Query 033182
Match_columns 125
No_of_seqs 110 out of 1521
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 17:50:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 2E-17 6.8E-22 106.3 13.7 95 1-102 8-102 (126)
2 4gco_A Protein STI-1; structur 99.7 6.1E-17 2.1E-21 104.0 9.4 83 2-91 43-125 (126)
3 3gyz_A Chaperone protein IPGC; 99.7 2E-16 6.9E-21 105.1 11.1 95 1-102 31-125 (151)
4 3rkv_A Putative peptidylprolyl 99.7 8E-16 2.7E-20 101.5 10.7 92 2-100 59-151 (162)
5 4ga2_A E3 SUMO-protein ligase 99.6 1.2E-15 4E-20 100.4 9.3 91 2-99 27-117 (150)
6 2hr2_A Hypothetical protein; a 99.6 5E-16 1.7E-20 104.3 6.7 91 3-100 54-155 (159)
7 3upv_A Heat shock protein STI1 99.6 3.9E-14 1.3E-18 89.4 14.1 93 3-102 1-93 (126)
8 2vgx_A Chaperone SYCD; alterna 99.6 1.2E-14 4.2E-19 95.4 11.4 95 1-102 16-110 (148)
9 2xcb_A PCRH, regulatory protei 99.6 1.7E-14 5.8E-19 93.5 11.5 95 1-102 13-107 (142)
10 1p5q_A FKBP52, FK506-binding p 99.6 6.4E-14 2.2E-18 103.1 14.2 100 3-109 193-295 (336)
11 3upv_A Heat shock protein STI1 99.6 1.2E-14 4.2E-19 91.8 9.0 85 2-93 34-124 (126)
12 3urz_A Uncharacterized protein 99.6 1.5E-13 5.2E-18 94.3 15.2 89 2-97 34-138 (208)
13 4gcn_A Protein STI-1; structur 99.6 2.3E-14 8E-19 91.8 9.8 93 3-102 5-104 (127)
14 1hxi_A PEX5, peroxisome target 99.6 1.4E-13 4.7E-18 87.5 12.8 89 7-102 18-106 (121)
15 2pl2_A Hypothetical conserved 99.5 2.8E-13 9.5E-18 93.6 14.6 93 3-102 2-105 (217)
16 3sz7_A HSC70 cochaperone (SGT) 99.5 1.7E-13 5.8E-18 90.4 12.8 93 3-102 8-100 (164)
17 2hr2_A Hypothetical protein; a 99.5 9.2E-14 3.1E-18 93.3 11.6 98 5-102 10-123 (159)
18 2l6j_A TPR repeat-containing p 99.5 2E-13 6.8E-18 83.6 11.8 84 5-95 3-92 (111)
19 3gyz_A Chaperone protein IPGC; 99.5 6.1E-14 2.1E-18 93.0 10.1 73 2-81 66-138 (151)
20 1na3_A Designed protein CTPR2; 99.5 2E-13 6.9E-18 80.9 11.4 83 4-93 7-89 (91)
21 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 6.9E-14 2.4E-18 106.9 11.6 93 3-102 314-406 (457)
22 3sz7_A HSC70 cochaperone (SGT) 99.5 5.7E-14 1.9E-18 92.7 9.5 89 2-97 41-131 (164)
23 3vtx_A MAMA; tetratricopeptide 99.5 3.6E-13 1.2E-17 89.7 13.5 90 5-101 4-93 (184)
24 2xcb_A PCRH, regulatory protei 99.5 5.7E-14 1.9E-18 91.0 9.3 88 2-96 48-135 (142)
25 2vgx_A Chaperone SYCD; alterna 99.5 4.9E-14 1.7E-18 92.5 9.1 87 2-95 51-137 (148)
26 4ga2_A E3 SUMO-protein ligase 99.5 1.3E-14 4.4E-19 95.4 6.1 85 2-92 61-145 (150)
27 4gyw_A UDP-N-acetylglucosamine 99.5 1.6E-13 5.5E-18 110.6 13.6 94 2-102 5-98 (723)
28 1ihg_A Cyclophilin 40; ppiase 99.5 3.1E-13 1.1E-17 101.0 13.7 94 2-102 269-362 (370)
29 2pl2_A Hypothetical conserved 99.5 2.9E-13 9.8E-18 93.5 12.6 94 2-102 35-139 (217)
30 1zu2_A Mitochondrial import re 99.5 7.5E-14 2.6E-18 93.6 9.2 86 2-94 32-138 (158)
31 3q49_B STIP1 homology and U bo 99.5 2.1E-13 7.1E-18 86.6 10.8 94 2-102 5-98 (137)
32 3k9i_A BH0479 protein; putativ 99.5 2.8E-13 9.7E-18 84.9 10.6 79 2-87 23-101 (117)
33 2fbn_A 70 kDa peptidylprolyl i 99.5 4.4E-13 1.5E-17 90.9 12.3 89 6-101 88-176 (198)
34 4gyw_A UDP-N-acetylglucosamine 99.5 2.8E-13 9.6E-18 109.2 11.8 94 2-102 39-132 (723)
35 3ma5_A Tetratricopeptide repea 99.5 4.7E-13 1.6E-17 82.2 9.9 82 2-90 3-86 (100)
36 2kck_A TPR repeat; tetratricop 99.5 1E-13 3.6E-18 84.3 6.2 95 1-102 1-98 (112)
37 1elw_A TPR1-domain of HOP; HOP 99.5 3.8E-12 1.3E-16 77.7 13.2 91 5-102 3-93 (118)
38 3q49_B STIP1 homology and U bo 99.5 3.7E-13 1.3E-17 85.4 8.8 89 2-97 39-132 (137)
39 3rkv_A Putative peptidylprolyl 99.5 1.7E-12 5.8E-17 85.3 12.2 91 5-102 10-118 (162)
40 2h6f_A Protein farnesyltransfe 99.4 3.1E-13 1.1E-17 101.6 9.2 91 2-99 127-218 (382)
41 2lni_A Stress-induced-phosphop 99.4 3.2E-12 1.1E-16 79.9 12.2 93 3-102 13-105 (133)
42 1hxi_A PEX5, peroxisome target 99.4 4E-13 1.4E-17 85.3 7.8 74 2-82 47-120 (121)
43 4gcn_A Protein STI-1; structur 99.4 4.2E-13 1.4E-17 85.8 7.9 80 2-89 38-124 (127)
44 3urz_A Uncharacterized protein 99.4 2.8E-12 9.6E-17 88.0 12.5 90 6-102 4-109 (208)
45 2vyi_A SGTA protein; chaperone 99.4 1.1E-11 3.7E-16 76.9 14.1 94 2-102 8-101 (131)
46 1elw_A TPR1-domain of HOP; HOP 99.4 2.8E-12 9.6E-17 78.3 11.1 82 3-91 35-116 (118)
47 2kat_A Uncharacterized protein 99.4 2.5E-12 8.6E-17 80.0 11.1 89 2-97 15-105 (115)
48 4i17_A Hypothetical protein; T 99.4 2.2E-12 7.7E-17 88.6 11.6 92 4-102 40-138 (228)
49 2xev_A YBGF; tetratricopeptide 99.4 5.6E-12 1.9E-16 79.1 12.4 89 7-102 3-97 (129)
50 1p5q_A FKBP52, FK506-binding p 99.4 6.1E-12 2.1E-16 92.5 13.6 94 2-102 143-251 (336)
51 2vyi_A SGTA protein; chaperone 99.4 3.9E-12 1.3E-16 78.9 10.7 86 3-95 43-128 (131)
52 2lni_A Stress-induced-phosphop 99.4 1.9E-12 6.5E-17 81.0 9.2 86 2-94 46-131 (133)
53 1na0_A Designed protein CTPR3; 99.4 1.6E-11 5.6E-16 75.5 13.2 90 6-102 9-98 (125)
54 2h6f_A Protein farnesyltransfe 99.4 3.5E-12 1.2E-16 95.9 11.9 95 1-102 92-187 (382)
55 1a17_A Serine/threonine protei 99.4 1.3E-11 4.5E-16 80.0 12.9 80 4-90 45-124 (166)
56 2dba_A Smooth muscle cell asso 99.4 9.6E-12 3.3E-16 79.2 11.7 78 6-90 65-142 (148)
57 3vtx_A MAMA; tetratricopeptide 99.4 7.1E-12 2.4E-16 83.3 11.1 93 3-102 70-162 (184)
58 4i17_A Hypothetical protein; T 99.4 4.4E-12 1.5E-16 87.1 10.4 92 4-102 5-97 (228)
59 2kc7_A BFR218_protein; tetratr 99.4 1E-11 3.5E-16 75.0 10.7 69 9-84 3-72 (99)
60 2dba_A Smooth muscle cell asso 99.4 1.9E-11 6.5E-16 77.8 12.4 93 3-102 25-120 (148)
61 2fbn_A 70 kDa peptidylprolyl i 99.4 4.7E-11 1.6E-15 80.7 14.4 93 3-102 35-143 (198)
62 1a17_A Serine/threonine protei 99.4 1.9E-11 6.4E-16 79.2 11.9 92 4-102 11-102 (166)
63 2if4_A ATFKBP42; FKBP-like, al 99.4 1.3E-12 4.3E-17 96.3 6.9 84 7-97 231-314 (338)
64 2c2l_A CHIP, carboxy terminus 99.4 6.9E-12 2.3E-16 90.0 10.4 92 4-102 2-93 (281)
65 2xev_A YBGF; tetratricopeptide 99.3 1.8E-11 6.1E-16 76.7 11.1 80 6-92 39-121 (129)
66 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.6E-11 5.4E-16 93.8 12.7 93 3-102 265-372 (457)
67 3uq3_A Heat shock protein STI1 99.3 1.9E-11 6.6E-16 84.0 12.0 94 2-102 135-228 (258)
68 1xnf_A Lipoprotein NLPI; TPR, 99.3 1.5E-11 5.1E-16 85.6 11.5 93 3-102 40-132 (275)
69 1hh8_A P67PHOX, NCF-2, neutrop 99.3 1.4E-11 4.7E-16 83.5 10.8 91 5-102 36-142 (213)
70 1na0_A Designed protein CTPR3; 99.3 2.4E-11 8.3E-16 74.7 10.9 84 3-93 40-123 (125)
71 1elr_A TPR2A-domain of HOP; HO 99.3 1.4E-11 4.9E-16 76.4 9.4 92 4-102 2-100 (131)
72 2e2e_A Formate-dependent nitri 99.3 1.2E-11 4E-16 82.0 9.4 93 3-102 41-136 (177)
73 1elr_A TPR2A-domain of HOP; HO 99.3 1.6E-11 5.4E-16 76.3 9.4 87 3-97 35-128 (131)
74 4abn_A Tetratricopeptide repea 99.3 2.8E-11 9.6E-16 92.7 11.4 94 2-102 209-313 (474)
75 2vsy_A XCC0866; transferase, g 99.3 5.5E-11 1.9E-15 92.2 13.0 94 2-102 19-112 (568)
76 4abn_A Tetratricopeptide repea 99.3 9.2E-11 3.1E-15 89.8 13.8 93 2-102 133-242 (474)
77 3qky_A Outer membrane assembly 99.3 1.2E-10 4.1E-15 81.6 13.2 94 2-102 11-118 (261)
78 1wao_1 Serine/threonine protei 99.3 1.4E-11 4.7E-16 94.8 8.6 83 2-91 36-118 (477)
79 3as5_A MAMA; tetratricopeptide 99.3 2E-10 6.8E-15 74.9 12.8 87 5-98 41-127 (186)
80 1fch_A Peroxisomal targeting s 99.3 1.5E-10 5.2E-15 83.7 13.3 91 5-102 216-306 (368)
81 4eqf_A PEX5-related protein; a 99.3 3.5E-11 1.2E-15 87.6 9.9 91 5-102 212-302 (365)
82 1w3b_A UDP-N-acetylglucosamine 99.3 5.6E-11 1.9E-15 87.2 11.1 90 3-99 234-323 (388)
83 2pzi_A Probable serine/threoni 99.3 1.2E-11 4.3E-16 98.6 8.1 89 3-98 430-518 (681)
84 1w3b_A UDP-N-acetylglucosamine 99.3 4.1E-11 1.4E-15 88.0 10.2 92 3-101 64-155 (388)
85 2vq2_A PILW, putative fimbrial 99.2 2E-10 6.9E-15 77.3 12.4 94 2-102 4-98 (225)
86 2pzi_A Probable serine/threoni 99.2 9.9E-12 3.4E-16 99.1 6.7 93 2-102 463-555 (681)
87 3as5_A MAMA; tetratricopeptide 99.2 1.3E-10 4.5E-15 75.8 11.1 93 3-102 73-165 (186)
88 3ieg_A DNAJ homolog subfamily 99.2 2.3E-10 7.7E-15 81.8 13.0 85 6-97 272-356 (359)
89 2q7f_A YRRB protein; TPR, prot 99.2 2.8E-10 9.6E-15 77.7 12.9 91 3-100 54-144 (243)
90 2fo7_A Synthetic consensus TPR 99.2 3.8E-10 1.3E-14 69.7 12.3 87 7-100 2-88 (136)
91 2fo7_A Synthetic consensus TPR 99.2 1.5E-10 5.2E-15 71.6 10.3 92 3-101 32-123 (136)
92 2vsy_A XCC0866; transferase, g 99.2 1E-10 3.4E-15 90.8 11.5 94 2-102 53-149 (568)
93 3qou_A Protein YBBN; thioredox 99.2 5E-10 1.7E-14 80.4 13.8 99 4-102 115-240 (287)
94 3ieg_A DNAJ homolog subfamily 99.2 2.5E-10 8.6E-15 81.6 12.1 91 5-102 2-92 (359)
95 2q7f_A YRRB protein; TPR, prot 99.2 4.5E-10 1.5E-14 76.7 12.6 93 3-102 88-180 (243)
96 1ihg_A Cyclophilin 40; ppiase 99.2 1.9E-10 6.6E-15 85.9 11.6 91 5-102 222-328 (370)
97 2e2e_A Formate-dependent nitri 99.2 1.4E-10 4.8E-15 76.7 9.5 83 2-91 74-159 (177)
98 3uq3_A Heat shock protein STI1 99.2 4.7E-10 1.6E-14 77.0 12.5 90 6-102 79-194 (258)
99 3k9i_A BH0479 protein; putativ 99.2 2.1E-11 7E-16 76.3 5.0 78 18-102 2-82 (117)
100 1fch_A Peroxisomal targeting s 99.2 6.5E-11 2.2E-15 85.7 8.2 93 3-102 248-351 (368)
101 3fp2_A TPR repeat-containing p 99.2 1.2E-10 4.1E-15 88.2 9.9 92 4-102 23-114 (537)
102 2ho1_A Type 4 fimbrial biogene 99.2 4.1E-10 1.4E-14 77.7 11.8 90 6-102 37-126 (252)
103 2c2l_A CHIP, carboxy terminus 99.2 1.1E-10 3.7E-15 83.7 9.2 72 2-80 34-105 (281)
104 1zu2_A Mitochondrial import re 99.2 5.9E-10 2E-14 74.6 11.9 72 17-95 13-94 (158)
105 3cv0_A Peroxisome targeting si 99.2 9E-10 3.1E-14 78.0 13.6 93 3-102 169-261 (327)
106 3qky_A Outer membrane assembly 99.2 6.6E-10 2.3E-14 77.8 12.6 84 4-94 87-198 (261)
107 2y4t_A DNAJ homolog subfamily 99.2 3.2E-10 1.1E-14 84.2 11.6 94 2-102 22-115 (450)
108 1wao_1 Serine/threonine protei 99.2 3.8E-11 1.3E-15 92.3 6.6 93 3-102 3-95 (477)
109 4eqf_A PEX5-related protein; a 99.2 3E-10 1E-14 82.6 11.0 90 6-102 65-154 (365)
110 2kck_A TPR repeat; tetratricop 99.2 8.7E-11 3E-15 71.1 6.8 71 3-80 37-110 (112)
111 3hym_B Cell division cycle pro 99.2 4.5E-10 1.5E-14 79.7 11.4 91 3-100 87-178 (330)
112 3u4t_A TPR repeat-containing p 99.2 4.6E-10 1.6E-14 78.1 11.1 80 6-92 74-154 (272)
113 2ho1_A Type 4 fimbrial biogene 99.2 6.2E-10 2.1E-14 76.8 11.6 89 4-99 139-227 (252)
114 3hym_B Cell division cycle pro 99.1 3.7E-10 1.3E-14 80.1 10.5 94 2-102 121-214 (330)
115 2v5f_A Prolyl 4-hydroxylase su 99.1 1.1E-09 3.6E-14 67.8 11.3 83 5-94 4-93 (104)
116 1xnf_A Lipoprotein NLPI; TPR, 99.1 6.7E-10 2.3E-14 77.2 11.4 81 3-90 74-154 (275)
117 1pc2_A Mitochondria fission pr 99.1 3.1E-10 1.1E-14 75.5 9.1 85 4-95 30-119 (152)
118 2vq2_A PILW, putative fimbrial 99.1 1.2E-09 4.2E-14 73.4 12.3 87 5-98 41-130 (225)
119 3cv0_A Peroxisome targeting si 99.1 3.9E-10 1.3E-14 79.9 10.0 93 3-102 203-307 (327)
120 2if4_A ATFKBP42; FKBP-like, al 99.1 1E-10 3.4E-15 86.1 6.9 93 3-102 176-285 (338)
121 3bee_A Putative YFRE protein; 99.1 5.2E-10 1.8E-14 68.4 9.0 74 2-82 2-78 (93)
122 2gw1_A Mitochondrial precursor 99.1 7.8E-10 2.7E-14 83.0 11.8 92 3-102 3-94 (514)
123 2r5s_A Uncharacterized protein 99.1 1.2E-10 4E-15 77.6 6.5 100 3-102 3-129 (176)
124 1hh8_A P67PHOX, NCF-2, neutrop 99.1 6.7E-10 2.3E-14 75.0 10.1 91 2-102 2-92 (213)
125 2y4t_A DNAJ homolog subfamily 99.1 1.5E-09 5.1E-14 80.6 12.6 84 6-96 295-378 (450)
126 2yhc_A BAMD, UPF0169 lipoprote 99.1 2E-09 6.7E-14 74.3 12.2 82 5-93 3-90 (225)
127 2r5s_A Uncharacterized protein 99.1 9.6E-10 3.3E-14 73.1 10.1 92 2-100 36-163 (176)
128 3mkr_A Coatomer subunit epsilo 99.1 5.9E-10 2E-14 80.4 9.6 75 3-84 197-272 (291)
129 3u4t_A TPR repeat-containing p 99.1 2.7E-10 9.3E-15 79.3 7.5 92 3-102 34-129 (272)
130 3fp2_A TPR repeat-containing p 99.1 8.6E-10 2.9E-14 83.5 9.7 93 3-102 307-399 (537)
131 3qou_A Protein YBBN; thioredox 99.0 1E-09 3.5E-14 78.7 9.1 90 2-98 147-272 (287)
132 2yhc_A BAMD, UPF0169 lipoprote 99.0 8.1E-09 2.8E-13 71.2 13.1 74 5-85 40-134 (225)
133 3edt_B KLC 2, kinesin light ch 99.0 1.1E-09 3.9E-14 75.7 8.5 93 3-102 82-190 (283)
134 2xpi_A Anaphase-promoting comp 99.0 3.4E-09 1.2E-13 81.4 11.6 93 3-102 472-571 (597)
135 2kat_A Uncharacterized protein 99.0 4.6E-09 1.6E-13 64.9 9.3 72 24-102 3-74 (115)
136 2ond_A Cleavage stimulation fa 99.0 5.4E-09 1.9E-13 75.2 10.9 92 2-100 46-153 (308)
137 2xpi_A Anaphase-promoting comp 99.0 8.1E-09 2.8E-13 79.3 12.3 92 4-102 371-462 (597)
138 3edt_B KLC 2, kinesin light ch 99.0 6.6E-09 2.3E-13 71.8 10.4 100 3-102 40-148 (283)
139 2ond_A Cleavage stimulation fa 98.9 2.4E-08 8.3E-13 71.8 12.3 80 2-88 95-175 (308)
140 3mkr_A Coatomer subunit epsilo 98.9 2.7E-08 9.1E-13 71.6 12.4 74 19-99 179-252 (291)
141 1qqe_A Vesicular transport pro 98.9 4.2E-09 1.4E-13 75.5 7.9 91 5-102 76-179 (292)
142 1qqe_A Vesicular transport pro 98.9 7.2E-09 2.5E-13 74.2 9.0 89 6-101 117-219 (292)
143 2gw1_A Mitochondrial precursor 98.9 3.9E-09 1.3E-13 79.2 7.7 94 2-102 300-393 (514)
144 4g1t_A Interferon-induced prot 98.9 2.8E-08 9.6E-13 74.3 11.9 86 3-95 91-186 (472)
145 3ulq_A Response regulator aspa 98.9 1.4E-08 4.6E-13 74.7 9.1 93 3-102 181-285 (383)
146 3nf1_A KLC 1, kinesin light ch 98.8 2E-08 6.8E-13 70.6 8.6 66 3-68 150-223 (311)
147 3n71_A Histone lysine methyltr 98.8 4.7E-08 1.6E-12 75.7 11.1 96 3-100 348-454 (490)
148 3nf1_A KLC 1, kinesin light ch 98.8 1.7E-08 5.7E-13 71.0 7.8 93 3-102 108-216 (311)
149 2l6j_A TPR repeat-containing p 98.8 1.6E-09 5.5E-14 65.8 1.3 61 2-62 34-100 (111)
150 4a1s_A PINS, partner of inscut 98.8 1.6E-07 5.4E-12 68.9 12.0 93 3-102 45-147 (411)
151 1ouv_A Conserved hypothetical 98.7 9.5E-08 3.3E-12 66.9 10.3 80 3-93 3-86 (273)
152 3gw4_A Uncharacterized protein 98.7 4.5E-08 1.5E-12 65.1 8.2 92 4-102 24-128 (203)
153 3u3w_A Transcriptional activat 98.7 2.6E-08 9E-13 71.0 7.4 84 6-96 155-251 (293)
154 3qww_A SET and MYND domain-con 98.7 1E-07 3.5E-12 72.9 10.8 83 3-87 337-427 (433)
155 3ulq_A Response regulator aspa 98.7 6.4E-08 2.2E-12 71.1 9.4 93 3-102 140-245 (383)
156 2qfc_A PLCR protein; TPR, HTH, 98.7 4.2E-08 1.4E-12 70.0 8.0 89 5-100 154-255 (293)
157 3ro3_A PINS homolog, G-protein 98.7 7.1E-08 2.4E-12 61.1 8.2 56 7-62 50-111 (164)
158 3ro3_A PINS homolog, G-protein 98.7 4.9E-08 1.7E-12 61.8 7.5 93 3-102 6-110 (164)
159 4g1t_A Interferon-induced prot 98.7 1.1E-07 3.8E-12 71.0 10.4 86 2-94 205-294 (472)
160 1dce_A Protein (RAB geranylger 98.7 7.6E-08 2.6E-12 75.6 9.7 87 2-95 59-157 (567)
161 1dce_A Protein (RAB geranylger 98.7 1.4E-07 4.6E-12 74.2 11.0 86 2-94 103-191 (567)
162 3q15_A PSP28, response regulat 98.7 6E-08 2E-12 71.3 8.4 92 4-102 180-282 (378)
163 3dra_A Protein farnesyltransfe 98.7 1.1E-07 3.7E-12 69.7 9.4 88 2-96 140-235 (306)
164 3qwp_A SET and MYND domain-con 98.7 3E-07 1E-11 70.1 12.1 86 3-90 326-419 (429)
165 4a1s_A PINS, partner of inscut 98.7 9.7E-08 3.3E-12 70.1 9.0 85 5-96 85-181 (411)
166 3ma5_A Tetratricopeptide repea 98.7 5.8E-08 2E-12 59.0 6.3 61 35-102 2-62 (100)
167 1nzn_A CGI-135 protein, fissio 98.7 2.9E-07 9.8E-12 59.2 9.7 84 5-95 34-122 (126)
168 4f3v_A ESX-1 secretion system 98.7 2.9E-07 9.9E-12 66.8 10.7 76 6-89 171-249 (282)
169 3gw4_A Uncharacterized protein 98.7 7.3E-08 2.5E-12 64.1 7.0 93 3-102 63-168 (203)
170 3sf4_A G-protein-signaling mod 98.7 1.2E-07 4E-12 68.9 8.6 91 5-102 226-328 (406)
171 3sf4_A G-protein-signaling mod 98.6 6.3E-08 2.2E-12 70.4 7.1 93 3-102 184-288 (406)
172 3q15_A PSP28, response regulat 98.6 2.8E-07 9.7E-12 67.7 10.6 68 4-78 220-292 (378)
173 3dra_A Protein farnesyltransfe 98.6 1.2E-07 4.2E-12 69.4 8.4 90 1-97 62-160 (306)
174 3dss_A Geranylgeranyl transfer 98.6 1.9E-06 6.6E-11 63.7 14.8 86 2-94 104-192 (331)
175 3ro2_A PINS homolog, G-protein 98.6 2.3E-07 7.8E-12 65.2 9.4 98 4-102 3-104 (338)
176 2kc7_A BFR218_protein; tetratr 98.6 2.1E-08 7.2E-13 60.1 3.3 64 3-81 31-95 (99)
177 2ooe_A Cleavage stimulation fa 98.6 5.8E-07 2E-11 68.9 11.9 92 2-100 268-375 (530)
178 2ifu_A Gamma-SNAP; membrane fu 98.6 1E-07 3.5E-12 68.6 7.1 65 6-78 116-186 (307)
179 3dss_A Geranylgeranyl transfer 98.6 4.9E-07 1.7E-11 66.9 10.5 83 2-91 140-237 (331)
180 3rjv_A Putative SEL1 repeat pr 98.6 2.5E-07 8.6E-12 63.3 8.3 82 4-93 83-174 (212)
181 3ro2_A PINS homolog, G-protein 98.6 2.3E-07 7.8E-12 65.2 8.1 85 5-96 42-138 (338)
182 1ouv_A Conserved hypothetical 98.6 5.7E-07 2E-11 62.9 10.0 78 5-93 37-122 (273)
183 3u3w_A Transcriptional activat 98.6 2.3E-07 7.7E-12 66.1 7.8 69 3-71 193-268 (293)
184 2qfc_A PLCR protein; TPR, HTH, 98.6 1.4E-06 4.7E-11 62.0 11.7 90 6-102 115-217 (293)
185 3o48_A Mitochondria fission 1 98.5 3.3E-06 1.1E-10 54.7 11.9 84 6-96 40-127 (134)
186 3q7a_A Farnesyltransferase alp 98.5 7E-07 2.4E-11 66.5 9.9 90 2-98 84-176 (349)
187 1na3_A Designed protein CTPR2; 98.5 2.2E-07 7.7E-12 54.1 5.8 52 3-54 40-91 (91)
188 2ifu_A Gamma-SNAP; membrane fu 98.5 1.8E-07 6E-12 67.4 6.0 90 5-102 75-176 (307)
189 3q7a_A Farnesyltransferase alp 98.5 6.7E-07 2.3E-11 66.7 9.1 88 2-96 155-257 (349)
190 1y8m_A FIS1; mitochondria, unk 98.5 5.7E-06 1.9E-10 54.2 11.6 82 6-94 39-124 (144)
191 2ooe_A Cleavage stimulation fa 98.4 3.9E-06 1.3E-10 64.3 12.3 77 2-85 317-394 (530)
192 4f3v_A ESX-1 secretion system 98.4 1.9E-06 6.5E-11 62.5 9.1 92 3-102 133-229 (282)
193 3rjv_A Putative SEL1 repeat pr 98.4 2.3E-06 7.8E-11 58.5 8.6 76 5-92 17-96 (212)
194 3ly7_A Transcriptional activat 98.4 2.9E-06 9.9E-11 63.7 9.5 78 2-88 273-350 (372)
195 1hz4_A MALT regulatory protein 98.3 6.8E-06 2.3E-10 59.7 10.5 90 6-102 93-195 (373)
196 1klx_A Cysteine rich protein B 98.3 8.2E-06 2.8E-10 52.4 9.1 72 5-87 56-135 (138)
197 2xm6_A Protein corresponding t 98.2 7.8E-06 2.7E-10 62.0 9.8 80 5-93 362-452 (490)
198 3n71_A Histone lysine methyltr 98.2 4.3E-06 1.5E-10 64.8 8.0 93 10-102 313-414 (490)
199 1hz4_A MALT regulatory protein 98.1 1E-05 3.5E-10 58.8 7.4 91 5-102 52-156 (373)
200 3qww_A SET and MYND domain-con 98.1 8E-06 2.7E-10 62.4 6.5 85 18-102 310-403 (433)
201 3u64_A Protein TP_0956; tetrat 98.0 1.1E-05 3.8E-10 58.8 6.6 69 5-80 198-273 (301)
202 3e4b_A ALGK; tetratricopeptide 98.0 1.7E-05 5.7E-10 60.2 7.3 76 5-90 175-257 (452)
203 3qwp_A SET and MYND domain-con 98.0 3.4E-05 1.2E-09 58.7 8.2 91 12-102 293-392 (429)
204 3e4b_A ALGK; tetratricopeptide 97.9 7E-05 2.4E-09 56.8 8.7 76 5-93 247-330 (452)
205 2xm6_A Protein corresponding t 97.9 0.00032 1.1E-08 53.1 12.2 78 5-93 38-123 (490)
206 1klx_A Cysteine rich protein B 97.9 9.1E-05 3.1E-09 47.4 7.9 71 12-93 31-105 (138)
207 4b4t_Q 26S proteasome regulato 97.8 4.4E-05 1.5E-09 56.3 6.5 67 4-77 133-205 (434)
208 3mv2_B Coatomer subunit epsilo 97.8 0.00029 9.9E-09 51.6 10.5 78 6-90 100-183 (310)
209 3bee_A Putative YFRE protein; 97.8 0.00011 3.6E-09 44.4 6.8 60 36-102 2-64 (93)
210 1xi4_A Clathrin heavy chain; a 97.7 0.00017 5.7E-09 62.2 9.2 63 5-79 1104-1166(1630)
211 1b89_A Protein (clathrin heavy 97.7 0.00033 1.1E-08 53.7 10.1 79 7-97 149-257 (449)
212 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00021 7.2E-09 43.5 7.2 44 4-47 44-87 (104)
213 3u64_A Protein TP_0956; tetrat 97.7 0.00042 1.4E-08 50.5 9.6 66 21-93 178-251 (301)
214 3mv2_B Coatomer subunit epsilo 97.6 0.00035 1.2E-08 51.2 8.3 69 6-86 214-292 (310)
215 1pc2_A Mitochondria fission pr 97.6 0.00035 1.2E-08 46.2 7.3 46 4-49 69-114 (152)
216 3ly7_A Transcriptional activat 97.5 0.0015 5.1E-08 49.0 10.9 86 9-102 199-331 (372)
217 3ffl_A Anaphase-promoting comp 97.5 0.00095 3.2E-08 44.7 8.5 80 5-92 62-166 (167)
218 1xi4_A Clathrin heavy chain; a 97.4 0.001 3.4E-08 57.6 10.4 85 6-97 1221-1330(1630)
219 1b89_A Protein (clathrin heavy 97.4 0.00013 4.4E-09 56.0 4.1 73 6-98 122-194 (449)
220 2ff4_A Probable regulatory pro 97.3 0.0022 7.5E-08 48.0 10.1 78 3-80 168-245 (388)
221 3ffl_A Anaphase-promoting comp 97.2 0.0011 3.8E-08 44.4 6.1 95 8-102 22-143 (167)
222 4b4t_Q 26S proteasome regulato 97.0 0.0025 8.6E-08 46.7 7.5 87 8-101 97-195 (434)
223 4gns_B Protein CSD3, chitin bi 96.9 0.004 1.4E-07 50.6 8.6 55 8-62 339-393 (754)
224 1ya0_A SMG-7 transcript varian 96.9 0.014 4.8E-07 45.3 11.0 81 7-94 153-233 (497)
225 1nzn_A CGI-135 protein, fissio 96.9 0.0061 2.1E-07 38.9 7.4 46 4-49 72-117 (126)
226 1zbp_A Hypothetical protein VP 96.8 0.019 6.6E-07 41.2 10.2 67 15-88 6-72 (273)
227 3o48_A Mitochondria fission 1 96.5 0.016 5.3E-07 37.4 7.5 46 4-49 76-121 (134)
