.++++...|+.+ +..+++++|+...-+.+.+.....++
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD-------~d~A~ein~Dsa~~ykfrg~A~rllg 196 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRD-------CDFAIEINPDSAKGYKFRGYAERLLG 196 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhh-------hhhhhccCcccccccchhhHHHHHhh
Confidence 34468899999999999999999999999999999999999999999 99999999998887888887777777
Q ss_pred HHHHHHH
Q 033182 96 EKLEKMK 102 (125)
Q Consensus 96 ~~~~~~~ 102 (125)
.+.++.+
T Consensus 197 ~~e~aa~ 203 (377)
T KOG1308|consen 197 NWEEAAH 203 (377)
T ss_pred chHHHHH
Confidence 6655544
No 200
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.05 E-value=0.0034 Score=48.84 Aligned_cols=96 Identities=21% Similarity=0.200 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----C--CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELN----P--TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~----p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
-.++.|+|+||+-.|+|+.|+++|...+.+. . .-+...|.+|.+|+-+.++..|+.+.++-+-|-+. +.--.+
T Consensus 235 RRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqe-L~DriG 313 (639)
T KOG1130|consen 235 RRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQE-LEDRIG 313 (639)
T ss_pred HHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Confidence 3578899999999999999999999876543 2 23678899999999999999999994433333211 111134
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
...+.+.|+.....+.+...+..
T Consensus 314 e~RacwSLgna~~alg~h~kAl~ 336 (639)
T KOG1130|consen 314 ELRACWSLGNAFNALGEHRKALY 336 (639)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHH
Confidence 45567777777777776665554
No 201
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.96 E-value=0.00081 Score=33.76 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=27.4
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 033182 70 MKKILEFDPSNNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 70 ~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 100 (125)
|+++++++|++..++..++.++...++..++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 7899999999999999999999888776554
No 202
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.013 Score=43.00 Aligned_cols=77 Identities=18% Similarity=0.207 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
+....|+=..+++.++++.|....++.+.++|.++.-+.-+|.+|..+|.+.-|+.+ ++..++.-|+.+.+..
T Consensus 181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~d-------l~~~~~~~P~~~~a~~ 253 (269)
T COG2912 181 SRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALED-------LSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHH-------HHHHHHhCCCchHHHH
Confidence 445567777888999999999999999999999999999999999999999999999 9999999999877654
Q ss_pred HHHH
Q 033182 86 TILR 89 (125)
Q Consensus 86 ~l~~ 89 (125)
....
T Consensus 254 ir~~ 257 (269)
T COG2912 254 IRAQ 257 (269)
T ss_pred HHHH
Confidence 4433
No 203
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.80 E-value=0.047 Score=43.34 Aligned_cols=80 Identities=18% Similarity=0.109 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-HHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-FEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
+..+|.+......+.+.+.+.-..|.+++..+|+++..|.-.|.-.+.-+. .+.|.+. |.++++++|+++..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRal-------flrgLR~npdsp~L 176 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARAL-------FLRGLRFNPDSPKL 176 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHH-------HHHHhhcCCCChHH
Confidence 456777777666666779999999999999999999999999998887776 7888888 99999999999987
Q ss_pred HHHHHHHH
Q 033182 84 KRTILRLQ 91 (125)
Q Consensus 84 ~~~l~~~~ 91 (125)
+..--++.
T Consensus 177 w~eyfrmE 184 (568)
T KOG2396|consen 177 WKEYFRME 184 (568)
T ss_pred HHHHHHHH
Confidence 76544443
No 204
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.73 E-value=0.003 Score=49.96 Aligned_cols=86 Identities=21% Similarity=0.124 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------cCC---------CChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALE---------LNP---------TYMKALIRRAEAHEKLEHFEEAIAGIQDL 66 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---------l~p---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 66 (125)
...+|+|+|.++++++.|.-+...|.++++ +.| ...+..||+|..+.+.|+...|.++
T Consensus 282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC---- 357 (696)
T KOG2471|consen 282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC---- 357 (696)
T ss_pred hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH----
Confidence 456789999999999999999999999986 112 2467899999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 67 MIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
|..+.+.-..++-.|.-+.++..+..+.
T Consensus 358 ---f~~av~vfh~nPrlWLRlAEcCima~~~ 385 (696)
T KOG2471|consen 358 ---FQKAVHVFHRNPRLWLRLAECCIMALQK 385 (696)
T ss_pred ---HHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 8888887788888999888887665543
No 205
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.73 E-value=0.021 Score=42.21 Aligned_cols=93 Identities=20% Similarity=0.183 Sum_probs=70.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----hcC--CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKAL----ELN--PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al----~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
|.++.....+|...++.|+.+.|...|+.+- +++ ..+.-.+.+.+.++...++|.+|... +.+++..
T Consensus 209 e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~-------~~~i~~~ 281 (366)
T KOG2796|consen 209 EQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRF-------FTEILRM 281 (366)
T ss_pred cccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHH-------Hhhcccc
Confidence 5567778888999999999999999998543 333 35567888899999999999999999 9999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 77 DPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 77 ~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
||.++.+....+-|.--+++-..+.+
T Consensus 282 D~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 282 DPRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred CCCchhhhchHHHHHHHHHHHHHHHH
Confidence 99988766665555555554444443
No 206
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.70 E-value=0.0047 Score=31.47 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKI 73 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a 73 (125)
++.++|.+|..+|++++|...++.++.+.++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 34445555555555555555555555544443
No 207
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.67 E-value=0.0071 Score=44.39 Aligned_cols=96 Identities=20% Similarity=0.121 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----C-CChHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELN-----P-TYMKALIRRAEAHEKL-EHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-----p-~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
-..+|.+.+.++.+. ++.+|+..+++++.+- | .-++++.++|.+|... |++++|+..|+.|+.+|+.--. .
T Consensus 74 Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~-~ 151 (282)
T PF14938_consen 74 AAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS-P 151 (282)
T ss_dssp HHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC-h
Confidence 345677888887665 9999999999998762 2 2367899999999999 9999999997777766642110 0
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 78 PSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 78 p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..-......++.+...+++..++..
T Consensus 152 ~~a~~~~~~~A~l~~~l~~y~~A~~ 176 (282)
T PF14938_consen 152 HSAAECLLKAADLYARLGRYEEAIE 176 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCHHHHHH
Confidence 0123355566666666666655544
No 208
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.66 E-value=0.0069 Score=30.82 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
..++.++|.+|..+|++++|+..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 467899999999999999999999999865
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.65 E-value=0.091 Score=34.37 Aligned_cols=88 Identities=27% Similarity=0.369 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--------C--------------ChHHHHHHHHHHHHchhHHHHHHhHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNP--------T--------------YMKALIRRAEAHEKLEHFEEAIAGIQD 65 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p--------~--------------~~~~~~~~~~~~~~~~~~~~A~~~~~~ 65 (125)
.+...|......++.+.++..+++++.+-. . ...+...++..+...|+++.|+..
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~--- 84 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRL--- 84 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH---
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH---
Confidence 344446556677899999999999987731 1 134666688888899999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 66 LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 66 ~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+++++..+|-+..++..+-.++...++...+..
T Consensus 85 ----~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~ 117 (146)
T PF03704_consen 85 ----LQRALALDPYDEEAYRLLMRALAAQGRRAEALR 117 (146)
T ss_dssp ----HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred ----HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence 999999999999999999999998888776655
No 210
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.64 E-value=0.0054 Score=47.77 Aligned_cols=65 Identities=23% Similarity=0.287 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIV 69 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 69 (125)
...+|-|+|+.|+-.|+|..|+..-+.-+.+...+ .+++.|+|.||.-+|+++.|+++|...+.+
T Consensus 194 qGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 194 QGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred hcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 35678899999999999999999877766665433 579999999999999999999995555554
No 211
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.64 E-value=0.017 Score=44.28 Aligned_cols=76 Identities=20% Similarity=0.120 Sum_probs=62.7
Q ss_pred hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 033182 19 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKL 98 (125)
Q Consensus 19 ~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 98 (125)
.++++.-++..++.++..|+++..++.+|..+.+.+.|.+|... |+.++...|+. ..+..+++...++++..
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~-------leaAl~~~~s~-~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA-------LEAALKLRPSA-SDYAELADALDQLGEPE 378 (400)
T ss_pred CCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH-------HHHHHhcCCCh-hhHHHHHHHHHHcCChH
Confidence 45666666777777788899999999999999999999999999 99999988874 45778888888888766
Q ss_pred HHHH
Q 033182 99 EKMK 102 (125)
Q Consensus 99 ~~~~ 102 (125)
.+..
T Consensus 379 ~A~~ 382 (400)
T COG3071 379 EAEQ 382 (400)
T ss_pred HHHH
Confidence 5544
No 212
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.61 E-value=0.023 Score=41.65 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------Ch-HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT------YM-KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
...++.+.|.++.+.|+|++|+..|+++....-+ .. ..++..+.|++..|++..|... +++....+
T Consensus 154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~-------~~~~~~~~ 226 (282)
T PF14938_consen 154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKA-------LERYCSQD 226 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHH-------HHHHGTTS
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhC
Confidence 4567889999999999999999999998865311 23 3557888999999999999999 99999999
Q ss_pred CCcHHH--HHHHHHHHHHHHHH
Q 033182 78 PSNNQA--KRTILRLQPLAEEK 97 (125)
Q Consensus 78 p~~~~~--~~~l~~~~~~~~~~ 97 (125)
|+...+ ...+..+....++.
T Consensus 227 ~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 227 PSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp TTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCCCCcHHHHHHHHHHHHHHhC
Confidence 965443 33455555555443
No 213
>PLN03077 Protein ECB2; Provisional
Probab=96.58 E-value=0.028 Score=47.19 Aligned_cols=87 Identities=17% Similarity=0.053 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
..|..+..++.+.|++++|...+++. ...|+ +..|..+-.++...++.+.|... .+++++++|++...+..
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~-------a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELA-------AQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHH-------HHHHHhhCCCCcchHHH
Confidence 45666667777777777777666653 23443 45555555566666777776666 88889999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 033182 87 ILRLQPLAEEKLEKMK 102 (125)
Q Consensus 87 l~~~~~~~~~~~~~~~ 102 (125)
+..++...+++.+..+
T Consensus 697 l~n~ya~~g~~~~a~~ 712 (857)
T PLN03077 697 LCNLYADAGKWDEVAR 712 (857)
T ss_pred HHHHHHHCCChHHHHH
Confidence 9999988888776665
No 214
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.024 Score=41.64 Aligned_cols=70 Identities=17% Similarity=0.252 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHH-hHHHHHHHHHHHHhhCCCcHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA-GIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
......+.|++.+++|++|....+.++.-+++++..+.|+-.+-..+|.-.++.. . +.+....+|.++-+
T Consensus 208 ~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~-------l~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 208 LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN-------LSQLKLSHPEHPFV 278 (299)
T ss_pred HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH-------HHHHHhcCCcchHH
Confidence 3456778888888888888888888888888888888888888888888877665 4 45555667775543
No 215
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.55 E-value=0.086 Score=34.45 Aligned_cols=68 Identities=35% Similarity=0.369 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHH-HHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAE-AHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
.....+...+..+...+++..++..+..++..++.........+. ++...|+++.|... +.+++..+|
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~~~~~~~~~ 161 (291)
T COG0457 93 NLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALEL-------YEKALELDP 161 (291)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCC
Confidence 345566677777777777777777777777776666555555555 67777777777777 666666555
No 216
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.47 E-value=0.03 Score=45.93 Aligned_cols=64 Identities=8% Similarity=-0.065 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
...|..+..++...|+++.|...+++.+.++|++...|..+..+|.+.|++++|.+. ++...+.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v-------~~~m~~~ 557 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV-------VETLKRK 557 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH-------HHHHHHc
Confidence 456888888888999999999999999999999999999999999999999999999 7766544
No 217
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.05 Score=40.07 Aligned_cols=71 Identities=18% Similarity=0.196 Sum_probs=61.1
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
+++..|.-.|+..-.--|..+......+.|++.+|+|++|... ++.++.-+|+++++..++-.+....+..
T Consensus 187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~l-------L~eaL~kd~~dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESL-------LEEALDKDAKDPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHH-------HHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence 4577788888887775555688889999999999999999999 9999999999999999999888777755
No 218
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=96.35 E-value=0.024 Score=46.55 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
..|..+..++.+.|++++|.+.+++. ...| +...|..+..++...|+++.|... +++.++++|++...+..
T Consensus 463 ~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~-------~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 463 MHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLA-------AEKLYGMGPEKLNNYVV 533 (697)
T ss_pred cchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHH-------HHHHhCCCCCCCcchHH
Confidence 35667777888888888888877653 2233 456788888888889999999888 99999999999888999
Q ss_pred HHHHHHHHHHHHHHHH
Q 033182 87 ILRLQPLAEEKLEKMK 102 (125)
Q Consensus 87 l~~~~~~~~~~~~~~~ 102 (125)
+..++...++..++.+
T Consensus 534 L~~~y~~~G~~~~A~~ 549 (697)
T PLN03081 534 LLNLYNSSGRQAEAAK 549 (697)
T ss_pred HHHHHHhCCCHHHHHH
Confidence 9999888887776665
No 219
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.35 E-value=0.093 Score=44.12 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
.+..--|..+.++|+.++|...++..-...+++...+-.+-.||..++++++|... |+++++.+|+ .+....
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~-------Ye~~~~~~P~-eell~~ 115 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL-------YERANQKYPS-EELLYH 115 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH-------HHHHHhhCCc-HHHHHH
Confidence 34445567777888888888777777777788888888888888888888888888 8888888888 555555
Q ss_pred HHHHHHHHHHHHH
Q 033182 87 ILRLQPLAEEKLE 99 (125)
Q Consensus 87 l~~~~~~~~~~~~ 99 (125)
+=.++-+.+....
T Consensus 116 lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 116 LFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHHHHHHHH
Confidence 5455555544433
No 220
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.31 E-value=0.089 Score=37.38 Aligned_cols=69 Identities=14% Similarity=0.140 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhcCHH-------HHHHHHHHHHhcCC------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFE-------ESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~-------~A~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 70 (125)
..+.++..+|++|...|+.+ .|...|++++.... +.....|.+|...++.|++++|..+ |
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~-------f 188 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRW-------F 188 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHH-------H
Confidence 45678899999999998844 46666666665542 2367889999999999999999999 9
Q ss_pred HHHHhhCCC
Q 033182 71 KKILEFDPS 79 (125)
Q Consensus 71 ~~a~~l~p~ 79 (125)
.+++..-..
T Consensus 189 s~vi~~~~~ 197 (214)
T PF09986_consen 189 SRVIGSKKA 197 (214)
T ss_pred HHHHcCCCC
Confidence 999985433
No 221
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.17 E-value=0.16 Score=34.56 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
..+.....+-.+.++...+...+...-.+.|..+..-..-|..+...|+|.+|+.. |+.+.+-.|..+.+.-.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rl-------Lr~l~~~~~~~p~~kAL 83 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRL-------LRELEERAPGFPYAKAL 83 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHH-------HHHHhccCCCChHHHHH
Confidence 34555666666677778887777777778888888888888888888888888888 88777777777776666
Q ss_pred HHHHHHHHHH
Q 033182 87 ILRLQPLAEE 96 (125)
Q Consensus 87 l~~~~~~~~~ 96 (125)
+.-|....++
T Consensus 84 lA~CL~~~~D 93 (160)
T PF09613_consen 84 LALCLYALGD 93 (160)
T ss_pred HHHHHHHcCC
Confidence 6666655553
No 222
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.16 E-value=0.14 Score=36.24 Aligned_cols=63 Identities=19% Similarity=0.389 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 10 SNRGICFLKLGKFEESIKECTKALE-LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~-l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+.+|....+.|++.+|...|.+++. +-.+++...+.++.++...+++..|... ++...+-+|.
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~t-------Le~l~e~~pa 156 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQT-------LEDLMEYNPA 156 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHH-------HHHHhhcCCc
Confidence 4455555566666666666665542 2344555555555555555555555555 5555555553
No 223
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.34 Score=39.31 Aligned_cols=96 Identities=15% Similarity=0.195 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------------------------------CC-ChHHHHHHHHHHHHch
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELN------------------------------PT-YMKALIRRAEAHEKLE 54 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~------------------------------p~-~~~~~~~~~~~~~~~~ 54 (125)
.....-+|..+.++|+|++|+..|...++-+ |+ ....+||.+.++...|
T Consensus 110 ~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g 189 (652)
T KOG2376|consen 110 DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENG 189 (652)
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcc
Confidence 3456667888889999999999888875433 22 3568899999999999
Q ss_pred hHHHHHHhHHHHHHHHHHHHhhCCCc-HH-------HHHHHHHHHHHHHHHHHHH
Q 033182 55 HFEEAIAGIQDLMIVMKKILEFDPSN-NQ-------AKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 55 ~~~~A~~~~~~~~~~~~~a~~l~p~~-~~-------~~~~l~~~~~~~~~~~~~~ 101 (125)
+|.+|++.+++++.+.++-+..+-.+ .+ +...+.-++..+++..++.
T Consensus 190 ky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 190 KYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred cHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 99999999899988888888766544 22 4555555666666554443
No 224
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=96.13 E-value=0.066 Score=39.61 Aligned_cols=77 Identities=22% Similarity=0.241 Sum_probs=62.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+....++..++..+...++++.++..+++.+.++|-+-..|..+-.+|...|+...|+..|...-.++..-+-++|.
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 44567788889999999999999999999999999999999999999999999999999944444433333334444
No 225
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.03 E-value=0.059 Score=35.20 Aligned_cols=65 Identities=26% Similarity=0.459 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCC----ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALEL-------NPT----YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-------~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 72 (125)
.+.-|+-.++-++..+|+|++++...++++.. +.+ +..+.++++.++..+|+.++|+.. |+.
T Consensus 53 FDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~-------fr~ 125 (144)
T PF12968_consen 53 FDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKE-------FRM 125 (144)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHH-------HHH
Confidence 45678889999999999999999988888854 333 456778899999999999999999 766
Q ss_pred HHh
Q 033182 73 ILE 75 (125)
Q Consensus 73 a~~ 75 (125)
+-+
T Consensus 126 agE 128 (144)
T PF12968_consen 126 AGE 128 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 226
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.069 Score=43.11 Aligned_cols=62 Identities=23% Similarity=0.333 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+++..+.|+++.|+.++|+..+. .+++.+.......|+.++++|+|++|.+. |+...+-+.+
T Consensus 81 ~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdi-------Y~~L~kn~~d 142 (652)
T KOG2376|consen 81 FFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDI-------YQHLAKNNSD 142 (652)
T ss_pred hhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCc
Confidence 34789999999999999999887 77888888999999999999999999999 6666554443
No 227
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=95.93 E-value=0.32 Score=34.40 Aligned_cols=71 Identities=10% Similarity=0.152 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
++.++..++.+.+..+++..|...+++..+.+|. .+...+.+|.++-.+|.+++|... |+.++.--|+...
T Consensus 123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesa-------fe~a~~~ypg~~a 195 (251)
T COG4700 123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESA-------FEVAISYYPGPQA 195 (251)
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHH-------HHHHHHhCCCHHH
Confidence 4567889999999999999999999999999984 578999999999999999999999 9999998888543
No 228
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.91 E-value=0.024 Score=42.79 Aligned_cols=80 Identities=15% Similarity=0.075 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR-RAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
.++++|..-+..-.+.+-|.+--..|.++++.+|.++..|.- .+.-+..-++++.+... |.+++++||.++.