228 4e6h_A MRNA 3'-END-processing 96.4 0.02 6.8E-07 46.0 9.3 67 3-69 340-407 (679)
229 1y8m_A FIS1; mitochondria, unk 96.3 0.014 4.6E-07 38.1 6.2 46 4-49 75-120 (144)
230 4e6h_A MRNA 3'-END-processing 95.9 0.039 1.3E-06 44.3 8.6 78 2-86 62-144 (679)
231 4h7y_A Dual specificity protei 95.6 0.11 3.6E-06 34.4 8.1 69 8-84 63-131 (161)
232 2crb_A Nuclear receptor bindin 94.7 0.25 8.7E-06 29.7 7.2 44 40-84 15-58 (97)
233 4g26_A Pentatricopeptide repea 94.4 0.77 2.6E-05 35.3 11.4 89 5-101 104-195 (501)
234 2uy1_A Cleavage stimulation fa 94.3 0.21 7.2E-06 38.3 8.1 59 23-89 196-254 (493)
235 2uy1_A Cleavage stimulation fa 93.6 1.5 5.1E-05 33.5 11.6 77 6-90 286-363 (493)
236 2w2u_A Hypothetical P60 katani 93.4 0.66 2.3E-05 27.1 7.9 40 42-81 21-60 (83)
237 4h7y_A Dual specificity protei 93.3 0.41 1.4E-05 31.6 6.8 88 1-96 8-109 (161)
238 1wfd_A Hypothetical protein 15 92.6 0.95 3.2E-05 27.0 8.8 41 42-82 17-57 (93)
239 2v6y_A AAA family ATPase, P60 92.5 0.92 3.1E-05 26.4 8.1 40 43-82 14-53 (83)
240 2cpt_A SKD1 protein, vacuolar 92.0 1.4 4.7E-05 27.5 10.1 42 44-85 22-63 (117)
241 4a5x_A MITD1, MIT domain-conta 91.8 1.2 4E-05 26.2 8.8 41 42-82 18-58 (86)
242 2v6x_A Vacuolar protein sortin 90.8 1.5 5E-05 25.5 8.8 40 43-82 16-55 (85)
243 3kae_A CDC27, possible protein 90.3 3.1 0.0001 28.3 10.5 70 7-83 63-150 (242)
244 4b4t_S RPN3, 26S proteasome re 89.3 0.92 3.1E-05 35.4 6.2 70 4-80 229-303 (523)
245 4g26_A Pentatricopeptide repea 88.6 3.3 0.00011 31.7 9.0 77 5-89 139-218 (501)
246 2ff4_A Probable regulatory pro 86.0 8.6 0.00029 28.4 11.3 84 11-101 120-225 (388)
247 3t5x_A PCI domain-containing p 84.7 4.3 0.00015 27.4 7.0 39 3-41 11-49 (203)
248 3mkq_B Coatomer subunit alpha; 84.7 6.8 0.00023 26.1 8.5 46 14-64 13-58 (177)
249 2cfu_A SDSA1; SDS-hydrolase, l 82.8 4.1 0.00014 32.5 7.0 51 9-59 452-502 (658)
250 3mkq_A Coatomer beta'-subunit; 81.9 9.4 0.00032 29.9 8.8 44 17-65 663-706 (814)
251 3txn_A 26S proteasome regulato 81.8 7.6 0.00026 29.1 7.8 61 9-69 102-168 (394)
252 3mkq_A Coatomer beta'-subunit; 80.0 8.1 0.00028 30.3 7.8 55 6-60 681-743 (814)
253 4b4t_R RPN7, 26S proteasome re 79.6 3.6 0.00012 30.9 5.5 55 8-62 133-190 (429)
254 2crb_A Nuclear receptor bindin 79.3 4.5 0.00015 24.2 4.7 28 6-33 15-42 (97)
255 2cfu_A SDSA1; SDS-hydrolase, l 77.9 9.5 0.00032 30.4 7.6 53 41-100 450-502 (658)
256 4gns_B Protein CSD3, chitin bi 76.7 3.7 0.00013 33.5 5.0 54 42-102 339-392 (754)
257 3spa_A Mtrpol, DNA-directed RN 75.6 38 0.0013 29.0 10.9 79 8-94 129-213 (1134)
258 1ya0_A SMG-7 transcript varian 75.1 6.8 0.00023 30.3 5.9 49 42-97 154-202 (497)
259 3ax2_A Mitochondrial import re 74.7 9.4 0.00032 21.6 5.4 38 44-88 21-58 (73)
260 2dl1_A Spartin; SPG20, MIT, st 74.0 13 0.00045 23.0 7.2 61 20-95 17-81 (116)
261 3spa_A Mtrpol, DNA-directed RN 72.4 24 0.00082 30.2 8.8 65 5-76 164-230 (1134)
262 3mkq_B Coatomer subunit alpha; 71.3 20 0.00067 23.8 7.4 27 6-32 34-60 (177)
263 1zbp_A Hypothetical protein VP 70.2 14 0.00048 26.4 6.1 42 2-43 27-68 (273)
264 4a5x_A MITD1, MIT domain-conta 67.2 14 0.00048 21.4 4.9 32 4-35 14-45 (86)
265 1wy6_A Hypothetical protein ST 65.2 26 0.00088 22.9 7.3 52 17-75 102-153 (172)
266 1om2_A Protein (mitochondrial 61.3 15 0.00053 21.9 4.2 34 44-84 24-57 (95)
267 3t5v_B Nuclear mRNA export pro 60.1 12 0.00042 28.6 4.5 64 10-80 180-254 (455)
268 2w2u_A Hypothetical P60 katani 60.0 20 0.00068 20.6 4.5 29 6-34 19-47 (83)
269 3ax2_A Mitochondrial import re 57.2 22 0.00077 20.0 4.3 30 11-40 22-51 (73)
270 1qsa_A Protein (soluble lytic 57.2 38 0.0013 26.8 7.1 53 16-75 295-347 (618)
271 2v6y_A AAA family ATPase, P60 56.6 24 0.00083 20.1 4.5 31 5-35 10-40 (83)
272 3t5x_A PCI domain-containing p 54.5 27 0.00091 23.4 5.1 34 40-80 14-47 (203)
273 2cpt_A SKD1 protein, vacuolar 52.9 27 0.00092 21.4 4.5 30 5-34 17-46 (117)
274 4fhn_B Nucleoporin NUP120; pro 52.2 27 0.00091 29.6 5.7 68 7-81 843-934 (1139)
275 2yhe_A SEC-alkyl sulfatase; hy 57.3 3 0.0001 33.4 0.0 52 10-61 465-516 (668)
276 3txn_A 26S proteasome regulato 51.7 72 0.0025 23.8 7.9 64 4-74 137-208 (394)
277 1wfd_A Hypothetical protein 15 51.6 31 0.0011 20.1 4.5 30 6-35 15-44 (93)
278 4gq2_M Nucleoporin NUP120; bet 51.6 55 0.0019 27.2 7.4 69 8-83 842-934 (950)
279 3bu8_A Telomeric repeat-bindin 48.6 23 0.00078 24.6 3.9 38 47-91 121-158 (235)
280 1qsa_A Protein (soluble lytic 48.0 84 0.0029 24.9 7.7 72 22-101 268-339 (618)
281 4fhn_B Nucleoporin NUP120; pro 46.4 77 0.0026 26.8 7.6 58 5-62 898-960 (1139)
282 3t5v_B Nuclear mRNA export pro 45.7 53 0.0018 25.1 6.0 37 3-39 217-254 (455)
283 2ymb_A MITD1, MIT domain-conta 44.8 4.6 0.00016 28.6 0.0 40 42-81 25-64 (257)
284 3kae_A CDC27, possible protein 44.7 71 0.0024 21.7 8.6 79 12-102 39-135 (242)
285 4b4t_R RPN7, 26S proteasome re 44.4 79 0.0027 23.4 6.8 65 4-75 166-236 (429)
286 4b4t_S RPN3, 26S proteasome re 42.1 1.2E+02 0.0042 23.6 8.7 36 4-39 268-303 (523)
287 2yhe_A SEC-alkyl sulfatase; hy 47.5 5.6 0.00019 31.9 0.0 53 41-100 462-514 (668)
288 4gq2_M Nucleoporin NUP120; bet 41.3 76 0.0026 26.4 6.7 51 13-74 817-867 (950)
289 4a1g_A Mitotic checkpoint seri 40.9 71 0.0024 20.6 6.9 30 7-36 102-131 (152)
290 3myv_A SUSD superfamily protei 40.6 74 0.0025 23.8 6.1 41 22-62 164-212 (454)
291 3eab_A Spastin; spastin, MIT, 40.0 56 0.0019 19.2 6.9 60 20-91 11-71 (89)
292 3bqo_A Telomeric repeat-bindin 39.5 18 0.00062 24.7 2.3 38 46-90 123-160 (211)
293 2ijq_A Hypothetical protein; s 39.4 77 0.0026 20.6 8.0 59 10-75 36-103 (161)
294 2npu_A FKBP12-rapamycin comple 39.1 70 0.0024 20.0 6.0 79 10-95 44-124 (126)
295 3ph0_C ASCG; type III secretio 38.8 47 0.0016 17.9 6.8 53 8-60 8-60 (61)
296 3c3r_A Programmed cell death 6 38.8 1.1E+02 0.0039 22.4 7.3 37 41-77 276-312 (380)
297 2vkj_A TM1634; membrane protei 35.2 71 0.0024 18.9 6.1 49 38-93 51-102 (106)
298 3lew_A SUSD-like carbohydrate 34.0 1.3E+02 0.0044 22.8 6.6 48 22-76 174-232 (495)
299 1wy6_A Hypothetical protein ST 33.8 75 0.0026 20.7 4.4 34 5-38 124-157 (172)
300 3kez_A Putative sugar binding 33.7 1.3E+02 0.0044 22.5 6.5 41 22-62 170-218 (461)
301 3esl_A Checkpoint serine/threo 33.5 1.1E+02 0.0038 20.7 6.8 46 22-67 95-142 (202)
302 4aez_C MAD3, mitotic spindle c 33.3 1.2E+02 0.004 20.9 6.7 31 36-66 146-176 (223)
303 3mcx_A SUSD superfamily protei 33.3 1.5E+02 0.005 22.2 6.8 48 22-76 176-231 (477)
304 4b4t_P 26S proteasome regulato 32.4 1.6E+02 0.0053 22.0 9.3 65 4-75 175-246 (445)
305 4aez_C MAD3, mitotic spindle c 32.3 1.2E+02 0.0042 20.8 7.4 34 5-38 149-182 (223)
306 4b4t_P 26S proteasome regulato 29.7 1.7E+02 0.006 21.7 12.3 59 4-62 135-199 (445)
307 3rau_A Tyrosine-protein phosph 29.3 1.7E+02 0.0057 21.4 10.2 39 40-78 252-290 (363)
308 3r9m_A BRO1 domain-containing 28.8 1.2E+02 0.004 22.3 5.4 37 40-76 253-289 (376)
309 2zan_A Vacuolar protein sortin 28.3 12 0.00042 28.1 0.0 30 48-77 19-48 (444)
310 4a1g_A Mitotic checkpoint seri 27.2 1.3E+02 0.0043 19.3 6.9 48 25-79 84-133 (152)
311 3esl_A Checkpoint serine/threo 27.1 1.5E+02 0.005 20.1 8.8 34 5-38 114-147 (202)
312 3snx_A SUSD homolog, putative 27.0 1.5E+02 0.005 22.3 5.8 30 39-75 190-219 (460)
313 3bu8_A Telomeric repeat-bindin 25.1 1.1E+02 0.0037 21.3 4.2 49 14-62 122-170 (235)
314 2rpa_A Katanin P60 ATPase-cont 24.7 1E+02 0.0035 17.4 8.2 34 43-76 15-48 (78)
315 2pmr_A Uncharacterized protein 23.1 1.2E+02 0.0041 17.6 4.2 30 41-70 40-69 (87)
316 2oo2_A Hypothetical protein AF 22.5 1.2E+02 0.0042 17.5 4.2 30 41-70 36-65 (86)
317 2xs1_A Programmed cell death 6 21.7 3.1E+02 0.01 22.0 6.9 37 41-77 261-297 (704)
318 3otn_A SUSD superfamily protei 21.7 2.1E+02 0.007 21.5 5.7 47 22-75 160-225 (482)
319 3mqm_A Probable histone-lysine 21.6 1.4E+02 0.0049 18.0 5.0 47 51-97 65-111 (126)
320 3qnk_A Putative lipoprotein; a 21.2 2.5E+02 0.0085 21.3 6.2 47 22-75 153-210 (517)
321 3re2_A Predicted protein; meni 20.5 2.8E+02 0.0097 21.0 7.9 68 25-93 276-348 (472)
322 2e2a_A Protein (enzyme IIA); h 20.3 1.3E+02 0.0046 18.0 3.6 28 36-63 16-43 (105)
323 3hdx_A SUSD homolog, SUSD supe 20.2 2.8E+02 0.0094 20.7 6.4 29 40-75 197-225 (478)
324 1wcr_A PTS system, N, N'-diace 20.1 1.4E+02 0.0047 17.8 3.6 29 37-65 15-43 (103)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.77 E-value=2e-17 Score=106.28 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=91.0
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
|+|..+..+.++|..+++.|+|++|+..|++++.++|.++.+|+++|.++..+|++++|+.. |+++++++|++
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~al~~~p~~ 80 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDD-------CDTCIRLDSKF 80 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTC
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHH-------HHHHHHhhhhh
Confidence 67999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..++..++.++..+++..++..
T Consensus 81 ~~a~~~lg~~~~~~~~~~~A~~ 102 (126)
T 4gco_A 81 IKGYIRKAACLVAMREWSKAQR 102 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999988876665
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.71 E-value=6.1e-17 Score=103.98 Aligned_cols=83 Identities=25% Similarity=0.499 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+++|.++.++|++++|+.+|++++.++|+++.+|+++|.++..+|++++|+.. |+++++++|++.
T Consensus 43 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~-------~~~al~l~P~~~ 115 (126)
T 4gco_A 43 DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRA-------YEDALQVDPSNE 115 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHCcCCH
Confidence 5778899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHH
Q 033182 82 QAKRTILRLQ 91 (125)
Q Consensus 82 ~~~~~l~~~~ 91 (125)
++...++.+.
T Consensus 116 ~a~~~l~~~l 125 (126)
T 4gco_A 116 EAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 9999888764
No 3
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.70 E-value=2e-16 Score=105.11 Aligned_cols=95 Identities=11% Similarity=-0.033 Sum_probs=90.8
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|....+++++|.++.+.|+|++|+..|++++.++|.++.+|+++|.++..+|+|++|+.. |+++++++|++
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~-------~~~al~l~P~~ 103 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADL-------YAVAFALGKND 103 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHH-------HHHHHhhCCCC
Confidence 46889999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+.++..++.++..+++..++..
T Consensus 104 ~~~~~~lg~~~~~lg~~~eA~~ 125 (151)
T 3gyz_A 104 YTPVFHTGQCQLRLKAPLKAKE 125 (151)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988877665
No 4
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.66 E-value=8e-16 Score=101.48 Aligned_cols=92 Identities=24% Similarity=0.298 Sum_probs=84.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+|+|.||.++|+|++|+.++++++.++|+++.+|+++|.++..+|++++|+.. |+++++++|+++
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~-------~~~al~l~p~~~ 131 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEED-------LKLLLRNHPAAA 131 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHH-------HHHHHhcCCCCH
Confidence 4667789999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred -HHHHHHHHHHHHHHHHHHH
Q 033182 82 -QAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 82 -~~~~~l~~~~~~~~~~~~~ 100 (125)
.+...+..+...+.+..+.
T Consensus 132 ~~~~~~l~~~~~~~~~~~~~ 151 (162)
T 3rkv_A 132 SVVAREMKIVTERRAEKKAD 151 (162)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 7788888888777765443
No 5
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.64 E-value=1.2e-15 Score=100.39 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=85.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+..++++|.+|++.|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+.. |+++++++|+++
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~ 99 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVEC-------YRRSVELNPTQK 99 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHH-------HHHHHHhCCCCH
Confidence 4677888999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLE 99 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~ 99 (125)
.++..++.++...++..+
T Consensus 100 ~~~~~la~~~~~~~~~~~ 117 (150)
T 4ga2_A 100 DLVLKIAELLCKNDVTDG 117 (150)
T ss_dssp HHHHHHHHHHHHHCSSSS
T ss_pred HHHHHHHHHHHHcCChHH
Confidence 999999999888776543
No 6
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.63 E-value=5e-16 Score=104.32 Aligned_cols=91 Identities=23% Similarity=0.312 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCCChHHH----HHHHHHHHHchhHHHHHHhHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKAL----IRRAEAHEKLEHFEEAIAGIQDLMIVMK 71 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-------~p~~~~~~----~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 71 (125)
|.++.+|.|+|.++.++|+|++|+.+|++++.+ +|+++++| +++|.++..+|++++|+.. |+
T Consensus 54 ~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~-------y~ 126 (159)
T 2hr2_A 54 GFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPE-------FK 126 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HH
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHH-------HH
Confidence 345679999999999999999999999999999 99999999 9999999999999999999 99
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 033182 72 KILEFDPSNNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 72 ~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 100 (125)
++++++|++..+...+..+.+.+.++...
T Consensus 127 kAlel~p~d~~~~~~~~~~~~~~~~~~~k 155 (159)
T 2hr2_A 127 KVVEMIEERKGETPGKERMMEVAIDRIAQ 155 (159)
T ss_dssp HHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888766543
No 7
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.62 E-value=3.9e-14 Score=89.45 Aligned_cols=93 Identities=23% Similarity=0.252 Sum_probs=86.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+..|.++|..+++.|+|++|+..|++++.++|+++.+++++|.++..+|++++|+.. ++++++++|++..
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~al~~~p~~~~ 73 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD-------CNKAIEKDPNFVR 73 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCcHH
Confidence 356788999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 74 ~~~~lg~~~~~~~~~~~A~~ 93 (126)
T 3upv_A 74 AYIRKATAQIAVKEYASALE 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHH
Confidence 99999999988887766654
No 8
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.61 E-value=1.2e-14 Score=95.44 Aligned_cols=95 Identities=8% Similarity=-0.029 Sum_probs=89.4
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|.....++++|.++...|+|++|+..|++++.++|.++.+|+++|.++..+|++++|+.. |+++++++|++
T Consensus 16 ~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~l~p~~ 88 (148)
T 2vgx_A 16 ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHS-------YSYGAVMDIXE 88 (148)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTC
T ss_pred CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCC
Confidence 35788899999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+.++..++.++...++..++..
T Consensus 89 ~~~~~~lg~~~~~~g~~~~A~~ 110 (148)
T 2vgx_A 89 PRFPFHAAECLLQXGELAEAES 110 (148)
T ss_dssp THHHHHHHHHHHHTTCHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998887776655
No 9
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.60 E-value=1.7e-14 Score=93.45 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=89.3
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++|.....++++|.++++.|+|++|+..|++++..+|+++.+|+.+|.++..+|++++|+.. |+++++++|++
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~ 85 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQS-------YSYGALMDINE 85 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCC
Confidence 35788899999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+.++..++.++...++..++..
T Consensus 86 ~~~~~~lg~~~~~~g~~~~A~~ 107 (142)
T 2xcb_A 86 PRFPFHAAECHLQLGDLDGAES 107 (142)
T ss_dssp THHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999998887776655
No 10
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.58 E-value=6.4e-14 Score=103.14 Aligned_cols=100 Identities=38% Similarity=0.563 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+....+|+++|.++.++|+|++|+..|++++.++|+++.+++++|.++..+|++++|+.. |+++++++|++..
T Consensus 193 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~l~P~~~~ 265 (336)
T 1p5q_A 193 ALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARAD-------FQKVLQLYPNNKA 265 (336)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCSSCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHCCCCHH
Confidence 455799999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHhhh
Q 033182 83 AKRTILRLQPLAEEKLEKMK---EEMIGKL 109 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~---~~~~~~~ 109 (125)
++..++.++..+++..++.+ ..++.++
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999888776644 4455554
No 11
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.2e-14 Score=91.78 Aligned_cols=85 Identities=26% Similarity=0.401 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC----
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD---- 77 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~---- 77 (125)
+|..+.+|+++|.++.++|+|++|+..+++++.++|+++.+++++|.++..+|++++|+.. |+++++++
T Consensus 34 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~ 106 (126)
T 3upv_A 34 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALET-------LDAARTKDAEVN 106 (126)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhCHHHHHHH-------HHHHHHhCcccC
Confidence 4667899999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred --CCcHHHHHHHHHHHHH
Q 033182 78 --PSNNQAKRTILRLQPL 93 (125)
Q Consensus 78 --p~~~~~~~~l~~~~~~ 93 (125)
|++..+...+..+...
T Consensus 107 ~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 107 NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp TTTTHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHh
Confidence 9999999888887654
No 12
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.58 E-value=1.5e-13 Score=94.34 Aligned_cols=89 Identities=17% Similarity=0.114 Sum_probs=81.6
Q ss_pred hhHHHHHHHH----------------HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHH
Q 033182 2 AELRSICHSN----------------RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65 (125)
Q Consensus 2 ~~~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 65 (125)
+|..+.+|+. +|.++.++|++++|+..|++++.++|+++.+++++|.++..+|++++|+..
T Consensus 34 ~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~--- 110 (208)
T 3urz_A 34 NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRM--- 110 (208)
T ss_dssp CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH---
T ss_pred CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 4566677777 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 66 LMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 66 ~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
|+++++++|++..++..++.++...++.
T Consensus 111 ----~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 111 ----YEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp ----HHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 9999999999999999999987655443
No 13
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.57 E-value=2.3e-14 Score=91.75 Aligned_cols=93 Identities=17% Similarity=0.159 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH-
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN- 81 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~- 81 (125)
+..+.++.++|..+++.|+|++|+..|++++.++|+++.+|.++|.++..+|+|++|+.. ++++++++|++.
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~-------~~~al~~~~~~~~ 77 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF-------CEKAVEVGRETRA 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHH-------HHHHHHhCcccch
Confidence 345678999999999999999999999999999999999999999999999999999999 999999988764
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 ------QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ------~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++..+++..++..
T Consensus 78 ~~~~~a~~~~~lg~~~~~~~~~~~A~~ 104 (127)
T 4gcn_A 78 DYKLIAKAMSRAGNAFQKQNDLSLAVQ 104 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 355666666666665555443
No 14
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.56 E-value=1.4e-13 Score=87.50 Aligned_cols=89 Identities=13% Similarity=0.116 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
..++++|..+.+.|++++|+..+++++..+|+++.+|+.+|.++..+|++++|+.. |+++++++|++..++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~l~P~~~~~~~~ 90 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIA-------LNHARMLDPKDIAVHAA 90 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 033182 87 ILRLQPLAEEKLEKMK 102 (125)
Q Consensus 87 l~~~~~~~~~~~~~~~ 102 (125)
++.++...++..++..
T Consensus 91 la~~~~~~g~~~~A~~ 106 (121)
T 1hxi_A 91 LAVSHTNEHNANAALA 106 (121)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHH
Confidence 9999998888766654
No 15
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.55 E-value=2.8e-13 Score=93.58 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.+++++|.++.+.|++++|+..|++++.++|+++.+++++|.++..+|++++|+.. |+++++++|++..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~~~P~~~~ 74 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALEN-------GKTLVARTPRYLG 74 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCcHH
Confidence 456789999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHH-----------HHHHHHHH
Q 033182 83 AKRTILRLQPLA-----------EEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~-----------~~~~~~~~ 102 (125)
++..++.++... ++..++..
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~ 105 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALS 105 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHH
Confidence 999999999888 77766654
No 16
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.55 E-value=1.7e-13 Score=90.37 Aligned_cols=93 Identities=17% Similarity=0.085 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+..+..|+++|.++++.|+|++|+..|++++.++|+++.+++++|.++..+|++++|+.. |+++++++|++..
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~~ 80 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAED-------AELATVVDPKYSK 80 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCCHH
Confidence 456788999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~ 100 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKE 100 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHH
Confidence 99999999888877766654
No 17
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.55 E-value=9.2e-14 Score=93.26 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-------ChH-----HHHHHHHHHHHchhHHHHHHhHHHHHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT-------YMK-----ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-------~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 72 (125)
.+..+.++|..+++.|+|++|+..|++++.++|+ +.. +|+++|.++..+|+|++|+..+.+++.+|.+
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 3567899999999999999999999999999999 444 9999999999999999999996666666666
Q ss_pred HHhhCCCcHHHH----HHHHHHHHHHHHHHHHHH
Q 033182 73 ILEFDPSNNQAK----RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 73 a~~l~p~~~~~~----~~l~~~~~~~~~~~~~~~ 102 (125)
..+++|++..++ ..++.+...+++..++..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~ 123 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMP 123 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence 666699999999 999999998887776655
No 18
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.54 E-value=2e-13 Score=83.61 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc----
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN---- 80 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~---- 80 (125)
.+..|+++|.++...|+|++|+..|++++.++|.++.+++++|.++..+|++++|+.. ++++++++|++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~~ 75 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQM-------CQQGLRYTSTAEHVA 75 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTSCSSTTSHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCccHHH
Confidence 4678999999999999999999999999999999999999999999999999999999 99999999998
Q ss_pred --HHHHHHHHHHHHHHH
Q 033182 81 --NQAKRTILRLQPLAE 95 (125)
Q Consensus 81 --~~~~~~l~~~~~~~~ 95 (125)
..++..++.+...++
T Consensus 76 ~~~~~~~~~~~~~~~~~ 92 (111)
T 2l6j_A 76 IRSKLQYRLELAQGAVG 92 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 667777776665554
No 19
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.54 E-value=6.1e-14 Score=93.03 Aligned_cols=73 Identities=7% Similarity=0.054 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+++|.++..+|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+.. |++++++.|+.+
T Consensus 66 ~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~-------~~~al~l~~~~~ 138 (151)
T 3gyz_A 66 DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKEC-------FELVIQHSNDEK 138 (151)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCCCHH
T ss_pred CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCHH
Confidence 5788999999999999999999999999999999999999999999999999999999999 999999999865
No 20
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.54 E-value=2e-13 Score=80.89 Aligned_cols=83 Identities=31% Similarity=0.414 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+.+++++|.++...|++++|+..+++++..+|.++.+++++|.++...|++++|+.. ++++++++|++..+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~a~~~~p~~~~~ 79 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY-------YQKALELDPNNAEA 79 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHhcCCCCHHH
Confidence 46788999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHH
Q 033182 84 KRTILRLQPL 93 (125)
Q Consensus 84 ~~~l~~~~~~ 93 (125)
+..++.++..
T Consensus 80 ~~~l~~~~~~ 89 (91)
T 1na3_A 80 KQNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9998887654
No 21
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.54 E-value=6.9e-14 Score=106.91 Aligned_cols=93 Identities=32% Similarity=0.500 Sum_probs=83.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+....+|+|+|.||.++|+|++|+.+|++++.++|+++++++++|.++..+|+|++|+.. |+++++++|++..
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~-------~~~al~l~P~~~~ 386 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD-------FEKVLEVNPQNKA 386 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTC----C
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCCHH
Confidence 455789999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..+..++..+++..++.+
T Consensus 387 a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 387 ARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887766554
No 22
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.53 E-value=5.7e-14 Score=92.67 Aligned_cols=89 Identities=24% Similarity=0.284 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+++|.+|...|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+.. |+++++++|++.
T Consensus 41 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~ 113 (164)
T 3sz7_A 41 APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEA-------YEKGIEAEGNGG 113 (164)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHSSSC
T ss_pred CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCch
Confidence 4667889999999999999999999999999999999999999999999999999999999 999999999988
Q ss_pred H--HHHHHHHHHHHHHHH
Q 033182 82 Q--AKRTILRLQPLAEEK 97 (125)
Q Consensus 82 ~--~~~~l~~~~~~~~~~ 97 (125)
. ....+..+...+++.
T Consensus 114 ~~~~~~~l~~~~~~~~~~ 131 (164)
T 3sz7_A 114 SDAMKRGLETTKRKIEEA 131 (164)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 7 555555555555544
No 23
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=3.6e-13 Score=89.70 Aligned_cols=90 Identities=18% Similarity=0.255 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.+++|+++|.+|.++|+|++|+..|+++++++|+++.+++.+|.++..+|++++|+.. +.+++..+|++..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~-------~~~~~~~~~~~~~~~ 76 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIES-------LKKFVVLDTTSAEAY 76 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCchhHHHH
Confidence 4689999999999999999999999999999999999999999999999999999999 888888888888888
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKM 101 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~ 101 (125)
..++.+....++.....
T Consensus 77 ~~~~~~~~~~~~~~~a~ 93 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAI 93 (184)
T ss_dssp HHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHcCCHHHHH
Confidence 87777776655544333
No 24
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.53 E-value=5.7e-14 Score=90.97 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=79.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+++|.++...|+|++|+..|++++.++|+++.+++++|.++..+|++++|+.. |+++++++|+++
T Consensus 48 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~ 120 (142)
T 2xcb_A 48 DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESG-------FYSARALAAAQP 120 (142)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHTCG
T ss_pred CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCc
Confidence 4678899999999999999999999999999999999999999999999999999999999 999999999888
Q ss_pred HHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEE 96 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~ 96 (125)
........+...++.
T Consensus 121 ~~~~~~~~~~~~l~~ 135 (142)
T 2xcb_A 121 AHEALAARAGAMLEA 135 (142)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 776666666555543
No 25
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.53 E-value=4.9e-14 Score=92.51 Aligned_cols=87 Identities=15% Similarity=0.144 Sum_probs=77.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+++|.++...|+|++|+..|++++.++|+++.+++++|.++..+|++++|+.. |+++++++|+++
T Consensus 51 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~ 123 (148)
T 2vgx_A 51 DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESG-------LFLAQELIANXP 123 (148)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHTTCG
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCCC
Confidence 4678899999999999999999999999999999999999999999999999999999999 999999999887
Q ss_pred HHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAE 95 (125)
Q Consensus 82 ~~~~~l~~~~~~~~ 95 (125)
........+...+.
T Consensus 124 ~~~~~~~~~~~~l~ 137 (148)
T 2vgx_A 124 EFXELSTRVSSMLE 137 (148)
T ss_dssp GGHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHH
Confidence 76555555554444
No 26
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.53 E-value=1.3e-14 Score=95.37 Aligned_cols=85 Identities=15% Similarity=0.147 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+++|.+|.++|++++|+..|+++++++|+++.+++++|.++..+|++++|... .++++++++|+++
T Consensus 61 ~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~------~~~~al~l~P~~~ 134 (150)
T 4ga2_A 61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY------WVERAAKLFPGSP 134 (150)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH------HHHHHHHHSTTCH
T ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH------HHHHHHHhCcCCH
Confidence 5778999999999999999999999999999999999999999999999999999887764 0589999999999
Q ss_pred HHHHHHHHHHH
Q 033182 82 QAKRTILRLQP 92 (125)
Q Consensus 82 ~~~~~l~~~~~ 92 (125)
.++.....+..
T Consensus 135 ~~~~l~~~ll~ 145 (150)
T 4ga2_A 135 AVYKLKEQLLD 145 (150)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 27
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.53 E-value=1.6e-13 Score=110.58 Aligned_cols=94 Identities=17% Similarity=0.182 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.|..+.+|+|+|.++.++|++++|+..|+++++++|+++.+++++|.++..+|++++|+.. |+++++++|++.
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~-------~~~Al~l~P~~~ 77 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH-------YKEAIRISPTFA 77 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCH
Confidence 3667788888888888888888888888888888888888888888888888888888888 888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++..+++..++..
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~ 98 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQ 98 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 888888888877776665544
No 28
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.52 E-value=3.1e-13 Score=101.03 Aligned_cols=94 Identities=29% Similarity=0.560 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
++....+|.++|.++.++|+|++|+.++++++.++|+++++++++|.++..+|++++|+.. |+++++++|++.
T Consensus 269 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~-------l~~Al~l~P~~~ 341 (370)
T 1ihg_A 269 QPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALAD-------LKKAQEIAPEDK 341 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCCH
Confidence 4667899999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..+..+...+++..++.+
T Consensus 342 ~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 342 AIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988887766554
No 29
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.52 E-value=2.9e-13 Score=93.53 Aligned_cols=94 Identities=16% Similarity=0.116 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-----------hhHHHHHHhHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-----------EHFEEAIAGIQDLMIVM 70 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~-----------~~~~~A~~~~~~~~~~~ 70 (125)
+|..+.+++++|.++.+.|++++|+..+++++.++|+++.+++++|.++..+ |++++|+.. |
T Consensus 35 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~-------~ 107 (217)
T 2pl2_A 35 NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV-------L 107 (217)
T ss_dssp SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH-------H
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH-------H
Confidence 5778899999999999999999999999999999999999999999999999 999999999 9
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 71 KKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 71 ~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+++++++|++..++..++.++...++..++..
T Consensus 108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 139 (217)
T 2pl2_A 108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEA 139 (217)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCcccHHHHHHHHHHHHHcCChHHHHH
Confidence 99999999999999999999888777665544
No 30
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.52 E-value=7.5e-14 Score=93.59 Aligned_cols=86 Identities=19% Similarity=0.247 Sum_probs=76.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHHch-----------hHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKF----------EESIKECTKALELNPTYMKALIRRAEAHEKLE-----------HFEEAI 60 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~----------~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-----------~~~~A~ 60 (125)
+|.++.+|.++|.++.+.+++ ++|+..|+++++++|++..+|+++|.+|..+| ++++|+
T Consensus 32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~ 111 (158)
T 1zu2_A 32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLAT 111 (158)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHH
Confidence 578899999999999999876 59999999999999999999999999999985 899999
Q ss_pred HhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182 61 AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLA 94 (125)
Q Consensus 61 ~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 94 (125)
.+ |++|++++|++......+..+.+..
T Consensus 112 ~~-------~~kAl~l~P~~~~y~~al~~~~ka~ 138 (158)
T 1zu2_A 112 QF-------FQQAVDEQPDNTHYLKSLEMTAKAP 138 (158)
T ss_dssp HH-------HHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred HH-------HHHHHHhCCCCHHHHHHHHHHHhCH
Confidence 99 9999999999988777666554433
No 31
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.51 E-value=2.1e-13 Score=86.58 Aligned_cols=94 Identities=20% Similarity=0.142 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
++..+..++++|.+++..|+|++|+..|++++.++|+++.+++++|.++..+|++++|+.. ++++++++|++.
T Consensus 5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~p~~~ 77 (137)
T 3q49_B 5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD-------CRRALELDGQSV 77 (137)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCchhH
Confidence 3556889999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++...+..
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~ 98 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIA 98 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 999999999988887766554
No 32
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.50 E-value=2.8e-13 Score=84.93 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.++.++|.++..+|+|++|+..+++++.++|+++.+++++|.++..+|++++|+.. ++++++.+|+++
T Consensus 23 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~ 95 (117)
T 3k9i_A 23 GKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL-------LLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHCCCH
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCcH
Confidence 5788999999999999999999999999999999999999999999999999999999999 999999999998
Q ss_pred HHHHHH
Q 033182 82 QAKRTI 87 (125)
Q Consensus 82 ~~~~~l 87 (125)
.+....
T Consensus 96 ~~~~~~ 101 (117)
T 3k9i_A 96 TIQSYK 101 (117)
T ss_dssp HHHHTH
T ss_pred HHHHHH
Confidence 765433
No 33
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.50 E-value=4.4e-13 Score=90.86 Aligned_cols=89 Identities=21% Similarity=0.296 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
..++.++|.++..+|+|++|+..+++++.++|+++.+++++|.++..+|++++|+.. |+++++++|++..++.
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~~ 160 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN-------LYKAASLNPNNLDIRN 160 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH-------HHHHHHHCCCcHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 033182 86 TILRLQPLAEEKLEKM 101 (125)
Q Consensus 86 ~l~~~~~~~~~~~~~~ 101 (125)
.+..+...+++..+..
T Consensus 161 ~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 161 SYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999998888776555
No 34
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=2.8e-13 Score=109.19 Aligned_cols=94 Identities=15% Similarity=0.280 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+|+|.++.++|++++|+..|+++++++|+++.+|+++|.++..+|++++|+.. |+++++++|++.
T Consensus 39 ~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~-------~~kAl~l~P~~~ 111 (723)
T 4gyw_A 39 FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQC-------YTRAIQINPAFA 111 (723)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCH
Confidence 4566788999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++..++..
T Consensus 112 ~a~~~Lg~~~~~~g~~~eAi~ 132 (723)
T 4gyw_A 112 DAHSNLASIHKDSGNIPEAIA 132 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 999999999888877766654
No 35
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.48 E-value=4.7e-13 Score=82.16 Aligned_cols=82 Identities=12% Similarity=0.145 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS-- 79 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~-- 79 (125)
+|..+.+++++|.++...|+|++|+..|++++.++|+++.+|+++|.++..+|++++|+.. |++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~l~~~~~ 75 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT-------YAQGIEVAREEG 75 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhhhcCC
Confidence 5778899999999999999999999999999999999999999999999999999999999 9999988764
Q ss_pred cHHHHHHHHHH
Q 033182 80 NNQAKRTILRL 90 (125)
Q Consensus 80 ~~~~~~~l~~~ 90 (125)
+......+..+
T Consensus 76 ~~~~~~~l~~~ 86 (100)
T 3ma5_A 76 TQKDLSELQDA 86 (100)
T ss_dssp CHHHHHHHHHH
T ss_pred chhHHHHHHHH
Confidence 33343344333
No 36
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.46 E-value=1e-13 Score=84.29 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=86.9
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC-
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS- 79 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~- 79 (125)
++|..+.+++++|.++...|++++|+..+++++.++|.+..+++++|.++..+|++++|+.. ++++++.+|+
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~a~~~~~~~ 73 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC-------YNYVINVIEDE 73 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTSCCT
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCccc
Confidence 45677888999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred -cHHHHHHHHHHHHHH-HHHHHHHH
Q 033182 80 -NNQAKRTILRLQPLA-EEKLEKMK 102 (125)
Q Consensus 80 -~~~~~~~l~~~~~~~-~~~~~~~~ 102 (125)
+..++..++.++... ++..++..
T Consensus 74 ~~~~~~~~l~~~~~~~~~~~~~A~~ 98 (112)
T 2kck_A 74 YNKDVWAAKADALRYIEGKEVEAEI 98 (112)
T ss_dssp TCHHHHHHHHHHHTTCSSCSHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999998877 66554443
No 37
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.46 E-value=3.8e-12 Score=77.75 Aligned_cols=91 Identities=14% Similarity=0.184 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.+..++.+|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|+.. ++++++.+|++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~ 75 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYED-------GCKTVDLKPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHH-------HHHHHHhCcccHHHH
Confidence 4678899999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~ 102 (125)
..++.++...++..++..
T Consensus 76 ~~~a~~~~~~~~~~~A~~ 93 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKR 93 (118)
T ss_dssp HHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHH
Confidence 999999888877665554
No 38
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.46 E-value=3.7e-13 Score=85.42 Aligned_cols=89 Identities=21% Similarity=0.412 Sum_probs=80.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS-- 79 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~-- 79 (125)
+|..+.+|+++|.++..+|++++|+..+++++.++|+++.+++++|.++..+|++++|+.. |+++++++|+
T Consensus 39 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~a~~~~p~~~ 111 (137)
T 3q49_B 39 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN-------LQRAYSLAKEQR 111 (137)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHTT
T ss_pred CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHHChhHH
Confidence 3567889999999999999999999999999999999999999999999999999999999 9999999988
Q ss_pred ---cHHHHHHHHHHHHHHHHH
Q 033182 80 ---NNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 80 ---~~~~~~~l~~~~~~~~~~ 97 (125)
+..+...+..+.......
T Consensus 112 ~~~~~~~~~~l~~~~~~~~~~ 132 (137)
T 3q49_B 112 LNFGDDIPSALRIAKKKRWNS 132 (137)
T ss_dssp CCCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777888888776655544
No 39
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.46 E-value=1.7e-12 Score=85.33 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------------------CCCChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALEL------------------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 66 (125)
.+..+.++|..+++.|+|++|+..|++++.+ +|.+..+|+++|.++..+|+|++|+..
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~---- 85 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEET---- 85 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHH----
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH----
Confidence 4678999999999999999999999999999 788889999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 67 MIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+.++++++|++..++..++.++..+++..++..
T Consensus 86 ---~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~ 118 (162)
T 3rkv_A 86 ---SSEVLKREETNEKALFRRAKARIAAWKLDEAEE 118 (162)
T ss_dssp ---HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence 999999999999999999999999988776655
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.45 E-value=3.1e-13 Score=101.62 Aligned_cols=91 Identities=16% Similarity=0.070 Sum_probs=63.2
Q ss_pred hhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 2 AELRSICHSNRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
+|....+|+++|.++..+|+ +++|+..|++++.++|++..+|+++|.++..+|++++|+.. |+++++++|++
T Consensus 127 ~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~-------~~kal~ldP~~ 199 (382)
T 2h6f_A 127 NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEF-------IADILNQDAKN 199 (382)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHH-------HHHHHHHCTTC
T ss_pred CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCccC
Confidence 35556677777777777775 77777777777777777777777777777777777777777 77777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLE 99 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~ 99 (125)
..++..++.+...+++..+
T Consensus 200 ~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 200 YHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHHHcCChHH
Confidence 7777777777666654443
No 41
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.44 E-value=3.2e-12 Score=79.92 Aligned_cols=93 Identities=18% Similarity=0.249 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+..+..|+++|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|+.. ++++++.+|++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~ 85 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKD-------CEECIQLEPTFIK 85 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCCchH
Confidence 567789999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 86 ~~~~la~~~~~~~~~~~A~~ 105 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMD 105 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 99999999988877766654
No 42
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.44 E-value=4e-13 Score=85.31 Aligned_cols=74 Identities=19% Similarity=0.135 Sum_probs=65.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+++|.++...|++++|+..+++++.++|+++.+++++|.++..+|++++|+.. ++++++++|++.
T Consensus 47 ~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~P~~~ 119 (121)
T 1hxi_A 47 EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALAS-------LRAWLLSQPQYE 119 (121)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHC------
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcCCC
Confidence 4778899999999999999999999999999999999999999999999999999999999 999999999875
Q ss_pred H
Q 033182 82 Q 82 (125)
Q Consensus 82 ~ 82 (125)
.
T Consensus 120 ~ 120 (121)
T 1hxi_A 120 Q 120 (121)
T ss_dssp -
T ss_pred C
Confidence 4
No 43
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.44 E-value=4.2e-13 Score=85.84 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=69.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
+|..+.+|.|+|.+|.++|+|++|+.++++++.++|++ +.+++++|.++..+|++++|+.. |++++
T Consensus 38 ~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~-------~~kal 110 (127)
T 4gcn_A 38 DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW-------FHRSL 110 (127)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHH
T ss_pred CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHH
Confidence 57788999999999999999999999999999999876 46899999999999999999999 99999
Q ss_pred hhCCCcHHHHHHHHH
Q 033182 75 EFDPSNNQAKRTILR 89 (125)
Q Consensus 75 ~l~p~~~~~~~~l~~ 89 (125)
+.+|+ ++....+..
T Consensus 111 ~~~~~-~~~~~~l~~ 124 (127)
T 4gcn_A 111 SEFRD-PELVKKVKE 124 (127)
T ss_dssp HHSCC-HHHHHHHHH
T ss_pred hhCcC-HHHHHHHHH
Confidence 98886 444444443
No 44
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.44 E-value=2.8e-12 Score=87.98 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH----------------HHHHHHHchhHHHHHHhHHHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR----------------RAEAHEKLEHFEEAIAGIQDLMIV 69 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~----------------~~~~~~~~~~~~~A~~~~~~~~~~ 69 (125)
+..+..+|..++..|+|++|+..|++++.++|+++.+++. +|.++..+|++++|+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~------- 76 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF------- 76 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH-------
Confidence 4568899999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 70 MKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 70 ~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
|+++++++|++..++..++.++...++..++..
T Consensus 77 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~ 109 (208)
T 3urz_A 77 YKELLQKAPNNVDCLEACAEMQVCRGQEKDALR 109 (208)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999998887776655
No 45
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.43 E-value=1.1e-11 Score=76.86 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=86.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
++..+..+..+|.++...|++++|+..+++++..+|+++.+++.+|.++...|++++|+.. ++++++.+|++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~ 80 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQD-------CERAICIDPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHH-------HHHHHhcCccCH
Confidence 4677889999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++..++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~ 101 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVA 101 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHH
Confidence 999999999888877766655
No 46
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.43 E-value=2.8e-12 Score=78.35 Aligned_cols=82 Identities=27% Similarity=0.414 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.++.++|.++...|++++|+..+++++..+|+++.+++++|.++..+|++++|... ++++++.+|+++.
T Consensus 35 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~ 107 (118)
T 1elw_A 35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRT-------YEEGLKHEANNPQ 107 (118)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTCTTCHH
T ss_pred CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHcCCCCHH
Confidence 556789999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHH
Q 033182 83 AKRTILRLQ 91 (125)
Q Consensus 83 ~~~~l~~~~ 91 (125)
++..++.+.
T Consensus 108 ~~~~l~~~~ 116 (118)
T 1elw_A 108 LKEGLQNME 116 (118)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 988888765
No 47
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.43 E-value=2.5e-12 Score=79.97 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS-- 79 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~-- 79 (125)
+|..+.+++++|.++...|++++|+..|++++.++|.++.+++++|.++..+|++++|+.. |+++++++|+
T Consensus 15 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~~~~~ 87 (115)
T 2kat_A 15 GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQA-------WESGLAAAQSRG 87 (115)
T ss_dssp TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhccccc
Confidence 4667889999999999999999999999999999999999999999999999999999999 9999998874
Q ss_pred cHHHHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~ 97 (125)
+......+......++..
T Consensus 88 ~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 88 DQQVVKELQVFLRRLARE 105 (115)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccc
Confidence 445555555555544433
No 48
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.43 E-value=2.2e-12 Score=88.61 Aligned_cols=92 Identities=18% Similarity=0.151 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH--
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN-- 81 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~-- 81 (125)
....+++++|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|+.. ++++++++|++.
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~ 112 (228)
T 4i17_A 40 QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIAT-------LTEGIKAVPGNATI 112 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTCHHH
T ss_pred CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHH-------HHHHHHHCCCcHHH
Confidence 55678889999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 -----QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 -----~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.+....++..++..
T Consensus 113 ~~~~~~~~~~~g~~~~~~~~~~~A~~ 138 (228)
T 4i17_A 113 EKLYAIYYLKEGQKFQQAGNIEKAEE 138 (228)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHhccHHHHHH
Confidence 557777777766665555544
No 49
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.42 E-value=5.6e-12 Score=79.07 Aligned_cols=89 Identities=20% Similarity=0.144 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc---
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYM---KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--- 80 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--- 80 (125)
..++++|.+++..|+|++|+..+++++..+|+++ .+++.+|.++..+|++++|+.. |+++++.+|++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~~~~~~p~~~~~ 75 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQ-------FRDLVSRYPTHDKA 75 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTSTTH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHHCCCCccc
Confidence 3577889999999999999999999999999887 7999999999999999999999 99999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+.++..++.++...++..++..
T Consensus 76 ~~~~~~la~~~~~~g~~~~A~~ 97 (129)
T 2xev_A 76 AGGLLKLGLSQYGEGKNTEAQQ 97 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888777666554
No 50
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.41 E-value=6.1e-12 Score=92.51 Aligned_cols=94 Identities=20% Similarity=0.225 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---------------MKALIRRAEAHEKLEHFEEAIAGIQDL 66 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~ 66 (125)
+|..+.++.++|.++++.|+|++|+..|++++.++|.+ ..+++++|.++..+|+|++|+..
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~---- 218 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES---- 218 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH----
Confidence 45678899999999999999999999999999999998 69999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 67 MIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
|+++++++|++..++..++.++..+++..++..
T Consensus 219 ---~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 251 (336)
T 1p5q_A 219 ---CNKALELDSNNEKGLSRRGEAHLAVNDFELARA 251 (336)
T ss_dssp ---HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999988887766654
No 51
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.41 E-value=3.9e-12 Score=78.93 Aligned_cols=86 Identities=29% Similarity=0.459 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.++.++|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|... ++++++++|++..
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAY-------YKKALELDPDNET 115 (131)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTCHH
T ss_pred CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHhcCccchH
Confidence 456788999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAE 95 (125)
Q Consensus 83 ~~~~l~~~~~~~~ 95 (125)
++..++.+...++
T Consensus 116 ~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 116 YKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999888876554
No 52
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.41 E-value=1.9e-12 Score=81.01 Aligned_cols=86 Identities=28% Similarity=0.479 Sum_probs=80.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|....+++++|.++...|++++|+..+++++..+|.++.+++++|.++..+|++++|+.. |+++++++|++.
T Consensus 46 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~p~~~ 118 (133)
T 2lni_A 46 NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV-------YQKALDLDSSCK 118 (133)
T ss_dssp CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCGGGT
T ss_pred CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHhCCCch
Confidence 3556789999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLA 94 (125)
Q Consensus 82 ~~~~~l~~~~~~~ 94 (125)
.++..++.++...