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~-------f~~glR~N~~~p~ 177 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAM-------FLKGLRMNSRSPR 177 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHH-------HHhhhccCCCCch
Confidence 456788888888888888999999999999999999999987 66677788999999999 9999999999998
Q ss_pred HHHHHHHH
Q 033182 83 AKRTILRL 90 (125)
Q Consensus 83 ~~~~l~~~ 90 (125)
+|...-++
T Consensus 178 iw~eyfr~ 185 (435)
T COG5191 178 IWIEYFRM 185 (435)
T ss_pred HHHHHHHH
Confidence 77654443
No 229
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.88 E-value=0.018 Score=29.69 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALE 34 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~ 34 (125)
+|..+|.+.+..++|+.|+.+|.+++.
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555555555555555555443
No 230
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=95.71 E-value=0.21 Score=29.69 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQ 91 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~ 91 (125)
+..+..+|.-+-+.|++.+|+.+|+.+-.++.+++...|+++.-......+.
T Consensus 6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~ 57 (75)
T cd02682 6 ARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMIN 57 (75)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 4556777888889999999999999999999999999999877555444443
No 231
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.71 E-value=0.31 Score=31.70 Aligned_cols=65 Identities=35% Similarity=0.475 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPT-YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
.+..++..+...+++..++..+.+++...+. ....+..++.++...+.++.|... +..++...|.
T Consensus 169 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-------~~~~~~~~~~ 234 (291)
T COG0457 169 ALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEY-------YEKALELDPD 234 (291)
T ss_pred HHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHH-------HHHHHhhCcc
Confidence 3344444455566666666666666666666 566666666666666666666666 6666666665
No 232
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.68 E-value=0.051 Score=42.48 Aligned_cols=57 Identities=25% Similarity=0.558 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
+.+--.+..||.++++...|+....+.|-++|.++.-+++.|.|...+.+|.+|.+.
T Consensus 228 SfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarS 284 (569)
T PF15015_consen 228 SFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARS 284 (569)
T ss_pred HHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 445567899999999999999999999999999999999999999999999999886
No 233
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.68 E-value=0.037 Score=28.50 Aligned_cols=32 Identities=19% Similarity=0.204 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 72 (125)
.+|..+|.+-+..++|++|+.++++++.+.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999995555555443
No 234
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.67 E-value=0.061 Score=41.08 Aligned_cols=59 Identities=19% Similarity=0.132 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
+-+-+.--.+.+..+.|-|.+|++..++++++||.+..+.+.++.++.-.+++.++.+.
T Consensus 173 ~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eF 231 (491)
T KOG2610|consen 173 CYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEF 231 (491)
T ss_pred HHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHH
Confidence 33444555788888999999999999999999999999999999999999999999876
No 235
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.65 E-value=0.022 Score=42.86 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
.+....|.|...++.|+|+.|++-|..+++..--++-.-|+.+.|+...++|+.|++.+ -.|.+|.++.+|.
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~i---SEIieRG~r~HPE 214 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHI---SEIIERGIRQHPE 214 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHH---HHHHHhhhhcCCc
Confidence 34567788999999999999999999999999888889999999999999999999981 1123444555553
No 236
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=95.63 E-value=0.12 Score=42.52 Aligned_cols=91 Identities=13% Similarity=0.006 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
=..+|.-+|..+-++++.+.|-..|...++.=|.....|..++..-.+.|+.-.|... +.++.-.||++...+
T Consensus 684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~i-------ldrarlkNPk~~~lw 756 (913)
T KOG0495|consen 684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSI-------LDRARLKNPKNALLW 756 (913)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHH-------HHHHHhcCCCcchhH
Confidence 3568899999999999999999999999999999999999999999999999999999 999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~ 102 (125)
....++..+.+...++..
T Consensus 757 le~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 757 LESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHcCCHHHHHH
Confidence 777777666665554443
No 237
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=0.25 Score=40.63 Aligned_cols=76 Identities=18% Similarity=0.124 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
.++++|-+.-+++..+|..++++|...++.=| ++++...+++.||..+.+.+.|.+. ++.|-+.+|.
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~-------~~EAE~~d~~ 426 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEV-------YQEAEEVDRQ 426 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHH-------HHHHHhhccc
Confidence 45677888889999999999999999987755 3478899999999999999999999 9999999988
Q ss_pred cHHHHHHHH
Q 033182 80 NNQAKRTIL 88 (125)
Q Consensus 80 ~~~~~~~l~ 88 (125)
++-......
T Consensus 427 ~~l~q~~~~ 435 (872)
T KOG4814|consen 427 SPLCQLLML 435 (872)
T ss_pred cHHHHHHHH
Confidence 766544443
No 238
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.57 E-value=0.38 Score=32.72 Aligned_cols=83 Identities=13% Similarity=0.027 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.|..+.+-..-|..++..|+|.+|+..++.+....|..+-+--.++.|+..+++.+.=.-. ..+++- +.++
T Consensus 40 RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr~~A--------~evle~-~~d~ 110 (160)
T PF09613_consen 40 RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWRRYA--------DEVLES-GADP 110 (160)
T ss_pred CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHHHHH--------HHHHhc-CCCh
Confidence 4666777788899999999999999999999999999999999999999999998765433 234443 3356
Q ss_pred HHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPL 93 (125)
Q Consensus 82 ~~~~~l~~~~~~ 93 (125)
.+......+...
T Consensus 111 ~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 111 DARALVRALLAR 122 (160)
T ss_pred HHHHHHHHHHHh
Confidence 655555555433
No 239
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.57 E-value=0.12 Score=40.94 Aligned_cols=75 Identities=17% Similarity=0.082 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC----ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT----YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
|..+-..+..|..+...|+.++|+..+++++..... ..-+++.+|-++.-+.+|++|... +.+..+.+.
T Consensus 264 P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~-------f~~L~~~s~ 336 (468)
T PF10300_consen 264 PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEY-------FLRLLKESK 336 (468)
T ss_pred CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHH-------HHHHHhccc
Confidence 445667889999999999999999999998854433 345889999999999999999999 998888655
Q ss_pred CcHHHH
Q 033182 79 SNNQAK 84 (125)
Q Consensus 79 ~~~~~~ 84 (125)
-.+..+
T Consensus 337 WSka~Y 342 (468)
T PF10300_consen 337 WSKAFY 342 (468)
T ss_pred cHHHHH
Confidence 444433
No 240
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.49 E-value=0.15 Score=31.23 Aligned_cols=56 Identities=21% Similarity=0.447 Sum_probs=44.0
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCC---------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 15 CFLKLGKFEESIKECTKALELNP---------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 15 ~~~~~~~~~~A~~~~~~al~l~p---------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
-..+.++|.+|++.+.+.+..-. ....+..++|..+...|++++|+.. +++++++.
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~-------l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQA-------LEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHH
Confidence 34568999999888877765532 1256789999999999999999999 77777764
No 241
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.41 E-value=0.11 Score=42.29 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI 87 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l 87 (125)
...++++..++.|-.-.|...+.+++.++..-+-.++-+|.++..+.+.+.|++. |+.|+.++|+++.....|
T Consensus 644 ~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~-------~~~a~~~~~~~~~~~~~l 716 (886)
T KOG4507|consen 644 PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA-------FRQALKLTTKCPECENSL 716 (886)
T ss_pred cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH-------HHHHHhcCCCChhhHHHH
Confidence 3678899999988888899999999999988899999999999999999999999 999999999999887777
Q ss_pred HHHHH
Q 033182 88 LRLQP 92 (125)
Q Consensus 88 ~~~~~ 92 (125)
..+..
T Consensus 717 ~~i~c 721 (886)
T KOG4507|consen 717 KLIRC 721 (886)
T ss_pred HHHHH
Confidence 66654
No 242
>PLN03077 Protein ECB2; Provisional
Probab=95.39 E-value=0.26 Score=41.48 Aligned_cols=63 Identities=13% Similarity=0.019 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
+.+|..+-.++..-++.+.+....+++++++|+++..|..++.+|...|+|++|.+. .+...+
T Consensus 657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v-------r~~M~~ 719 (857)
T PLN03077 657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV-------RKTMRE 719 (857)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH-------HHHHHH
Confidence 456666666777788999999999999999999999999999999999999999988 665544
No 243
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.39 E-value=0.37 Score=35.41 Aligned_cols=70 Identities=11% Similarity=0.007 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 5 RSICHSNRGICFLKL-GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
...+|...|..-... ++.+.|...|+.+++.-|.+...|......+...++.+.|... |++++..-|...
T Consensus 34 ~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~l-------fer~i~~l~~~~ 104 (280)
T PF05843_consen 34 TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARAL-------FERAISSLPKEK 104 (280)
T ss_dssp -THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHH-------HHHHCCTSSCHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHH-------HHHHHHhcCchh
Confidence 345677777775564 4566699999999998898888888888888899998888888 888888776655
No 244
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.29 E-value=0.14 Score=36.86 Aligned_cols=62 Identities=15% Similarity=0.022 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 033182 25 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPL 93 (125)
Q Consensus 25 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~ 93 (125)
|..+|.+|+.+.|.+...|..+|......|+.-.|+=+ |-|++-...-.+.+..+|..+...
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~-------y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYY-------YIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHH-------HHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHH-------HHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999 777776554457788888888776
No 245
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.28 E-value=0.082 Score=26.83 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHH--HHHHHhcCCCC
Q 033182 7 ICHSNRGICFLKLGKFEESIKE--CTKALELNPTY 39 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~--~~~al~l~p~~ 39 (125)
..++..|..+..+|++++|+.. |.-+..++|.|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 4577888888888888888888 44777777654
No 246
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.20 E-value=0.44 Score=35.03 Aligned_cols=85 Identities=11% Similarity=-0.082 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-chhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK-LEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
-+|........+.+..+.|-..|.+|.+-++.....|...|..-.. .++.+.|... |+++++.-|.+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~I-------fe~glk~f~~~~~~~~ 74 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKI-------FERGLKKFPSDPDFWL 74 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHH-------HHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHH-------HHHHHHHCCCCHHHHH
Confidence 3677778888888889999999999997777788999999999666 5666669999 9999999999988877
Q ss_pred HHHHHHHHHHHHH
Q 033182 86 TILRLQPLAEEKL 98 (125)
Q Consensus 86 ~l~~~~~~~~~~~ 98 (125)
...+....+++..
T Consensus 75 ~Y~~~l~~~~d~~ 87 (280)
T PF05843_consen 75 EYLDFLIKLNDIN 87 (280)
T ss_dssp HHHHHHHHTT-HH
T ss_pred HHHHHHHHhCcHH
Confidence 6666666555443
No 247
>PLN03218 maturation of RBCL 1; Provisional
Probab=95.20 E-value=0.35 Score=42.05 Aligned_cols=55 Identities=7% Similarity=-0.020 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELN-PTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.|..+..+|.+.|++++|...|+.....+ +.+...|..+...|.+.|++++|...
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 44445555555555665655555555554 33445555555555555655555555
No 248
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=95.11 E-value=0.26 Score=36.98 Aligned_cols=74 Identities=20% Similarity=0.151 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
...+...+..|.+.|.+.+|+....+++.+||-+...+..+-..+..+|+--+|...|++---++++-+.++-+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 34555677888899999999999999999999999999999999999999999999966655555555555544
No 249
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.11 E-value=0.19 Score=38.84 Aligned_cols=72 Identities=19% Similarity=0.177 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR 89 (125)
Q Consensus 11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~ 89 (125)
.++..+...-.|.+|+..|.+++.-+|+..-..-.++.||.++.-|+-+... +.-.++..|+.+-+......
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev-------l~vYL~q~pdStiA~NLkac 227 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV-------LKVYLRQFPDSTIAKNLKAC 227 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH-------HHHHHHhCCCcHHHHHHHHH
Confidence 3455566678899999999999999999999999999999999999999888 88888988988776554443
No 250
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.03 E-value=0.29 Score=29.96 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY 39 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 39 (125)
+|.+..+.+.++..++..|++++|+..+-.+++.++++
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 47788899999999999999999999999999999877
No 251
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.87 E-value=0.18 Score=39.92 Aligned_cols=75 Identities=16% Similarity=0.154 Sum_probs=54.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
+....+++.+|++++-+.+|++|...+....+.+. ..+-..|..|.|+..+++.+.+....+.+..+|.++-.+-
T Consensus 302 Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 302 QLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred hHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999998654 3455667788999999999333332222222276665543
No 252
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.80 E-value=0.81 Score=35.50 Aligned_cols=89 Identities=21% Similarity=0.210 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
.-.+|.|++..+.+.-+|..++.+....+.+.... ...+.-+|.++..++.|+.+++. |+.+++....
T Consensus 82 ~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Les-------fe~A~~~A~~ 154 (518)
T KOG1941|consen 82 LLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALES-------FEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHH-------HHHHHHHhhc
Confidence 45678899999999999999999988888875333 46778899999999999999999 7777766443
Q ss_pred cH------HHHHHHHHHHHHHHHHHHH
Q 033182 80 NN------QAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 80 ~~------~~~~~l~~~~~~~~~~~~~ 100 (125)
+. .+...|+++.-.+++...+
T Consensus 155 ~~D~~LElqvcv~Lgslf~~l~D~~Ka 181 (518)
T KOG1941|consen 155 NDDAMLELQVCVSLGSLFAQLKDYEKA 181 (518)
T ss_pred cCCceeeeehhhhHHHHHHHHHhhhHH
Confidence 32 2667788887777766544
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.78 E-value=0.19 Score=40.04 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHchhHHHHHHh
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
+-..+|.|..+.|+..+|++.++..++..|. +...+.++-.++..++.|.++...
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~l 317 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQAL 317 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHH
Confidence 3457899999999999999999999998875 567999999999999999999887
No 254
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.75 E-value=0.76 Score=35.53 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
...+|.--+.+--++|+++.+-.+..++-++.+ +..-....++..+...|+++.|... ...+++..|.++.+
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~-------v~~ll~~~pr~~~v 189 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN-------VDQLLEMTPRHPEV 189 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH-------HHHHHHhCcCChHH
Confidence 345566666777778888888888888888833 3456677888888888888888888 88888888998888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~ 101 (125)
.....+++...+++.+-.
T Consensus 190 lrLa~r~y~~~g~~~~ll 207 (400)
T COG3071 190 LRLALRAYIRLGAWQALL 207 (400)
T ss_pred HHHHHHHHHHhccHHHHH
Confidence 888888888777765443
No 255
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.59 E-value=0.3 Score=41.29 Aligned_cols=78 Identities=13% Similarity=0.153 Sum_probs=68.4
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 18 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 18 ~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
..++|..|...+.+.++..|+..-+.-..|.++.++|+.++|... ++..-..-+++..+...+.-+++.++.-
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~-------Le~~~~~~~~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKL-------LEALYGLKGTDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHH-------HhhhccCCCCchHHHHHHHHHHHHHhhh
Confidence 478999999999999999999999999999999999999999977 7666666677888999999999888877
Q ss_pred HHHHH
Q 033182 98 LEKMK 102 (125)
Q Consensus 98 ~~~~~ 102 (125)
++...
T Consensus 94 d~~~~ 98 (932)
T KOG2053|consen 94 DEAVH 98 (932)
T ss_pred hHHHH
Confidence 66554
No 256
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.58 E-value=0.41 Score=36.25 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.+.-+|.||....+|++|..+|++.-.+.|...+..+..++.+++-+.+.+|+..
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3455666666666666666666666666666666666666666666666666554
No 257
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=94.54 E-value=0.54 Score=27.96 Aligned_cols=42 Identities=19% Similarity=0.314 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
..+...|.-.-..|+|++|+..|+.++.+|..+++..|+...
T Consensus 7 ~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 7 KEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 345566677778899999999999999999999999987554
No 258
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.49 E-value=0.63 Score=37.26 Aligned_cols=85 Identities=11% Similarity=0.053 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
.....|...|.--..++++..|-..+++|+.-|..+...|...+.+-++..+.-.|... +.+|+.+-|.....
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv-------~dRAvt~lPRVdql 143 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNV-------WDRAVTILPRVDQL 143 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHH-------HHHHHHhcchHHHH
Confidence 44556666777667778888888888888888888888888888888888888888888 88888888887776
Q ss_pred HHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAE 95 (125)
Q Consensus 84 ~~~l~~~~~~~~ 95 (125)
+.-..-+...++
T Consensus 144 WyKY~ymEE~Lg 155 (677)
T KOG1915|consen 144 WYKYIYMEEMLG 155 (677)
T ss_pred HHHHHHHHHHhc
Confidence 665555554444
No 259
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.46 E-value=0.75 Score=40.08 Aligned_cols=56 Identities=7% Similarity=-0.121 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHh
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
..|..+...|.+.|++++|+..|+.....+. .+...|..+..++.+.|++++|.+.
T Consensus 508 vTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~l 564 (1060)
T PLN03218 508 HTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564 (1060)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3344444444444444444444444433321 1233444444444444444444444
No 260
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.40 E-value=0.25 Score=41.04 Aligned_cols=84 Identities=32% Similarity=0.562 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 4 LRSICHSNRGICFLKL--GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~--~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
-.++++.|.+.|++++ ++|..++..++-++...|...++++.++.+|..++.++-|++. +.-....+|++.
T Consensus 89 ~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rd-------l~i~~~~~p~~~ 161 (748)
T KOG4151|consen 89 VVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEALNKLDLAVRD-------LRIVEKMDPSNV 161 (748)
T ss_pred hhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHH-------HHHHhcCCCCcc
Confidence 3567788999999885 6899999999999999999999999999999999999999999 777788999987
Q ss_pred HHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLA 94 (125)
Q Consensus 82 ~~~~~l~~~~~~~ 94 (125)
++.....+++..+
T Consensus 162 ~~~eif~elk~ll 174 (748)
T KOG4151|consen 162 SASEIFEELKGLL 174 (748)
T ss_pred hHHHHHHHHHHHH
Confidence 7666444444444
No 261
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.32 E-value=0.2 Score=25.35 Aligned_cols=23 Identities=22% Similarity=0.065 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHchhHHHHHHh
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
++.++.+|-.+..+|++++|+..
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CcHHHHHHHHHHHHhhHHHHHHH
Confidence 35788999999999999999999
No 262
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=94.16 E-value=0.78 Score=33.18 Aligned_cols=61 Identities=13% Similarity=0.127 Sum_probs=55.6
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 15 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 15 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
.+.+.+...+|+...+.-++.+|.+..+.+.+-..++-.|+|++|... ++-+-++.|++..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Q-------l~l~a~l~p~~t~ 70 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQ-------LNLAATLSPQDTV 70 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHH-------HHHHhhcCcccch
Confidence 456778899999999999999999999999999999999999999999 9999999997543
No 263
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=94.02 E-value=0.63 Score=26.71 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.+...|.-.-..|++++|+..|+.|+.+|..+++..|+..
T Consensus 7 ~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~ 46 (69)
T PF04212_consen 7 ELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPE 46 (69)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 4556677777899999999999999999999999987533
No 264
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.99 E-value=0.34 Score=40.67 Aligned_cols=64 Identities=17% Similarity=0.072 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELN------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+.+++.++...|++++|...+++++... +....++..+|.++..+|+.++|... +.+++++...