T Consensus 119 ~~~~~l~~~~~~~ 131 (133)
T 2lni_A 119 EAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9998888877543
No 53
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.40 E-value=1.6e-11 Score=75.45 Aligned_cols=90 Identities=29% Similarity=0.344 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
+.+++++|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|+.. ++++++.+|++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~~ 81 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY-------YQKALELDPNNAEAWY 81 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHhCCccHHHHH
Confidence 678999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 86 TILRLQPLAEEKLEKMK 102 (125)
Q Consensus 86 ~l~~~~~~~~~~~~~~~ 102 (125)
.++.++...++...+..
T Consensus 82 ~la~~~~~~~~~~~A~~ 98 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIE 98 (125)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCHHHHHH
Confidence 99999887776665554
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.40 E-value=3.5e-12 Score=95.90 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=88.2
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-HHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 1 MAELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH-FEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
++|....+|.++|.++...|++++|+..|++++.++|++..+|+++|.++..+|+ +++|+.. |+++++++|+
T Consensus 92 ~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~-------~~~al~l~P~ 164 (382)
T 2h6f_A 92 YSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNY-------ITAIIEEQPK 164 (382)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHCTT
T ss_pred CChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHH-------HHHHHHHCCC
Confidence 3577889999999999999999999999999999999999999999999999997 9999999 9999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+..++..++.++..+++..++..
T Consensus 165 ~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 165 NYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp CHHHHHHHHHHHHHHTCCTTHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999988876655543
No 55
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.39 E-value=1.3e-11 Score=79.99 Aligned_cols=80 Identities=24% Similarity=0.451 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+.++.++|.++...|++++|+..+++++.++|.++.+++++|.++..+|++++|+.. |+++++++|++..+
T Consensus 45 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~a~~~~p~~~~~ 117 (166)
T 1a17_A 45 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD-------YETVVKVKPHDKDA 117 (166)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTCHHH
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCCCHHH
Confidence 34455666666666666666666666666666666666666666666666666666666 66666666665555
Q ss_pred HHHHHHH
Q 033182 84 KRTILRL 90 (125)
Q Consensus 84 ~~~l~~~ 90 (125)
+..+..+
T Consensus 118 ~~~~~~~ 124 (166)
T 1a17_A 118 KMKYQEC 124 (166)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5443333
No 56
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=9.6e-12 Score=79.21 Aligned_cols=78 Identities=29% Similarity=0.559 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
..+|.++|.++...|++++|+..+++++.++|+++.+++++|.++..+|++++|... |+++++++|++..+..
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~~ 137 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLD-------LQRCVSLEPKNKVFQE 137 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCCCcHHHHH
Confidence 455555566665556666666666666655555555556666666666666666555 5555555555555555
Q ss_pred HHHHH
Q 033182 86 TILRL 90 (125)
Q Consensus 86 ~l~~~ 90 (125)
.+..+
T Consensus 138 ~l~~~ 142 (148)
T 2dba_A 138 ALRNI 142 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 57
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.38 E-value=7.1e-12 Score=83.33 Aligned_cols=93 Identities=16% Similarity=0.153 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.++.++|.++...++++.|...+.+++.++|.+..++..+|.++..+|++++|+.. |+++++++|++..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~~l~~~p~~~~ 142 (184)
T 3vtx_A 70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEA-------YEKTISIKPGFIR 142 (184)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHH-------HHHHHHhcchhhh
Confidence 334556667777777777777777777777777777888888888888888888888888 8888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 143 ~~~~lg~~~~~~g~~~~A~~ 162 (184)
T 3vtx_A 143 AYQSIGLAYEGKGLRDEAVK 162 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHH
Confidence 88888888877776665554
No 58
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.38 E-value=4.4e-12 Score=87.13 Aligned_cols=92 Identities=10% Similarity=0.018 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
.++..++++|.+++..|+|++|+..|++++.++| .+..+++++|.++..+|++++|+.. |+++++++|++..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~al~~~p~~~~ 77 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADY-------FDIAIKKNYNLAN 77 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTCSHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHH-------HHHHHHhCcchHH
Confidence 4568999999999999999999999999999999 9999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~ 97 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIA 97 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHH
Confidence 99999999988887766655
No 59
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.37 E-value=1e-11 Score=75.02 Aligned_cols=69 Identities=16% Similarity=0.268 Sum_probs=66.3
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMK-ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.+++|.++...|++++|+..+++++..+|+++. +++++|.++..+|++++|+.. |+++++++|++..++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNN-------YQSAIELNPDSPALQ 72 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTSTHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCCcHHHH
Confidence 367899999999999999999999999999999 999999999999999999999 999999999999887
No 60
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.9e-11 Score=77.80 Aligned_cols=93 Identities=20% Similarity=0.153 Sum_probs=86.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+.....++.+|.++...|+|++|+..|++++..+|++ ..+++++|.++..+|++++|+.. ++++++++|+
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~ 97 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETE-------ASKAIEKDGG 97 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHH-------HHHHHhhCcc
Confidence 4567889999999999999999999999999999998 99999999999999999999999 9999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+..++..++.++...++..++..
T Consensus 98 ~~~~~~~~a~~~~~~~~~~~A~~ 120 (148)
T 2dba_A 98 DVKALYRRSQALEKLGRLDQAVL 120 (148)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999988887766654
No 61
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.36 E-value=4.7e-11 Score=80.72 Aligned_cols=93 Identities=18% Similarity=0.126 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----------------HHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM----------------KALIRRAEAHEKLEHFEEAIAGIQDL 66 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~----------------~~~~~~~~~~~~~~~~~~A~~~~~~~ 66 (125)
+..+..+.++|.+++..|+|++|+..|++++.+.|.++ .+++++|.++..+|+|++|+..
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~---- 110 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH---- 110 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH----
Confidence 34567899999999999999999999999999999887 8999999999999999999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 67 MIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++++++++|++..++..++.++...++...+..
T Consensus 111 ---~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~ 143 (198)
T 2fbn_A 111 ---ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE 143 (198)
T ss_dssp ---HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ---HHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH
Confidence 999999999999999999999988887766654
No 62
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.36 E-value=1.9e-11 Score=79.23 Aligned_cols=92 Identities=17% Similarity=0.152 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+..+.++|.++...|++++|+..+++++..+|.++.+++++|.++..+|++++|+.. ++++++++|++..+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~~ 83 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD-------ATRAIELDKKYIKG 83 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcccHHH
Confidence 45778999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
+..++.++...++..++..
T Consensus 84 ~~~~a~~~~~~~~~~~A~~ 102 (166)
T 1a17_A 84 YYRRAASNMALGKFRAALR 102 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHH
Confidence 9999999988877766554
No 63
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.35 E-value=1.3e-12 Score=96.34 Aligned_cols=84 Identities=26% Similarity=0.503 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
.+|+|+|.||.++|+|++|+..|++++.++|++.++++++|.++..+|++++|+.. |+++++++|++..++..
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~-------l~~al~l~p~~~~a~~~ 303 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDD-------FRKAQKYAPDDKAIRRE 303 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH-------HHHTTC-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCCHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHH
Q 033182 87 ILRLQPLAEEK 97 (125)
Q Consensus 87 l~~~~~~~~~~ 97 (125)
+..+.......
T Consensus 304 L~~l~~~~~~~ 314 (338)
T 2if4_A 304 LRALAEQEKAL 314 (338)
T ss_dssp -----------
T ss_pred HHHHHHHHHHH
Confidence 99886555433
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.35 E-value=6.9e-12 Score=90.00 Aligned_cols=92 Identities=21% Similarity=0.146 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+..+.++|..++..|+|++|+..|++++.++|+++.+++++|.++..+|++++|+.. ++++++++|++..+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~ 74 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALAD-------CRRALELDGQSVKA 74 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHTTSCTTCHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCCHHH
Confidence 35678899999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
+..++.++...++..++..
T Consensus 75 ~~~lg~~~~~~g~~~~A~~ 93 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIA 93 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 9999988888776665554
No 65
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.35 E-value=1.8e-11 Score=76.73 Aligned_cols=80 Identities=15% Similarity=0.121 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+.+++++|.++...|+|++|+..+++++..+|++ +.+++.+|.++..+|++++|+.. |+++++..|++..
T Consensus 39 ~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~~~~~~p~~~~ 111 (129)
T 2xev_A 39 PNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQT-------LQQVATQYPGSDA 111 (129)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCCCChH
Confidence 3789999999999999999999999999999999 89999999999999999999999 9999999999988
Q ss_pred HHHHHHHHHH
Q 033182 83 AKRTILRLQP 92 (125)
Q Consensus 83 ~~~~l~~~~~ 92 (125)
+......+..
T Consensus 112 ~~~a~~~l~~ 121 (129)
T 2xev_A 112 ARVAQERLQS 121 (129)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8777666554
No 66
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.34 E-value=1.6e-11 Score=93.80 Aligned_cols=93 Identities=18% Similarity=0.186 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------------hHHHHHHHHHHHHchhHHHHHHhHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---------------MKALIRRAEAHEKLEHFEEAIAGIQDLM 67 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 67 (125)
+..+..|.++|.++++.|+|++|+..|++++.++|.+ ..+|+++|.|+..+|+|++|+.+
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~----- 339 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC----- 339 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH-----
Confidence 5677899999999999999999999999999999998 69999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 68 IVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 68 ~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
|+++++++|++..++..++.++..+++..++..
T Consensus 340 --~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~ 372 (457)
T 1kt0_A 340 --CDKALGLDSANEKGLYRRGEAQLLMNEFESAKG 372 (457)
T ss_dssp --HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --HHHHHhcCCccHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999999988887766654
No 67
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.9e-11 Score=84.00 Aligned_cols=94 Identities=22% Similarity=0.226 Sum_probs=87.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.++.++|.++...|++++|+..+++++..+|.++.+++++|.++..+|++++|+.. ++++++.+|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~~~~~ 207 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD-------CNKAIEKDPNFV 207 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHhCHHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++..++..
T Consensus 208 ~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 208 RAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHH
Confidence 999999999988887765554
No 68
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.34 E-value=1.5e-11 Score=85.59 Aligned_cols=93 Identities=17% Similarity=0.174 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.+++++|.++...|++++|+..|++++.++|.++.+++.+|.++...|++++|+.. |+++++++|++..
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~al~~~~~~~~ 112 (275)
T 1xnf_A 40 DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA-------FDSVLELDPTYNY 112 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCTH
T ss_pred chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHH-------HHHHHhcCccccH
Confidence 567888999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 113 ~~~~la~~~~~~g~~~~A~~ 132 (275)
T 1xnf_A 113 AHLNRGIALYYGGRDKLAQD 132 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHH
Confidence 99999988887776665554
No 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.34 E-value=1.4e-11 Score=83.45 Aligned_cols=91 Identities=20% Similarity=0.150 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH---
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN--- 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~--- 81 (125)
.+.+|+++|.++...|++++|+..|++++.++|+++.+++++|.++..+|++++|+.. |++++++.|++.
T Consensus 36 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~~~~~~~~ 108 (213)
T 1hh8_A 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKD-------LKEALIQLRGNQLID 108 (213)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTTTCSEEE
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHH-------HHHHHHhCCCccHHH
Confidence 4678999999999999999999999999999999999999999999999999999999 999999888876
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 -------------QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 -------------~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++...+..
T Consensus 109 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 142 (213)
T 1hh8_A 109 YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE 142 (213)
T ss_dssp CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence 899999999988887766554
No 70
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.33 E-value=2.4e-11 Score=74.67 Aligned_cols=84 Identities=31% Similarity=0.409 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|....++.++|.++...|++++|+..+++++..+|.++..++.+|.++...|++++|... ++++++.+|++..
T Consensus 40 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~ 112 (125)
T 1na0_A 40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY-------YQKALELDPNNAE 112 (125)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCcHH
Confidence 445778999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHH
Q 033182 83 AKRTILRLQPL 93 (125)
Q Consensus 83 ~~~~l~~~~~~ 93 (125)
+...++.+...
T Consensus 113 ~~~~l~~~~~~ 123 (125)
T 1na0_A 113 AKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99888877643
No 71
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=1.4e-11 Score=76.45 Aligned_cols=92 Identities=20% Similarity=0.178 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc---
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--- 80 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--- 80 (125)
..+..++++|.++...|++++|+..+++++..+|.++.+++++|.++...|++++|+.. +++++++.|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~ 74 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCREL-------CEKAIEVGRENRED 74 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHHHSTTC
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHH-------HHHHHhhccccchh
Confidence 45778999999999999999999999999999999999999999999999999999999 99999988876
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 ----NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ----~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..++..++.++...++...+..
T Consensus 75 ~~~~~~~~~~la~~~~~~~~~~~A~~ 100 (131)
T 1elr_A 75 YRQIAKAYARIGNSYFKEEKYKDAIH 100 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 8888899998888777665554
No 72
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.32 E-value=1.2e-11 Score=82.03 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH-HHHchhH--HHHHHhHHHHHHHHHHHHhhCCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA-HEKLEHF--EEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~-~~~~~~~--~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
|..+.+|+.+|.++...|++++|+..|++++.++|+++.+++.+|.+ +...|++ ++|+.. ++++++.+|+
T Consensus 41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~-------~~~al~~~p~ 113 (177)
T 2e2e_A 41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAM-------IDKALALDSN 113 (177)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHH-------HHHHHHHCTT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHH-------HHHHHHhCCC
Confidence 55678999999999999999999999999999999999999999999 8899999 999999 9999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+..++..++.++...++..++..
T Consensus 114 ~~~~~~~la~~~~~~g~~~~A~~ 136 (177)
T 2e2e_A 114 EITALMLLASDAFMQANYAQAIE 136 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHH
Confidence 99999999999888877766554
No 73
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.32 E-value=1.6e-11 Score=76.25 Aligned_cols=87 Identities=18% Similarity=0.256 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY-------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
|..+.+++++|.++...|++++|+..+++++.++|.+ +.+++++|.++..+|++++|... |+++++
T Consensus 35 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~ 107 (131)
T 1elr_A 35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF-------YNKSLA 107 (131)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHH
T ss_pred CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH-------HHHHHH
Confidence 5567889999999999999999999999999999887 99999999999999999999999 999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHH
Q 033182 76 FDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 76 l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
++| ++.+...+..+...+++.
T Consensus 108 ~~~-~~~~~~~l~~~~~~~~~~ 128 (131)
T 1elr_A 108 EHR-TPDVLKKCQQAEKILKEQ 128 (131)
T ss_dssp HCC-CHHHHHHHHHHHHHHHHC
T ss_pred hCC-CHHHHHHHHHHHHHHHHh
Confidence 999 588888888887766543
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.29 E-value=2.8e-11 Score=92.67 Aligned_cols=94 Identities=16% Similarity=0.221 Sum_probs=87.9
Q ss_pred hhHHHHHHHHHHHHHHHh--------cCHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKL--------GKFEESIKECTKALELNP---TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~--------~~~~~A~~~~~~al~l~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 70 (125)
+|..+.+|+++|.++... |++++|+..|++++.++| .++.+|+++|.++..+|++++|+.. |
T Consensus 209 ~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~ 281 (474)
T 4abn_A 209 DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEG-------F 281 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHH-------H
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHH-------H
Confidence 466788999999999999 999999999999999999 9999999999999999999999999 9
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 71 KKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 71 ~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+++++++|++..++..++.+...+++..++..
T Consensus 282 ~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 282 SQAAALDPAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887766553
No 75
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.29 E-value=5.5e-11 Score=92.22 Aligned_cols=94 Identities=12% Similarity=0.018 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|....+|+++|.++...|++++|+..+++++.++|++..+++++|.++..+|++++|+.. |+++++++|++.
T Consensus 19 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~ 91 (568)
T 2vsy_A 19 RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL-------LQQASDAAPEHP 91 (568)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCH
Confidence 3556778888888888888888888888888888888888888888888888888888888 888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++..++..
T Consensus 92 ~~~~~la~~~~~~g~~~~A~~ 112 (568)
T 2vsy_A 92 GIALWLGHALEDAGQAEAAAA 112 (568)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 888888888877776655544
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=9.2e-11 Score=89.81 Aligned_cols=93 Identities=11% Similarity=0.046 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc---------hhHHHHHHhHHHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL---------EHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---------~~~~~A~~~~~~~~~~~~~ 72 (125)
+|..+.+|+++|.+|...|++++|+..|++++.++|+ ..++.++|.++..+ |++++|+.. |++
T Consensus 133 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~-------~~~ 204 (474)
T 4abn_A 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ-------AKL 204 (474)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH-------HHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHH-------HHH
Confidence 4667889999999999999999999999999999999 79999999999999 999999999 999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHH--------HHHHHHHH
Q 033182 73 ILEFDPSNNQAKRTILRLQPLA--------EEKLEKMK 102 (125)
Q Consensus 73 a~~l~p~~~~~~~~l~~~~~~~--------~~~~~~~~ 102 (125)
+++++|++..++..++.++... ++..++..
T Consensus 205 al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~ 242 (474)
T 4abn_A 205 AVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS 242 (474)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 9999999999999999999887 76665554
No 77
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.28 E-value=1.2e-10 Score=81.64 Aligned_cols=94 Identities=13% Similarity=0.091 Sum_probs=83.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
++..+..++++|..+++.|+|++|+..|++++..+|.+ +.+++.+|.++..+|+|++|+.. |++++++.|
T Consensus 11 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~-------~~~~l~~~p 83 (261)
T 3qky_A 11 RHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASE-------YERFIQIYQ 83 (261)
T ss_dssp CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCT
T ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHH-------HHHHHHHCC
Confidence 35567889999999999999999999999999999998 99999999999999999999999 999999988
Q ss_pred Cc---HHHHHHHHHHHHH--------HHHHHHHHH
Q 033182 79 SN---NQAKRTILRLQPL--------AEEKLEKMK 102 (125)
Q Consensus 79 ~~---~~~~~~l~~~~~~--------~~~~~~~~~ 102 (125)
++ ..++..++.++.. .++..++..
T Consensus 84 ~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~ 118 (261)
T 3qky_A 84 IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIE 118 (261)
T ss_dssp TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence 54 6678888888877 666665554
No 78
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.27 E-value=1.4e-11 Score=94.77 Aligned_cols=83 Identities=23% Similarity=0.434 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|+++|.++.++|++++|+..++++++++|+++.+++++|.++..+|++++|+.. |+++++++|++.
T Consensus 36 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~-------~~~al~~~p~~~ 108 (477)
T 1wao_1 36 NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRD-------YETVVKVKPHDK 108 (477)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHSTTCT
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCH
Confidence 3566788999999999999999999999999999999999999999999999999999999 999999999988
Q ss_pred HHHHHHHHHH
Q 033182 82 QAKRTILRLQ 91 (125)
Q Consensus 82 ~~~~~l~~~~ 91 (125)
.++..++.+.
T Consensus 109 ~~~~~l~~~~ 118 (477)
T 1wao_1 109 DAKMKYQECN 118 (477)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888773
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=2e-10 Score=74.95 Aligned_cols=87 Identities=14% Similarity=0.112 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.+.++..+|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|... ++++++.+|++..++
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~ 113 (186)
T 3as5_A 41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPL-------LIKVAEANPINFNVR 113 (186)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHhcCcHhHHHH
Confidence 3445555555555555555555555555555555555555555555555555555555 555555555555555
Q ss_pred HHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKL 98 (125)
Q Consensus 85 ~~l~~~~~~~~~~~ 98 (125)
..++.++...++..
T Consensus 114 ~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 114 FRLGVALDNLGRFD 127 (186)
T ss_dssp HHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcCcHH
Confidence 55555554444433
No 80
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.26 E-value=1.5e-10 Score=83.71 Aligned_cols=91 Identities=16% Similarity=0.195 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.+.++.++|.++...|++++|+..+++++.++|+++.+++++|.++...|++++|+.. |+++++++|++..++
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~~~~~~~~ 288 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAA-------YRRALELQPGYIRSR 288 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCcHHHH
Confidence 5788999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~ 102 (125)
..++.++...++..++..
T Consensus 289 ~~l~~~~~~~g~~~~A~~ 306 (368)
T 1fch_A 289 YNLGISCINLGAHREAVE 306 (368)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHH
Confidence 999999988887766655
No 81
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.26 E-value=3.5e-11 Score=87.56 Aligned_cols=91 Identities=18% Similarity=0.177 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.+.++.++|.++...|++++|+..+++++.++|+++.++.++|.++..+|++++|+.. |+++++++|++..++
T Consensus 212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~~ 284 (365)
T 4eqf_A 212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEA-------YTRALEIQPGFIRSR 284 (365)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCCchHHH
Confidence 6788999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~ 102 (125)
..++.++...++..++..
T Consensus 285 ~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 285 YNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHH
Confidence 999999988886665544
No 82
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.26 E-value=5.6e-11 Score=87.24 Aligned_cols=90 Identities=18% Similarity=0.256 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.++.++|.++...|++++|+..+++++.++|+++.++.++|.++...|++++|+.. |+++++++|++..
T Consensus 234 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~~ 306 (388)
T 1w3b_A 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC-------YNTALRLCPTHAD 306 (388)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCcccHH
Confidence 334555666666666666666666666666666666666666666666666666666666 6666666666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLE 99 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~ 99 (125)
++..++.++...++..+
T Consensus 307 ~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 307 SLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHcCCHHH
Confidence 66666655555444433
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=1.2e-11 Score=98.56 Aligned_cols=89 Identities=15% Similarity=0.067 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|....+++++|.++.++|++++|+..|+++++++|++..+|+++|.++..+|++++|+.. |+++++++|++..
T Consensus 430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~-------~~~al~l~P~~~~ 502 (681)
T 2pzi_A 430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKH-------FTEVLDTFPGELA 502 (681)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHSTTCSH
T ss_pred ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCChH
Confidence 445567777777777777777777777777777777777777777777777777777777 7777777777777
Q ss_pred HHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKL 98 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~ 98 (125)
++..++.++...++..
T Consensus 503 ~~~~lg~~~~~~g~~~ 518 (681)
T 2pzi_A 503 PKLALAATAELAGNTD 518 (681)
T ss_dssp HHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHcCChH
Confidence 7777777666655443
No 84
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.26 E-value=4.1e-11 Score=87.99 Aligned_cols=92 Identities=22% Similarity=0.283 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.+|.++|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|+.. |+++++.+|++..
T Consensus 64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~~ 136 (388)
T 1w3b_A 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA-------YVSALQYNPDLYC 136 (388)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHH-------HHHHHHHCTTCTH
T ss_pred CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCcHH
Confidence 445667777777777777777777777777777777777777777777777777777777 7777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~ 101 (125)
++..++.+....++..++.
T Consensus 137 ~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 137 VRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHH
Confidence 7766666666555444443
No 85
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.24 E-value=2e-10 Score=77.33 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=78.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.++..+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|... ++++++.+|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~a~~~~~~~~ 76 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQES-------FRQALSIKPDSA 76 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHH-------HHHHHHhCCCCh
Confidence 3567788888888888888888888888888888888888888888888888888888888 888888888888
Q ss_pred HHHHHHHHHHHHH-HHHHHHHH
Q 033182 82 QAKRTILRLQPLA-EEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~-~~~~~~~~ 102 (125)
.++..++.++... ++..++..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~ 98 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMA 98 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHH
Confidence 8888888887777 65554444
No 86
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.24 E-value=9.9e-12 Score=99.14 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=86.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|....+|+++|.++..+|++++|+..|+++++++|+++.+++++|.++..+|++++ +.. |+++++++|++.
T Consensus 463 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~-------~~~al~~~P~~~ 534 (681)
T 2pzi_A 463 VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKF-------YQTVWSTNDGVI 534 (681)
T ss_dssp HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCH-------HHHHHHHCTTCH
T ss_pred CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHH-------HHHHHHhCCchH
Confidence 466788999999999999999999999999999999999999999999999999999 999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++..++..
T Consensus 535 ~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 535 SAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 999999999988887766554
No 87
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.24 E-value=1.3e-10 Score=75.83 Aligned_cols=93 Identities=20% Similarity=0.280 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|....++.++|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|... ++++++.+|++..
T Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~ 145 (186)
T 3as5_A 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS-------FKIALGLRPNEGK 145 (186)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH-------HHHHHhcCccchH
Confidence 456788999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 146 ~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 99999999988876665554
No 88
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.24 E-value=2.3e-10 Score=81.85 Aligned_cols=85 Identities=27% Similarity=0.362 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
..++.++|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|... |+++++++|++..+..
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~-------~~~a~~~~p~~~~~~~ 344 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD-------YEAAQEHNENDQQIRE 344 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCCChHHHH
Confidence 356788999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHH
Q 033182 86 TILRLQPLAEEK 97 (125)
Q Consensus 86 ~l~~~~~~~~~~ 97 (125)
.+..+...+++.
T Consensus 345 ~l~~~~~~~~~~ 356 (359)
T 3ieg_A 345 GLEKAQRLLKQS 356 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999988777654
No 89
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.24 E-value=2.8e-10 Score=77.74 Aligned_cols=91 Identities=18% Similarity=0.070 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.++..+|.++...|++++|+..+++++..+|.+..+++.+|.++..+|++++|... ++++++.+|.+..
T Consensus 54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~ 126 (243)
T 2q7f_A 54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDM-------FEKALRAGMENGD 126 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHTCCSHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCCCHH
Confidence 344566666666666666666666666666666666666666666666666666666666 6666666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~ 100 (125)
++..++.++...++..++
T Consensus 127 ~~~~~a~~~~~~~~~~~A 144 (243)
T 2q7f_A 127 LFYMLGTVLVKLEQPKLA 144 (243)
T ss_dssp HHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHhccHHHH
Confidence 666666666555544443
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=3.8e-10 Score=69.72 Aligned_cols=87 Identities=29% Similarity=0.317 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
.+|+++|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|... ++++++.+|++..++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~~~ 74 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY-------YQKALELDPRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHH-------HHHHHHHCCCchHHHHH
Confidence 35667777777777777777777777777777777777777777777777777777 77777777777777666
Q ss_pred HHHHHHHHHHHHHH
Q 033182 87 ILRLQPLAEEKLEK 100 (125)
Q Consensus 87 l~~~~~~~~~~~~~ 100 (125)
++.+....++...+
T Consensus 75 l~~~~~~~~~~~~A 88 (136)
T 2fo7_A 75 LGNAYYKQGDYDEA 88 (136)
T ss_dssp HHHHHHTTTCHHHH
T ss_pred HHHHHHHhcCHHHH
Confidence 66666555544443
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.23 E-value=1.5e-10 Score=71.59 Aligned_cols=92 Identities=27% Similarity=0.303 Sum_probs=83.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|....++.++|.++...|++++|+..+++++..+|.++..++.+|.++...|++++|... ++++++..|.+..
T Consensus 32 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~ 104 (136)
T 2fo7_A 32 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEY-------YQKALELDPRSAE 104 (136)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCChH
Confidence 445678999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~ 101 (125)
++..++.++...++...+.
T Consensus 105 ~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 105 AWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHccHHHHH
Confidence 9999988887666555443
No 92
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.23 E-value=1e-10 Score=90.76 Aligned_cols=94 Identities=12% Similarity=-0.007 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.++.++|.++..+|++++|+..+++++.++|+++.+++++|.++..+|++++|+.. |+++++++|++.
T Consensus 53 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~~~ 125 (568)
T 2vsy_A 53 HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA-------YTRAHQLLPEEP 125 (568)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCH
Confidence 4667889999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHH---HHHHHHHH
Q 033182 82 QAKRTILRLQPLA---EEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~---~~~~~~~~ 102 (125)
.++..++.++... ++..++..
T Consensus 126 ~~~~~l~~~~~~~~~~g~~~~A~~ 149 (568)
T 2vsy_A 126 YITAQLLNWRRRLCDWRALDVLSA 149 (568)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHH
Confidence 9999999999888 65554443
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.21 E-value=5e-10 Score=80.39 Aligned_cols=99 Identities=10% Similarity=0.073 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHH------------------
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD------------------ 65 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~------------------ 65 (125)
.....+..+|..+...|++++|+..|++++..+|+++.+++.+|.++..+|++++|+..+++
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999987555
Q ss_pred ---------HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 66 ---------LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 66 ---------~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+...++++++.+|++..++..++.++...++..++..
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~ 240 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALE 240 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHH
Confidence 3455788889999999999999999888887766655
No 94
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.21 E-value=2.5e-10 Score=81.60 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
++..++.+|.+++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+.. ++++++++|++..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVIALKMDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhCCCcchHH
Confidence 4677889999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033182 85 RTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 85 ~~l~~~~~~~~~~~~~~~ 102 (125)
..++.++...++..++..
T Consensus 75 ~~l~~~~~~~~~~~~A~~ 92 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAED 92 (359)
T ss_dssp HHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHcCChHHHHH
Confidence 999988888876665554
No 95
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.20 E-value=4.5e-10 Score=76.72 Aligned_cols=93 Identities=13% Similarity=0.065 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|....++.++|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|... ++++++.+|++..
T Consensus 88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~ 160 (243)
T 2q7f_A 88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPY-------LQRAVELNENDTE 160 (243)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCccHH
Confidence 445677788888888888888888888888888888888888888888888888888888 8888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~ 180 (243)
T 2q7f_A 161 ARFQFGMCLANEGMLDEALS 180 (243)
T ss_dssp HHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 88777777776665544433
No 96
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.20 E-value=1.9e-10 Score=85.87 Aligned_cols=91 Identities=25% Similarity=0.275 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----------------cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALE----------------LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----------------l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 68 (125)
.+..+.++|..+++.|+|++|+..|++++. ++|.+..+++++|.++..+|+|++|+..
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~------ 295 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS------ 295 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH------
Confidence 456799999999999999999999999999 8889999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 69 VMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 69 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++++++++|++..++..++.++..+++..++..
T Consensus 296 -~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~ 328 (370)
T 1ihg_A 296 -CLEALEIDPSNTKALYRRAQGWQGLKEYDQALA 328 (370)
T ss_dssp -HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHH
Confidence 999999999999999999999988887766655
No 97
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.20 E-value=1.4e-10 Score=76.73 Aligned_cols=83 Identities=12% Similarity=0.156 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHHHH-HHHhcCH--HHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 2 AELRSICHSNRGIC-FLKLGKF--EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~-~~~~~~~--~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+|..+.++.++|.+ +...|++ ++|+..+++++..+|+++.+++.+|.++..+|++++|... |+++++++|
T Consensus 74 ~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p 146 (177)
T 2e2e_A 74 RGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIEL-------WQKVMDLNS 146 (177)
T ss_dssp HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHH-------HHHHHhhCC
Confidence 35567899999999 8899999 9999999999999999999999999999999999999999 999999999
Q ss_pred CcHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQ 91 (125)
Q Consensus 79 ~~~~~~~~l~~~~ 91 (125)
++......+..+.
T Consensus 147 ~~~~~~~~~~~i~ 159 (177)
T 2e2e_A 147 PRINRTQLVESIN 159 (177)
T ss_dssp TTSCHHHHHHHHH
T ss_pred CCccHHHHHHHHH
Confidence 9876655555444
No 98
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.19 E-value=4.7e-10 Score=76.98 Aligned_cols=90 Identities=14% Similarity=0.183 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--------------------------cCCCChHHHHHHHHHHHHchhHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALE--------------------------LNPTYMKALIRRAEAHEKLEHFEEA 59 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--------------------------l~p~~~~~~~~~~~~~~~~~~~~~A 59 (125)
+.++.++|.++...|++++|+..+++++. .+|.++.+++.+|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 78999999999999999999999999999 7788899999999999999999999
Q ss_pred HHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 60 IAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 60 ~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+.. ++++++.+|++..++..++.++...++..++..
T Consensus 159 ~~~-------~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 159 VKA-------YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHH-------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHH-------HHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 999 999999999999999999999988887766655
No 99
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.19 E-value=2.1e-11 Score=76.28 Aligned_cols=78 Identities=10% Similarity=0.053 Sum_probs=69.1
Q ss_pred HhcCHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHH
Q 033182 18 KLGKFEESIKECTKALEL---NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLA 94 (125)
Q Consensus 18 ~~~~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~ 94 (125)
.+|++++|+..|++++.+ +|+++.+++++|.++..+|++++|+.. |+++++++|++..++..++.++...
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAV-------LANGVKQFPNHQALRVFYAMVLYNL 74 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCchHHHHHHHHHHHHc
Confidence 468999999999999999 699999999999999999999999999 9999999999999999999999998
Q ss_pred HHHHHHHH
Q 033182 95 EEKLEKMK 102 (125)
Q Consensus 95 ~~~~~~~~ 102 (125)
++..++..
T Consensus 75 g~~~~A~~ 82 (117)
T 3k9i_A 75 GRYEQGVE 82 (117)
T ss_dssp TCHHHHHH
T ss_pred CCHHHHHH
Confidence 88776665
No 100
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.19 E-value=6.5e-11 Score=85.69 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=85.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN-- 80 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~-- 80 (125)
|..+.++.++|.++...|++++|+..+++++.++|+++.+++++|.++..+|++++|... |+++++++|++
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~~~~~~ 320 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEH-------FLEALNMQRKSRG 320 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHHTC--
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHhCCCCCC
Confidence 556789999999999999999999999999999999999999999999999999999999 99999999988
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 ---------NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ---------~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..++..++.++..+++...+..
T Consensus 321 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 321 PRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred ccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 8899999999988886655543
No 101
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.19 E-value=1.2e-10 Score=88.17 Aligned_cols=92 Identities=22% Similarity=0.191 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
..+..|..+|..+.+.|+|++|+..|++++..+|+++.+++++|.++..+|++++|+.. |+++++++|++..+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~ 95 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEF-------TTKALEIKPDHSKA 95 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCchHHH
Confidence 35688999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
+..++.++...++..++..
T Consensus 96 ~~~la~~~~~~g~~~~A~~ 114 (537)
T 3fp2_A 96 LLRRASANESLGNFTDAMF 114 (537)
T ss_dssp HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 9999999988887766654
No 102
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.18 E-value=4.1e-10 Score=77.70 Aligned_cols=90 Identities=19% Similarity=0.110 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
+.+|+.+|.++...|++++|+..+++++..+|.++.+++.+|.++...|++++|... ++++++.+|++..++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEE-------YRKALASDSRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHCcCcHHHHH
Confidence 667777777777777777777777777777777777777777777777777777777 7777777777777777
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 86 TILRLQPLAEEKLEKMK 102 (125)
Q Consensus 86 ~l~~~~~~~~~~~~~~~ 102 (125)
.++.++...++..++..
T Consensus 110 ~la~~~~~~g~~~~A~~ 126 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQ 126 (252)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhHHHHHHH
Confidence 77777766665554443
No 103
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.18 E-value=1.1e-10 Score=83.69 Aligned_cols=72 Identities=26% Similarity=0.537 Sum_probs=68.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
+|..+.+|+++|.+|..+|++++|+..+++++.++|++..+++++|.++..+|++++|+.. |+++++++|++
T Consensus 34 ~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~l~p~~ 105 (281)
T 2c2l_A 34 NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIAN-------LQRAYSLAKEQ 105 (281)
T ss_dssp CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCccc
Confidence 3567889999999999999999999999999999999999999999999999999999999 99999988865
No 104
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.18 E-value=5.9e-10 Score=74.58 Aligned_cols=72 Identities=22% Similarity=0.251 Sum_probs=66.1
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHH----------HHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 17 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFE----------EAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 17 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~----------~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
-+.+.|++|+..++++++++|+++.+|+++|.++..+++++ +|+.. |+++++++|++.+++..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~-------le~AL~ldP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITK-------FEEALLIDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-------HHHHHHHCTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHH-------HHHHHHhCcCcHHHHHH
Confidence 46788999999999999999999999999999999998864 77777 99999999999999999
Q ss_pred HHHHHHHHH
Q 033182 87 ILRLQPLAE 95 (125)
Q Consensus 87 l~~~~~~~~ 95 (125)
++.++..++
T Consensus 86 LG~ay~~lg 94 (158)
T 1zu2_A 86 IGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 999998764
No 105
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.18 E-value=9e-10 Score=78.02 Aligned_cols=93 Identities=12% Similarity=0.136 Sum_probs=86.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.++..+|.++...|++++|+..+++++..+|+++.++..+|.++...|++++|+.. ++++++.+|++..
T Consensus 169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~a~~~~~~~~~ 241 (327)
T 3cv0_A 169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDA-------YNRALDINPGYVR 241 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCCCCHH
Confidence 446788999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 242 ~~~~l~~~~~~~g~~~~A~~ 261 (327)
T 3cv0_A 242 VMYNMAVSYSNMSQYDLAAK 261 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHH
Confidence 99999999988877766554
No 106
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=6.6e-10 Score=77.81 Aligned_cols=84 Identities=15% Similarity=0.171 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHhcCCCChHHH-----------------HHHHHHHHHchhHHH
Q 033182 4 LRSICHSNRGICFLK--------LGKFEESIKECTKALELNPTYMKAL-----------------IRRAEAHEKLEHFEE 58 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~--------~~~~~~A~~~~~~al~l~p~~~~~~-----------------~~~~~~~~~~~~~~~ 58 (125)
..+.+++++|.++.. .|++++|+..|++++..+|++..+. +.+|.++...|++++
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 166 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEA 166 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHH
Confidence 456789999999999 9999999999999999999887666 899999999999999
Q ss_pred HHHhHHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHH
Q 033182 59 AIAGIQDLMIVMKKILEFDPS---NNQAKRTILRLQPLA 94 (125)
Q Consensus 59 A~~~~~~~~~~~~~a~~l~p~---~~~~~~~l~~~~~~~ 94 (125)
|+.. |+++++..|+ ...++..++.++..+
T Consensus 167 A~~~-------~~~~l~~~p~~~~~~~a~~~l~~~~~~~ 198 (261)
T 3qky_A 167 AAVT-------YEAVFDAYPDTPWADDALVGAMRAYIAY 198 (261)
T ss_dssp HHHH-------HHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence 9999 9999999998 567888999888776
No 107
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.17 E-value=3.2e-10 Score=84.16 Aligned_cols=94 Identities=16% Similarity=0.159 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+..++.+|.++.+.|++++|+..|++++..+|.++.+++.+|.++..+|++++|+.. |+++++++|++.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~p~~~ 94 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPD-------LTKVIQLKMDFT 94 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCcH
Confidence 4677888999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++..++..
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~ 115 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAED 115 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHH
Confidence 999999998888776665544
No 108
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.17 E-value=3.8e-11 Score=92.32 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=86.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+..+..+.++|.++.+.|+|++|+..|+++++++|+++.+++++|.++..+|++++|+.. ++++++++|++..
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~l~p~~~~ 75 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGD-------ATRAIELDKKYIK 75 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHSCTTCHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCCCCHH
Confidence 345667888999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++..+++..++..
T Consensus 76 ~~~~lg~~~~~~g~~~eA~~ 95 (477)
T 1wao_1 76 GYYRRAASNMALGKFRAALR 95 (477)
T ss_dssp HHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHH
Confidence 99999999999888776665
No 109
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.17 E-value=3e-10 Score=82.56 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
...++++|.++.+.|++++|+..|++++..+|+++.+++.+|.++..+|++++|+.. |+++++++|++..++.
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~~~ 137 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVA-------LQRCLELQPNNLKALM 137 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCHHHHH
Confidence 445899999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 86 TILRLQPLAEEKLEKMK 102 (125)
Q Consensus 86 ~l~~~~~~~~~~~~~~~ 102 (125)
.++.++...++..++..
T Consensus 138 ~l~~~~~~~g~~~~A~~ 154 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACE 154 (365)
T ss_dssp HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHccccHHHHHH
Confidence 99999988877665554
No 110
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.17 E-value=8.7e-11 Score=71.05 Aligned_cols=71 Identities=13% Similarity=0.074 Sum_probs=67.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT--YMKALIRRAEAHEKL-EHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
|....++.++|.++...|++++|+..+++++..+|. +..+++++|.++..+ |++++|+.. +++++..+|+
T Consensus 37 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~-------~~~~~~~~p~ 109 (112)
T 2kck_A 37 PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIA-------EARAKLEHHH 109 (112)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHH-------HHHHGGGCCC
T ss_pred cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHhhcccC
Confidence 456778999999999999999999999999999999 999999999999999 999999999 9999999997
Q ss_pred c
Q 033182 80 N 80 (125)
Q Consensus 80 ~ 80 (125)
+
T Consensus 110 ~ 110 (112)
T 2kck_A 110 H 110 (112)
T ss_dssp C
T ss_pred C
Confidence 5
No 111
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.16 E-value=4.5e-10 Score=79.70 Aligned_cols=91 Identities=18% Similarity=0.103 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 3 ELRSICHSNRGICFLKLG-KFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
|..+.+|+.+|.++...| ++++|+..+++++.++|.++.+++.+|.++...|++++|+.. ++++++..|++.
T Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~a~~~~~~~~ 159 (330)
T 3hym_B 87 PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAA-------YFTAAQLMKGCH 159 (330)
T ss_dssp TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHTTTCS
T ss_pred cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhccccH
Confidence 334555666666666666 566666666666666666666666666666666666666666 666666666655
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~ 100 (125)
.++..++.++...++..++
T Consensus 160 ~~~~~l~~~~~~~~~~~~A 178 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLA 178 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 5555555555555444333
No 112
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.16 E-value=4.6e-10 Score=78.12 Aligned_cols=80 Identities=15% Similarity=0.073 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
+.+|.++|.++...|++++|+..+++++.++|.++.++..+|.++..+|++++|+.. |+++++++|.+..++.
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~~~~~~~~~ 146 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQY-------MEKQIRPTTTDPKVFY 146 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH-------HGGGCCSSCCCHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHH-------HHHHhhcCCCcHHHHH
Confidence 456788888888888888888888888888888888888888888888888888888 8888888888888887
Q ss_pred HHH-HHHH
Q 033182 86 TIL-RLQP 92 (125)
Q Consensus 86 ~l~-~~~~ 92 (125)
.++ .++.
T Consensus 147 ~l~~~~~~ 154 (272)
T 3u4t_A 147 ELGQAYYY 154 (272)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 777 5443
No 113
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.15 E-value=6.2e-10 Score=76.77 Aligned_cols=89 Identities=19% Similarity=0.117 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
....++.++|.++...|++++|+..+++++..+|.++.+++.+|.++..+|++++|... ++++++.+|++..+
T Consensus 139 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~~~~~~~~~~~~ 211 (252)
T 2ho1_A 139 ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY-------YDLFAQGGGQNARS 211 (252)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTSCCCHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCcCcHHH
Confidence 34455556666666666666666666666666666666666666666666666666666 66666666666555
Q ss_pred HHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLE 99 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~ 99 (125)
+..+..++...++..+
T Consensus 212 ~~~~~~~~~~~g~~~~ 227 (252)
T 2ho1_A 212 LLLGIRLAKVFEDRDT 227 (252)
T ss_dssp HHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHccCHHH
Confidence 5555555554444433
No 114
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.15 E-value=3.7e-10 Score=80.12 Aligned_cols=94 Identities=10% Similarity=-0.029 Sum_probs=87.2
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.+|.++|.++...|++++|+..+++++..+|.+..+++.+|.++...|++++|... ++++++.+|++.
T Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~~~~~ 193 (330)
T 3hym_B 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERF-------FSQALSIAPEDP 193 (330)
T ss_dssp CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTCTTCH
T ss_pred CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHH-------HHHHHHhCCCCh
Confidence 4566788999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++..++..
T Consensus 194 ~~~~~l~~~~~~~~~~~~A~~ 214 (330)
T 3hym_B 194 FVMHEVGVVAFQNGEWKTAEK 214 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHH
Confidence 999999999988877666554
No 115
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=99.15 E-value=1.1e-09 Score=67.84 Aligned_cols=83 Identities=16% Similarity=0.086 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELN-------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
.+.-++.+|..+++.++|..|+.+++.++... +..+..+..+|.++.++|+++.|+.. ++++++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~-------~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLL-------TKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHH-------HHHHHhcC
Confidence 35567899999999999999999999999863 45688999999999999999999999 99999999
Q ss_pred CCcHHHHHHHHHHHHHH
Q 033182 78 PSNNQAKRTILRLQPLA 94 (125)
Q Consensus 78 p~~~~~~~~l~~~~~~~ 94 (125)
|++..+...+..+...+
T Consensus 77 P~~~~~~~n~~~~~~~~ 93 (104)
T 2v5f_A 77 PEHQRANGNLKYFEYIM 93 (104)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHhhHHHHHHHH
Confidence 99999988877554443
No 116
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.14 E-value=6.7e-10 Score=77.15 Aligned_cols=81 Identities=20% Similarity=0.168 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.+|.++|.++...|++++|+..+++++.++|.++.+++.+|.++..+|++++|+.. ++++++++|++..
T Consensus 74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~a~~~~~~~~~ 146 (275)
T 1xnf_A 74 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDD-------LLAFYQDDPNDPF 146 (275)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCCChH
Confidence 556789999999999999999999999999999999999999999999999999999999 9999999999987
Q ss_pred HHHHHHHH
Q 033182 83 AKRTILRL 90 (125)
Q Consensus 83 ~~~~l~~~ 90 (125)
....+..+
T Consensus 147 ~~~~~~~~ 154 (275)
T 1xnf_A 147 RSLWLYLA 154 (275)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66555443
No 117
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=99.14 E-value=3.1e-10 Score=75.45 Aligned_cols=85 Identities=16% Similarity=0.219 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcC-C-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 4 LRSICHSNRGICFLKLG---KFEESIKECTKALELN-P-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~l~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
......++.|+++.+.+ ++.+++..++.+++.+ | ++.+++|++|..++++|+|++|.++ ++++++.+|
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y-------~~~lL~ieP 102 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY-------VRGLLQTEP 102 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH-------HHHHHHHCT
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH-------HHHHHhcCC
Confidence 35678899999999988 6779999999999999 7 6799999999999999999999999 999999999
Q ss_pred CcHHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLAE 95 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~~ 95 (125)
+|..+......+.+.+.
T Consensus 103 ~n~QA~~Lk~~ie~~~~ 119 (152)
T 1pc2_A 103 QNNQAKELERLIDKAMK 119 (152)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999888777765553
No 118
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.14 E-value=1.2e-09 Score=73.42 Aligned_cols=87 Identities=13% Similarity=-0.025 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHHHHHHh--hCCCcH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKL-EHFEEAIAGIQDLMIVMKKILE--FDPSNN 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~a~~--l~p~~~ 81 (125)
.+.++..+|.++...|++++|+..+++++..+|.+..+++.+|.++... |++++|+.. ++++++ .+|.+.
T Consensus 41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~-------~~~~~~~~~~~~~~ 113 (225)
T 2vq2_A 41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAY-------FDKALADPTYPTPY 113 (225)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHH-------HHHHHTSTTCSCHH
T ss_pred chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHH-------HHHHHcCcCCcchH
Confidence 3445555555555555555555555555555555555555555555555 555555555 555555 344444
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKL 98 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~ 98 (125)
.++..++.++...++..
T Consensus 114 ~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 114 IANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHcCCHH
Confidence 55555555544444333
No 119
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.13 E-value=3.9e-10 Score=79.93 Aligned_cols=93 Identities=11% Similarity=0.135 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC---
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS--- 79 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~--- 79 (125)
|..+.++.++|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|... ++++++++|+
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~a~~~~~~~~~ 275 (327)
T 3cv0_A 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQ-------LVRAIYMQVGGTT 275 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHTTSCC
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCCcccc
Confidence 556788999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred ---------cHHHHHHHHHHHHHHHHHHHHHH
Q 033182 80 ---------NNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 80 ---------~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+..++..++.++...++...+..
T Consensus 276 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 307 (327)
T 3cv0_A 276 PTGEASREATRSMWDFFRMLLNVMNRPDLVEL 307 (327)
T ss_dssp -----CCTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccchhhcCHHHHHHHHHHHHhcCCHHHHHH
Confidence 78899999999888877665543
No 120
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.13 E-value=1e-10 Score=86.14 Aligned_cols=93 Identities=16% Similarity=0.090 Sum_probs=85.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-----------------HHHHHHHHHHHHchhHHHHHHhHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM-----------------KALIRRAEAHEKLEHFEEAIAGIQD 65 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~ 65 (125)
+..+..+.++|.++++.|+|++|+..|++++.++|.+. .+|+++|.++..+|+|++|+..
T Consensus 176 ~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~--- 252 (338)
T 2if4_A 176 IGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH--- 252 (338)
T ss_dssp HHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 34677899999999999999999999999999999887 4999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 66 LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 66 ~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
|+++++++|++..++..++.++..+++..++..
T Consensus 253 ----~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 253 ----CNIVLTEEEKNPKALFRRGKAKAELGQMDSARD 285 (338)
T ss_dssp ----HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred ----HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999999999988887766654
No 121
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.13 E-value=5.2e-10 Score=68.41 Aligned_cols=74 Identities=23% Similarity=0.172 Sum_probs=67.5
Q ss_pred hhHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 2 AELRSICHSNRGICFLKLGK---FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+|.++.++..+|.+++..++ .++|...+++++.+||+++++++.+|..+...|+|++|+.. |+++++.+|
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~-------w~~~l~~~p 74 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDT-------WVLLLDSND 74 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCC
Confidence 35678899999999987666 79999999999999999999999999999999999999999 999999999
Q ss_pred CcHH
Q 033182 79 SNNQ 82 (125)
Q Consensus 79 ~~~~ 82 (125)
..+.
T Consensus 75 ~~~~ 78 (93)
T 3bee_A 75 PNLD 78 (93)
T ss_dssp TTCC
T ss_pred CCcc
Confidence 8433
No 122
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.12 E-value=7.8e-10 Score=82.99 Aligned_cols=92 Identities=15% Similarity=0.148 Sum_probs=83.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
...+..+..+|.++++.|+|++|+..|++++..+| ++.+++.+|.++..+|++++|+.. ++++++++|++..
T Consensus 3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~p~~~~ 74 (514)
T 2gw1_A 3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEM-------STKALELKPDYSK 74 (514)
T ss_dssp HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCSCCHH
T ss_pred chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHH-------HHHHhccChHHHH
Confidence 34678899999999999999999999999999999 699999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 75 ~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 75 VLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHH
Confidence 99999999988887766554
No 123
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.12 E-value=1.2e-10 Score=77.59 Aligned_cols=100 Identities=10% Similarity=0.036 Sum_probs=70.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHH-----------------
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD----------------- 65 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~----------------- 65 (125)
+.....+..+|..+...|++++|+..|++++..+|+++.+++++|.++..+|++++|+..+++
T Consensus 3 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~ 82 (176)
T 2r5s_A 3 ASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL 82 (176)
T ss_dssp ---CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence 344456778888888888888888888888888888888888888888888888888876211
Q ss_pred ----------HHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 66 ----------LMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 66 ----------~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+...++++++++|++..++..++.++...++..++..
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~ 129 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALE 129 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHH
Confidence 1333555566666666666666666666555544443
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.11 E-value=6.7e-10 Score=75.00 Aligned_cols=91 Identities=13% Similarity=0.053 Sum_probs=82.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.......++++|.++...|+|++|+..|++++ +| ++.+++++|.++..+|++++|+.. |+++++++|++.
T Consensus 2 s~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~~~~~ 71 (213)
T 1hh8_A 2 SLVEAISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKA-------FTRSINRDKHLA 71 (213)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCH
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCccch
Confidence 34567789999999999999999999999995 44 789999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++..++..
T Consensus 72 ~~~~~lg~~~~~~~~~~~A~~ 92 (213)
T 1hh8_A 72 VAYFQRGMLYYQTEKYDLAIK 92 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHH
Confidence 999999999988887766655
No 125
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.11 E-value=1.5e-09 Score=80.59 Aligned_cols=84 Identities=27% Similarity=0.371 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
..++.++|.++.+.|++++|+..+++++.++|+++.+++.+|.++...|++++|+.. |+++++++|++..++.
T Consensus 295 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~al~~~p~~~~~~~ 367 (450)
T 2y4t_A 295 VRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQD-------YETAQEHNENDQQIRE 367 (450)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTSSSCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHhCcchHHHHH
Confidence 458999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHH
Q 033182 86 TILRLQPLAEE 96 (125)
Q Consensus 86 ~l~~~~~~~~~ 96 (125)
.++.+....+.
T Consensus 368 ~l~~~~~~~~~ 378 (450)
T 2y4t_A 368 GLEKAQRLLKQ 378 (450)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhc
Confidence 99977665543
No 126
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.10 E-value=2e-09 Score=74.28 Aligned_cols=82 Identities=11% Similarity=-0.004 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.+..++++|..+++.|+|++|+..|++++...|.+ ..+++.+|.++..+|+|++|+.. |+++++.+|++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~-------~~~~l~~~P~~~ 75 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAA-------IDRFIRLNPTHP 75 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCT
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHHCcCCC
Confidence 35679999999999999999999999999999876 47999999999999999999999 999999999986
Q ss_pred H---HHHHHHHHHHH
Q 033182 82 Q---AKRTILRLQPL 93 (125)
Q Consensus 82 ~---~~~~l~~~~~~ 93 (125)
. ++..++.++..
T Consensus 76 ~~~~a~~~~g~~~~~ 90 (225)
T 2yhc_A 76 NIDYVMYMRGLTNMA 90 (225)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHh
Confidence 5 67777776654
No 127
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.10 E-value=9.6e-10 Score=73.09 Aligned_cols=92 Identities=17% Similarity=0.208 Sum_probs=72.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHH----------------------------------HHHHHHhcCCCChHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIK----------------------------------ECTKALELNPTYMKALIRRA 47 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~----------------------------------~~~~al~l~p~~~~~~~~~~ 47 (125)
+|..+.+++++|.++...|++++|+. .+++++.++|+++.+++++|
T Consensus 36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la 115 (176)
T 2r5s_A 36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELA 115 (176)
T ss_dssp HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHH
Confidence 35566677777777777776665544 44555667899999999999
Q ss_pred HHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHHHHHH
Q 033182 48 EAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--NQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~~~~~ 100 (125)
.++...|++++|+.. |+++++.+|++ ..++..++.+....++..+.
T Consensus 116 ~~~~~~g~~~~A~~~-------~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A 163 (176)
T 2r5s_A 116 VQYNQVGRDEEALEL-------LWNILKVNLGAQDGEVKKTFMDILSALGQGNAI 163 (176)
T ss_dssp HHHHHTTCHHHHHHH-------HHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHcccHHHHHHH-------HHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence 999999999999999 99999999986 55899999888877655433
No 128
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.09 E-value=5.9e-10 Score=80.38 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHH-HHhHHHHHHHHHHHHhhCCCcH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA-IAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
|..+.+|+++|.++.++|++++|+..+++++.++|+++.+++++|.++..+|+++++ ... ++++++++|+++
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~-------~~~~~~~~P~~~ 269 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY-------LSQLKDAHRSHP 269 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHCTTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH-------HHHHHHhCCCCh
Confidence 345566777777777777777777777777777777777777777777777777553 456 667777777766
Q ss_pred HHH
Q 033182 82 QAK 84 (125)
Q Consensus 82 ~~~ 84 (125)
.+.