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~-------L~~Al~la~~ 763 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRV-------LLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHhCc
Confidence 5678999999999999999999998763 23456888999999999999999999 7777776544
No 265
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.73 E-value=0.1 Score=24.22 Aligned_cols=22 Identities=23% Similarity=-0.025 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHchhHHHHHHh
Q 033182 41 KALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.+++.+|.++..+|++++|...
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHH
Confidence 4667788888888888888776
No 266
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.66 E-value=1.5 Score=36.96 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 70 (125)
...+...+|.++...|++++|...+++++..... ...++.++|.++...|++++|...++.++.+.
T Consensus 490 ~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 490 RIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3456678889999999999999999998866332 13567788999999999999999955554443
No 267
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=93.61 E-value=0.83 Score=26.72 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=31.6
Q ss_pred HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
...|...-..|++++|+..|..|+..|..++..+|+...
T Consensus 12 i~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~ 50 (77)
T smart00745 12 ISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKR 50 (77)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHH
Confidence 445566666899999999999999999999999887433
No 268
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.60 E-value=1.5 Score=29.61 Aligned_cols=80 Identities=9% Similarity=-0.058 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL 88 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~ 88 (125)
...........++...+.......-.+-|+.+..-..-|-.+...|+|.+|+.. |+...+-.|..+-..-.+.
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rv-------lr~l~~~~~~~p~~kAL~A 85 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARI-------LRELLSSAGAPPYGKALLA 85 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHH-------HHhhhccCCCchHHHHHHH
Confidence 334444444567777777777777777787777777777788888888888777 7777666666665555555
Q ss_pred HHHHHHH
Q 033182 89 RLQPLAE 95 (125)
Q Consensus 89 ~~~~~~~ 95 (125)
-|....+
T Consensus 86 ~CL~al~ 92 (153)
T TIGR02561 86 LCLNAKG 92 (153)
T ss_pred HHHHhcC
Confidence 5555544
No 269
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.42 E-value=0.96 Score=33.82 Aligned_cols=52 Identities=21% Similarity=0.130 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 11 NRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.-+......|++.+|...+..++..+|++..+...++.|+...|+.+.|...
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~i 190 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAI 190 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHH
Confidence 3455667789999999999999999999999999999999999999887765
No 270
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=93.41 E-value=0.95 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=26.7
Q ss_pred HHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 48 EAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
.-.-..|+|++|...|..++.+|..+++-+++.
T Consensus 14 ve~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~ 46 (75)
T cd02677 14 LEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSP 46 (75)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 333444999999999999999999999887663
No 271
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=93.38 E-value=0.14 Score=23.74 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECT 30 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~ 30 (125)
.+.+++|..+..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 567899999999999999998775
No 272
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=93.21 E-value=0.79 Score=37.14 Aligned_cols=78 Identities=21% Similarity=0.169 Sum_probs=65.8
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch---hHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182 18 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE---HFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLA 94 (125)
Q Consensus 18 ~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 94 (125)
-.+.+..|+.+|.+++..-|.....+.+++.++++.+ .--.|+.+ ...++++||....++..+.++...+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrD-------ch~Alrln~s~~kah~~la~aL~el 458 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRD-------CHVALRLNPSIQKAHFRLARALNEL 458 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHh-------HHhhccCChHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999998754 44567777 8889999999999999999998888
Q ss_pred HHHHHHHH
Q 033182 95 EEKLEKMK 102 (125)
Q Consensus 95 ~~~~~~~~ 102 (125)
....++..
T Consensus 459 ~r~~eal~ 466 (758)
T KOG1310|consen 459 TRYLEALS 466 (758)
T ss_pred hhHHHhhh
Confidence 87766654
No 273
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.15 E-value=2.5 Score=30.92 Aligned_cols=91 Identities=14% Similarity=0.129 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHH-HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKAL-IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
-..|+...+..--+.++|..|+..|+++....-++ ++.| +..|.|++...+.-.+... +++..+++
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~A-------Leky~~~d 225 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRA-------LEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHH-------HHHHHhcC
Confidence 34566777777778999999999999987765444 3333 4567888887888888888 88889999
Q ss_pred CCcHHHH--HHHHHHHHHHHHHHHHHH
Q 033182 78 PSNNQAK--RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 78 p~~~~~~--~~l~~~~~~~~~~~~~~~ 102 (125)
|...+++ ..+.++...+++.+...-
T Consensus 226 P~F~dsREckflk~L~~aieE~d~e~f 252 (288)
T KOG1586|consen 226 PAFTDSRECKFLKDLLDAIEEQDIEKF 252 (288)
T ss_pred CcccccHHHHHHHHHHHHHhhhhHHHH
Confidence 9876644 456777777776655443
No 274
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=93.11 E-value=0.61 Score=31.07 Aligned_cols=52 Identities=19% Similarity=0.129 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 59 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A 59 (125)
....++...+..|+|..|....+.++..+|++..+...++.++..+|.-.+.
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 3456777888899999999999999999999999999999999888766443
No 275
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.08 E-value=1.5 Score=32.50 Aligned_cols=77 Identities=19% Similarity=0.155 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHH----------HHHhHHHH
Q 033182 3 ELRSICHSNRGICFLKL------GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEE----------AIAGIQDL 66 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~------~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~----------A~~~~~~~ 66 (125)
+..+.++..+|.-.... +++++++..|.+++.++|.+.++|+..|..+...-..+. ...++..+
T Consensus 249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 328 (352)
T PF02259_consen 249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQA 328 (352)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHH
Confidence 34566777777777777 789999999999999999999999999998876543332 12223334
Q ss_pred HHHHHHHHhhCCC
Q 033182 67 MIVMKKILEFDPS 79 (125)
Q Consensus 67 ~~~~~~a~~l~p~ 79 (125)
+.=|-+++...|+
T Consensus 329 i~~y~~al~~~~~ 341 (352)
T PF02259_consen 329 IEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHhhCCC
Confidence 4447788887776
No 276
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=92.97 E-value=2.6 Score=33.36 Aligned_cols=58 Identities=12% Similarity=0.120 Sum_probs=51.2
Q ss_pred HHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 033182 45 RRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMKEEMIGKL 109 (125)
Q Consensus 45 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 109 (125)
.+..||.++++.+-|+.. --+.+-++|.+.-.+...+-+.+.++++.++.+..++..+
T Consensus 233 klv~CYL~~rkpdlALnh-------~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y 290 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNH-------SHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY 290 (569)
T ss_pred HHHHhhhhcCCCchHHHH-------HhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999 8899999999999999999999999999988885555544
No 277
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=92.63 E-value=1.2 Score=26.06 Aligned_cols=41 Identities=17% Similarity=0.338 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
.+...|.-.-..|+|++|+..|..|+..|..+++.+|+...
T Consensus 8 ~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~ 48 (75)
T cd02678 8 ELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKS 48 (75)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 34555666778899999999999999999999999886433
No 278
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.38 E-value=0.41 Score=32.29 Aligned_cols=59 Identities=10% Similarity=-0.054 Sum_probs=50.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~ 60 (125)
.|....+-..-|..++..|+|.+|+..++.+..-.+..+-+.-.++.|+..+|+.+.-.
T Consensus 40 rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 40 RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 34555566677899999999999999999999999998988889999999999886654
No 279
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.36 E-value=1.1 Score=35.87 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHHHHHHH
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS--NNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~~~~~~ 100 (125)
+-+..++|.|..++|+.++|+++ ++..++.+|. +-.++.+|.++...++...+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~-------~rdLlke~p~~~~l~IrenLie~LLelq~Yad~ 314 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKM-------FRDLLKEFPNLDNLNIRENLIEALLELQAYADV 314 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHH-------HHHHHhhCCccchhhHHHHHHHHHHhcCCHHHH
Confidence 44667899999999999999999 9999988775 455777777766555544333
No 280
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.33 E-value=3.4 Score=32.28 Aligned_cols=69 Identities=14% Similarity=0.301 Sum_probs=48.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH--HHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA--EAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+...+.+|..|.+|+.+++|..|++.|...+.. ..+. ..+.+..+++.-.+..++..-++--++.+.|.
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y--------i~r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~ 231 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLY--------IQRTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQ 231 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence 456788999999999999999999999887632 2222 23344455555555555555557778888886
No 281
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.25 E-value=3.8 Score=30.75 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 033182 22 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRL 90 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~ 90 (125)
.+.-+..+++|++.+|++.+.+..+-.+..+...-+...+. +++++..+|++...+....+.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~-------we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKK-------WEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHCCCChHHHHHHHHH
Confidence 45677889999999999999999999999998888888888 999999999988776655444
No 282
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.21 E-value=1.9 Score=31.62 Aligned_cols=56 Identities=20% Similarity=0.282 Sum_probs=45.9
Q ss_pred HHhcCHHHHHHHHHHHHhc----CCCC----hHHHHHHHHHHHHch-hHHHHHHhHHHHHHHHHH
Q 033182 17 LKLGKFEESIKECTKALEL----NPTY----MKALIRRAEAHEKLE-HFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 17 ~~~~~~~~A~~~~~~al~l----~p~~----~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~ 72 (125)
.+.|+++.|.-++.++-.+ +|+. ...+|+.|......+ ++++|+.+++++..+++.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~ 68 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEK 68 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh
Confidence 3579999999999987554 4443 568899999999999 999999997888777755
No 283
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.12 E-value=2.3 Score=30.09 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChHHHHHHHHHHHHchhHHHHHHh
Q 033182 11 NRGICFLKLGKFEESIKECTKALELNPT---YMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~---~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.++..+...|++++|+..+..++....+ ..-+-.|++.++..+|.+++|+..
T Consensus 94 ~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 94 ELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3445555556666666666655544322 133445555555555555555554
No 284
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=91.94 E-value=2.8 Score=31.44 Aligned_cols=71 Identities=15% Similarity=0.173 Sum_probs=54.0
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHchh-----HHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 27 KECTKALELNPTYMKALIRRAEAHEKLEH-----FEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 27 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~-----~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
..+++.++-+|.+..+|..+....-..-. ........+.-+-+|++|++-+|++.......-++...+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~ 81 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS 81 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH
Confidence 45788999999999999999988776654 333333466777779999999999888777766666655433
No 285
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=91.70 E-value=2.8 Score=33.39 Aligned_cols=49 Identities=10% Similarity=0.056 Sum_probs=44.5
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
|...+-.|+|..+........+.+| .+.++..+|.|++...+|++|-.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 4455668999999999999999999 799999999999999999999877
No 286
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.59 E-value=1.1 Score=34.77 Aligned_cols=67 Identities=18% Similarity=0.307 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELN------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 70 (125)
.+....+.++.++..+|....|.+.++.+.++. |..+....-+|.+|+..|+.+.|-.-|+.++-+.
T Consensus 204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHH
Confidence 456678899999999999999999999987774 5667888889999999999999999966666554
No 287
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.58 E-value=2.3 Score=32.65 Aligned_cols=74 Identities=18% Similarity=0.186 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------------C------------CCC---hHHHHHHHHHHHHc
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL--------------N------------PTY---MKALIRRAEAHEKL 53 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------------~------------p~~---~~~~~~~~~~~~~~ 53 (125)
|.....+..++.++..+|+++.|....++|+-. + +.| ..+.++....+...
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~R 116 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRR 116 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhc
Confidence 556778889999999999999999999988521 1 112 35778889999999
Q ss_pred hhHHHHHHhHHHHHHHHHHHHhhCCC-cHHH
Q 033182 54 EHFEEAIAGIQDLMIVMKKILEFDPS-NNQA 83 (125)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~a~~l~p~-~~~~ 83 (125)
|.+.-|.++ .+-.+.+||. ++-.
T Consensus 117 G~~rTAlE~-------~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 117 GCWRTALEW-------CKLLLSLDPDEDPLG 140 (360)
T ss_pred CcHHHHHHH-------HHHHHhcCCCCCcch
Confidence 999999999 9999999998 6553
No 288
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=91.43 E-value=1.8 Score=25.23 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=30.7
Q ss_pred HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
...|.-.-..|+|++|+..|..|+..|..++..+|+..
T Consensus 10 ~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~ 47 (75)
T cd02656 10 IKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPK 47 (75)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 44455566679999999999999999999999887743
No 289
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.26 E-value=4 Score=31.57 Aligned_cols=86 Identities=10% Similarity=-0.022 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHH---chhHHHHHHhHHHHHHHHHH-HHhh
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALEL----NPTYMKALIRRAEAHEK---LEHFEEAIAGIQDLMIVMKK-ILEF 76 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l----~p~~~~~~~~~~~~~~~---~~~~~~A~~~~~~~~~~~~~-a~~l 76 (125)
.+....++-..|....+|+.-++..+..-.+ -++.....+.+|.++-+ .|+.++|+.. +.. ....
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~i-------l~~~l~~~ 212 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQI-------LLPVLESD 212 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHH-------HHHHHhcc
Confidence 3455667888899999999999988887776 35667788889999998 9999999999 877 4455
Q ss_pred CCCcHHHHHHHHHHHHHHHHH
Q 033182 77 DPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 77 ~p~~~~~~~~l~~~~~~~~~~ 97 (125)
++.+++++-.++++++.+-..
T Consensus 213 ~~~~~d~~gL~GRIyKD~~~~ 233 (374)
T PF13281_consen 213 ENPDPDTLGLLGRIYKDLFLE 233 (374)
T ss_pred CCCChHHHHHHHHHHHHHHHH
Confidence 678899999999999877543
No 290
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.21 E-value=2.5 Score=34.44 Aligned_cols=75 Identities=19% Similarity=0.090 Sum_probs=60.8
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 033182 12 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQ 91 (125)
Q Consensus 12 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~ 91 (125)
++..+...+....+.-..+.++..+|++..++.+++.+....|....+... +...+....|++.....-+.+++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~------~~~~a~~~~~~~~~~~~~~~~~~ 146 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALAD------ISEIAEWLSPDNAEFLGHLIRFY 146 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHH------HHHHHHhcCcchHHHHhhHHHHH
Confidence 677777788888888999999999999999999999999988887777665 14448888999988777764444
Q ss_pred H
Q 033182 92 P 92 (125)
Q Consensus 92 ~ 92 (125)
+
T Consensus 147 ~ 147 (620)
T COG3914 147 Q 147 (620)
T ss_pred H
Confidence 3
No 291
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.07 E-value=7 Score=31.58 Aligned_cols=56 Identities=25% Similarity=0.207 Sum_probs=45.5
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 15 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 15 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
.-.++++|+..-..|++-+.-+|.+-.+|...|..-..+|+.+.|... |+-|++..
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRai-------felAi~qp 501 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAI-------FELAISQP 501 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHH-------HHHHhcCc
Confidence 344577888888888888888888888888888888888888888888 87777744
No 292
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.92 E-value=0.53 Score=31.37 Aligned_cols=40 Identities=23% Similarity=0.347 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALI 44 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~ 44 (125)
+-.+.+-++..+.+.++|+.+.++.+..+..+|+|..+.-
T Consensus 70 rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 70 RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3457788899999999999999999999999999988754
No 293
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=3.4 Score=31.00 Aligned_cols=85 Identities=20% Similarity=0.227 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHH----------------------------------HHhcCCCChHHHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTK----------------------------------ALELNPTYMKALIRRAEA 49 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~----------------------------------al~l~p~~~~~~~~~~~~ 49 (125)
..+.+-..++.||...|+++.|...+.. .+..||++..+.+.++..
T Consensus 166 ~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~ 245 (304)
T COG3118 166 ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQ 245 (304)
T ss_pred ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3455666778888888888665544433 234467788888888888
Q ss_pred HHHchhHHHHHHhHHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHHH
Q 033182 50 HEKLEHFEEAIAGIQDLMIVMKKILEFDPS--NNQAKRTILRLQPLAE 95 (125)
Q Consensus 50 ~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~--~~~~~~~l~~~~~~~~ 95 (125)
+...|+.+.|.+. +-..++.+.+ +..++..+-++...++
T Consensus 246 ~~~~g~~e~Ale~-------Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 246 LHLVGRNEAALEH-------LLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHcCCHHHHHHH-------HHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 8888888888877 7677776654 3456666666555554
No 294
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.58 E-value=3.5 Score=31.87 Aligned_cols=88 Identities=10% Similarity=-0.014 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALEL-NPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l-~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
.++..--.+++-+|+...-...+++++-. +|+. .-.+--++.+++..|-|++|.+. -.+++++||.+.=
T Consensus 138 la~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~-------A~ralqiN~~D~W 210 (491)
T KOG2610|consen 138 LAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQ-------ADRALQINRFDCW 210 (491)
T ss_pred hhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHH-------HHhhccCCCcchH
Confidence 34444445566677777777778887766 6554 44445578899999999999999 9999999999776
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~ 101 (125)
+......+.+.-.+..++.
T Consensus 211 a~Ha~aHVlem~~r~Keg~ 229 (491)
T KOG2610|consen 211 ASHAKAHVLEMNGRHKEGK 229 (491)
T ss_pred HHHHHHHHHHhcchhhhHH
Confidence 6666666665544444433
No 295
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=90.50 E-value=2.1 Score=28.48 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 100 (125)
.......+......|+|..|... ...++..+|+|.+++....++..++....+.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L-------~d~l~~adp~n~~ar~l~A~al~~lg~~~~~ 123 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAEL-------LDHLVFADPDNEEARQLKADALEQLGYQSEN 123 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHH-------HHHHHHH-TT-HHHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 45667788888999999999998 9999999999999999999999888866433
No 296
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.29 E-value=0.66 Score=37.25 Aligned_cols=48 Identities=19% Similarity=0.115 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 52 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 52 (125)
+-.+.||.|..|.-.|+.-.|..+|.+++..-..+++.|+++++|+..
T Consensus 334 s~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 334 SMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred chhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999873
No 297
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.12 E-value=5.4 Score=29.48 Aligned_cols=68 Identities=16% Similarity=0.093 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 72 (125)
.+..|..-+.+|...++|+.|-..+.++..-... -++++-..+.....+..+.++.+.+++++.+|.+
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3566788888888889999999988888844322 2566667777788889999999997777777654
No 298
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=90.10 E-value=4.5 Score=33.06 Aligned_cols=82 Identities=12% Similarity=0.008 Sum_probs=61.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHH-HHHHHHhcCCCChHHHHHH------HHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIK-ECTKALELNPTYMKALIRR------AEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~al~l~p~~~~~~~~~------~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
++....++.|++.+....|....+.. ..+-+....|++......+ +.....+++-.++... .+++.
T Consensus 97 ~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------l~~~~ 169 (620)
T COG3914 97 NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELA-------LERAV 169 (620)
T ss_pred CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHH-------HHHHH
Confidence 45567788899999888777555544 4445899999998877777 6666667777777777 88888
Q ss_pred hhCCCcHHHHHHHHHH
Q 033182 75 EFDPSNNQAKRTILRL 90 (125)
Q Consensus 75 ~l~p~~~~~~~~l~~~ 90 (125)
.+.|.++.+...+-..
T Consensus 170 d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 170 DLLPKYPRVLGALMTA 185 (620)
T ss_pred HhhhhhhhhHhHHHHH
Confidence 8899987766665555
No 299
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=89.93 E-value=2.2 Score=32.72 Aligned_cols=44 Identities=14% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 32 ALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 32 al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
.+..+|-+..+++.++.++..+|++..|.+.+++|+=+|++++.
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~ 75 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFH 75 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999999999999999999997665
No 300
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.66 E-value=6.5 Score=28.85 Aligned_cols=64 Identities=27% Similarity=0.244 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKL-EHFEEAIAGIQDLMIVM 70 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~ 70 (125)
.+.|...+.||.+ .+.++|+..+++++.+--+ -++-+..+|..|..- .+++.|+.+||.+-..|
T Consensus 74 at~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 74 ATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred HHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4556666666654 4777788888877766432 234455677777754 78888888844444443
No 301
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=89.33 E-value=4.8 Score=31.46 Aligned_cols=63 Identities=14% Similarity=0.196 Sum_probs=48.9
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC---------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 11 NRGICFLKLGKFEESIKECTKALELN---------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 11 ~~~~~~~~~~~~~~A~~~~~~al~l~---------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
.+..+|+-+|+|..|++..+-. .++ +.+...+|..|.+|+-+++|.+|++.....|.-..+.-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566777799999999877643 222 35677899999999999999999999666666666555
No 302
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=89.20 E-value=4.9 Score=36.18 Aligned_cols=66 Identities=20% Similarity=0.010 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
++|..+.-.|.+.+++.+|.+.++..++---.-.+.|..+|..++.+.+-+.|... +.+|++.-|.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~l-------L~rAL~~lPk 1596 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAAREL-------LKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHH-------HHHHHhhcch
Confidence 34555666677777777777777777776666677888888888888887888777 7777777776
No 303
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.19 E-value=1.1 Score=23.77 Aligned_cols=26 Identities=12% Similarity=0.267 Sum_probs=23.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 10 SNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
++++.+|+++|+++.|....+.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 57899999999999999999999953
No 304
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.87 E-value=5.4 Score=28.23 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY-MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
.+.+-.+++.+..++|++++|+..++... ++.+ +..-..+|.++..+|+-++|... |+++++.+++
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~--~~~w~~~~~elrGDill~kg~k~~Ar~a-------y~kAl~~~~s 191 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIK--EESWAAIVAELRGDILLAKGDKQEARAA-------YEKALESDAS 191 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccHHHHHHHHhhhHHHHcCchHHHHHH-------HHHHHHccCC
Confidence 34455666777777777777766554432 1111 22345577777777777777777 7777776544
No 305
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.86 E-value=4 Score=31.56 Aligned_cols=67 Identities=13% Similarity=0.067 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHH---hcCHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHH---------chhHHHHHHhHHHHHHHHHH
Q 033182 6 SICHSNRGICFLK---LGKFEESIKECTK-ALELNPTYMKALIRRAEAHEK---------LEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 6 ~~~~~~~~~~~~~---~~~~~~A~~~~~~-al~l~p~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~~~~~~~~ 72 (125)
..+-+..|.++-+ .|+.+.|+..+.. +...++.+++.+.-+|.+|-. ....++|+.+ |.+
T Consensus 179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~-------Y~k 251 (374)
T PF13281_consen 179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEW-------YRK 251 (374)
T ss_pred hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHH-------HHH
Confidence 4456678888888 8999999999999 555567889999988888753 3456788888 999
Q ss_pred HHhhCCC
Q 033182 73 ILEFDPS 79 (125)
Q Consensus 73 a~~l~p~ 79 (125)
+++++|+
T Consensus 252 gFe~~~~ 258 (374)
T PF13281_consen 252 GFEIEPD 258 (374)
T ss_pred HHcCCcc
Confidence 9999976
No 306
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.66 E-value=8 Score=28.60 Aligned_cols=66 Identities=18% Similarity=0.180 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALEL-----NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMK 71 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 71 (125)
+..|-..+....++..+.++...++++..+ .|+-+-.-..++.-....-+.++|++.||++|.|++
T Consensus 71 AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 71 AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHh
Confidence 345667778888889999999999998766 256566667777777888899999999888888854
No 307
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.37 E-value=8.1 Score=28.31 Aligned_cols=71 Identities=14% Similarity=0.156 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHH--------chhHHHHHHhHHHHHHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEK--------LEHFEEAIAGIQDLMIVMKKI 73 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~--------~~~~~~A~~~~~~~~~~~~~a 73 (125)
...+...++.++++.++|+.|+...++-+++.|.+ .-+++-+|.++.. +.--..|... |+..
T Consensus 70 ~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~-------f~~~ 142 (254)
T COG4105 70 SEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAA-------FKEL 142 (254)
T ss_pred cHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHH-------HHHH
Confidence 34567788999999999999999999999999865 4578888888763 3344666777 8888
Q ss_pred HhhCCCcHH
Q 033182 74 LEFDPSNNQ 82 (125)
Q Consensus 74 ~~l~p~~~~ 82 (125)
++.=|+.+-
T Consensus 143 i~ryPnS~Y 151 (254)
T COG4105 143 VQRYPNSRY 151 (254)
T ss_pred HHHCCCCcc
Confidence 888888644
No 308
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=88.34 E-value=6.3 Score=27.02 Aligned_cols=66 Identities=11% Similarity=0.124 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIV 69 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 69 (125)
..-..+..+|..|.+.|++++|++.|.++...-. .....+++.-.+....++|......++++-.+
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999776542 23678889999999999999999994444433
No 309
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=88.09 E-value=2.5 Score=22.36 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=23.4
Q ss_pred HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 43 LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 43 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
.+.+|.+|..+|+++.|... ++.++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~l-------L~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGAREL-------LEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHH-------HHHHHH
Confidence 46899999999999999999 988884
No 310
>PF13041 PPR_2: PPR repeat family
Probab=86.31 E-value=3.4 Score=21.73 Aligned_cols=39 Identities=18% Similarity=0.090 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALI 44 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~ 44 (125)
...|.-+-..|.+.|++++|.+.|++..+.+- .+...|.
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~ 42 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYN 42 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 45678888899999999999999999988762 3344433
No 311
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=85.82 E-value=5.3 Score=23.51 Aligned_cols=39 Identities=8% Similarity=0.119 Sum_probs=30.7
Q ss_pred HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
...|.-.-..|+|++|...|..|+..|..+++.+|+...
T Consensus 10 v~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~ 48 (75)
T cd02684 10 VVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQR 48 (75)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 344555667899999999999999999999988766443
No 312
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.50 E-value=10 Score=30.66 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-C-----ChHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP-T-----YMKALIRRAEAHEKLEHFEEAIAGIQDLMIV 69 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 69 (125)
+...+++-.|...+.++++.+|-....+.++... . .+..+..+|.+....|+-.++...|.-++.+
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamql 514 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQL 514 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHH
Confidence 4677899999999999999999999999988861 1 1335555778888999999999994444433
No 313
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.25 E-value=2.6 Score=19.40 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=25.3
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182 20 GKFEESIKECTKALELNPTYMKALIRRAEA 49 (125)
Q Consensus 20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 49 (125)
|+++.|...|++++...|..+..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467889999999999999999988877654
No 314
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.15 E-value=2.9 Score=25.44 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNP 37 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 37 (125)
...+..++|..+...|++++|+..++.++.+-.
T Consensus 40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 40 LAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 356688999999999999999999999998854
No 315
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=84.71 E-value=14 Score=27.28 Aligned_cols=94 Identities=15% Similarity=0.114 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CC-------------------------ChHHHHHHHHHHHHchhHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELN--PT-------------------------YMKALIRRAEAHEKLEHFE 57 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~-------------------------~~~~~~~~~~~~~~~~~~~ 57 (125)
.+.+.+..+...-..|+-.+|+...+..+... .. .....-..+.++...|+|.
T Consensus 183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~ 262 (352)
T PF02259_consen 183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL 262 (352)
T ss_pred CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence 34555566666667777788887777766611 00 1112233455555555555
Q ss_pred HHH------HhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 033182 58 EAI------AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKL 98 (125)
Q Consensus 58 ~A~------~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 98 (125)
... .....++..|..+.+++|++..++...+.....+-+..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~ 309 (352)
T PF02259_consen 263 DELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESD 309 (352)
T ss_pred HhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhh
Confidence 544 33445555599999999999999988888876665443
No 316
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.14 E-value=21 Score=28.96 Aligned_cols=63 Identities=11% Similarity=-0.026 Sum_probs=49.7
Q ss_pred HHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182 25 SIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLA 94 (125)
Q Consensus 25 A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 94 (125)
-...|..+...-+.+++.|.+...-..+.+.+.+-... |.+++..+|++++.|.....-.-.+
T Consensus 90 Iv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki-------~~~~l~~Hp~~~dLWI~aA~wefe~ 152 (568)
T KOG2396|consen 90 IVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKI-------FAAMLAKHPNNPDLWIYAAKWEFEI 152 (568)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHH-------HHHHHHhCCCCchhHHhhhhhHHhh
Confidence 44567778888888999999988877777777777777 9999999999999887665544333
No 317
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.94 E-value=8.2 Score=27.36 Aligned_cols=54 Identities=22% Similarity=0.189 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHchhHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNP----TYMKALIRRAEAHEKLEHFEEAI 60 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p----~~~~~~~~~~~~~~~~~~~~~A~ 60 (125)
+...+.+|..|. .-+...++..+-+++.+.+ -+++.+..++.+++++++++.|=
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 456677777776 4678889999999998853 35899999999999999999883
No 318
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=83.92 E-value=16 Score=28.68 Aligned_cols=84 Identities=20% Similarity=0.136 Sum_probs=62.3
Q ss_pred hhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh----HHHHHHhHHHHHHHHHHHHh
Q 033182 2 AELRSICHSNRGICFLKLG--KFEESIKECTKALELNPTYMKALIRRAEAHEKLEH----FEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~----~~~A~~~~~~~~~~~~~a~~ 75 (125)
+|..-.+|+.|..+..+.+ +|..=+..++++++.||.+..+|..+-.+...... ..+-+++ ..+++.
T Consensus 105 npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~f-------tt~~I~ 177 (421)
T KOG0529|consen 105 NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEF-------TTKLIN 177 (421)
T ss_pred CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHH-------HHHHHh
Confidence 5666788999999988755 47888889999999999998888776665554333 3455556 777777
Q ss_pred hCCCcHHHHHHHHHHHH
Q 033182 76 FDPSNNQAKRTILRLQP 92 (125)
Q Consensus 76 l~p~~~~~~~~l~~~~~ 92 (125)
-+++|-.++....-+..
T Consensus 178 ~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 178 DNFSNYSAWHYRSLLLS 194 (421)
T ss_pred ccchhhhHHHHHHHHHH
Confidence 78888888777666554
No 319
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=83.63 E-value=3.6 Score=31.57 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF 56 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 56 (125)
++..+.+++.++..+....++++|+++.+.+....|++......+..+-.....+
T Consensus 305 ~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~ 359 (372)
T KOG0546|consen 305 ERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY 359 (372)
T ss_pred ChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence 3566788999999999999999999999999999999988766666655554444
No 320
>PF12854 PPR_1: PPR repeat
Probab=83.47 E-value=3.3 Score=20.24 Aligned_cols=27 Identities=11% Similarity=0.128 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTK 31 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~ 31 (125)
+...|.-+-..|.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 345677778888888999988887764
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.04 E-value=13 Score=26.34 Aligned_cols=82 Identities=16% Similarity=0.020 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhc----CC---CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC------cHHHHHHH
Q 033182 21 KFEESIKECTKALEL----NP---TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS------NNQAKRTI 87 (125)
Q Consensus 21 ~~~~A~~~~~~al~l----~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~------~~~~~~~l 87 (125)
.++.|+..|.-|+.. ++ ..+..++++|=.|..+|+.+....+++.|+..|+++++.+.. ...+...+
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLi 171 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLI 171 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHH
Confidence 467777777665433 22 236788999999999999999999999999999999987633 24577789
Q ss_pred HHHHHHHHHHHHHHH
Q 033182 88 LRLQPLAEEKLEKMK 102 (125)
Q Consensus 88 ~~~~~~~~~~~~~~~ 102 (125)
+.+..++++..++.+
T Consensus 172 geL~rrlg~~~eA~~ 186 (214)
T PF09986_consen 172 GELNRRLGNYDEAKR 186 (214)
T ss_pred HHHHHHhCCHHHHHH
Confidence 999999998886665
No 322
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=82.84 E-value=2.7 Score=19.20 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
.|..+-.+|.+.|++++|...+++..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4667778888999999999988876654
No 323
>PRK10941 hypothetical protein; Provisional
Probab=82.81 E-value=6 Score=29.18 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 101 (125)
.+...++-.+|...++++.|+.+ .++.+.++|+++.-+.-.+-++.+++-...+.
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~-------~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~ 235 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRA-------SEALLQFDPEDPYEIRDRGLIYAQLDCEHVAL 235 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHH-------HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 45667788899999999999999 99999999999987777777777776554433
No 324
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=81.82 E-value=19 Score=31.27 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=52.9
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 033182 21 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEE 96 (125)
Q Consensus 21 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 96 (125)
.|.+|+..|++.. -.|.-+--|...|.+|..+|+|++-++. +.-|++.=|.++.+......+--++.+
T Consensus 534 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (932)
T PRK13184 534 DFTQALSEFSYLH-GGVGAPLEYLGKALVYQRLGEYNEEIKS-------LLLALKRYSQHPEISRLRDHLVYRLHE 601 (932)
T ss_pred HHHHHHHHHHHhc-CCCCCchHHHhHHHHHHHhhhHHHHHHH-------HHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 4677777776543 3467788999999999999999999999 999999999998866655555444443
No 325
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=81.65 E-value=12 Score=24.56 Aligned_cols=76 Identities=16% Similarity=0.191 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHH--hcCHHHHHHHHHHHHhcCCC------------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182 7 ICHSNRGICFLK--LGKFEESIKECTKALELNPT------------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 7 ~~~~~~~~~~~~--~~~~~~A~~~~~~al~l~p~------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 72 (125)
..|.-++..-.+ -|-|++|...|++++....+ ++-++-.++.++..+|+|++++.....+|-.|++
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 346666665554 46799999999999877522 3567888999999999999999998888888888
Q ss_pred HHhhCCCcHH
Q 033182 73 ILEFDPSNNQ 82 (125)
Q Consensus 73 a~~l~p~~~~ 82 (125)
==+++.+...
T Consensus 88 RGEL~qdeGk 97 (144)
T PF12968_consen 88 RGELHQDEGK 97 (144)
T ss_dssp H--TTSTHHH
T ss_pred ccccccccch
Confidence 7777776444
No 326
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.45 E-value=20 Score=26.81 Aligned_cols=70 Identities=19% Similarity=0.181 Sum_probs=50.7
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH-HHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 033182 20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHF-EEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEE 96 (125)
Q Consensus 20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 96 (125)
..-..|+...+.+|.++|-+-..|..+-.++.+++.. .+-+++ +.++++-+|.|-.++.-...+.+.++.
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~-------l~eI~e~npKNYQvWHHRr~ive~l~d 127 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEY-------LDEIIEDNPKNYQVWHHRRVIVELLGD 127 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHhCccchhHHHHHHHHHHHhcC
Confidence 4467788888888888888888887777777766544 455567 777888888887777666666655553
No 327
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.43 E-value=12 Score=31.25 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMK 71 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 71 (125)
+...-+++.||....+.+.|.+.+..|=+.||.++-.-+..-.+...-++-++|+..+++....+.
T Consensus 394 aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 394 AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhc
Confidence 345568899999999999999999999999999998888888888889999999999776666544
No 328
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.24 E-value=10 Score=28.79 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 101 (125)
.+...-.+..|...|.+.+|++. .+++++++|=+.+.+..+-.+....++..+..
T Consensus 279 ~kllgkva~~yle~g~~neAi~l-------~qr~ltldpL~e~~nk~lm~~la~~gD~is~~ 333 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQL-------HQRALTLDPLSEQDNKGLMASLATLGDEISAI 333 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHH-------HHHHhhcChhhhHHHHHHHHHHHHhccchhhh
Confidence 44555677888999999999999 99999999999999999988888887754443
No 329
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=80.81 E-value=24 Score=27.96 Aligned_cols=69 Identities=12% Similarity=0.089 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALEL----NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
++..+-+=.+|..-+.|+.|...-.+..-- +..+++..|.+|.+..-+++|..|..+ +-.|+...|.+.
T Consensus 209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~-------~~qa~rkapq~~ 281 (493)
T KOG2581|consen 209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEY-------FLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHH-------HHHHHHhCcchh
Confidence 344444455555566677776655554311 124567778899999999999999999 999999999743
No 330
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=80.70 E-value=6.3 Score=25.20 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 23 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 23 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
-.++..|+++..+.|..+..++.+|.=+-...-|++++.- .++++.+
T Consensus 61 l~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~k-------ak~~Lsv 107 (111)
T PF04781_consen 61 LGSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKK-------AKRGLSV 107 (111)
T ss_pred HHhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHH-------HHHHhcc
Confidence 4588899999999999999999999888888888888888 8888775
No 331
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=80.54 E-value=12 Score=23.86 Aligned_cols=79 Identities=6% Similarity=0.029 Sum_probs=53.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHchhHH----HHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 12 RGICFLKLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEHFE----EAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 12 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~~~~~~~~~~~~~----~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
++.-+++.|++-.|++..+..+...++.. -.+..-|.++..+..-. .=..+.-.+..-+.++..+.|......
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 56778899999999999999999988766 44555677765544331 111122333333888888888886666
Q ss_pred HHHHHH
Q 033182 85 RTILRL 90 (125)
Q Consensus 85 ~~l~~~ 90 (125)
..+++-
T Consensus 82 ~~la~~ 87 (111)
T PF04781_consen 82 FELASQ 87 (111)
T ss_pred HHHHHH
Confidence 666654
No 332
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=80.02 E-value=22 Score=26.58 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHH-HHHHhHHHHHHHHHHHHhhCCC
Q 033182 2 AELRSICHSNRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE-EAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~-~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+|-.=++|.-|-.+...++. ..+-+...+..+.-+|+|-..|+.+-.+....|+.. .-+.. .+.++..+..
T Consensus 73 NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef-------~~~~l~~DaK 145 (318)
T KOG0530|consen 73 NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF-------TKLMLDDDAK 145 (318)
T ss_pred CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH-------HHHHHhcccc
Confidence 45666788888888877654 667788889999999999999999999999999887 66777 8999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~ 100 (125)
|-.++....=+.+.++.....
T Consensus 146 NYHaWshRqW~~r~F~~~~~E 166 (318)
T KOG0530|consen 146 NYHAWSHRQWVLRFFKDYEDE 166 (318)
T ss_pred chhhhHHHHHHHHHHhhHHHH
Confidence 988888888777777765443
No 333
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=79.88 E-value=13 Score=28.53 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
.+-.+.+.-..+.|+.+.|... |+-++.++|+++++....+.....-.
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~l-------feHAlalaP~~p~~L~e~G~f~E~~~ 164 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTL-------FEHALALAPTNPQILIEMGQFREMHN 164 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHH-------HHHHHhcCCCCHHHHHHHhHHHHhhh
Confidence 3455666667788999999999 99999999999999888777655443
No 334
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=78.50 E-value=19 Score=24.70 Aligned_cols=50 Identities=24% Similarity=0.165 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 22 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
-+..+...++.+...| ++..+.+++.++...|+.++|.+. ..++..+-|.