T Consensus 270 ~~~ 272 (291)
T 3mkr_A 270 FIK 272 (291)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 129
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.09 E-value=2.7e-10 Score=79.30 Aligned_cols=92 Identities=11% Similarity=0.038 Sum_probs=70.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
|..+.++.++|.++...|++++|+..+++++. .|.+ ..+++.+|.++..+|++++|+.. |+++++++|
T Consensus 34 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~a~~~~~ 105 (272)
T 3u4t_A 34 YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQ-------YQAAVDRDT 105 (272)
T ss_dssp CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHST
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHH-------HHHHHhcCc
Confidence 44556778888888888888888888888887 3333 44578888888888888888888 888888888
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++..++.++...++..++..
T Consensus 106 ~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 106 TRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHH
Confidence 888888888888877776655543
No 130
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.06 E-value=8.6e-10 Score=83.46 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=83.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
|..+.++.++|.++...|++++|+..+++++..+|+++.+++.+|.++..+|++++|+.. ++++++.+|++..
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~~~~~~~~~~~ 379 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAF-------FNETKLKFPTLPE 379 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCTH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCChH
Confidence 556788999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
++..++.++...++..++..
T Consensus 380 ~~~~l~~~~~~~g~~~~A~~ 399 (537)
T 3fp2_A 380 VPTFFAEILTDRGDFDTAIK 399 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHH
Confidence 99999998887776665554
No 131
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.04 E-value=1e-09 Score=78.74 Aligned_cols=90 Identities=13% Similarity=0.065 Sum_probs=76.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHH----------------------------------HHHHHHHhcCCCChHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESI----------------------------------KECTKALELNPTYMKALIRRA 47 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~----------------------------------~~~~~al~l~p~~~~~~~~~~ 47 (125)
+|..+.+++++|.++...|++++|+ ..+++++..+|+++.+++++|
T Consensus 147 ~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la 226 (287)
T 3qou_A 147 SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLA 226 (287)
T ss_dssp TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHH
Confidence 4556777888888888888777765 445556778999999999999
Q ss_pred HHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHHHHHH
Q 033182 48 EAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN--NQAKRTILRLQPLAEEKL 98 (125)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~--~~~~~~l~~~~~~~~~~~ 98 (125)
.++...|++++|+.. |+++++.+|++ ..++..+..+...+++..
T Consensus 227 ~~l~~~g~~~~A~~~-------l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 227 LQLHQVGRNEEALEL-------LFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHTTCHHHHHHH-------HHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHHHcccHHHHHHH-------HHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 999999999999999 99999999998 889999999988877543
No 132
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.04 E-value=8.1e-09 Score=71.16 Aligned_cols=74 Identities=12% Similarity=0.134 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH---HHHHHHHHHHH------------------chhHHHHHHhH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMK---ALIRRAEAHEK------------------LEHFEEAIAGI 63 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~---~~~~~~~~~~~------------------~~~~~~A~~~~ 63 (125)
...+++++|.++.+.|+|++|+..|++++..+|++.. +++.+|.++.. +|++++|+..
T Consensus 40 ~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~- 118 (225)
T 2yhc_A 40 SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD- 118 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH-
Confidence 3578999999999999999999999999999998864 89999999986 6899999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHH
Q 033182 64 QDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 64 ~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
|+++++..|+++.+..
T Consensus 119 ------~~~~l~~~P~~~~a~~ 134 (225)
T 2yhc_A 119 ------FSKLVRGYPNSQYTTD 134 (225)
T ss_dssp ------HHHHHTTCTTCTTHHH
T ss_pred ------HHHHHHHCcCChhHHH
Confidence 9999999999876553
No 133
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.03 E-value=1.1e-09 Score=75.73 Aligned_cols=93 Identities=22% Similarity=0.238 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
+....++.++|.++...|++++|+..+++++.+ +|....++.++|.++..+|++++|... +++++
T Consensus 82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al 154 (283)
T 3edt_B 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYY-------YRRAL 154 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH-------HHHHH
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHH
Confidence 567889999999999999999999999999998 578899999999999999999999999 66666
Q ss_pred hh--------CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 75 EF--------DPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 75 ~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++ +|....++..++.++...++..++..
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66 66677888899999888887766554
No 134
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.02 E-value=3.4e-09 Score=81.40 Aligned_cols=93 Identities=14% Similarity=0.161 Sum_probs=81.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCC-hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL------NPTY-MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
|..+.+|.++|.++.+.|++++|+..|++++.. +|++ ..+|..+|.++...|++++|... ++++++
T Consensus 472 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~~~~ 544 (597)
T 2xpi_A 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA-------LNQGLL 544 (597)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHH
Confidence 345678899999999999999999999999888 6664 78999999999999999999999 999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 76 FDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 76 l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++|++..++..++.++...++..++..
T Consensus 545 ~~p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 545 LSTNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999988887776665
No 135
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.99 E-value=4.6e-09 Score=64.90 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 24 ESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 24 ~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.|+..|++++..+|+++.+++++|.++...|++++|+.. |+++++++|++..++..++.++...++..++..
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPH-------LRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 578899999999999999999999999999999999999 999999999999999999999988887766654
No 136
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.98 E-value=5.4e-09 Score=75.21 Aligned_cols=92 Identities=12% Similarity=0.095 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHHH-------hcCH-------HHHHHHHHHHHh-cCCCChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182 2 AELRSICHSNRGICFLK-------LGKF-------EESIKECTKALE-LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-------~~~~-------~~A~~~~~~al~-l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 66 (125)
+|..+.+|+++|..+.. .|++ ++|...|++++. ++|++..+|..+|..+...|++++|...
T Consensus 46 ~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~---- 121 (308)
T 2ond_A 46 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI---- 121 (308)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH----
Confidence 46677888888888764 4775 889999999998 6898888999999999999999999888
Q ss_pred HHHHHHHHhhCCCcHH-HHHHHHHHHHHHHHHHHH
Q 033182 67 MIVMKKILEFDPSNNQ-AKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 67 ~~~~~~a~~l~p~~~~-~~~~l~~~~~~~~~~~~~ 100 (125)
|+++++++|++.. ++..++.+....++..++
T Consensus 122 ---~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A 153 (308)
T 2ond_A 122 ---YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG 153 (308)
T ss_dssp ---HHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHH
T ss_pred ---HHHHHhccccCccHHHHHHHHHHHHhcCHHHH
Confidence 8888888888876 788888777666655444
No 137
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.98 E-value=8.1e-09 Score=79.28 Aligned_cols=92 Identities=14% Similarity=0.116 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQA 83 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~ 83 (125)
....+|..+|.+|.+.|++++|+..|++++.++|.+..+|..+|.++...|++++|+.. |+++++..|++..+
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~~~~~~~~~~~~ 443 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA-------YTTAARLFQGTHLP 443 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHTTTTCSHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCccchHH
Confidence 34566677777777777777777777777777777777777777777777777777777 77777777777666
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 033182 84 KRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~ 102 (125)
+..++.++...++..++..
T Consensus 444 ~~~l~~~~~~~g~~~~A~~ 462 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANE 462 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 6666666666555544433
No 138
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.96 E-value=6.6e-09 Score=71.82 Aligned_cols=100 Identities=15% Similarity=0.098 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
+..+.++.++|.++...|++++|+..+++++.+ +|..+.++.++|.++..+|++++|+..+++++.++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 667889999999999999999999999999988 477789999999999999999999999444444443332
Q ss_pred hh-CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 75 EF-DPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 75 ~l-~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.. +|....++..++.++...++..++..
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 148 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEY 148 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 22 46677788888888877776655544
No 139
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.92 E-value=2.4e-08 Score=71.77 Aligned_cols=80 Identities=11% Similarity=-0.042 Sum_probs=69.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMK-ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
+|....+|.++|..+...|++++|...|++++.++|.++. +|.++|.++...|++++|... |+++++.+|.+
T Consensus 95 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~a~~~~p~~ 167 (308)
T 2ond_A 95 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI-------FKKAREDARTR 167 (308)
T ss_dssp TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH-------HHHHHTSTTCC
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHH-------HHHHHhcCCCC
Confidence 5667789999999999999999999999999999999987 999999999999999999999 88888888877
Q ss_pred HHHHHHHH
Q 033182 81 NQAKRTIL 88 (125)
Q Consensus 81 ~~~~~~l~ 88 (125)
..++....
T Consensus 168 ~~~~~~~a 175 (308)
T 2ond_A 168 HHVYVTAA 175 (308)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 66554433
No 140
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.92 E-value=2.7e-08 Score=71.64 Aligned_cols=74 Identities=14% Similarity=0.104 Sum_probs=62.4
Q ss_pred hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHH
Q 033182 19 LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKL 98 (125)
Q Consensus 19 ~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~ 98 (125)
.|++++|+..|++++..+|+++.+++++|.++..+|++++|... |+++++++|++++++..++.+....++..
T Consensus 179 ~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~-------l~~al~~~p~~~~~l~~l~~~~~~~g~~~ 251 (291)
T 3mkr_A 179 GEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGV-------LQEALDKDSGHPETLINLVVLSQHLGKPP 251 (291)
T ss_dssp TTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred chHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence 47788888888888888888888888899999999999999999 88888999999998888888887777654
Q ss_pred H
Q 033182 99 E 99 (125)
Q Consensus 99 ~ 99 (125)
+
T Consensus 252 e 252 (291)
T 3mkr_A 252 E 252 (291)
T ss_dssp H
T ss_pred H
Confidence 3
No 141
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=4.2e-09 Score=75.47 Aligned_cols=91 Identities=14% Similarity=0.118 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKL-EHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
.+.+|.++|.+|..+|++++|+..|++++.+.|.. +.++.++|.+|... |++++|+.. |++++++.
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~-------~~~Al~~~ 148 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC-------YELAGEWY 148 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH-------HHHHHHHH
Confidence 36789999999999999999999999999998754 56899999999996 999999999 88888887
Q ss_pred CCc------HHHHHHHHHHHHHHHHHHHHHH
Q 033182 78 PSN------NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 78 p~~------~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
|++ ..++..++.++...++..++..
T Consensus 149 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 149 AQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 753 4567778888877777666554
No 142
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.91 E-value=7.2e-09 Score=74.22 Aligned_cols=89 Identities=15% Similarity=-0.003 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHh-cCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 6 SICHSNRGICFLKL-GKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 6 ~~~~~~~~~~~~~~-~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
..++.++|.+|... |++++|+..|++++.+.|.. ..++.++|.++..+|+|++|+.. |++++++.|
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~~ 189 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI-------YSKLIKSSM 189 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHHHHh
Confidence 56899999999996 99999999999999998854 57899999999999999999999 999999998
Q ss_pred CcHH-------HHHHHHHHHHHHHHHHHHH
Q 033182 79 SNNQ-------AKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 79 ~~~~-------~~~~l~~~~~~~~~~~~~~ 101 (125)
++.. ++..++.++...++..++.
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 219 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAA 219 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 7654 4566777776666554443
No 143
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.90 E-value=3.9e-09 Score=79.18 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.++.++|.++...|++++|+..+++++..+|.++.++..+|.++...|++++|+.. ++++++.+|++.
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~~~~~~~~ 372 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETL-------FSEAKRKFPEAP 372 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHH-------HHHHHHHSTTCS
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHcccCH
Confidence 3556778899999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.++..++.++...++..++..
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHH
Confidence 999999988887776665544
No 144
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.88 E-value=2.8e-08 Score=74.29 Aligned_cols=86 Identities=13% Similarity=0.049 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHc--hhHHHHHHhHHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKL--EHFEEAIAGIQDLMIVMKK 72 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~~~ 72 (125)
+.....|.|+|.+|..+|++++|+..+++++.+. +..+..+.++|.++... ++|++|+.. |++
T Consensus 91 ~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~-------~~k 163 (472)
T 4g1t_A 91 IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVC-------FEK 163 (472)
T ss_dssp TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHH-------HHH
Confidence 3456789999999999999999999999999873 45678999999888765 579999999 999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHHH
Q 033182 73 ILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 73 a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
+++++|++++++..++.+...++
T Consensus 164 al~~~p~~~~~~~~~~~~~~~l~ 186 (472)
T 4g1t_A 164 ALEKKPKNPEFTSGLAIASYRLD 186 (472)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhc
Confidence 99999999999988887765544
No 145
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.85 E-value=1.4e-08 Score=74.74 Aligned_cols=93 Identities=22% Similarity=0.205 Sum_probs=79.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh-
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE- 75 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~- 75 (125)
+..+.++.++|.+|..+|+|++|+..+++++.+.|.. +.+++++|.++..+|++++|+.. ++++++
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~-------~~~al~~ 253 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY-------FKRAIAV 253 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHH
Confidence 4567889999999999999999999999999886543 36999999999999999999999 777776
Q ss_pred ----hC-CCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 76 ----FD-PSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 76 ----l~-p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+ |....++..++.++...++..++..
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 285 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHE 285 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 45 7788899999999888877665554
No 146
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.82 E-value=2e-08 Score=70.55 Aligned_cols=66 Identities=21% Similarity=0.190 Sum_probs=59.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL--------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMI 68 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l--------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 68 (125)
+....++.++|.++...|++++|+..+++++.+ +|....++..+|.++..+|++++|...++.++.
T Consensus 150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 566788999999999999999999999999998 788889999999999999999999999444443
No 147
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.81 E-value=4.7e-08 Score=75.74 Aligned_cols=96 Identities=11% Similarity=-0.006 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL-----NPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
|.-...+.|+|.+|..+|+|++|+..+++++.+ +|+ -+..+.++|.+|..+|+|++|...+++|+.++++.+
T Consensus 348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~l 427 (490)
T 3n71_A 348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTH 427 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 556788999999999999999999999999866 444 467899999999999999999999999999977666
Q ss_pred hhCCCcHH---HHHHHHHHHHHHHHHHHH
Q 033182 75 EFDPSNNQ---AKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 75 ~l~p~~~~---~~~~l~~~~~~~~~~~~~ 100 (125)
- |+++. +...+..++..++...++
T Consensus 428 G--~~Hp~~~~~~~~l~~~~~e~~~~~~a 454 (490)
T 3n71_A 428 G--PSHPITKDLEAMRMQTEMELRMFRQN 454 (490)
T ss_dssp C--TTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C--CCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 55554 444555555444444333
No 148
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.80 E-value=1.7e-08 Score=70.96 Aligned_cols=93 Identities=22% Similarity=0.248 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
+....++.++|.++...|++++|+..+++++.+. |....++.++|.++...|++++|+.. +++++
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~-------~~~a~ 180 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYY-------YQRAL 180 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH-------HHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHH
Confidence 5667889999999999999999999999999884 67788999999999999999999999 77776
Q ss_pred hh--------CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 75 EF--------DPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 75 ~l--------~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
++ +|....++..++.++...++..++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66 66677788889998888877766654
No 149
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.6e-09 Score=65.78 Aligned_cols=61 Identities=20% Similarity=0.344 Sum_probs=57.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHh
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
+|..+.+|+++|.++..+|++++|+..+++++.++|++ ..+++++|.++..+|+++.|+..
T Consensus 34 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 34 QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVE 100 (111)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSS
T ss_pred CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhH
Confidence 46678899999999999999999999999999999999 99999999999999999888877
No 150
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.75 E-value=1.6e-07 Score=68.92 Aligned_cols=93 Identities=10% Similarity=0.014 Sum_probs=78.6
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM----KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-- 76 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-- 76 (125)
+.....+..+|.++...|++++|+..|++++.++|++. .+++.+|.++..+|++++|+.. +++++++
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~~ 117 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQY-------HKHDLTLAK 117 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHH
Confidence 45667788999999999999999999999999999986 6899999999999999999999 6666665
Q ss_pred ----CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 77 ----DPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 77 ----~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+|....++..++.++...++..++..
T Consensus 118 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 147 (411)
T 4a1s_A 118 SMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HccCchHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 56667788888888877776655544
No 151
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.75 E-value=9.5e-08 Score=66.90 Aligned_cols=80 Identities=13% Similarity=-0.026 Sum_probs=57.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
|..+.+++.+|.++...|++++|+..|++++. |.++.+++++|.++.. .+++++|+.. |+++++.+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~-------~~~a~~~~- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASF-------YAKACDLN- 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHTT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHH-------HHHHHHCC-
Confidence 45666777777777777777777777777777 6667777777777777 7777777777 77776654
Q ss_pred CcHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPL 93 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~ 93 (125)
++.+...++.++..
T Consensus 73 -~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYS 86 (273)
T ss_dssp -CHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHhC
Confidence 56667777766655
No 152
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.75 E-value=4.5e-08 Score=65.09 Aligned_cols=92 Identities=10% Similarity=0.037 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh-
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALE------LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF- 76 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l- 76 (125)
..+.++.++|.++...|++++|+..+++++. ..|..+.++.++|.++..+|++++|... +++++++
T Consensus 24 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~ 96 (203)
T 3gw4_A 24 TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRC-------FLEERELL 96 (203)
T ss_dssp THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHH
Confidence 4678899999999999999999999999998 4566788999999999999999999999 6666665
Q ss_pred --CCC----cHHHHHHHHHHHHHHHHHHHHHH
Q 033182 77 --DPS----NNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 77 --~p~----~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.|+ ...++..++.++...++..++..
T Consensus 97 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (203)
T 3gw4_A 97 ASLPEDPLAASANAYEVATVALHFGDLAGARQ 128 (203)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHcCccHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 342 34567778888777776655544
No 153
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.75 E-value=2.6e-08 Score=71.04 Aligned_cols=84 Identities=14% Similarity=0.030 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALEL-------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
..++.++|.+|..+|+|++|+..|++++.. .+..+.+++++|.+|..+|+|++|+.. +++++++.+
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~-------~~~al~~~~ 227 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ-------VNKAIEISC 227 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHH
Confidence 557999999999999999999999999942 244567999999999999999999999 666666543
Q ss_pred C------cHHHHHHHHHHHHHHHH
Q 033182 79 S------NNQAKRTILRLQPLAEE 96 (125)
Q Consensus 79 ~------~~~~~~~l~~~~~~~~~ 96 (125)
. ...++..++.++..+++
T Consensus 228 ~~~~~~~~~~~~~~lg~~~~~~g~ 251 (293)
T 3u3w_A 228 RINSMALIGQLYYQRGECLRKLEY 251 (293)
T ss_dssp HTTBCTTHHHHHHHHHHHHHHTTC
T ss_pred HcCcHHHHHHHHHHHHHHHHHhCC
Confidence 3 37789999999988873
No 154
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.74 E-value=1e-07 Score=72.85 Aligned_cols=83 Identities=8% Similarity=-0.008 Sum_probs=69.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CC---CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL-----NP---TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
|.-...+.|+|.+|..+|+|++|+..+++++.+ +| +-+..+.++|.+|..+|+|++|...+++|+.+++..+
T Consensus 337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~l 416 (433)
T 3qww_A 337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAH 416 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHc
Confidence 556788999999999999999999999999865 44 4467899999999999999999999999999976554
Q ss_pred hhCCCcHHHHHHH
Q 033182 75 EFDPSNNQAKRTI 87 (125)
Q Consensus 75 ~l~p~~~~~~~~l 87 (125)
-|+++.+....
T Consensus 417 --G~~Hp~~~~l~ 427 (433)
T 3qww_A 417 --GKDHPYISEIK 427 (433)
T ss_dssp --CTTCHHHHHHH
T ss_pred --CCCChHHHHHH
Confidence 47777765433
No 155
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.74 E-value=6.4e-08 Score=71.10 Aligned_cols=93 Identities=11% Similarity=0.071 Sum_probs=75.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNP-------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
+..+.+++++|.+|..+|+++.|+..+.+++.+.+ ..+.++.++|.++..+|++++|... ++++++
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~ 212 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISH-------FQKAYS 212 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHH
Confidence 34678999999999999999999999999999843 3457999999999999999999999 666666
Q ss_pred hCCCc------HHHHHHHHHHHHHHHHHHHHHH
Q 033182 76 FDPSN------NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 76 l~p~~------~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+.|.. ..++..++.++...++..++..
T Consensus 213 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~ 245 (383)
T 3ulq_A 213 MAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIP 245 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 54322 2478888888887777666554
No 156
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.73 E-value=4.2e-08 Score=69.97 Aligned_cols=89 Identities=15% Similarity=0.035 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHH---hcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKAL---ELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al---~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
...++.++|.+|...|+|++|+..|++++ ...|++ ..+++++|.++..+|+|++|+.. +++++++.
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~-------~~kal~~~ 226 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ-------VNKAIEIS 226 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH-------HHHHHHHH
Confidence 35689999999999999999999999999 445553 36999999999999999999999 55555543
Q ss_pred CC------cHHHHHHHHHHHHHHHHHHHH
Q 033182 78 PS------NNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 78 p~------~~~~~~~l~~~~~~~~~~~~~ 100 (125)
+. ...++..++.++..+++..++
T Consensus 227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 227 CRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 22 367888899988887765554
No 157
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.72 E-value=7.1e-08 Score=61.08 Aligned_cols=56 Identities=27% Similarity=0.332 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHh
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.++.++|.++...|++++|+..+++++.+.+.. ..+++++|.++..+|++++|...
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 111 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY 111 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 466666777777777777777776666654332 45666667777777777777766
No 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.72 E-value=4.9e-08 Score=61.83 Aligned_cols=93 Identities=18% Similarity=0.164 Sum_probs=72.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
+..+.++.++|.++...|++++|+..+++++.+.+.. ..++.++|.++..+|++++|... +++++++
T Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~a~~~ 78 (164)
T 3ro3_A 6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEY-------YKKTLLL 78 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHH
Confidence 4567889999999999999999999999999886543 25899999999999999999999 6666655
Q ss_pred CCC------cHHHHHHHHHHHHHHHHHHHHHH
Q 033182 77 DPS------NNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 77 ~p~------~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+. ...++..++.++...++..++..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 110 (164)
T 3ro3_A 79 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 110 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 432 14466677777766665554443
No 159
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.72 E-value=1.1e-07 Score=71.03 Aligned_cols=86 Identities=21% Similarity=0.085 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 2 AELRSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
+|..+.++.++|..+.. .+++++|+..+++++..+|.++.++.++|.++...|++++|+.. ++++++.+
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~-------~~~al~~~ 277 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIEL-------LKKALEYI 277 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHS
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHH-------HHHHHHhC
Confidence 34556777788877655 46788999999999999999999999999999999999999999 99999999
Q ss_pred CCcHHHHHHHHHHHHHH
Q 033182 78 PSNNQAKRTILRLQPLA 94 (125)
Q Consensus 78 p~~~~~~~~l~~~~~~~ 94 (125)
|++..++..++.++...
T Consensus 278 p~~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 278 PNNAYLHCQIGCCYRAK 294 (472)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHH
Confidence 99999999999887544
No 160
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.71 E-value=7.6e-08 Score=75.65 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHHHHHHHhcC----------HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch--hHHHHHHhHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGK----------FEESIKECTKALELNPTYMKALIRRAEAHEKLE--HFEEAIAGIQDLMIV 69 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~----------~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~--~~~~A~~~~~~~~~~ 69 (125)
+|...++|+.|+.+....++ +++++..+++++..+|++..+|++++-++..++ +|++|+..
T Consensus 59 nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~------- 131 (567)
T 1dce_A 59 NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELEL------- 131 (567)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHH-------
T ss_pred CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHH-------
Confidence 56778899999999999988 999999999999999999999999999999999 77999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHHH
Q 033182 70 MKKILEFDPSNNQAKRTILRLQPLAE 95 (125)
Q Consensus 70 ~~~a~~l~p~~~~~~~~l~~~~~~~~ 95 (125)
+.++++++|.+..++....-+...++
T Consensus 132 ~~k~l~~d~~N~~aW~~R~~~l~~l~ 157 (567)
T 1dce_A 132 CARFLEADERNFHCWDYRRFVAAQAA 157 (567)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHcC
Confidence 99999999999999988887776665
No 161
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.71 E-value=1.4e-07 Score=74.22 Aligned_cols=86 Identities=14% Similarity=0.069 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch-hHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 2 AELRSICHSNRGICFLKLG--KFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+|....+|++|+.+..+.+ +|++++..+++++++||.+..+|..++.++..+| .+++++++ +.++++.+|
T Consensus 103 ~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~-------~~~~I~~~p 175 (567)
T 1dce_A 103 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF-------TDSLITRNF 175 (567)
T ss_dssp CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH-------HHTTTTTTC
T ss_pred CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH-------HHHHHHHCC
Confidence 4667789999999999999 7799999999999999999999999999999999 99999999 999999999
Q ss_pred CcHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLA 94 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~ 94 (125)
++..++...+.+...+
T Consensus 176 ~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 176 SNYSSWHYRSCLLPQL 191 (567)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHhh
Confidence 9999999999987765
No 162
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.70 E-value=6e-08 Score=71.33 Aligned_cols=92 Identities=10% Similarity=-0.003 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh--
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE-- 75 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~-- 75 (125)
..+.++.++|.+|...|+|++|+..+++++.+.+ ..+.++.++|.++..+|++++|+.. ++++++
T Consensus 180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~-------~~~al~~~ 252 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH-------FQKAAKVS 252 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHH
Confidence 4577888999999999999999999999988743 2356888999999999999999999 666666
Q ss_pred ---hCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 76 ---FDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 76 ---l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+|....+...++.++...++..++..
T Consensus 253 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 282 (378)
T 3q15_A 253 REKVPDLLPKVLFGLSWTLCKAGQTQKAFQ 282 (378)
T ss_dssp HHHCGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhCChhHHHHHHHHHHHHHHCCCHHHHHH
Confidence 667778888888888887776665554
No 163
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.69 E-value=1.1e-07 Score=69.68 Aligned_cols=88 Identities=13% Similarity=0.046 Sum_probs=81.6
Q ss_pred hhHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHhcCCCChHHHHHHHHHHHHchh------HHHHHHhHHHHHHHHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFE--ESIKECTKALELNPTYMKALIRRAEAHEKLEH------FEEAIAGIQDLMIVMKKI 73 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~------~~~A~~~~~~~~~~~~~a 73 (125)
+|.+..+|+.|+.+....+.++ +++..+++++..||.|..+|+.++.++..++. ++++++. +.++
T Consensus 140 ~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~-------~~~a 212 (306)
T 3dra_A 140 DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNY-------VKDK 212 (306)
T ss_dssp CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHH-------HHHH
T ss_pred CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHH-------HHHH
Confidence 4677889999999999999998 99999999999999999999999999999998 9999999 9999
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHH
Q 033182 74 LEFDPSNNQAKRTILRLQPLAEE 96 (125)
Q Consensus 74 ~~l~p~~~~~~~~l~~~~~~~~~ 96 (125)
+..+|+|..++..+.-+....+.