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~-------~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQW-------LARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCc
Confidence 3445566667777777 488999999999999999999999 8888888883
No 335
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=77.72 E-value=3.3 Score=30.26 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM 40 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~ 40 (125)
|.-..-|+..|....+.|++..|.+.|++++++||.+.
T Consensus 26 p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 26 PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 34455688888888999999999999999999999763
No 336
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.62 E-value=28 Score=26.33 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=52.5
Q ss_pred hcCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 19 LGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 19 ~~~~~~A~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
..+..+|+..|.+++.+.+.. .+++-..-.+...+++|++-...|...+-..+.|+..+-+...+..
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~ 110 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINS 110 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 457899999999999999876 4566777788889999999988877777767777777766555443
No 337
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.08 E-value=41 Score=27.86 Aligned_cols=82 Identities=17% Similarity=0.149 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----C----------------CCC---hHHHHHHHHHHHHchhHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL-----N----------------PTY---MKALIRRAEAHEKLEHFEE 58 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~----------------p~~---~~~~~~~~~~~~~~~~~~~ 58 (125)
|....-+...+.++..+|+.+-|....++++-. . |.| ..+.++....+.+.|.+..
T Consensus 281 PYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rT 360 (665)
T KOG2422|consen 281 PYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRT 360 (665)
T ss_pred CcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHH
Confidence 445556677888888899988777776666521 1 333 3466777788889999999
Q ss_pred HHHhHHHHHHHHHHHHhhCCC-cHHHHHHHHHHH
Q 033182 59 AIAGIQDLMIVMKKILEFDPS-NNQAKRTILRLQ 91 (125)
Q Consensus 59 A~~~~~~~~~~~~~a~~l~p~-~~~~~~~l~~~~ 91 (125)
|..+ ++-.++++|. ++-.-..+.+++
T Consensus 361 A~E~-------cKlllsLdp~eDPl~~l~~ID~~ 387 (665)
T KOG2422|consen 361 ALEW-------CKLLLSLDPSEDPLGILYLIDIY 387 (665)
T ss_pred HHHH-------HHHHhhcCCcCCchhHHHHHHHH
Confidence 9999 9999999998 776666666555
No 338
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=76.69 E-value=26 Score=27.10 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELN--PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
-.|++.+.-+..-.+.++...+...... ..+.-.+--+|..+.++|+-++|... |.+++.+.++..+..+.
T Consensus 332 ~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a-------ydrAi~La~~~aer~~l 404 (415)
T COG4941 332 TLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA-------YDRAIALARNAAERAFL 404 (415)
T ss_pred eehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH-------HHHHHHhcCChHHHHHH
Confidence 3477777666666666666665554442 24555677799999999999999999 99999999998887666
Q ss_pred HHHHH
Q 033182 87 ILRLQ 91 (125)
Q Consensus 87 l~~~~ 91 (125)
+.++.
T Consensus 405 ~~r~~ 409 (415)
T COG4941 405 RQRLD 409 (415)
T ss_pred HHHHH
Confidence 65543
No 339
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=75.91 E-value=11 Score=28.07 Aligned_cols=57 Identities=19% Similarity=0.312 Sum_probs=47.6
Q ss_pred CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182 38 TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 101 (125)
.+..++..++..+...|+++.++.. +++.+..+|-+..++..+-..+..-+.+....
T Consensus 151 ~~~~~l~~lae~~~~~~~~~~~~~~-------l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai 207 (280)
T COG3629 151 LFIKALTKLAEALIACGRADAVIEH-------LERLIELDPYDEPAYLRLMEAYLVNGRQSAAI 207 (280)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHH-------HHHHHhcCccchHHHHHHHHHHHHcCCchHHH
Confidence 3467888899999999999999999 99999999999999988888877666554443
No 340
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=75.59 E-value=23 Score=25.49 Aligned_cols=57 Identities=18% Similarity=0.241 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHchhHHHHHHh
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
..+...+|..|+..|+|+.|+..++.+...-. -.......+..|...+|+.+..+..
T Consensus 178 ~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 178 SYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44566788889999999999999988854421 1245666777788888887776654
No 341
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.21 E-value=15 Score=22.04 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHH---HHHHHHHHchhHHHHHHh
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALI---RRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~---~~~~~~~~~~~~~~A~~~ 62 (125)
..+.-....|.-++..++.+.|+...++++...++.+..+. -+..+|+..|+|.+.+++
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777788899999999999999999877655433 456778889999888877
No 342
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=74.34 E-value=15 Score=21.68 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
.+...|.-.=..|+|++|+.+|+.+..+|..++...
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~ 43 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAG 43 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhc
Confidence 345556666678999999999999999998876655
No 343
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=74.00 E-value=19 Score=22.50 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 54 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 54 (125)
+..-....|....-.|+|..|.+...++-+..+..+-.+..-+.+-..+|
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 33445567788888999999999999998877766667666666655554
No 344
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.96 E-value=62 Score=29.06 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.+.+|..+|.+..+.|...+|+..|-++ +++..|...-.+-...|+|++-+++
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~y 1155 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKY 1155 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHH
Confidence 3678999999999999999999998776 7888899999999999999999888
No 345
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=72.75 E-value=11 Score=31.25 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=34.1
Q ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCCChH--HHHHHHHHHHHchhHHHHHHh
Q 033182 7 ICHSNRGICF-LKLGKFEESIKECTKALELNPTYMK--ALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 7 ~~~~~~~~~~-~~~~~~~~A~~~~~~al~l~p~~~~--~~~~~~~~~~~~~~~~~A~~~ 62 (125)
+.+-+++..| ..+|+-.+|+.++..++-..|+..+ +++.+|-++...|.-.+|.-.
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iI 271 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVI 271 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhhe
Confidence 3344444444 4468888888888888877665433 455555556666655555544
No 346
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=71.73 E-value=14 Score=20.88 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
+..+.+.|.-.=+.|++++|+..|..++..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 445677788888899999999999887643
No 347
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=71.49 E-value=8.8 Score=17.64 Aligned_cols=29 Identities=21% Similarity=0.154 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELN 36 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 36 (125)
.|..+-.+|.+.|++++|...|......+
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g 30 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERG 30 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 35666778889999999999998876553
No 348
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.35 E-value=36 Score=27.63 Aligned_cols=74 Identities=18% Similarity=0.059 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhc-----CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch---hHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 8 CHSNRGICFLKLG-----KFEESIKECTKALELNPTYMKALIRRAEAHEKLE---HFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 8 ~~~~~~~~~~~~~-----~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+.+.+|.+|.+-. ++..|...+.++-.++ ++.+.+.+|.++..-. ++..|..+ |..|.+ -+
T Consensus 290 a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~y-------y~~Aa~--~G 358 (552)
T KOG1550|consen 290 AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEY-------YSLAAK--AG 358 (552)
T ss_pred cccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHH-------HHHHHH--cC
Confidence 4567788887732 5677888887776554 4567778888887665 45677777 666655 35
Q ss_pred cHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQP 92 (125)
Q Consensus 80 ~~~~~~~l~~~~~ 92 (125)
+..+...++.++.
T Consensus 359 ~~~A~~~la~~y~ 371 (552)
T KOG1550|consen 359 HILAIYRLALCYE 371 (552)
T ss_pred ChHHHHHHHHHHH
Confidence 5566666666554
No 349
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=71.29 E-value=42 Score=30.77 Aligned_cols=84 Identities=12% Similarity=0.056 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+|...+..++++++-+.|...+.+|++.-|. +.+...-.|+.-.+.|+-+.+... |+..+.-.|.-.+.
T Consensus 1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtl-------fEgll~ayPKRtDl 1636 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTL-------FEGLLSAYPKRTDL 1636 (1710)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHH-------HHHHHhhCccchhH
Confidence 457888888998988889999999999999887 788888888999999999999999 99999999988888
Q ss_pred HHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEE 96 (125)
Q Consensus 84 ~~~l~~~~~~~~~ 96 (125)
|....+.....++
T Consensus 1637 W~VYid~eik~~~ 1649 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGD 1649 (1710)
T ss_pred HHHHHHHHHccCC
Confidence 8777766555443
No 350
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=70.66 E-value=20 Score=21.40 Aligned_cols=36 Identities=14% Similarity=0.089 Sum_probs=27.3
Q ss_pred HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 43 LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 43 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+...|..+-..|..+.|+.+|..++..+.+.+.+..
T Consensus 11 ~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~ 46 (79)
T cd02679 11 EISKALRADEWGDKEQALAHYRKGLRELEEGIAVPV 46 (79)
T ss_pred HHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 344555555668888999998888888999988754
No 351
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=70.19 E-value=29 Score=28.55 Aligned_cols=66 Identities=11% Similarity=-0.038 Sum_probs=56.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
+|.+...|+.+-.-+..+ .+++.-..|++.+..-|..+.+|-......+...+|+.-... |.+|+.
T Consensus 16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkL-------F~RCLv 81 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKL-------FSRCLV 81 (656)
T ss_pred CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHH-------HHHHHH
Confidence 577788888888777555 899999999999999999999999999999988888887777 777765
No 352
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=69.95 E-value=57 Score=26.74 Aligned_cols=59 Identities=15% Similarity=0.086 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---C------CChHHHHHHHHHHHHchhHHHHHHh
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELN---P------TYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~---p------~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
....+.+..+.+.+-.++|..|....+.+.... | ..+..++-.|..+...|+.+.|...
T Consensus 359 l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~ 426 (608)
T PF10345_consen 359 LQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQ 426 (608)
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 345567788888888999999998888776553 2 2478899999999999999999999
No 353
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=69.73 E-value=22 Score=21.40 Aligned_cols=54 Identities=17% Similarity=0.018 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 033182 38 TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKL 98 (125)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 98 (125)
+-.+.....|.-++...+.++|+.. |+++++..++.++-...++-+..+..+..
T Consensus 4 ~~ak~~ie~GlkLY~~~~~~~Al~~-------W~~aL~k~~~~~~rf~~lG~l~qA~~e~G 57 (80)
T PF10579_consen 4 DQAKQQIEKGLKLYHQNETQQALQK-------WRKALEKITDREDRFRVLGYLIQAHMEWG 57 (80)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHH-------HHHHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence 3456677788889999999999999 99999999998888888888777776654
No 354
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=67.46 E-value=65 Score=27.25 Aligned_cols=63 Identities=17% Similarity=0.139 Sum_probs=43.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CChH---HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNP--TYMK---ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p--~~~~---~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
-.|-|..+..-.-|+++.+.|++.+.+-| .-.. .|+......+.--+.+.|.+. |++|++.-|
T Consensus 514 i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL-------FEqaL~~Cp 581 (835)
T KOG2047|consen 514 IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL-------FEQALDGCP 581 (835)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH-------HHHHHhcCC
Confidence 34666665555568899999999888863 3233 344455555556667777777 999999887
No 355
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.20 E-value=31 Score=24.36 Aligned_cols=30 Identities=17% Similarity=0.254 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKAL 33 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 33 (125)
.+..+..-+|.+-.+.|+|..|.+.|....
T Consensus 165 mR~sArEALglAa~kagd~a~A~~~F~qia 194 (221)
T COG4649 165 MRHSAREALGLAAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred hHHHHHHHHhHHHHhccchHHHHHHHHHHH
Confidence 344444445555555555555555554443
No 356
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=66.99 E-value=12 Score=17.35 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
.|..+-.++.+.|+++.|...++.-.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4667778888899999998888876553
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.78 E-value=63 Score=25.64 Aligned_cols=28 Identities=11% Similarity=-0.088 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHHHHchhHHHHHHhHH
Q 033182 37 PTYMKALIRRAEAHEKLEHFEEAIAGIQ 64 (125)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 64 (125)
.++...|-.+|...+.+|+++-|..+++
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3578899999999999999999999933
No 358
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=66.22 E-value=49 Score=27.31 Aligned_cols=65 Identities=11% Similarity=0.122 Sum_probs=53.9
Q ss_pred HHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 30 TKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 30 ~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++-++.+|.+..+|+.+-.-+..+ .+++.... |++.+..-|..+.++....+-..+-++....++
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~-------YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEk 74 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRET-------YEQLVNVFPSSPRAWKLYIERELASKDFESVEK 74 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHH-------HHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHH
Confidence 677899999999999998888777 99999999 999999999999988877776666666554444
No 359
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=66.16 E-value=19 Score=21.28 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=18.5
Q ss_pred HHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182 46 RAEAHEKLEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 46 ~~~~~~~~~~~~~A~~~~~~~~~~~~~ 72 (125)
.|..-=..|+|++|...|..|+..|..
T Consensus 12 ~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 12 QAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 333444567788888888888777766
No 360
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.68 E-value=74 Score=26.03 Aligned_cols=67 Identities=22% Similarity=0.096 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc---CC----CChHHHHHHHHHHHHchh-HHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALEL---NP----TYMKALIRRAEAHEKLEH-FEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l---~p----~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
+.-.|.++...|+...|...|.-++.. .. -.|-++|.+|..+..++. ..++..+ +.+|-....++
T Consensus 452 ~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~-------L~kAr~~~~dY 524 (546)
T KOG3783|consen 452 YLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARAL-------LLKAREYASDY 524 (546)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHH-------HHHHHhhcccc
Confidence 556799999999999999999887732 22 237799999999999999 9999999 99998877664
Q ss_pred HH
Q 033182 81 NQ 82 (125)
Q Consensus 81 ~~ 82 (125)
.-
T Consensus 525 ~l 526 (546)
T KOG3783|consen 525 EL 526 (546)
T ss_pred ch
Confidence 33
No 361
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=64.46 E-value=24 Score=20.85 Aligned_cols=31 Identities=13% Similarity=0.189 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
.+.-+..+|.-.=+.|+|++|+..|..++..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4455666777777789999999988887643
No 362
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.34 E-value=68 Score=26.63 Aligned_cols=58 Identities=17% Similarity=0.185 Sum_probs=49.7
Q ss_pred hcCHHHHHHHHHHHHhcC------------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 19 LGKFEESIKECTKALELN------------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 19 ~~~~~~A~~~~~~al~l~------------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
.+.|++|...|.-++... |-+...++..+.+...+|+.+.|.+.|++++=++.+++.-
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp 320 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHP 320 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcc
Confidence 456889999998776553 4567899999999999999999999999999999999874
No 363
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=64.05 E-value=54 Score=23.91 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhc----CC------C----ChHHHHHHHHHHHHchhHHHHHHhHHHHH
Q 033182 3 ELRSICHSNRGICFLKLG-KFEESIKECTKALEL----NP------T----YMKALIRRAEAHEKLEHFEEAIAGIQDLM 67 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l----~p------~----~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 67 (125)
...+..++|.|......+ +++.|...+++++.+ .+ + ....+..++.++...+.++...+. .
T Consensus 32 ~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka----~ 107 (278)
T PF08631_consen 32 EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKA----L 107 (278)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHH----H
Confidence 346778999999999999 999999999999877 32 1 245777889999888877544332 3
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHH
Q 033182 68 IVMKKILEFDPSNNQAKRTILRL 90 (125)
Q Consensus 68 ~~~~~a~~l~p~~~~~~~~l~~~ 90 (125)
.+.+.+-..-|+.+.+...--++
T Consensus 108 ~~l~~l~~e~~~~~~~~~L~l~i 130 (278)
T PF08631_consen 108 NALRLLESEYGNKPEVFLLKLEI 130 (278)
T ss_pred HHHHHHHHhCCCCcHHHHHHHHH
Confidence 33544555556666666333333
No 364
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=63.51 E-value=37 Score=28.59 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC----CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNP----TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
.++|...|..|-..|+.+.|-..|+++.+.+= +-...|..-|..-....+++.|... +++|...
T Consensus 387 ~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~l-------m~~A~~v 454 (835)
T KOG2047|consen 387 GTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKL-------MRRATHV 454 (835)
T ss_pred hhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHH-------HHhhhcC
Confidence 46899999999999999999999999998863 3367999999999999999999998 7666654
No 365
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=62.89 E-value=73 Score=25.05 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhH---HHH--HHhHHHHHHHHHHHHhhC
Q 033182 22 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHF---EEA--IAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~---~~A--~~~~~~~~~~~~~a~~l~ 77 (125)
...|+.++++|.. .+.|..|...|.++..+|+. +.. -.+|+.|..++.+|...-
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~at 392 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKAT 392 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhcc
Confidence 3445666665543 67789999999999999987 233 234888888888887754
No 366
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.62 E-value=85 Score=25.69 Aligned_cols=109 Identities=16% Similarity=0.181 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCCCC----------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKAL-ELNPTY----------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKI 73 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al-~l~p~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a 73 (125)
..-+-.|++..|.+.++-+. +.+++ .++|.+ ...+|-.|...++++++.+|... +.+.
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~-------l~e~ 471 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRF-------LRET 471 (629)
T ss_pred HHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHH-------HHHH
Confidence 34455677777877666553 22222 234442 45777888888999999999999 8888
Q ss_pred HhhCCC------cHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhhhhhhhHHHHHhhhh
Q 033182 74 LEFDPS------NNQAKRTILRLQPLAEEKLEKMK-----EEMIGKLGNDFLLRFHFLLIKK 124 (125)
Q Consensus 74 ~~l~p~------~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 124 (125)
+++... .......|+.+..-+++..+..+ ...-+++.+..+..++.+...+
T Consensus 472 Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~ 533 (629)
T KOG2300|consen 472 LKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTD 533 (629)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHH
Confidence 887522 12244556666666665555544 2222333555555555555443
No 367
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=62.12 E-value=33 Score=22.22 Aligned_cols=37 Identities=16% Similarity=0.169 Sum_probs=29.4
Q ss_pred HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182 44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI 87 (125)
Q Consensus 44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l 87 (125)
..+|+.+...|++++|..+ |-+|+..-|.-.+....+
T Consensus 67 V~lGE~L~~~G~~~~aa~h-------f~nAl~V~~qP~~LL~i~ 103 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEH-------FYNALKVCPQPAELLQIY 103 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHH-------HHHHHHTSSSHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHH-------HHHHHHhCCCHHHHHHHH
Confidence 4589999999999999999 999999988865544433
No 368
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.11 E-value=65 Score=26.18 Aligned_cols=82 Identities=21% Similarity=0.141 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHch-----hHHHHHHhHHHHHHH
Q 033182 5 RSICHSNRGICFLKL-----GKFEESIKECTKALE-----LNPTYMKALIRRAEAHEKLE-----HFEEAIAGIQDLMIV 69 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~-----l~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~~~~ 69 (125)
++...+.+|.||..- .+.+.|+.++..+.. ....++.+.+.+|.+|.+-. +++.|...
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~------- 315 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKL------- 315 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHH-------
Confidence 456677888888763 578999999998876 11226778899999999843 56677777
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 70 MKKILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 70 ~~~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
|.++-.+ +++.+...++.++..-.
T Consensus 316 ~~~aA~~--g~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 316 YTKAAEL--GNPDAQYLLGVLYETGT 339 (552)
T ss_pred HHHHHhc--CCchHHHHHHHHHHcCC
Confidence 8887775 45566666776664433
No 369
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=61.42 E-value=46 Score=29.14 Aligned_cols=72 Identities=11% Similarity=0.019 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------------------cCCCChHHHHHHHHHHHHchhHHHHHHhH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALE---------------------LNPTYMKALIRRAEAHEKLEHFEEAIAGI 63 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---------------------l~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 63 (125)
+.+.|.-+|...-..|+.+.|+..|+.+-. ....+..+.|.+|.-|...|++.+|+..+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456777788888888999999988887631 12456778899999999999999999997
Q ss_pred HHHHHHHHHHHhhC
Q 033182 64 QDLMIVMKKILEFD 77 (125)
Q Consensus 64 ~~~~~~~~~a~~l~ 77 (125)
++++-. ..|+++-
T Consensus 991 TrAqaf-snAIRlc 1003 (1416)
T KOG3617|consen 991 TRAQAF-SNAIRLC 1003 (1416)
T ss_pred HHHHHH-HHHHHHH
Confidence 777663 4555553
No 370
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=61.32 E-value=29 Score=20.45 Aligned_cols=30 Identities=13% Similarity=0.242 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALE 34 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 34 (125)
.+.-+...|.-.=+.|+|++|+..|..++.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie 34 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGID 34 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 445567777777778899988888887764
No 371
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=61.12 E-value=17 Score=26.96 Aligned_cols=48 Identities=19% Similarity=0.245 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 49 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 49 (125)
+|.++.-+-.+|.+|.++|.+..|+.+++..+..=|+.+.+-.-++..
T Consensus 211 ~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 211 NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 344555566799999999999999999999999999988775554443
No 372
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=60.81 E-value=82 Score=24.91 Aligned_cols=70 Identities=26% Similarity=0.204 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 21 KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 21 ~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
-+++-+.....+++.+|+..-+|+.+.-++.+.+.. .+++=|-+++++++.||.|-.++....=+...++
T Consensus 90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~-----~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~ 159 (421)
T KOG0529|consen 90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS-----DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAE 159 (421)
T ss_pred hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc-----hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHh
Confidence 355566777889999999999999999999977765 2333334499999999988776655555544444
No 373
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=60.33 E-value=22 Score=25.02 Aligned_cols=38 Identities=16% Similarity=0.309 Sum_probs=30.8
Q ss_pred HHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 033182 46 RAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQ 91 (125)
Q Consensus 46 ~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~ 91 (125)
...++++.|+|++|.+. +++..+ +|++..-...|..+-
T Consensus 117 aV~VCm~~g~Fk~A~ei-------Lkr~~~-d~~~~~~r~kL~~II 154 (200)
T cd00280 117 AVAVCMENGEFKKAEEV-------LKRLFS-DPESQKLRMKLLMII 154 (200)
T ss_pred HHHHHHhcCchHHHHHH-------HHHHhc-CCCchhHHHHHHHHH
Confidence 45678899999999999 999999 888877666666553
No 374
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=59.92 E-value=51 Score=22.21 Aligned_cols=51 Identities=25% Similarity=0.154 Sum_probs=33.0
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 18 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 18 ~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
.+|+-+.-.+.+....+-+..++..+..+|.+|.+.|+-.+|-+. +++|-+
T Consensus 98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~el-------l~~ACe 148 (161)
T PF09205_consen 98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANEL-------LKEACE 148 (161)
T ss_dssp HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHH-------HHHHHH
T ss_pred HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHH-------HHHHHH
Confidence 345555444555555555567899999999999999999999998 777665
No 375
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=58.27 E-value=52 Score=22.46 Aligned_cols=34 Identities=24% Similarity=0.228 Sum_probs=28.4
Q ss_pred ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 39 YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
...++..+|.-|.+.|+++.|.+. |.++.....+
T Consensus 35 ir~~~~~l~~~~~~~Gd~~~A~k~-------y~~~~~~~~~ 68 (177)
T PF10602_consen 35 IRMALEDLADHYCKIGDLEEALKA-------YSRARDYCTS 68 (177)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHH-------HHHHhhhcCC
Confidence 367899999999999999999999 7776665433
No 376
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=57.10 E-value=51 Score=28.27 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH----------------------hcCCCChHHHHHHHHHHHHchhHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKAL----------------------ELNPTYMKALIRRAEAHEKLEHFEEAI 60 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al----------------------~l~p~~~~~~~~~~~~~~~~~~~~~A~ 60 (125)
+..-.+|-++|..+..+-.|++|.++|+..- ..-|++.+..-.+|..+...|--++|+
T Consensus 793 ~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV 872 (1189)
T KOG2041|consen 793 EGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAV 872 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHH
Confidence 4566788899999999999999988887642 112777777777888888888888887
Q ss_pred Hh
Q 033182 61 AG 62 (125)
Q Consensus 61 ~~ 62 (125)
+.
T Consensus 873 ~a 874 (1189)
T KOG2041|consen 873 EA 874 (1189)
T ss_pred HH
Confidence 76
No 377
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=56.33 E-value=40 Score=19.92 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCCChHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKA 42 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-------~p~~~~~ 42 (125)
.+.-+..++.-+=+.|++++|+.+|..++.+ -|+...-
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k 49 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTR 49 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 4556777888888889999888888877644 4666553
No 378
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=56.15 E-value=1.2e+02 Score=25.20 Aligned_cols=53 Identities=9% Similarity=-0.041 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.....+..+-..+..+.|-..|++.+..+|+ .+++..+.-++..|-...|...
T Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 96 (578)
T PRK15490 44 AMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLI 96 (578)
T ss_pred HHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHH
Confidence 3445566666677888888899999999888 6777888888888888888766
No 379
>PF15469 Sec5: Exocyst complex component Sec5
Probab=54.85 E-value=65 Score=21.87 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=11.6
Q ss_pred HhcCHHHHHHHHHHHHhc
Q 033182 18 KLGKFEESIKECTKALEL 35 (125)
Q Consensus 18 ~~~~~~~A~~~~~~al~l 35 (125)
+.|+|+.++.+|.++..+
T Consensus 98 ~~~dy~~~i~dY~kak~l 115 (182)
T PF15469_consen 98 KKGDYDQAINDYKKAKSL 115 (182)
T ss_pred HcCcHHHHHHHHHHHHHH
Confidence 456777777777666544
No 380
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=52.13 E-value=48 Score=25.83 Aligned_cols=54 Identities=19% Similarity=0.190 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
+...|.-++.++++..|...|..|..+- -.+..+++.+|.+++..+.++.++..
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5567888888999999999999987763 24678999999999999999988865
No 381
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=51.80 E-value=68 Score=21.20 Aligned_cols=71 Identities=17% Similarity=0.056 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---------------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPT---------------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKI 73 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a 73 (125)
+...|...++.+++-.++-.|.+|+.+..+ ..-+.+|+|..++.+|+-+-.+++++-| -+++
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlA---SE~V 80 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLA---SEKV 80 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHH---HHHH
Confidence 346677788888888888888888765311 2457899999999999999998882221 3456
Q ss_pred HhhCCCcHH
Q 033182 74 LEFDPSNNQ 82 (125)
Q Consensus 74 ~~l~p~~~~ 82 (125)
+.+-|..+.
T Consensus 81 ltLiPQCp~ 89 (140)
T PF10952_consen 81 LTLIPQCPN 89 (140)
T ss_pred HHhccCCCC
Confidence 667776443
No 382
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=51.57 E-value=57 Score=26.62 Aligned_cols=53 Identities=17% Similarity=0.055 Sum_probs=46.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 10 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.+++..-+..|+|.-+.+...+++-.+|.+..+....+.++.++|--.+...+
T Consensus 456 l~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~w 508 (655)
T COG2015 456 LELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAESATW 508 (655)
T ss_pred HHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhccchh
Confidence 46677777899999999999999999999999999999999999976666543
No 383
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=51.56 E-value=26 Score=16.36 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHH
Q 033182 26 IKECTKALELNPTYMKALIRRAEAHEK 52 (125)
Q Consensus 26 ~~~~~~al~l~p~~~~~~~~~~~~~~~ 52 (125)
+.....++..+|.+..+|..+--+...
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 456788999999999999887766554
No 384
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=51.48 E-value=86 Score=22.28 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHHHH
Q 033182 22 FEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS----NNQAKRTILRLQPLAEE 96 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~----~~~~~~~l~~~~~~~~~ 96 (125)
-+.|...|-++-.... +.+...+.+|..|. ..+.++|+.. +.+++++.+. ++++...|.+++...++
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~l-------l~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQL-------LLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHH-------HHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 4556555544433332 56788888887766 7778889998 8899988543 58899999999888876
Q ss_pred HHHH
Q 033182 97 KLEK 100 (125)
Q Consensus 97 ~~~~ 100 (125)
...+
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 6543
No 385
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=51.31 E-value=1.2e+02 Score=24.34 Aligned_cols=49 Identities=20% Similarity=0.162 Sum_probs=44.3
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHH
Q 033182 17 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65 (125)
Q Consensus 17 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 65 (125)
.+.|..+.|..+.+++-...|.-+.++...-...+.-|+|+.|++.|+.
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence 3478999999999999999999999999999999999999999998433
No 386
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=50.79 E-value=56 Score=24.82 Aligned_cols=44 Identities=14% Similarity=0.006 Sum_probs=39.5
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhH
Q 033182 20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGI 63 (125)
Q Consensus 20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 63 (125)
+..-.|+..++.++..+|.|....+.+...|..+|-...|...+
T Consensus 197 ~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~ 240 (365)
T PF09797_consen 197 EYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHY 240 (365)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44677888899999999999999999999999999999998873
No 387
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.79 E-value=60 Score=23.30 Aligned_cols=45 Identities=18% Similarity=0.082 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCC------CChHHHHHHHHHHHHchhHHHHHHhHHHHH
Q 033182 23 EESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67 (125)
Q Consensus 23 ~~A~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 67 (125)
...+..+++|+..-. -.......+|.-|...|+|++|.+.++.++
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344555555544322 123456679999999999999999944443
No 388
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=50.78 E-value=1e+02 Score=23.10 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=39.5
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHH
Q 033182 18 KLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65 (125)
Q Consensus 18 ~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 65 (125)
..+++.+.++..++.+..+|-...+++..+.++.++| ++.+.+.|..
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~ 157 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRD 157 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHH
Confidence 4578899999999999999999999999999999999 4555555333
No 389
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=50.34 E-value=28 Score=16.27 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHhcC
Q 033182 7 ICHSNRGICFLK----LGKFEESIKECTKALELN 36 (125)
Q Consensus 7 ~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~ 36 (125)
.+.+++|.+|.. ..+...|+..++++...+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 356677777754 236778888887776543
No 390
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=50.22 E-value=1.4e+02 Score=24.46 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCC--CC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 4 LRSICHSNRGICFL-KLGKFEESIKECTKALELNP--TY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~l~p--~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
..+.+++.+|..++ ...+++.|..++++++.+.. +. ..+.+-++.++.+.+... |... +.++++.
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~-------l~~~I~~ 128 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKN-------LDKAIED 128 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHH-------HHHHHHH
Confidence 45677888999888 57889999999999987763 32 345566788888877777 8777 5555554
No 391
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.76 E-value=36 Score=24.62 Aligned_cols=37 Identities=19% Similarity=0.265 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHH---------HhcCHHHHHHHHHHHHhcCCCC
Q 033182 3 ELRSICHSNRGICFL---------KLGKFEESIKECTKALELNPTY 39 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~---------~~~~~~~A~~~~~~al~l~p~~ 39 (125)
+.++..|-..|..+. ..++...|+..+++|+.+||+.
T Consensus 166 ~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 166 EVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 456677777888774 4467889999999999999875
No 392
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=49.54 E-value=1.5e+02 Score=24.57 Aligned_cols=86 Identities=15% Similarity=0.114 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
-.++..+-..+.+.-++.-..-.|.+.+..+.+ --+++.+++||... .-+.-... |++.++.+-++...-.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~-kmal~el~q~y~en-~n~~l~~l-------Wer~ve~dfnDvv~~R 136 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGES-KMALLELLQCYKEN-GNEQLYSL-------WERLVEYDFNDVVIGR 136 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhcch-HHHHHHHHHHHHhc-CchhhHHH-------HHHHHHhcchhHHHHH
Confidence 344444444444444556666677777777654 45778999999877 44455555 8999999988888888
Q ss_pred HHHHHHHHHHHHHHH
Q 033182 86 TILRLQPLAEEKLEK 100 (125)
Q Consensus 86 ~l~~~~~~~~~~~~~ 100 (125)
.|.+.+..++.....
T Consensus 137 eLa~~yEkik~sk~a 151 (711)
T COG1747 137 ELADKYEKIKKSKAA 151 (711)
T ss_pred HHHHHHHHhchhhHH
Confidence 888888776654433
No 393
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.48 E-value=58 Score=22.97 Aligned_cols=50 Identities=8% Similarity=0.121 Sum_probs=35.4
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 12 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 12 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.-.+.++.|.|.+|.+.+++.+. +|+..+-..-+...-.....+..-++.
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqn 166 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQN 166 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHh
Confidence 34566789999999999999999 888877755555555554444444443
No 394
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=49.23 E-value=53 Score=23.75 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHH---------HchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 40 MKALIRRAEAHE---------KLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 40 ~~~~~~~~~~~~---------~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
++-|-..|..+. ..+....|... +++|+++||+. .+...+.++.+.+.
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~-------L~rA~~l~~k~-GVK~~i~~l~~~lr 225 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALAL-------LQRAFQLNDKC-GVKKDIERLERRLK 225 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHH-------HHHHHHhCCCC-ChHHHHHHHHHHHh
Confidence 344445555552 44677788888 99999999863 23444555555544
No 395
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=49.06 E-value=88 Score=25.04 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
+..+.|.|+-.++++++|+.+|+.++.++.+.+
T Consensus 24 ~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GI 56 (560)
T KOG2709|consen 24 ASVEQGLCYDEVNDWENALAMYEKGLNLIVEGI 56 (560)
T ss_pred HHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcC
Confidence 455677777778888888888777776666533
No 396
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=49.04 E-value=36 Score=30.56 Aligned_cols=73 Identities=22% Similarity=0.205 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHhcCHHHHHH------HHHH-HHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 8 CHSNRGICFLKLGKFEESIK------ECTK-ALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~------~~~~-al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
-....|..-+..|.|.+|.+ .+.. --.+.|..++.|..++..+..+|++++|+..=.++|++.++.+.+++-+
T Consensus 934 ~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~ 1013 (1236)
T KOG1839|consen 934 DSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN 1013 (1236)
T ss_pred hhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH
Confidence 34455666666777887766 5553 3345789999999999999999999999999889999999999988643
No 397
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=48.86 E-value=1.8e+02 Score=25.36 Aligned_cols=65 Identities=23% Similarity=0.138 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY-----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
..+-.-+|.+....|++++|+...+.++..=|.+ ..++...|.+..-.|++++|..+ ...+.++.
T Consensus 458 ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~-------~~~a~~~a 527 (894)
T COG2909 458 AEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALAL-------MQQAEQMA 527 (894)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHH-------HHHHHHHH
Confidence 3444556777778999999999999999887654 56888999999999999999999 77666663
No 398
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=48.62 E-value=32 Score=16.45 Aligned_cols=30 Identities=23% Similarity=0.243 Sum_probs=17.8
Q ss_pred HHHHHHH--HHHHHhc-----CHHHHHHHHHHHHhcC
Q 033182 7 ICHSNRG--ICFLKLG-----KFEESIKECTKALELN 36 (125)
Q Consensus 7 ~~~~~~~--~~~~~~~-----~~~~A~~~~~~al~l~ 36 (125)
.+.+++| .+|..-. +++.|+..++++...+
T Consensus 2 ~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 2 EAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 4556666 4444322 4677777777776543
No 399
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=48.47 E-value=1.3e+02 Score=23.41 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHH--HHhcC--CCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTK--ALELN--PTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~--al~l~--p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
|......+..+.-.+..|+|.+|-.++=. ++.-+ +++..+....-.+-.-..+|+-|.+.
T Consensus 126 ~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsalwGKlASEIL~qnWd~A~ed 189 (432)
T KOG2758|consen 126 PERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSALWGKLASEILTQNWDGALED 189 (432)
T ss_pred HHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45566778888888899999988765443 33333 44667777777777788899999998
No 400
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=48.42 E-value=1e+02 Score=22.22 Aligned_cols=63 Identities=8% Similarity=-0.063 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 7 ICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 7 ~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
....+++.+|.. ..+...|+..|. ...+..++.+.+++|..|.. ..++.+|..+ |+++.+...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~-------~~~Aa~~g~ 144 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKY-------YEKAAKLGN 144 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHH-------HHHHHHcCC
Confidence 355666767665 345788888888 44566778888999999987 5588888888 888877643
No 401
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=47.94 E-value=58 Score=23.13 Aligned_cols=51 Identities=10% Similarity=-0.028 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK 52 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~ 52 (125)
.|.....|+.+|..+...|+.-.|+-+|-+++.....++.+.-|+...+.+
T Consensus 12 ~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 12 LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp -TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 467788999999999999999999999999998876678888888888877
No 402
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=47.14 E-value=1.3e+02 Score=22.96 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+.+++..|..+...+++.+|+..++.+...++.+...-+.
T Consensus 255 a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~a~~~~~~ 294 (346)
T cd09240 255 ALAEYHQSLVAKAQKKFGEEIARLQHALELIKTAQSRAGE 294 (346)
T ss_pred HHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4567778888888889999999988888877777665443
No 403
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=46.92 E-value=64 Score=24.92 Aligned_cols=43 Identities=16% Similarity=-0.081 Sum_probs=34.3
Q ss_pred CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 37 PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
|.+++.|...+.--.+.+-|.+-... |.++++.+|.|.+.|..
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI-------~~~~l~khP~nvdlWI~ 146 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNI-------FAECLTKHPLNVDLWIY 146 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcCCCCceeeee
Confidence 67888888887776777766666666 99999999999887655
No 404
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=45.89 E-value=1.1e+02 Score=21.99 Aligned_cols=47 Identities=13% Similarity=-0.056 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch
Q 033182 5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 54 (125)
Q Consensus 5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 54 (125)
.+.+.+++|.+|.. ..++.+|..+|.++-..+. ..+.++++ ++...|
T Consensus 186 ~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 34567788888765 3478999999999999888 88888888 666555
No 405
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=44.94 E-value=60 Score=24.94 Aligned_cols=40 Identities=23% Similarity=0.180 Sum_probs=33.2
Q ss_pred ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 39 YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
.+.+++..|.-..+-|+.-+|+.. ++.|+++.|+-...+.
T Consensus 18 kA~~l~~~av~~Eq~G~l~dai~f-------YR~AlqI~~diEs~~r 57 (366)
T KOG2997|consen 18 KAIALYEKAVLKEQDGSLYDAINF-------YRDALQIVPDIESKYR 57 (366)
T ss_pred HHHHHHHHHHHHhhcCcHHHHHHH-------HHhhhcCCchHHHHHH
Confidence 356778888888899999999999 9999999988666555
No 406
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.57 E-value=67 Score=21.44 Aligned_cols=36 Identities=11% Similarity=0.003 Sum_probs=29.3
Q ss_pred HHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182 45 RRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI 87 (125)
Q Consensus 45 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l 87 (125)
.+|+.+...|+++++..+ +-.|+.+-|........+
T Consensus 86 ~lGE~L~~qg~~e~ga~h-------~~nAi~vcgqpaqLL~vl 121 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEH-------LANAIVVCGQPAQLLQVL 121 (143)
T ss_pred HhHHHHHHccCHHHHHHH-------HHHHHhhcCCHHHHHHHH
Confidence 489999999999999999 888888887765544333
No 407
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=43.99 E-value=86 Score=30.29 Aligned_cols=49 Identities=10% Similarity=0.140 Sum_probs=37.8
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 14 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
..+...|+|..|..+|+++++.+|+..+.+.+.-.+-+..+.+...+..