T Consensus 213 I~~~p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 213 IVKCPQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHCSSCHHHHHHHHHHHHHTTC
T ss_pred HHhCCCCccHHHHHHHHHHhcCC
Confidence 99999999999999988877654
No 164
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.69 E-value=3e-07 Score=70.07 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=70.7
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL-----NPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-----~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
+.....+.|+|.+|..+|+|++|+..+++++.. +|+ -+..++++|.+|..+|++++|...+++|+.+++..+
T Consensus 326 ~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~l 405 (429)
T 3qwp_A 326 IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTH 405 (429)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Confidence 556788999999999999999999999999865 444 466899999999999999999999999999977665
Q ss_pred hhCCCcHHHHHHHHHH
Q 033182 75 EFDPSNNQAKRTILRL 90 (125)
Q Consensus 75 ~l~p~~~~~~~~l~~~ 90 (125)
- |+++.+...+..+
T Consensus 406 G--~~Hp~~~~~~~~l 419 (429)
T 3qwp_A 406 G--REHSLIEDLILLL 419 (429)
T ss_dssp C--TTSHHHHHHHHHH
T ss_pred C--CCChHHHHHHHHH
Confidence 4 6666655544433
No 165
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.68 E-value=9.7e-08 Score=70.06 Aligned_cols=85 Identities=16% Similarity=0.166 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-- 76 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-- 76 (125)
...++.++|.++...|++++|+..+++++.+ +|....++..+|.++..+|++++|... +++++++
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~~ 157 (411)
T 4a1s_A 85 LSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC-------CERHLTLAR 157 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHH
Confidence 3578999999999999999999999999998 678899999999999999999999999 6666555
Q ss_pred ----CCCcHHHHHHHHHHHHHHHH
Q 033182 77 ----DPSNNQAKRTILRLQPLAEE 96 (125)
Q Consensus 77 ----~p~~~~~~~~l~~~~~~~~~ 96 (125)
.|....++..++.++...++
T Consensus 158 ~~~~~~~~~~~~~~l~~~~~~~g~ 181 (411)
T 4a1s_A 158 QLGDRLSEGRALYNLGNVYHAKGK 181 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhchHHHHHHHHHHHHHHHHcCc
Confidence 45566788888888888877
No 166
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.67 E-value=5.8e-08 Score=58.99 Aligned_cols=61 Identities=16% Similarity=0.144 Sum_probs=54.2
Q ss_pred cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 35 LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 35 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+|+++.+++++|.++..+|++++|+.. |+++++++|++..++..++.++...++..++..
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 62 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALAL-------FEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 4799999999999999999999999999 999999999999999999999988887766554
No 167
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=98.66 E-value=2.9e-07 Score=59.24 Aligned_cols=84 Identities=17% Similarity=0.207 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHhcCHHH---HHHHHHHHHhcC-C-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 5 RSICHSNRGICFLKLGKFEE---SIKECTKALELN-P-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~---A~~~~~~al~l~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
....-++.|+++.+..+... ++..++..+.-+ | ...+++|.+|..++++|+|+.|... ++.+++.+|+
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~-------~~~lL~~eP~ 106 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY-------VRGLLQTEPQ 106 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTT
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHhCCC
Confidence 35667889999999877655 999999999988 6 6788999999999999999999999 9999999999
Q ss_pred cHHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLAE 95 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~~ 95 (125)
|..+......+.+++.
T Consensus 107 n~QA~~Lk~~i~~~i~ 122 (126)
T 1nzn_A 107 NNQAKELERLIDKAMK 122 (126)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999887777766554
No 168
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.66 E-value=2.9e-07 Score=66.79 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CC-ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELN--PT-YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
..+++++|.++..+|++++|+..|++++.-. |. .+.+++++|.++.++|+.++|... |++++..+|+ ..
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~-------l~~a~a~~P~-~~ 242 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVAL-------LEWLQTTHPE-PK 242 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHSCC-HH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhcCCc-HH
Confidence 4589999999999999999999999998654 55 678999999999999999999999 9999999999 77
Q ss_pred HHHHHHH
Q 033182 83 AKRTILR 89 (125)
Q Consensus 83 ~~~~l~~ 89 (125)
+...|..
T Consensus 243 ~~~aL~~ 249 (282)
T 4f3v_A 243 VAAALKD 249 (282)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 7766643
No 169
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.65 E-value=7.3e-08 Score=64.05 Aligned_cols=93 Identities=15% Similarity=0.124 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL------NP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
+..+.++.++|.++..+|++++|+..+++++.+ +| ....++.++|.++..+|++++|... ++++++
T Consensus 63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~ 135 (203)
T 3gw4_A 63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE-------YEKSLV 135 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHH
Confidence 456788999999999999999999999999998 33 3467899999999999999999999 666655
Q ss_pred hCC--Cc----HHHHHHHHHHHHHHHHHHHHHH
Q 033182 76 FDP--SN----NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 76 l~p--~~----~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+.+ ++ ..+...++.++...++..++..
T Consensus 136 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 168 (203)
T 3gw4_A 136 YAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168 (203)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhccchHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 422 22 2245677777777766655543
No 170
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.65 E-value=1.2e-07 Score=68.93 Aligned_cols=91 Identities=20% Similarity=0.172 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
.+.++.++|.++...|++++|+..+++++.+.|.. ..++.++|.++..+|++++|... +++++++.+
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~a~~~~~ 298 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY-------HLKHLAIAQ 298 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHH-------HHHHHHHHH
Confidence 44578888888888888888888888888877655 67888888888888888888888 666666543
Q ss_pred Cc------HHHHHHHHHHHHHHHHHHHHHH
Q 033182 79 SN------NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 79 ~~------~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.. ..++..++.++...++..++..
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 22 4566777777777766555544
No 171
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.65 E-value=6.3e-08 Score=70.37 Aligned_cols=93 Identities=18% Similarity=0.161 Sum_probs=76.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh------HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM------KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
+..+.++.++|.++...|++++|+..+++++.+.|... .++.++|.++..+|++++|... +++++++
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~ 256 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY-------YKKTLLL 256 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH-------HHHHHHH
Confidence 45567899999999999999999999999999876543 4999999999999999999999 7777776
Q ss_pred CCCc------HHHHHHHHHHHHHHHHHHHHHH
Q 033182 77 DPSN------NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 77 ~p~~------~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.|.. ..++..++.++...++..++..
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 6544 5577778887777666655544
No 172
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.65 E-value=2.8e-07 Score=67.69 Aligned_cols=68 Identities=15% Similarity=0.067 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALE-----LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-----l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
..+.++.++|.+|..+|++++|+..+++++. .+|..+.+++++|.++..+|++++|... +++++++.+
T Consensus 220 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~~ 292 (378)
T 3q15_A 220 FIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQF-------IEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHH
Confidence 4567899999999999999999999999999 7888899999999999999999999999 888888743
No 173
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.64 E-value=1.2e-07 Score=69.37 Aligned_cols=90 Identities=12% Similarity=-0.048 Sum_probs=81.5
Q ss_pred ChhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhcCCCChHHHHHHHHHH----HHc---hhHHHHHHhHHHHHHHHH
Q 033182 1 MAELRSICHSNRGICFLKLG--KFEESIKECTKALELNPTYMKALIRRAEAH----EKL---EHFEEAIAGIQDLMIVMK 71 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~--~~~~A~~~~~~al~l~p~~~~~~~~~~~~~----~~~---~~~~~A~~~~~~~~~~~~ 71 (125)
++|...++|+.|+.+....+ ++++++..++.++..+|++..+|+.++.++ ... +.+++++.. +.
T Consensus 62 ~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~-------~~ 134 (306)
T 3dra_A 62 ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDI-------LE 134 (306)
T ss_dssp HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHH-------HH
T ss_pred HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHH-------HH
Confidence 36778899999999999999 999999999999999999999999999999 766 788999999 99
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 72 KILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 72 ~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
++++.+|.+-.++....-+...++..
T Consensus 135 ~~l~~~pkny~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 135 AMLSSDPKNHHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCT
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccc
Confidence 99999999999998888777766543
No 174
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.64 E-value=1.9e-06 Score=63.72 Aligned_cols=86 Identities=14% Similarity=0.066 Sum_probs=80.2
Q ss_pred hhHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-HHHHHHhHHHHHHHHHHHHhhCC
Q 033182 2 AELRSICHSNRGICFLKLGK--FEESIKECTKALELNPTYMKALIRRAEAHEKLEH-FEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~--~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+|....+|+.|+.+....++ +++++..+++++..||.|..+|..++.++...|. +++++++ +.++++.+|
T Consensus 104 ~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~-------~~~~I~~~p 176 (331)
T 3dss_A 104 NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF-------TDSLITRNF 176 (331)
T ss_dssp CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH-------HHHHHHHCS
T ss_pred CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH-------HHHHHHHCC
Confidence 46778999999999999994 9999999999999999999999999999999999 6999999 999999999
Q ss_pred CcHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLA 94 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~ 94 (125)
+|..++.....+...+
T Consensus 177 ~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 177 SNYSSWHYRSCLLPQL 192 (331)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998887766
No 175
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.63 E-value=2.3e-07 Score=65.16 Aligned_cols=98 Identities=10% Similarity=0.028 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
.....+...|.++...|++++|+..+++++..+|++ ..++..+|.++...|++++|+..++.++.+.... ...|.
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~ 81 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI-GDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc-cccHH
Confidence 445678889999999999999999999999999998 5789999999999999999999944333332211 11344
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH
Q 033182 80 NNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
...++..++.++...++..++..
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~ 104 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIV 104 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHH
Confidence 56677777777776665555443
No 176
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.62 E-value=2.1e-08 Score=60.07 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=55.9
Q ss_pred hHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 3 ELRSI-CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 3 ~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
|..+. +++++|.++..+|++++|+..|++++.++|++..++.+ +.+.++... |+++...+|++.
T Consensus 31 p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~-------~~~~~~~~p~~~ 95 (99)
T 2kc7_A 31 PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNF-------YNKDMYNQLEHH 95 (99)
T ss_dssp SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHH-------HCCTTHHHHCCS
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHH-------HHHHhccCcccc
Confidence 45667 99999999999999999999999999999999998865 777888888 888888877653
No 177
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.61 E-value=5.8e-07 Score=68.93 Aligned_cols=92 Identities=12% Similarity=0.083 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHHH-------hcCHH-------HHHHHHHHHHh-cCCCChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182 2 AELRSICHSNRGICFLK-------LGKFE-------ESIKECTKALE-LNPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~-------~~~~~-------~A~~~~~~al~-l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 66 (125)
.|..+.+|+++|..+.+ .|+++ +|...+++++. ++|++...|+.+|..+...|++++|...
T Consensus 268 ~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~---- 343 (530)
T 2ooe_A 268 LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI---- 343 (530)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH----
Confidence 35677889999998886 68876 89999999997 7999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCcH-HHHHHHHHHHHHHHHHHHH
Q 033182 67 MIVMKKILEFDPSNN-QAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 67 ~~~~~~a~~l~p~~~-~~~~~l~~~~~~~~~~~~~ 100 (125)
|+++++++|.+. .++.....+....+....+
T Consensus 344 ---~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 344 ---YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp ---HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHhCccccCchHHHHHHHHHHHHhcCHHHH
Confidence 999999999875 5777777776665554443
No 178
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.61 E-value=1e-07 Score=68.62 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
..++.++|.+|.. |++++|+..|++++.+.|.. ..++.++|.++..+|+|++|+.. |++++++.|
T Consensus 116 a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-------~~~al~~~~ 186 (307)
T 2ifu_A 116 AMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAAS-------LQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHH
Confidence 4556667777766 77777777777776665532 45666677777777777777777 555555543
No 179
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.59 E-value=4.9e-07 Score=66.92 Aligned_cols=83 Identities=13% Similarity=0.035 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc--------------hhHHHHHHhHHHH
Q 033182 2 AELRSICHSNRGICFLKLGK-FEESIKECTKALELNPTYMKALIRRAEAHEKL--------------EHFEEAIAGIQDL 66 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~--------------~~~~~A~~~~~~~ 66 (125)
+|.+..+|..|+.+....|. +++++..+++++..+|.|..+|+.++.++..+ +.++++++.
T Consensus 140 dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~---- 215 (331)
T 3dss_A 140 DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELEL---- 215 (331)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHH----
Confidence 57788999999999999998 69999999999999999999999999999988 778999999
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHH
Q 033182 67 MIVMKKILEFDPSNNQAKRTILRLQ 91 (125)
Q Consensus 67 ~~~~~~a~~l~p~~~~~~~~l~~~~ 91 (125)
+.+++..+|++..++..+.-+.
T Consensus 216 ---~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 216 ---VQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp ---HHHHHHHSTTCHHHHHHHHHHH
T ss_pred ---HHHHHHhCCCCHHHHHHHHHHH
Confidence 9999999999999997654443
No 180
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.58 E-value=2.5e-07 Score=63.32 Aligned_cols=82 Identities=9% Similarity=-0.138 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHH
Q 033182 4 LRSICHSNRGICFLK----LGKFEESIKECTKALELNP--TYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKI 73 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a 73 (125)
..+.+++++|.+|.. .+++++|+..|++++..+| .++.+++++|.+|.. .+++++|+.+ |+++
T Consensus 83 g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~-------~~~A 155 (212)
T 3rjv_A 83 GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY-------FKGS 155 (212)
T ss_dssp TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH-------HHHH
T ss_pred CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH-------HHHH
Confidence 456778889999887 7889999999999999888 468899999999998 8889999999 8888
Q ss_pred HhhCCCcHHHHHHHHHHHHH
Q 033182 74 LEFDPSNNQAKRTILRLQPL 93 (125)
Q Consensus 74 ~~l~p~~~~~~~~l~~~~~~ 93 (125)
.++ |+++.+...|+.++..
T Consensus 156 ~~~-~~~~~a~~~Lg~~y~~ 174 (212)
T 3rjv_A 156 SSL-SRTGYAEYWAGMMFQQ 174 (212)
T ss_dssp HHT-SCTTHHHHHHHHHHHH
T ss_pred HHc-CCCHHHHHHHHHHHHc
Confidence 887 6777788888887754
No 181
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.58 E-value=2.3e-07 Score=65.18 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
...++.++|.++...|++++|+..+++++.+ .|..+.++..+|.++..+|++++|... +++++++.|
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-------~~~al~~~~ 114 (338)
T 3ro2_A 42 LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC-------CQRHLDISR 114 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHHHH
Confidence 3678999999999999999999999999988 566788999999999999999999999 666666544
Q ss_pred Cc------HHHHHHHHHHHHHHHH
Q 033182 79 SN------NQAKRTILRLQPLAEE 96 (125)
Q Consensus 79 ~~------~~~~~~l~~~~~~~~~ 96 (125)
.. ..++..++.++...++
T Consensus 115 ~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 115 ELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCchHHHHHHHHHHHHHHHcCc
Confidence 32 3377778888777776
No 182
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.57 E-value=5.7e-07 Score=62.88 Aligned_cols=78 Identities=12% Similarity=0.073 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhh
Q 033182 5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
.+.+++++|.++.. .+++++|+..|++++..+ ++.+++++|.++.. .+++++|+.. |+++++.
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~-------~~~a~~~ 107 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQY-------YSKACDL 107 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHH-------HHHHHHc
Confidence 34566777777777 777777777777777665 66777777777777 7777777777 6666665
Q ss_pred CCCcHHHHHHHHHHHHH
Q 033182 77 DPSNNQAKRTILRLQPL 93 (125)
Q Consensus 77 ~p~~~~~~~~l~~~~~~ 93 (125)
+++.+...++.++..
T Consensus 108 --~~~~a~~~lg~~~~~ 122 (273)
T 1ouv_A 108 --KYAEGCASLGGIYHD 122 (273)
T ss_dssp --TCHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHc
Confidence 356666666666655
No 183
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.56 E-value=2.3e-07 Score=66.14 Aligned_cols=69 Identities=20% Similarity=0.230 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHch-hHHHHHHhHHHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLE-HFEEAIAGIQDLMIVMK 71 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~ 71 (125)
+..+.+++|+|.+|.++|+|++|+..+++++.+.+.. +.+++++|.++..+| .+++|...+++|+.+++
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 4566799999999999999999999999999987543 889999999999999 57999999555555543
No 184
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.55 E-value=1.4e-06 Score=62.02 Aligned_cols=90 Identities=18% Similarity=0.039 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH---hh
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL---EF 76 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~---~l 76 (125)
...++.+|.++...|++++|+..+++++...+.. ..++.++|.+|..+|+|++|+.. |++++ +.
T Consensus 115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~-------~~kal~~~~~ 187 (293)
T 2qfc_A 115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL-------FEQILKQLEA 187 (293)
T ss_dssp HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHh
Confidence 3456789999999999999999999999876543 67999999999999999999999 66666 44
Q ss_pred CCCcH----HHHHHHHHHHHHHHHHHHHHH
Q 033182 77 DPSNN----QAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 77 ~p~~~----~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.|++. .++..++.++...++..++..
T Consensus 188 ~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~ 217 (293)
T 2qfc_A 188 LHDNEEFDVKVRYNHAKALYLDSRYEESLY 217 (293)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCccccchHHHHHhHHHHHHHHhhHHHHHH
Confidence 56543 577888888877777666654
No 185
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=98.53 E-value=3.3e-06 Score=54.67 Aligned_cols=84 Identities=13% Similarity=0.027 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 6 SICHSNRGICFLKLGK---FEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~---~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+..-++.|+++++..+ ...++..++..++-+| ...+++|.+|..+.++|+|+.|..+ .+.+++.+|+|.
T Consensus 40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y-------~d~lL~~eP~N~ 112 (134)
T 3o48_A 40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY-------VDTLFEHERNNK 112 (134)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHTTCTTCH
T ss_pred hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHhhCCCCH
Confidence 3456788888888654 5679999999999999 4588999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEE 96 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~ 96 (125)
.+......+.+++..
T Consensus 113 QA~~Lk~~Ie~ki~k 127 (134)
T 3o48_A 113 QVGALKSMVEDKIQK 127 (134)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 998887777766653
No 186
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.53 E-value=7e-07 Score=66.55 Aligned_cols=90 Identities=12% Similarity=-0.000 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc-h-hHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 2 AELRSICHSNRGICFLKLG-KFEESIKECTKALELNPTYMKALIRRAEAHEKL-E-HFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~-~-~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+|...++|+.|+.+....+ .+++++..+++++..+|++..+|+.++.++..+ + ++++++.. +.++++.+|
T Consensus 84 nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~-------~~k~L~~dp 156 (349)
T 3q7a_A 84 NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEY-------IHGSLLPDP 156 (349)
T ss_dssp CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHH-------HHHHTSSCT
T ss_pred CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHH-------HHHHHHhCC
Confidence 5778899999999999999 599999999999999999999999999999998 7 88999999 999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHH
Q 033182 79 SNNQAKRTILRLQPLAEEKL 98 (125)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~ 98 (125)
.|-.++....-+...++...
T Consensus 157 kNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 157 KNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp TCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhcccc
Confidence 99999988888877766543
No 187
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.52 E-value=2.2e-07 Score=54.15 Aligned_cols=52 Identities=29% Similarity=0.368 Sum_probs=48.2
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE 54 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 54 (125)
|..+.+++++|.++...|++++|+..+++++.++|.++.++.++|.++..+|
T Consensus 40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 5567889999999999999999999999999999999999999999987764
No 188
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.50 E-value=1.8e-07 Score=67.36 Aligned_cols=90 Identities=14% Similarity=0.074 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC------ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT------YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
...+|.++|.+|..+|++++|+..|++++.+.+. ...++.++|.+|.. |++++|+.. |++++++.|
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~-------~~~Al~~~~ 146 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL-------YQQAAAVFE 146 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH-------HHHHHHHHH
Confidence 3568999999999999999999999999988532 25789999999999 999999999 666666655
Q ss_pred Cc------HHHHHHHHHHHHHHHHHHHHHH
Q 033182 79 SN------NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 79 ~~------~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.. ..++..++.++..+++..++..
T Consensus 147 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 176 (307)
T 2ifu_A 147 NEERLRQAAELIGKASRLLVRQQKFDEAAA 176 (307)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 32 4567778888777776655544
No 189
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.50 E-value=6.7e-07 Score=66.67 Aligned_cols=88 Identities=9% Similarity=0.008 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHHHHHhcCHH--------HHHHHHHHHHhcCCCChHHHHHHHHHHHHchh-------HHHHHHhHHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFE--------ESIKECTKALELNPTYMKALIRRAEAHEKLEH-------FEEAIAGIQDL 66 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~--------~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~-------~~~A~~~~~~~ 66 (125)
+|.+..+|..|+.+..+.+.++ +++..+++++..+|.|..+|+.++.++..++. ++++++.
T Consensus 155 dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~---- 230 (349)
T 3q7a_A 155 DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIY---- 230 (349)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHH----
T ss_pred CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHH----
Confidence 5778889999999999999888 99999999999999999999999999999987 7888888
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 033182 67 MIVMKKILEFDPSNNQAKRTILRLQPLAEE 96 (125)
Q Consensus 67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 96 (125)
+.+++.++|+|..++..+.-+....+.
T Consensus 231 ---~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 231 ---ILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp ---HHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 999999999999999998887765543
No 190
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.46 E-value=5.7e-06 Score=54.18 Aligned_cols=82 Identities=13% Similarity=0.016 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhcC---HHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 6 SICHSNRGICFLKLGK---FEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~---~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
...-++.|+++.+..+ -..++..++..+.-+| ...+++|.+|..+.++|+|++|..+ .+.+++.+|+|.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y-------~d~lL~~eP~n~ 111 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRY-------VDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHH-------HHHHHHTCCCCH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHH-------HHHHHhcCCCcH
Confidence 4567888889888765 4689999999999888 4678999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLA 94 (125)
Q Consensus 82 ~~~~~l~~~~~~~ 94 (125)
.+......+.+++
T Consensus 112 QA~~Lk~~Ie~~i 124 (144)
T 1y8m_A 112 QVGALKSMVEDKI 124 (144)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9887777666544
No 191
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.44 E-value=3.9e-06 Score=64.30 Aligned_cols=77 Identities=10% Similarity=-0.056 Sum_probs=66.5
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYM-KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
.|....+|.+++..+.+.|++++|...|++++.++|.++ .+|..+|.++...|++++|... |+++++..|.+
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~Al~~~~~~ 389 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI-------FKKAREDARTR 389 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHTCTTCC
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHH-------HHHHHhccCCc
Confidence 356678999999999999999999999999999999985 6999999999999999999998 88888877765
Q ss_pred HHHHH
Q 033182 81 NQAKR 85 (125)
Q Consensus 81 ~~~~~ 85 (125)
...+.
T Consensus 390 ~~~~~ 394 (530)
T 2ooe_A 390 HHVYV 394 (530)
T ss_dssp THHHH
T ss_pred hHHHH
Confidence 55443
No 192
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.40 E-value=1.9e-06 Score=62.49 Aligned_cols=92 Identities=9% Similarity=0.026 Sum_probs=75.9
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-C-hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC--C
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPT-Y-MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD--P 78 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~--p 78 (125)
|... ..+.+|..+++.++|++|+..++.+....+. . ..+++.+|.++..+|++++|+.+ |++++.-. |
T Consensus 133 p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~-------l~~a~~g~~~P 204 (282)
T 4f3v_A 133 SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERR-------LTEANDSPAGE 204 (282)
T ss_dssp CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTSTTTT
T ss_pred CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHhcCCCCc
Confidence 4455 8899999999999999999999988776422 2 45899999999999999999999 99998654 6
Q ss_pred C-cHHHHHHHHHHHHHHHHHHHHHH
Q 033182 79 S-NNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 79 ~-~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
. ..++...++.+...+++..++..
T Consensus 205 ~~~~da~~~~glaL~~lGr~deA~~ 229 (282)
T 4f3v_A 205 ACARAIAWYLAMARRSQGNESAAVA 229 (282)
T ss_dssp TTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6 66788999999988887766654
No 193
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.37 E-value=2.3e-06 Score=58.48 Aligned_cols=76 Identities=13% Similarity=0.086 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch----hHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE----HFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
++.+++++|.+|...+++++|+..|++++.. .++.+++++|.+|.. + ++++|+.+ |+++.+ +++
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~-------~~~A~~--~g~ 84 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQL-------AEKAVE--AGS 84 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHH-------HHHHHH--TTC
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHH-------HHHHHH--CCC
Confidence 4556667777777777777777777776554 456666666666666 5 66666666 555533 455
Q ss_pred HHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQP 92 (125)
Q Consensus 81 ~~~~~~l~~~~~ 92 (125)
+.+...++.++.
T Consensus 85 ~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 85 KSGEIVLARVLV 96 (212)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHH
Confidence 566666655553
No 194
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.35 E-value=2.9e-06 Score=63.67 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
+|..+.++.-.+..+...|++++|+..+++++.++|+ ..+|..+|.++.-.|++++|++. |++|+.++|..+
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~-------~~~AlrL~P~~~ 344 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADA-------YLTAFNLRPGAN 344 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSCSHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCcC
Confidence 3556778888888888899999999999999999985 67889999999999999999999 999999999876
Q ss_pred HHHHHHH
Q 033182 82 QAKRTIL 88 (125)
Q Consensus 82 ~~~~~l~ 88 (125)
++.++.
T Consensus 345 -t~~~~~ 350 (372)
T 3ly7_A 345 -TLYWIE 350 (372)
T ss_dssp -HHHHHH
T ss_pred -hHHHHh
Confidence 455443
No 195
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.31 E-value=6.8e-06 Score=59.72 Aligned_cols=90 Identities=14% Similarity=0.048 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELN--------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~--------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
..++.++|.++...|++++|+..+++++.+. |....++.++|.++...|++++|... +++++.+.
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------~~~al~~~ 165 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS-------ARSGIEVL 165 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHHHh
Confidence 4567899999999999999999999999875 44567888999999999999999999 88888877
Q ss_pred CC-----cHHHHHHHHHHHHHHHHHHHHHH
Q 033182 78 PS-----NNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 78 p~-----~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
|. ...++..++.++...++..++..
T Consensus 166 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 195 (373)
T 1hz4_A 166 SSYQPQQQLQCLAMLIQCSLARGDLDNARS 195 (373)
T ss_dssp TTSCGGGGHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 64 23466777777777766655543
No 196
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.27 E-value=8.2e-06 Score=52.36 Aligned_cols=72 Identities=10% Similarity=0.045 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhh
Q 033182 5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
.+.+++++|.+|.. .+++++|+..|+++... .++.+++++|.+|.. .+++++|..+ |+++.+.
T Consensus 56 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~-------~~~Aa~~ 126 (138)
T 1klx_A 56 SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKT-------FEKACRL 126 (138)
T ss_dssp CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHH-------HHHHHHC
Confidence 45678888888887 78888888888888776 568888888888888 8888888888 8877775
Q ss_pred CCCcHHHHHHH
Q 033182 77 DPSNNQAKRTI 87 (125)
Q Consensus 77 ~p~~~~~~~~l 87 (125)
+++.+...+
T Consensus 127 --g~~~A~~~l 135 (138)
T 1klx_A 127 --GSEDACGIL 135 (138)
T ss_dssp --TCHHHHHHC
T ss_pred --CCHHHHHHH
Confidence 444444433
No 197
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.24 E-value=7.8e-06 Score=62.04 Aligned_cols=80 Identities=16% Similarity=0.043 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhh
Q 033182 5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
.+.+++++|.+|.. .+++++|+..|++++..+ ++.+++++|.+|.. .+++++|..+ |+++++.