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~ 1505 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILH 1505 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhh
Confidence 3445578888888888888888888887777777777777777777665
No 408
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=43.65 E-value=1.7e+02 Score=23.45 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=46.7
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
.+...|..+...+.++.|+...+-.--+.++...|+..++... ++.+-+.+|.
T Consensus 243 adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~i-------lE~aWK~ePH 295 (531)
T COG3898 243 ADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKI-------LETAWKAEPH 295 (531)
T ss_pred CChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhH-------HHHHHhcCCC
Confidence 4578888889999999999999999999999999999999998 8888887775
No 409
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=42.72 E-value=58 Score=22.20 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNP 37 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 37 (125)
++.++.+++.++...|+.++|.....++..+-|
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 466788999999999999999999999999999
No 410
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=42.59 E-value=2.5e+02 Score=25.01 Aligned_cols=95 Identities=12% Similarity=0.056 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH----------HhcCCCC----------hHHHHHHHHHHHHchhHHHHHHhHHHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKA----------LELNPTY----------MKALIRRAEAHEKLEHFEEAIAGIQDLM 67 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a----------l~l~p~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 67 (125)
-|+|.+..+...++-+.|+++|+++ +.-+|.. ...|.--|+-+...|+.+.|+..|..+-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 4677787888888999999999885 3334543 3444556888899999999999966666
Q ss_pred HHHHH--------------HHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 68 IVMKK--------------ILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 68 ~~~~~--------------a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+-|.. .+..+.++..+-+.|++.+...++..++..
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence 65532 122335677777788888777776655544
No 411
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=42.36 E-value=87 Score=25.62 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
....+|.--...|+|..+... +.+++--+|++..++....++.++++-+.+...
T Consensus 454 rVl~la~ea~~kGdyrW~a~l-------ln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~A~ 507 (655)
T COG2015 454 RVLELAREAFDKGDYRWAAEL-------LNQAVFADPGNKAARELQADALEQLGYQAESAT 507 (655)
T ss_pred HHHHHHHHHHhcccchHHHHH-------HhhHHhcCCccHHHHHHHHhHHHHhhhhhccch
Confidence 345667777789999999999 999999999999999999999999987665544
No 412
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.75 E-value=1.6e+02 Score=26.70 Aligned_cols=61 Identities=16% Similarity=0.034 Sum_probs=49.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.+....+|.-++..+.+.+++++|+....++.-+. |+....+-+++......++...|...
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~ 1037 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKS 1037 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhh
Confidence 45667788899999999999999999888775442 45677888888888888888888887
No 413
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=41.17 E-value=1.8e+02 Score=23.84 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=41.3
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 28 ECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 28 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
.++.-++-+|++.-.|+.+-+-+..+|.+++-.+. +++...--|-.+.++...-+-..+.++.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~-------yeq~~~pfp~~~~aw~ly~s~ELA~~df 92 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREM-------YEQLSSPFPIMEHAWRLYMSGELARKDF 92 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHH-------HHHhcCCCccccHHHHHHhcchhhhhhH
Confidence 34555677788888888888888888888877777 7777766666555555444333333333
No 414
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=40.32 E-value=1.6e+02 Score=24.37 Aligned_cols=61 Identities=15% Similarity=0.122 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182 27 KECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLA 94 (125)
Q Consensus 27 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 94 (125)
.+..+.+..|..++-++-..+.--+++.+|.+|+++ |++.-+.+.-...+-..++.|--.+
T Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 823 (831)
T PRK15180 763 DYAKKLLVFDSENAYALKYAALNAMHLRDYTQALQY-------WQRLEKVNGPTEPVTRQISTCITAL 823 (831)
T ss_pred hhhhhheeeccchHHHHHHHHhhHhHHHHHHHHHHH-------HHHHHhccCCCcchHHHHHHHHHHH
Confidence 344556666788888877778888899999999999 9888887644444444555554433
No 415
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=40.11 E-value=80 Score=21.30 Aligned_cols=35 Identities=20% Similarity=0.133 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNP 37 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 37 (125)
+..+.++..+|.+|.+.|+..++.....+|.+.+-
T Consensus 117 ~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 117 EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 35688899999999999999999999988876553
No 416
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=37.68 E-value=84 Score=20.35 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=22.5
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182 11 NRGICFLKLGKFEESIKECTKALELNPTY 39 (125)
Q Consensus 11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 39 (125)
.+|..++..|++++|..+|-+|+..-|.-
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 57777888888988988888888887653
No 417
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=37.42 E-value=2.1e+02 Score=22.74 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHh
Q 033182 10 SNRGICFLKLGKFEESIKECTKALE 34 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~ 34 (125)
.+.|.-++..|+|++|+..|+.++.
T Consensus 208 Lk~gyk~~t~gKF~eA~~~Fr~iL~ 232 (422)
T PF06957_consen 208 LKEGYKLFTAGKFEEAIEIFRSILH 232 (422)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3456667778888888888888763
No 418
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.83 E-value=3.5e+02 Score=24.77 Aligned_cols=79 Identities=15% Similarity=0.124 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH------------------------------HHHHHHHchh
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR------------------------------RAEAHEKLEH 55 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~------------------------------~~~~~~~~~~ 55 (125)
.+-|..++......|+|..|....++| +..+.|-. +-.-|...|-
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGy 1294 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGY 1294 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCc
Confidence 344677888888999999999988877 33333333 3344555566
Q ss_pred HHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 033182 56 FEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEE 96 (125)
Q Consensus 56 ~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 96 (125)
|++-+.. ++.++-++..+-.....|+-++.+.+-
T Consensus 1295 FeElIsl-------~Ea~LGLERAHMgmfTELaiLYskykp 1328 (1666)
T KOG0985|consen 1295 FEELISL-------LEAGLGLERAHMGMFTELAILYSKYKP 1328 (1666)
T ss_pred HHHHHHH-------HHhhhchhHHHHHHHHHHHHHHHhcCH
Confidence 6666666 777777777776666667666655543
No 419
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=35.56 E-value=2.6e+02 Score=27.43 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
...+.+|.+.|......|+++.|....-.|.+.. -+.++..+|..+-.+|+-..|+.. ++..++.+
T Consensus 1667 ~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~-------Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1667 SRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSV-------LQEILSKN 1732 (2382)
T ss_pred chhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHH-------HHHHHHhh
Confidence 4457889999999999999999988888877766 678899999999999999999999 77776554
No 420
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.08 E-value=2.6e+02 Score=23.06 Aligned_cols=42 Identities=7% Similarity=0.103 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR 45 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~ 45 (125)
+..+-+++.+|+++.-+.+|..|...++...... ++..++|.
T Consensus 300 Q~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des-dWS~a~Y~ 341 (546)
T KOG3783|consen 300 QVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES-DWSHAFYT 341 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-hhhHHHHH
Confidence 4567788999999999999999988887766554 33444433
No 421
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=34.86 E-value=1.3e+02 Score=23.50 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA 47 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 47 (125)
++.-+|....+.|+.++|-..|++++.+.++..+..+-+.
T Consensus 367 ~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 367 YHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred cHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 4567899999999999999999999999998877655443
No 422
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=34.68 E-value=2.2e+02 Score=22.80 Aligned_cols=56 Identities=14% Similarity=0.024 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
..|.|+-.+.+-+|+|........++.+.- .-.++.....|.+...+++|+.|...
T Consensus 188 nm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~ 251 (466)
T KOG0686|consen 188 NMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKY 251 (466)
T ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666555555554441 01245667788888889999999988
No 423
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=34.16 E-value=1.3e+02 Score=20.30 Aligned_cols=36 Identities=14% Similarity=0.097 Sum_probs=29.2
Q ss_pred HHHHHHHHch-hHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182 45 RRAEAHEKLE-HFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI 87 (125)
Q Consensus 45 ~~~~~~~~~~-~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l 87 (125)
.+|+.+...| ++++|..+ |-.|+..-|.-.+....+
T Consensus 95 ~~GE~L~~~g~~~~ega~h-------f~nAl~Vc~qP~~LL~iy 131 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVH-------FYNALKVYPQPQQLLSIY 131 (148)
T ss_pred HHHHHHHhCCCchHHHHHH-------HHHHHHhCCCHHHHHHHH
Confidence 4899999999 99999999 889998888765544433
No 424
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=33.77 E-value=37 Score=27.04 Aligned_cols=24 Identities=17% Similarity=0.455 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHH
Q 033182 10 SNRGICFLKLGKFEESIKECTKAL 33 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al 33 (125)
+..|.+|+.+++|++|++.|..++
T Consensus 276 Y~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHH
No 425
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=33.74 E-value=1.8e+02 Score=23.08 Aligned_cols=28 Identities=21% Similarity=0.073 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKA 32 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a 32 (125)
....|-.+|...+.+|+++-|+.+|.++
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 4568999999999999999999988775
No 426
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=33.30 E-value=1.9e+02 Score=22.74 Aligned_cols=60 Identities=18% Similarity=0.062 Sum_probs=44.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhc--CCC--------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 12 RGICFLKLGKFEESIKECTKALEL--NPT--------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 12 ~~~~~~~~~~~~~A~~~~~~al~l--~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+-..|.+++++.-+...+. +.+. .|+ ....+|.+|.++....++.+|-.. ++.++..-|.
T Consensus 183 L~~iY~Rl~~~~l~~n~lk-a~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~-------L~~aFl~c~~ 252 (413)
T COG5600 183 LFQIYLRLGRFKLCENFLK-ASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLH-------LNEAFLQCPW 252 (413)
T ss_pred HHHHHHHhccHHHHHHHHH-hcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHH-------HHHHHHhChh
Confidence 4567788899887654443 3222 232 245789999999999999999999 8888887776
No 427
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.84 E-value=2.4e+02 Score=21.94 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 22 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
.+.|+....+++..| ..++|++|...|+-++..|.-+++.+.+++.+..
T Consensus 7 l~kaI~lv~kA~~eD---------------~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd 55 (439)
T KOG0739|consen 7 LQKAIDLVKKAIDED---------------NAKNYEEALRLYQNALEYFLHALKYEANNKKAKD 55 (439)
T ss_pred HHHHHHHHHHHhhhc---------------chhchHHHHHHHHHHHHHHHHHHHhhhcChhHHH
Confidence 345666666665444 2356677777777777779989888766654443
No 428
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.40 E-value=57 Score=26.06 Aligned_cols=63 Identities=16% Similarity=0.334 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------C-C---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELN--------P-T---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 72 (125)
-...+.|.||-+.+++++|+.+|++.+.+= | . ....|--. +.-.....++...+.+=+.|+++
T Consensus 23 ~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dA---caliQklkes~~~vr~Rl~vL~k 97 (560)
T KOG2709|consen 23 YASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDA---CALIQKLKESKSSVRHRLNVLKK 97 (560)
T ss_pred HHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHH---HHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999987652 1 1 12233222 22233445555556666666665
No 429
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=32.22 E-value=2.3e+02 Score=21.59 Aligned_cols=35 Identities=26% Similarity=0.159 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
.+++..|..+...+++.+|+..++.+...++.+..
T Consensus 245 ~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~ 279 (348)
T cd09242 245 LAAYYHALALEAAGKYGEAIAYLTQAESILKEANP 279 (348)
T ss_pred HHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 46667777777888999999998888888877775
No 430
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=32.13 E-value=3.6e+02 Score=23.86 Aligned_cols=82 Identities=13% Similarity=0.048 Sum_probs=56.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHch-------hHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 13 GICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLE-------HFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~-------~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
..++..-..|+.|+..|++.-.--|.- .++.++.|.++..+. .+++|+.. |+.... .|+-+-
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~ 553 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSE-------FSYLHG-GVGAPL 553 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHH-------HHHhcC-CCCCch
Confidence 455666778999999999999888854 568899999887553 35555555 654333 455555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
=+...+-+++.+++..+..+
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~ 573 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIK 573 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHH
Confidence 55566666777777776666
No 431
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=31.80 E-value=1.8e+02 Score=21.94 Aligned_cols=52 Identities=13% Similarity=-0.119 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
-.+|+-.-.++...++|++-..... . ...|-+|-....++.+.|+..+|..+
T Consensus 208 krfw~lki~aLa~~~~w~eL~~fa~-s----kKsPIGyepFv~~~~~~~~~~eA~~y 259 (319)
T PF04840_consen 208 KRFWWLKIKALAENKDWDELEKFAK-S----KKSPIGYEPFVEACLKYGNKKEASKY 259 (319)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHh-C----CCCCCChHHHHHHHHHCCCHHHHHHH
Confidence 3567778888889999987665432 1 34567888888889999999999888
No 432
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.66 E-value=3.8e+02 Score=27.56 Aligned_cols=49 Identities=24% Similarity=0.338 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHE 51 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 51 (125)
+-.++++.-+|..+.+.|++++|-..|..|++++-.-+++|..=|.-..
T Consensus 2809 ~q~aeff~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~ 2857 (3550)
T KOG0889|consen 2809 RQKAEFFTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLD 2857 (3550)
T ss_pred HHHHHHHHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999888888888776554
No 433
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=30.69 E-value=51 Score=21.68 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=14.0
Q ss_pred HhcCHHHHHHHHHHHHhcCCCChHH
Q 033182 18 KLGKFEESIKECTKALELNPTYMKA 42 (125)
Q Consensus 18 ~~~~~~~A~~~~~~al~l~p~~~~~ 42 (125)
..|+|+.|+...+-+++.+-.-+..
T Consensus 60 D~Gd~~~AL~~a~yAi~~~l~~P~~ 84 (132)
T PF05944_consen 60 DVGDFDGALDIAEYAIEHGLPMPDR 84 (132)
T ss_pred cccCHHHHHHHHHHHHHcCCCcccc
Confidence 4566666666666666665433333
No 434
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=30.28 E-value=2.5e+02 Score=21.45 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
+.+++..|......+++.+|+..++.|...+..+.+.-
T Consensus 247 A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~k~~ 284 (353)
T cd09246 247 AEALYRAAKDLHEKEDIGEEIARLRAASDALAEARKQA 284 (353)
T ss_pred HHHHHHHHHHhHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence 34677777888888899999998666666666665543
No 435
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=30.11 E-value=1.2e+02 Score=23.50 Aligned_cols=36 Identities=11% Similarity=-0.071 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY 39 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 39 (125)
-.+.+|..++...-..|.++..+..|++|+..+..-
T Consensus 138 K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 138 KLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred HHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
Confidence 356789999999999999999999999999998754
No 436
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.01 E-value=4e+02 Score=23.77 Aligned_cols=49 Identities=16% Similarity=0.191 Sum_probs=39.6
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 17 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 17 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
.+.|+.+.|++.+.+. +++..|.++|+.-+.+|+..-|.-. |++.-..+
T Consensus 654 Le~gnle~ale~akkl-----dd~d~w~rLge~Al~qgn~~IaEm~-------yQ~~knfe 702 (1202)
T KOG0292|consen 654 LECGNLEVALEAAKKL-----DDKDVWERLGEEALRQGNHQIAEMC-------YQRTKNFE 702 (1202)
T ss_pred hhcCCHHHHHHHHHhc-----CcHHHHHHHHHHHHHhcchHHHHHH-------HHHhhhhh
Confidence 3467888887766555 7889999999999999999999988 77766655
No 437
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.86 E-value=3.2e+02 Score=23.25 Aligned_cols=77 Identities=12% Similarity=0.020 Sum_probs=44.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHH
Q 033182 14 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE-FDPSNNQAKRTILRLQP 92 (125)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~-l~p~~~~~~~~l~~~~~ 92 (125)
.+..+.|+++.|.... ...++..=|-.+|.+.+..+++..|.++.+++.++-.-.+- -..++.+-...++...+
T Consensus 645 elal~lgrl~iA~~la-----~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLA-----VEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred hhhhhcCcHHHHHHHH-----HhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHH
Confidence 3344455555554422 23466778899999999999999999994444443111111 11345555555555554
Q ss_pred HHH
Q 033182 93 LAE 95 (125)
Q Consensus 93 ~~~ 95 (125)
+.+
T Consensus 720 ~~g 722 (794)
T KOG0276|consen 720 KQG 722 (794)
T ss_pred hhc
Confidence 444
No 438
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=29.84 E-value=2.2e+02 Score=21.04 Aligned_cols=36 Identities=8% Similarity=0.077 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNP 37 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p 37 (125)
..+.+..|.+.|..|.++.-.+.++..+-..++.|.
T Consensus 143 ~~Cs~E~f~k~g~~~~Em~~~Er~lD~~IdlLk~d~ 178 (274)
T PF12455_consen 143 SRCSVEQFLKMGGLYPEMEPVERALDSWIDLLKKDQ 178 (274)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345677788888888888888888888888888774
No 439
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=29.68 E-value=79 Score=15.49 Aligned_cols=18 Identities=17% Similarity=0.307 Sum_probs=13.3
Q ss_pred HHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 56 FEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 56 ~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++.|... |++.+...|+.
T Consensus 3 ~dRAR~I-------yeR~v~~hp~~ 20 (32)
T PF02184_consen 3 FDRARSI-------YERFVLVHPEV 20 (32)
T ss_pred HHHHHHH-------HHHHHHhCCCc
Confidence 4555555 99999988874
No 440
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=29.01 E-value=96 Score=16.23 Aligned_cols=33 Identities=12% Similarity=-0.010 Sum_probs=28.8
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHHchhHHHHH
Q 033182 28 ECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60 (125)
Q Consensus 28 ~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~ 60 (125)
.+..+|..+|++...++-.+..+...|+-+.|.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~rae 36 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARAE 36 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHh
Confidence 477889999999999999999999999986653
No 441
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=28.59 E-value=1.2e+02 Score=21.15 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 39 YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
.+++++..|+|+..+|+...|+.. +..+-+
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~-------lN~vR~ 161 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEY-------LNQVRK 161 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHH
Confidence 478999999999999999999988 666554
No 442
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=28.41 E-value=3.3e+02 Score=22.24 Aligned_cols=58 Identities=21% Similarity=0.160 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---------------------------------------cCCCChHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALE---------------------------------------LNPTYMKALIR 45 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---------------------------------------l~p~~~~~~~~ 45 (125)
+--+.+.-|....+++++.+|...|.+... ..|..+...+.
T Consensus 5 ~~~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF 84 (549)
T PF07079_consen 5 RQYLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLF 84 (549)
T ss_pred HHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334555666777777777777777666542 22555566677
Q ss_pred HHHHHHHchhHHHHHHh
Q 033182 46 RAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 46 ~~~~~~~~~~~~~A~~~ 62 (125)
.|...++.+.|..|++.
T Consensus 85 ~~L~~Y~~k~~~kal~~ 101 (549)
T PF07079_consen 85 KALVAYKQKEYRKALQA 101 (549)
T ss_pred HHHHHHHhhhHHHHHHH
Confidence 88888899999999887
No 443
>PF06069 PerC: PerC transcriptional activator; InterPro: IPR024684 This family includes PerC, which is a transcriptional activator of EaeA/BfpA expression in enteropathogenic bacteria []. It also includes a number of uncharacterised proteins, such as Orf40 from bacteriophage SfV.
Probab=28.31 E-value=1.5e+02 Score=18.21 Aligned_cols=68 Identities=12% Similarity=0.163 Sum_probs=38.6
Q ss_pred HHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhh---hhhhhhHHHH
Q 033182 45 RRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLE-KMKEEMIGKL---GNDFLLRFHF 119 (125)
Q Consensus 45 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~ 119 (125)
..|..+...|.|-.|..- |..++....++.+-......-...+..... ......|..+ .+.+...+|+
T Consensus 5 ~~Ae~LE~kGl~RRAA~r-------W~evm~~~~~~~eRe~~~~RR~~Cl~kakR~p~~~~~f~~l~~Aa~~T~~~MGi 76 (90)
T PF06069_consen 5 KKAEELEAKGLWRRAATR-------WLEVMDLAETDKEREWIAQRREYCLRKAKRPPEPPDNFGDLRKAADRTQKRMGI 76 (90)
T ss_pred HHHHHHHHcccHHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHHHhcccCCCChhHHHHHHHHHHHHHHHcCC
Confidence 467888899999999988 777777766655533333332222221111 1113344444 4566666666
No 444
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=28.16 E-value=3.4e+02 Score=22.30 Aligned_cols=46 Identities=4% Similarity=-0.166 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA 47 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 47 (125)
+|.+...|+.+-..+-.++.+++-.+.|++...--|-.+.+|--.-
T Consensus 38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~ 83 (660)
T COG5107 38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYM 83 (660)
T ss_pred CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHh
Confidence 4778888999999999999999999999998877776666654433
No 445
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=28.01 E-value=2.6e+02 Score=20.91 Aligned_cols=37 Identities=19% Similarity=0.180 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
+.+++..|..+...+++.+|+..++.|...++.+...
T Consensus 251 a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~~~ 287 (345)
T cd09034 251 ALAYYYHGLKLDEANKIGEAIARLQAALELLKESERL 287 (345)
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777888999999977777777777664
No 446
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=27.96 E-value=2.8e+02 Score=21.19 Aligned_cols=37 Identities=19% Similarity=0.150 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
+.+++..|......+++.+++..++.++..++.+...
T Consensus 237 A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a~~~ 273 (355)
T cd09241 237 AAAHYRMALVALEKSKYGEEVARLRVALAACKEALKE 273 (355)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777888999999988888877777664
No 447
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=27.61 E-value=3.6e+02 Score=22.48 Aligned_cols=59 Identities=20% Similarity=0.227 Sum_probs=44.6
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH--------------------chhHHHHHHhHHHHHHHHHHH
Q 033182 14 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK--------------------LEHFEEAIAGIQDLMIVMKKI 73 (125)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~--------------------~~~~~~A~~~~~~~~~~~~~a 73 (125)
.-|....+|.+|++...-.++.|..+.++.-++-.-++. -.++-++... |+..
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~d-------Fek~ 285 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALND-------FEKL 285 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHH-------HHHH
Confidence 344456789999999999999999999988887777666 4455566666 7777
Q ss_pred HhhCCC
Q 033182 74 LEFDPS 79 (125)
Q Consensus 74 ~~l~p~ 79 (125)
+.++-+
T Consensus 286 m~f~eG 291 (711)
T COG1747 286 MHFDEG 291 (711)
T ss_pred heeccC
Confidence 777654
No 448
>PF08771 Rapamycin_bind: Rapamycin binding domain; InterPro: IPR009076 Rapamycin and FK506 are potent immunosuppressive agents that bind to the FK506-binding protein (FKBP12), inhibiting its peptidyl-prolyl isomerase activity. The rapamycin-FKBP12 complex can then bind to and inhibit the FKBP12-rapamycin-associated protein (FRAP) in humans and RAFT1 in rats, causing cell-cycle arrest []. The FK506-FKBP12 complex cannot bind FRAP, but can bind to and inhibit calcineurin. Rapamycin is able to bind to two proteins, FKBP12 and FRAP, by simultaneously occupying two hydrophobic binding pockets, thereby linking these two proteins together to form a dimer []. The structure of the FKBP12-rapamycin-binding domain of FRAP consists of a core bundle of four helices arranged up-and-down in a left-handed twist. FRAP has been shown to interact in vitro with CLIP-170, a protein involved in microtubule organisation and function []. FRAP is thought to act as a kinase to phosphorylate CLIP-170, thereby regulating its binding to microtubules. FRAP is also thought to cooperate with p85/p110 phosphatidylinositol 3-kinase (PI3K) to induce the activation of the serine/threonine kinase p70 S6 kinase (p70S6K), which in turn phosphorylates the 40S ribosomal protein S6, thereby altering the translation of ribosomal proteins and translation elongation factors [].; GO: 0016772 transferase activity, transferring phosphorus-containing groups; PDB: 2NPU_A 2RSE_B 4FAP_B 1AUE_A 2GAQ_A 1FAP_B 2FAP_B 3FAP_B 1NSG_B.
Probab=27.34 E-value=1.6e+02 Score=18.21 Aligned_cols=53 Identities=13% Similarity=-0.018 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 10 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
...+..|+..++.+..+..+......-..-|+.......+..--.+..+|..+
T Consensus 18 e~As~~y~~~~n~~~m~~~L~pLh~~l~k~PeT~~E~~F~~~fg~~L~~A~~~ 70 (100)
T PF08771_consen 18 EEASRLYFGENNVEKMFKILEPLHEMLEKGPETLREVSFAQAFGRDLQEAREW 70 (100)
T ss_dssp HHHHHHHHTTT-HHHHHHHHHHHHHHHHHS-SSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555666777777777776665544322233334444444444555666666
No 449
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.33 E-value=1.2e+02 Score=16.85 Aligned_cols=34 Identities=15% Similarity=0.053 Sum_probs=22.6
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 29 CTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 29 ~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
+-..++.-..+..-+...-..+..+|++++|.++
T Consensus 12 ~~~~lR~~RHD~~NhLqvI~gllqlg~~~~a~eY 45 (62)
T PF14689_consen 12 LIDSLRAQRHDFLNHLQVIYGLLQLGKYEEAKEY 45 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3334444445566667777788889999999888
No 450
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=26.57 E-value=3.8e+02 Score=22.30 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=36.6
Q ss_pred hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 19 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 19 ~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.|+.-.|-+....+++.-|..+.--...+.+...+|.|+.+.+.
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~ 345 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQD 345 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHH
Confidence 46677777777778888888888888889999999999999887
No 451
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=26.57 E-value=1.5e+02 Score=21.71 Aligned_cols=40 Identities=13% Similarity=0.029 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA 42 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 42 (125)
|.+..+...+-..++-.|+|+.|...++-+-.+.|.+...
T Consensus 32 Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 32 PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 4555566667777888999999999999999999987543
No 452
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=26.18 E-value=1.8e+02 Score=18.57 Aligned_cols=39 Identities=15% Similarity=-0.015 Sum_probs=30.3
Q ss_pred HHHHHHHHHH--hcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 24 ESIKECTKAL--ELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 24 ~A~~~~~~al--~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.+...|.... .++-..+..|-..|..+...|++++|...
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I 121 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEI 121 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4555555544 45678899999999999999999999999
No 453
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.58 E-value=2.2e+02 Score=19.23 Aligned_cols=24 Identities=17% Similarity=0.218 Sum_probs=18.7
Q ss_pred HHchhHHHHHHhHHHHHHHHHHHH
Q 033182 51 EKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 51 ~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
...|+|+.++..|.++..++....
T Consensus 97 i~~~dy~~~i~dY~kak~l~~~~~ 120 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLFEKYK 120 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhh
Confidence 478999999999777777766544
No 454
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=25.31 E-value=2.4e+02 Score=24.01 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=37.3
Q ss_pred hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 19 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 19 ~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
...|.-|+..+.+. +-+-..+|..-|.++.+.+++..|..- |++++++.
T Consensus 569 ~ErYqlaV~mckKc---~iD~f~aW~AWGlA~Lk~e~~aaAR~K-------Fkqafklk 617 (1141)
T KOG1811|consen 569 AERYQLAVEMCKKC---GIDTFGAWHAWGLACLKAENLAAAREK-------FKQAFKLK 617 (1141)
T ss_pred HHHHHHHHHHHhhc---CCCcccHHHHHHHHHHHhhhHHHHHHH-------HHHHhCCC
Confidence 34555555555432 334567899999999999999999999 99999975
No 455
>KOG1766 consensus Enhancer of rudimentary [General function prediction only]
Probab=25.01 E-value=1.5e+02 Score=18.47 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=31.4
Q ss_pred hhHHHHHHhHHHHHHHHHHHHh-hCCCcHHHHHHHHHHHHHHHHH
Q 033182 54 EHFEEAIAGIQDLMIVMKKILE-FDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 54 ~~~~~A~~~~~~~~~~~~~a~~-l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
++|+.--++.+-.|-+|++-++ .+|+.+.+-.-++.+..-++.-
T Consensus 20 ~DYesv~e~megiCk~yEe~Lkk~nPs~~~ITYDIsqlfeFiD~L 64 (104)
T KOG1766|consen 20 GDYESVTECMEGICKMYEEHLKKKNPSAPPITYDISQLFEFIDDL 64 (104)
T ss_pred cchHhHHHHHHHHHHHHHHHHHhcCCCCCCcceeHHHHHHHHHHH
Confidence 4555555566777888988776 5898888777777777766543
No 456
>KOG2880 consensus SMAD6 interacting protein AMSH, contains JAB/MPN/Mov34 domain [Signal transduction mechanisms]
Probab=24.61 E-value=3.5e+02 Score=21.24 Aligned_cols=52 Identities=10% Similarity=0.023 Sum_probs=35.2
Q ss_pred HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
.+.|.+|..-|+++.|.-.|-+=+-+|-+-+.-+|+...+.....++.+.+.
T Consensus 39 ~rmA~VY~~EgN~enafvLy~ry~tLfiEkipkHrDy~s~k~ek~d~~~klk 90 (424)
T KOG2880|consen 39 LRMANVYLEEGNVENAFVLYLRYITLFIEKIPKHRDYRSVKPEKEDIRKKLK 90 (424)
T ss_pred HHHHHHHHhcCCcchhhhHHHHHHHHHHHhcccCcchhhhchhHHHHHHHHH
Confidence 4577888888888888887555555555545555666666666666666665
No 457
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.54 E-value=4.1e+02 Score=22.03 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=26.1
Q ss_pred HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 43 LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 43 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
.+.++.+|..+++|.+|+..|+++..-.+.+...
T Consensus 425 C~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~ 458 (593)
T KOG2460|consen 425 CFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSE 458 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4668899999999999999966666655555543
No 458
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=23.96 E-value=1.5e+02 Score=22.92 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKA 42 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~ 42 (125)
.++...+.-|....+.|+.-+|+..|+.|+++.|+---.
T Consensus 17 kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~ 55 (366)
T KOG2997|consen 17 KKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESK 55 (366)
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHH
Confidence 356678888888888999999999999999999874333
No 459
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=23.94 E-value=1.7e+02 Score=20.33 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
.+.+|..+|.|..+.|+..+|+....++-..
T Consensus 132 ~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~R 162 (266)
T PF07980_consen 132 LAEVYLIYAEALARLGNTAEALEYLNQVRKR 162 (266)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4688999999999999999999988886543
No 460
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=22.78 E-value=2.4e+02 Score=18.75 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=21.1
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Q 033182 20 GKFEESIKECTKALELNPTYMKALIRRAEAHE 51 (125)
Q Consensus 20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 51 (125)
-+.+.|...|..++...|++..++..+-...-
T Consensus 90 le~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 90 LEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp S-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 34577778888888888888887776665543
No 461
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=22.69 E-value=1.9e+02 Score=18.03 Aligned_cols=39 Identities=18% Similarity=0.199 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+...+..|..+...|+.+.|=-.+-+.+.++ .-+.-+|+
T Consensus 38 a~~l~~~A~~~~~egd~E~AYvl~~R~~~L~-~ki~~Hpd 76 (115)
T PF08969_consen 38 ANKLLREAEEYRQEGDEEQAYVLYMRYLTLV-EKIPKHPD 76 (115)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCHCCSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HHhhcCcc
Confidence 3455667788888899999988877777776 55566675
No 462
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=22.46 E-value=1.1e+02 Score=18.24 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALE 34 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~ 34 (125)
+.....-....||+++|.+..+++..
T Consensus 40 ~s~kv~~~~~~Gd~~~A~~aS~~Ak~ 65 (82)
T PF04505_consen 40 YSSKVRSRYAAGDYEGARRASRKAKK 65 (82)
T ss_pred echhhHHHHHCCCHHHHHHHHHHhHH
Confidence 33445556668899999887777653
No 463
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=21.90 E-value=2.1e+02 Score=20.83 Aligned_cols=25 Identities=20% Similarity=-0.142 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHchhHHHHHHh
Q 033182 38 TYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.++..|...|..+.+.+++.+|..+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~H 112 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERH 112 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHH
Confidence 5688999999999999999999987
No 464
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=21.88 E-value=4.7e+02 Score=21.79 Aligned_cols=49 Identities=18% Similarity=0.051 Sum_probs=25.2
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 14 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.-....|+++.....|++++--=..+.+.|++.+.-....|..+-|...
T Consensus 305 df~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~ 353 (577)
T KOG1258|consen 305 DFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNV 353 (577)
T ss_pred hhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence 3334455555555555555544444555555555555555555555444
No 465
>PF05131 Pep3_Vps18: Pep3/Vps18/deep orange family; InterPro: IPR007810 This region is found in a number of proteins identified as being involved in Golgi function and vacuolar sorting. The molecular function of this region is unknown. Proteins containing this domain also contain a C-terminal ring finger domain.
Probab=21.61 E-value=52 Score=21.95 Aligned_cols=18 Identities=28% Similarity=0.724 Sum_probs=14.2
Q ss_pred HHHHHhcCHHHHHHHHHH
Q 033182 14 ICFLKLGKFEESIKECTK 31 (125)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~ 31 (125)
..|+++|+|++|++.++.
T Consensus 111 k~yl~~~~fd~Al~~~~~ 128 (147)
T PF05131_consen 111 KIYLDKGDFDEALQYCKT 128 (147)
T ss_pred HHHHhcCcHHHHHHHccC
Confidence 357788999999887765
No 466
>PF13310 Virulence_RhuM: Virulence protein RhuM family
Probab=21.46 E-value=2e+02 Score=21.31 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 033182 62 GIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 62 ~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 100 (125)
.|+++.+||.-+...+|+.+.+...-..++.++.-....
T Consensus 96 fYqki~di~a~s~DYd~~~~~t~~Ffa~vQNKlh~Av~g 134 (260)
T PF13310_consen 96 FYQKITDIYATSIDYDPKSEETKQFFATVQNKLHYAVTG 134 (260)
T ss_pred HHHHHHHHHhhhhccCcCCHHHHHHHHHHHHHHHHHHhc
Confidence 489999999988999999999999999888877654433
No 467
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=21.23 E-value=3.7e+02 Score=20.34 Aligned_cols=43 Identities=19% Similarity=0.214 Sum_probs=34.0
Q ss_pred HHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 60 IAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 60 ~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
...+..+..|++.++..+|.|.....++-+++..++-...+..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~ 238 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALE 238 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 3345555666999999999999999999999998886665544
No 468
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=20.75 E-value=1.3e+02 Score=14.86 Aligned_cols=30 Identities=17% Similarity=0.112 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHhcC---HHHHHHHHHHHHhcCC
Q 033182 8 CHSNRGICFLKLGK---FEESIKECTKALELNP 37 (125)
Q Consensus 8 ~~~~~~~~~~~~~~---~~~A~~~~~~al~l~p 37 (125)
.-+|.|+++++.+. -.+++..++..++-+|
T Consensus 3 t~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 3 TQFNYAWGLVKSNNREDQQEGIALLEELYRDEP 35 (35)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS-
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence 45677888887654 4567777766655443
No 469
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=20.74 E-value=4.3e+02 Score=20.85 Aligned_cols=46 Identities=22% Similarity=0.331 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hHHHHHHHHHHHHchhH
Q 033182 11 NRGICFLKLGKFEESIKECTKALELNPTY--MKALIRRAEAHEKLEHF 56 (125)
Q Consensus 11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~--~~~~~~~~~~~~~~~~~ 56 (125)
.++.|..++|+..+|++.++...+--|-- ...+-|+-+++..+.-|
T Consensus 280 RLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 280 RLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888888888777666621 23444455555444444
No 470
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=20.62 E-value=6e+02 Score=22.53 Aligned_cols=65 Identities=22% Similarity=0.321 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHH------HHhcC----CCC-hHHHHHHHHHHHHchhHHHHHHh-HHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTK------ALELN----PTY-MKALIRRAEAHEKLEHFEEAIAG-IQDLMIV 69 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~------al~l~----p~~-~~~~~~~~~~~~~~~~~~~A~~~-~~~~~~~ 69 (125)
++..|-..|..|-+..+|+.|+++|.+ ++++. |.. .+.--.-|.-+...|+++.|+.. |+.-|.+
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLI 736 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH
Confidence 456777888889899999999988875 44442 322 22333457778889999999987 4444433
No 471
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=20.44 E-value=2.3e+02 Score=17.51 Aligned_cols=34 Identities=9% Similarity=0.022 Sum_probs=26.2
Q ss_pred ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 39 YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
........|..-...|+|..|.+. ..++-+..+.
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~-------~~~a~~~~~~ 91 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKL-------LAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCC
Confidence 345567788888899999999999 8888665333
No 472
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=20.12 E-value=5.2e+02 Score=21.63 Aligned_cols=68 Identities=7% Similarity=0.127 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcC-----CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 033182 24 ESIKECTKALELN-----PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQP 92 (125)
Q Consensus 24 ~A~~~~~~al~l~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~ 92 (125)
.++..|.+++... -.+.-.|-.+|..+++.++|.+|+...-.+-.|.+ -.....++.+++..+.++..
T Consensus 297 ~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~-~YnY~reDeEiYKEfleIAn 369 (618)
T PF05053_consen 297 TPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIR-KYNYSREDEEIYKEFLEIAN 369 (618)
T ss_dssp -HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT-TSB--GGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHH-HcccCccHHHHHHHHHHHHH
Confidence 3556666666543 34466777889999999999999998333333321 11123456777777666653
No 473
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.11 E-value=1.5e+02 Score=25.83 Aligned_cols=47 Identities=15% Similarity=0.260 Sum_probs=35.4
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHchhHHHHHHhH
Q 033182 13 GICFLKLGKFEESIKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIAGI 63 (125)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~A~~~~ 63 (125)
-..|...|+|+.|+..+... |+.. ..+...|..+...++|..|.+.|
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~----p~~le~Vl~~qAdf~f~~k~y~~AA~~y 412 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR----PDALETVLLKQADFLFQDKEYLRAAEIY 412 (911)
T ss_pred HHHHHhcchHHHHHHhccCC----HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45788999999988766543 4443 36677888899999999998873
Done!