T Consensus 362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~-------~~~A~~~ 432 (490)
T 2xm6_A 362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAW-------FDTASTN 432 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHH-------HHHHHHC
Confidence 46789999999999 899999999999998865 68899999999998 8999999999 9999999
Q ss_pred CCC---cHHHHHHHHHHHHH
Q 033182 77 DPS---NNQAKRTILRLQPL 93 (125)
Q Consensus 77 ~p~---~~~~~~~l~~~~~~ 93 (125)
+|+ ++.+...++.+...
T Consensus 433 ~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 433 DMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCcCCHHHHHHHHhcCHh
Confidence 854 88888888777654
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.21 E-value=4.3e-06 Score=64.75 Aligned_cols=93 Identities=17% Similarity=0.048 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhc-----CCC---ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh-CCCc
Q 033182 10 SNRGICFLKLGKFEESIKECTKALEL-----NPT---YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-DPSN 80 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~l-----~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-~p~~ 80 (125)
.+.+..+..+|+|++|+..+++++.+ +|+ -+..+.++|.+|..+|+|++|...+++++.++++.+-- +|+.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 34556677899999999999999876 344 46789999999999999999999999999888776653 3455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 033182 81 NQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
..++..|+.++..+++..++..
T Consensus 393 a~~l~nLa~~~~~~G~~~eA~~ 414 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGHIEVGHG 414 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHH
Confidence 5577788888887777766655
No 199
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.09 E-value=1e-05 Score=58.79 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC-
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTY------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD- 77 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~- 77 (125)
...++.++|.++...|++++|...+++++.+.|.. ..++.++|.++..+|++++|... +++++++.
T Consensus 52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~-------~~~al~~~~ 124 (373)
T 1hz4_A 52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET-------QEKAFQLIN 124 (373)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHH
Confidence 34578899999999999999999999999886543 34578899999999999999999 55555543
Q ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 78 -------PSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 78 -------p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
|....+...++.++...++..++..
T Consensus 125 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 156 (373)
T 1hz4_A 125 EQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA 156 (373)
T ss_dssp HTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhccccCcHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 3344566677777766665555443
No 200
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.06 E-value=8e-06 Score=62.35 Aligned_cols=85 Identities=14% Similarity=0.060 Sum_probs=69.1
Q ss_pred HhcCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh-CCCcHHHHHHHH
Q 033182 18 KLGKFEESIKECTKALEL-----NPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-DPSNNQAKRTIL 88 (125)
Q Consensus 18 ~~~~~~~A~~~~~~al~l-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-~p~~~~~~~~l~ 88 (125)
..|+|++|+..+++++.+ +|++ +..+.++|.+|..+|+|++|...+++++.++++.+-- +|+...++..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999999875 4555 5789999999999999999999999999988877653 355566777888
Q ss_pred HHHHHHHHHHHHHH
Q 033182 89 RLQPLAEEKLEKMK 102 (125)
Q Consensus 89 ~~~~~~~~~~~~~~ 102 (125)
.++..+++..++..
T Consensus 390 ~~~~~qg~~~eA~~ 403 (433)
T 3qww_A 390 RLYMGLENKAAGEK 403 (433)
T ss_dssp HHHHHTTCHHHHHH
T ss_pred HHHHhccCHHHHHH
Confidence 88888887766655
No 201
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.04 E-value=1.1e-05 Score=58.77 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHh-----cCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHHHHc-hhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 5 RSICHSNRGICFLKL-----GKFEESIKECTKALELNPTY-MKALIRRAEAHEKL-EHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~-----~~~~~A~~~~~~al~l~p~~-~~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
...+|.-+|..|.+. |+.+.|..+|+++++++|+. ...++..|..++.. |+++.|.+. ++++++.+
T Consensus 198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~-------L~kAL~a~ 270 (301)
T 3u64_A 198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEA-------LDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHH-------HHHHHHCC
T ss_pred cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHH-------HHHHHcCC
Confidence 678999999999995 99999999999999999975 99999999999884 999999999 99999988
Q ss_pred CCc
Q 033182 78 PSN 80 (125)
Q Consensus 78 p~~ 80 (125)
|..
T Consensus 271 p~~ 273 (301)
T 3u64_A 271 PES 273 (301)
T ss_dssp GGG
T ss_pred CCC
Confidence 763
No 202
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.00 E-value=1.7e-05 Score=60.23 Aligned_cols=76 Identities=16% Similarity=0.139 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHc----hhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 5 RSICHSNRGICFLKLG---KFEESIKECTKALELNPTYMKALIRRAEAHEKL----EHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~---~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~----~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
.+.+++++|.+|...| ++++|+..|+++...+|..+..++++|.+|... +++++|+.+ |+++.
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~-------~~~aa--- 244 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQAL-------LEKIA--- 244 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHH-------HHHHG---
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHH-------HHHHc---
Confidence 3457888999999988 899999999999999999999889999998766 688889888 88887
Q ss_pred CCcHHHHHHHHHH
Q 033182 78 PSNNQAKRTILRL 90 (125)
Q Consensus 78 p~~~~~~~~l~~~ 90 (125)
|+++.+...++.+
T Consensus 245 ~g~~~a~~~Lg~~ 257 (452)
T 3e4b_A 245 PGYPASWVSLAQL 257 (452)
T ss_dssp GGSTHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 8888888888887
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.95 E-value=3.4e-05 Score=58.70 Aligned_cols=91 Identities=18% Similarity=0.075 Sum_probs=72.3
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhc-----CCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh-hCCCcHH
Q 033182 12 RGICFLKLGKFEESIKECTKALEL-----NPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE-FDPSNNQ 82 (125)
Q Consensus 12 ~~~~~~~~~~~~~A~~~~~~al~l-----~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~-l~p~~~~ 82 (125)
...-+..+|+|++|+..+++++.. +|++ ...+.++|.+|..+|+|++|...+++++.++++.+- .+|+...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 344455789999999999999975 3544 678999999999999999999999999999887765 2355555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 83 AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 83 ~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+..|+.++..+++..++..
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~ 392 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMK 392 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHH
Confidence 77788888888777666654
No 204
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.87 E-value=7e-05 Score=56.78 Aligned_cols=76 Identities=12% Similarity=0.011 Sum_probs=53.7
Q ss_pred HHHHHHHHHHH-H--HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch-----hHHHHHHhHHHHHHHHHHHHhh
Q 033182 5 RSICHSNRGIC-F--LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-----HFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 5 ~~~~~~~~~~~-~--~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-----~~~~A~~~~~~~~~~~~~a~~l 76 (125)
.+.+++++|.+ + ...+++++|+..|+++...+ ++.+++++|.+|. .| ++++|+.+ |+++.
T Consensus 247 ~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~-------~~~Aa-- 314 (452)
T 3e4b_A 247 YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAH-------FEKAV-- 314 (452)
T ss_dssp STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHH-------HHTTT--
T ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHH-------HHHHh--
Confidence 45667777777 3 35677777777777776543 6777777777777 45 77777777 77777
Q ss_pred CCCcHHHHHHHHHHHHH
Q 033182 77 DPSNNQAKRTILRLQPL 93 (125)
Q Consensus 77 ~p~~~~~~~~l~~~~~~ 93 (125)
|+++.+...++.++..
T Consensus 315 -~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 315 -GREVAADYYLGQIYRR 330 (452)
T ss_dssp -TTCHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHC
Confidence 7777777777776643
No 205
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.86 E-value=0.00032 Score=53.08 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhh
Q 033182 5 RSICHSNRGICFLK----LGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 5 ~~~~~~~~~~~~~~----~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
++.+++.+|.+|.. .++++.|+..|+++... .++.+++.+|.+|.. .+++++|+.+ |+++.+.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~-------~~~a~~~ 108 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIW-------YKKAALK 108 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHH-------HHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHH-------HHHHHHC
Confidence 45566667777666 66777777777776654 456677777777776 6677777777 6666553
Q ss_pred CCCcHHHHHHHHHHHHH
Q 033182 77 DPSNNQAKRTILRLQPL 93 (125)
Q Consensus 77 ~p~~~~~~~~l~~~~~~ 93 (125)
+++.+...++.++..
T Consensus 109 --~~~~a~~~Lg~~y~~ 123 (490)
T 2xm6_A 109 --GLPQAQQNLGVMYHE 123 (490)
T ss_dssp --TCHHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHc
Confidence 455666666665543
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.86 E-value=9.1e-05 Score=47.37 Aligned_cols=71 Identities=11% Similarity=-0.071 Sum_probs=64.1
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH----chhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHH
Q 033182 12 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEK----LEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTI 87 (125)
Q Consensus 12 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l 87 (125)
+|.+|...+.++.|+..|+++... .++.+++++|.+|.. .+++++|+.+ |+++.+. +++.+...|
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~-------~~~Aa~~--g~~~a~~~L 99 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY-------YSKACGL--NDQDGCLIL 99 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH-------HHHHHHT--TCHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH-------HHHHHcC--CCHHHHHHH
Confidence 888888888899999999999987 689999999999999 8999999999 9988875 788999999
Q ss_pred HHHHHH
Q 033182 88 LRLQPL 93 (125)
Q Consensus 88 ~~~~~~ 93 (125)
+.++..
T Consensus 100 g~~y~~ 105 (138)
T 1klx_A 100 GYKQYA 105 (138)
T ss_dssp HHHHHH
T ss_pred HHHHHC
Confidence 998865
No 207
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=4.4e-05 Score=56.25 Aligned_cols=67 Identities=10% Similarity=0.158 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALEL------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
....++.++|.+|...|+|.+|+..+.+++.. .|....++...|.+|..+|+|++|... +++++...
T Consensus 133 ~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-------~~~al~~~ 205 (434)
T 4b4t_Q 133 LKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKAS-------LTAARTAA 205 (434)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHH-------HHHHHHHh
Confidence 45678999999999999999999999998766 345578999999999999999999999 66555543
No 208
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.78 E-value=0.00029 Score=51.63 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC----
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNP--TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS---- 79 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~---- 79 (125)
...+..+|.++...|++++|++.+.+.+..+| .+.+++...+.++..+|+.+.|.+. ++++.+.+|+
T Consensus 100 ~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~-------l~~~~~~~~d~~~~ 172 (310)
T 3mv2_B 100 PYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTI-------FDNYTNAIEDTVSG 172 (310)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSCHHHHH
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCcccccc
Confidence 34567899999999999999999999999997 8999999999999999999999999 9999999984
Q ss_pred cHHHHHHHHHH
Q 033182 80 NNQAKRTILRL 90 (125)
Q Consensus 80 ~~~~~~~l~~~ 90 (125)
+..+...+...
T Consensus 173 ~d~~l~~Laea 183 (310)
T 3mv2_B 173 DNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHHHH
T ss_pred chHHHHHHHHH
Confidence 34444555444
No 209
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.78 E-value=0.00011 Score=44.41 Aligned_cols=60 Identities=18% Similarity=0.152 Sum_probs=54.3
Q ss_pred CCCChHHHHHHHHHHHHchh---HHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 36 NPTYMKALIRRAEAHEKLEH---FEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 36 ~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
+|+++..+..+|.+++..++ .++|... ++++++++|+++.+...++.++-..++..++..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~-------l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~ 64 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLL-------LEQALQLEPYNEAALSLIANDHFISFRFQEAID 64 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHH-------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHH-------HHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 68999999999999987776 7999999 999999999999999999999988887777665
No 210
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.71 E-value=0.00017 Score=62.20 Aligned_cols=63 Identities=16% Similarity=0.133 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
.+.+|+++|.++...|++++|+..|.++ +++..|.+.|.++.+.|+|++|+++ |..+.+.++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIey-------L~mArk~~~e 1166 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY-------LQMARKKARE 1166 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhccc
Confidence 4788999999999999999999999886 8999999999999999999999999 8888887744
No 211
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.71 E-value=0.00033 Score=53.74 Aligned_cols=79 Identities=13% Similarity=0.144 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHH------------------------------HHHHHHHchhH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIR------------------------------RAEAHEKLEHF 56 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~------------------------------~~~~~~~~~~~ 56 (125)
..|.++|.|+.++|+|++|++.++++ .++++|.. +...|.+.|++
T Consensus 149 ~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~ 223 (449)
T 1b89_A 149 SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYF 223 (449)
T ss_dssp TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCH
Confidence 45788999999999999999999998 24444444 33566777777
Q ss_pred HHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 57 EEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 57 ~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
++|+.. ++.++.++|.+..+...++-++...+-.
T Consensus 224 eEai~l-------Le~aL~le~ah~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 224 EELITM-------LEAALGLERAHMGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHHH-------HHHHTTSTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHH-------HHHHhCCcHHHHHHHHHHHHHHHhcCHH
Confidence 777777 9999999999999888888777555433
No 212
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.68 E-value=0.00021 Score=43.50 Aligned_cols=44 Identities=16% Similarity=0.139 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRA 47 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~ 47 (125)
.++.++.++|.++.++|+++.|+..+++++.++|++..+..+++
T Consensus 44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 46788999999999999999999999999999999999988887
No 213
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.66 E-value=0.00042 Score=50.51 Aligned_cols=66 Identities=9% Similarity=0.038 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHhcCCC--ChHHHHHHHHHHHHc-----hhHHHHHHhHHHHHHHHHHHHhhCCCc-HHHHHHHHHHHH
Q 033182 21 KFEESIKECTKALELNPT--YMKALIRRAEAHEKL-----EHFEEAIAGIQDLMIVMKKILEFDPSN-NQAKRTILRLQP 92 (125)
Q Consensus 21 ~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~~-----~~~~~A~~~~~~~~~~~~~a~~l~p~~-~~~~~~l~~~~~ 92 (125)
....|....++++++||+ +..+|..+|..|... |+.+.|..+ |+++++++|+. ..++...++...
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~-------ferAL~LnP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA-------FEHLTRYCSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH-------HHHHHHHCCTTCSHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH-------HHHHHHhCCCCCchHHHHHHHHHH
Confidence 457899999999999999 577999999999995 999999999 99999999974 898988888764
Q ss_pred H
Q 033182 93 L 93 (125)
Q Consensus 93 ~ 93 (125)
.
T Consensus 251 ~ 251 (301)
T 3u64_A 251 I 251 (301)
T ss_dssp T
T ss_pred H
Confidence 4
No 214
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.58 E-value=0.00035 Score=51.22 Aligned_cols=69 Identities=10% Similarity=-0.044 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALEL----------NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
+..++| +++++|+|++|...++.+++. +|+++.++.|+..+...+|+ +|.+. ++++.+
T Consensus 214 ~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l-------~~qL~~ 281 (310)
T 3mv2_B 214 QLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDL-------TNQLVK 281 (310)
T ss_dssp HHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHH-------HHHHHH
T ss_pred HHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHH-------HHHHHH
Confidence 345555 899999999999999988887 58999999999999999998 88889 999999
Q ss_pred hCCCcHHHHHH
Q 033182 76 FDPSNNQAKRT 86 (125)
Q Consensus 76 l~p~~~~~~~~ 86 (125)
.+|+++-+...
T Consensus 282 ~~P~hp~i~d~ 292 (310)
T 3mv2_B 282 LDHEHAFIKHH 292 (310)
T ss_dssp TTCCCHHHHHH
T ss_pred hCCCChHHHHH
Confidence 99999886543
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.56 E-value=0.00035 Score=46.17 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 49 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 49 (125)
.+..++|++|..|+++++|++|.+.++++++.+|+|..+...+-.+
T Consensus 69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~i 114 (152)
T 1pc2_A 69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 114 (152)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 5688999999999999999999999999999999999887665544
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.50 E-value=0.0015 Score=49.00 Aligned_cols=86 Identities=9% Similarity=0.068 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCChHHHHHHHHHH-----------------------------------
Q 033182 9 HSNRGICFLKLG---KFEESIKECTKALELNPTYMKALIRRAEAH----------------------------------- 50 (125)
Q Consensus 9 ~~~~~~~~~~~~---~~~~A~~~~~~al~l~p~~~~~~~~~~~~~----------------------------------- 50 (125)
++-+|..++..+ ++.+|+..|+++++++|+++.++..++.+|
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~ 278 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence 445555555543 357788888888888888877776555544
Q ss_pred ---------HHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 51 ---------EKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 51 ---------~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
...|++++|+.. +++++.++|+ ..++..++.++...++..++..
T Consensus 279 ~~~alal~~l~~gd~d~A~~~-------l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e 331 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQA-------INTGIDLEMS-WLNYVLLGKVYEMKGMNREAAD 331 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHH-------HHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHH
Confidence 335667777777 9999999876 5567778888777776665554
No 217
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.46 E-value=0.00095 Score=44.68 Aligned_cols=80 Identities=14% Similarity=0.119 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CC----------------------ChHHHHHHHHHHHHchhHHHH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELN---PT----------------------YMKALIRRAEAHEKLEHFEEA 59 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~---p~----------------------~~~~~~~~~~~~~~~~~~~~A 59 (125)
...++...|..++..++|..|...|++++... ++ ..+..|..+.||.+++++.+|
T Consensus 62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A 141 (167)
T 3ffl_A 62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA 141 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence 45578899999999999999999999987553 11 126889999999999999999
Q ss_pred HHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q 033182 60 IAGIQDLMIVMKKILEFDPSNNQAKRTILRLQP 92 (125)
Q Consensus 60 ~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~ 92 (125)
+.. ++.+-. --..+.+...|++++.
T Consensus 142 i~~-------Le~Ip~-k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 142 IAI-------LDGIPS-RQRTPKINMLLANLYK 166 (167)
T ss_dssp HHH-------HHTSCG-GGCCHHHHHHHHHHCC
T ss_pred HHH-------HhcCCc-hhcCHHHHHHHHHHhc
Confidence 988 653322 2246778888887753
No 218
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.45 E-value=0.001 Score=57.55 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-------------------------CChHHHHHHHHHHHHchhHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNP-------------------------TYMKALIRRAEAHEKLEHFEEAI 60 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-------------------------~~~~~~~~~~~~~~~~~~~~~A~ 60 (125)
+..|..++.++.++|++++|++.++++...++ .+++.+..++..|...|.|++|+
T Consensus 1221 A~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1221 VSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred hhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence 45688888999999999999998888843332 13444556677788888888888
Q ss_pred HhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 61 AGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 61 ~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
.. ++.++.++|.+......++.++....-.
T Consensus 1301 ~L-------lE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1301 TM-------LEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HH-------HHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 88 9999999999988888888777555433
No 219
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.40 E-value=0.00013 Score=56.04 Aligned_cols=73 Identities=11% Similarity=0.057 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
...|.++|.++...|+|++|...|.++ ..|.++|.|+.++|+|++|++. ++++ +++.++.
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea-------~~KA-----~~~~~Wk 181 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDG-------ARKA-----NSTRTWK 181 (449)
T ss_dssp ---------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHH-------HHHH-----TCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHH-------HHHc-----CCchhHH
Confidence 358999999999999999999999877 5789999999999999999999 8877 3455555
Q ss_pred HHHHHHHHHHHHH
Q 033182 86 TILRLQPLAEEKL 98 (125)
Q Consensus 86 ~l~~~~~~~~~~~ 98 (125)
....+....++.+
T Consensus 182 ~v~~aCv~~~ef~ 194 (449)
T 1b89_A 182 EVCFACVDGKEFR 194 (449)
T ss_dssp HHHHHHHHTTCHH
T ss_pred HHHHHHHHcCcHH
Confidence 5555544444333
No 220
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.33 E-value=0.0022 Score=48.02 Aligned_cols=78 Identities=14% Similarity=0.126 Sum_probs=70.3
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
.....+...++.++...|++.+++..+..++..+|-+-..|..+..++...|+..+|+..|++....+..-+-++|+.
T Consensus 168 ~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 168 EDKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 345566778888999999999999999999999999999999999999999999999999888888888888888873
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.16 E-value=0.0011 Score=44.35 Aligned_cols=95 Identities=11% Similarity=0.052 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---------hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTY---------MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-- 76 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~---------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-- 76 (125)
++..-.......+.|+.|+..++.++.+..++ ......+|.++...++|..|...|..++.+.+.+.+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34445556667899999999999988775433 3488999999999999999999966666654422211
Q ss_pred ----------------CCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 77 ----------------DPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 77 ----------------~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+.+.+..+.+..|+..+++.+++..
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~ 143 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIA 143 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHH
Confidence 12234788999999999988876654
No 222
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.0025 Score=46.71 Aligned_cols=87 Identities=13% Similarity=0.095 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh-----
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELN------PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF----- 76 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l----- 76 (125)
+..+++.++...|+++.|+..+++++... +.....+.++|.++...|+|++|... ++.++..
T Consensus 97 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~-------l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 97 LKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLAL-------INDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHHTTSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHH-------HHHHHHHHHhcc
Confidence 34444445444555555555555554432 23467889999999999999999999 5554443
Q ss_pred -CCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182 77 -DPSNNQAKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 77 -~p~~~~~~~~l~~~~~~~~~~~~~~ 101 (125)
.|...+++..++.++...++...+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~ 195 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSK 195 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHH
Confidence 2334557777777777666554443
No 223
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.004 Score=50.64 Aligned_cols=55 Identities=20% Similarity=0.239 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
++.--+.-.+..|+|+-|+....+++..-|....+|+.++.||..+|+|+.|+-.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt 393 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA 393 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence 3444455556689999999999999999999999999999999999999999987
No 224
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=96.89 E-value=0.014 Score=45.29 Aligned_cols=81 Identities=11% Similarity=-0.031 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRT 86 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~ 86 (125)
.++..+|....-...+..|..+|.+|..+.|++...|..+|......|+.-+|+-+ |.+++.-..-.+.+..+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~-------y~rsl~~~~Pf~~a~~n 225 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFY-------YCRSIAVKFPFPAASTN 225 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHH-------HHHHHSSSBCCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHH-------HHHHHhcCCCChhHHHH
Confidence 36677888888888899999999999999999999999999999999999999999 88888776667888888
Q ss_pred HHHHHHHH
Q 033182 87 ILRLQPLA 94 (125)
Q Consensus 87 l~~~~~~~ 94 (125)
|..+....
T Consensus 226 L~~~f~~~ 233 (497)
T 1ya0_A 226 LQKALSKA 233 (497)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776654
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.87 E-value=0.0061 Score=38.94 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 49 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 49 (125)
.+-.+.|.+|..++++|+|..|.+.++.+++.+|+|..+......+
T Consensus 72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 5678999999999999999999999999999999998886655443
No 226
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=96.77 E-value=0.019 Score=41.19 Aligned_cols=67 Identities=13% Similarity=0.097 Sum_probs=60.0
Q ss_pred HHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182 15 CFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL 88 (125)
Q Consensus 15 ~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~ 88 (125)
..++.|+..+|+......++.+|.++.....+.+.++-.|+|+.|... ++.+.+++|+.......+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~Q-------L~~~a~l~p~~~~~a~~yr 72 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQ-------LMQSIKLFPEYLPGASQLR 72 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHHCGGGHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHH-------HHHHHHhCchhhHHHHHHH
Confidence 355789999999999999999999999999999999999999999999 9999999999776554433
No 227
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.52 E-value=0.016 Score=37.38 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 49 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 49 (125)
.+-.+++-+|..+.++|+|+.|.+..+.+++..|+|..+......+
T Consensus 76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4578999999999999999999999999999999998886655444
No 228
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.43 E-value=0.02 Score=46.01 Aligned_cols=67 Identities=12% Similarity=-0.123 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESI-KECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIV 69 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~-~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 69 (125)
|..+.+|+..+......|+.++|. ..+++++...|.+...|+..+......|+++.|...+++++..
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456788999999988899999997 9999999999999999999999999999999999994444443
No 229
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.28 E-value=0.014 Score=38.12 Aligned_cols=46 Identities=15% Similarity=0.129 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEA 49 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~ 49 (125)
.+-.+.|.+|..+.++|+|.+|.+..+.+++.+|+|..+......+
T Consensus 75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 120 (144)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 3567899999999999999999999999999999998876554433
No 230
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=95.93 E-value=0.039 Score=44.32 Aligned_cols=78 Identities=6% Similarity=-0.087 Sum_probs=66.8
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchh---HHHHHHhHHHHHHHHHHHHhhCC
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEH---FEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+|.+...|........+.+.+..+-..|++++...|.....|......-...++ ++.+... |++++...|
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l-------feRal~~~~ 134 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPV-------LARCLSKEL 134 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHH-------HHHHTCSSS
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHH-------HHHHHHhcC
Confidence 477888999999999999999999999999999999999999999999999999 9999988 999999884
Q ss_pred --CcHHHHHH
Q 033182 79 --SNNQAKRT 86 (125)
Q Consensus 79 --~~~~~~~~ 86 (125)
.+.+.+..
T Consensus 135 ~~~sv~LW~~ 144 (679)
T 4e6h_A 135 GNNDLSLWLS 144 (679)
T ss_dssp CCCCHHHHHH
T ss_pred CCCCHHHHHH
Confidence 34444443
No 231
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.57 E-value=0.11 Score=34.37 Aligned_cols=69 Identities=7% Similarity=-0.066 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
.|.+-+. +...++.+.|-..|..++.+...+++.|...|..-..+|+.+.|... +.+++.+.|...+..
T Consensus 63 LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkI-------Lg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 63 IQVRFAE-LKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQL-------LQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTCBCHHHH
T ss_pred HHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHH-------HHHHhccCCCcHHHH
Confidence 3444443 35678999999999999999889999999999999999999999999 999999999876643
No 232
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=94.66 E-value=0.25 Score=29.66 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
+-.+-+++..+...|+|++|+.+.++++..+..|.++. .+..+.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmklt-qs~qa~ 58 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLT-ESEQAH 58 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHH
Confidence 45677899999999999999999999999999999987 444433
No 233
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.40 E-value=0.77 Score=35.28 Aligned_cols=89 Identities=7% Similarity=-0.009 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--CCCcH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELN-PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF--DPSNN 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l--~p~~~ 81 (125)
+...|..+-.+|.+.|++++|...+++....+ +.+...|..+-.++.+.|+.++|... |+...+. .|+ .
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l-------~~~M~~~G~~Pd-~ 175 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV-------DAHMVESEVVPE-E 175 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTCCCC-H
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCCC-H
Confidence 34567888889999999999999999988775 33688888999999999999999999 8887764 354 4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~ 101 (125)
.++..+-..+...++.+++.
T Consensus 176 ~ty~~Li~~~~~~g~~d~A~ 195 (501)
T 4g26_A 176 PELAALLKVSMDTKNADKVY 195 (501)
T ss_dssp HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhCCCHHHHH
Confidence 45666666655555544443
No 234
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=94.33 E-value=0.21 Score=38.27 Aligned_cols=59 Identities=8% Similarity=-0.178 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Q 033182 23 EESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILR 89 (125)
Q Consensus 23 ~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~ 89 (125)
......|++++...|..+..|+..+..+...|+.+.|... |++++.. |.+...+.....
T Consensus 196 ~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i-------~erAi~~-P~~~~l~~~y~~ 254 (493)
T 2uy1_A 196 SRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKV-------VERGIEM-SDGMFLSLYYGL 254 (493)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH-CCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhC-CCcHHHHHHHHh
Confidence 4566799999999999999999999999999999999999 9999999 988766654443
No 235
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.59 E-value=1.5 Score=33.52 Aligned_cols=77 Identities=13% Similarity=-0.081 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHch-hHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLE-HFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
..+|...+....+.++.+.|...|+++ ...+.....|...+..-...+ +.+.|... |+.+++.-|+.++.+
T Consensus 286 ~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~i-------fe~al~~~~~~~~~~ 357 (493)
T 2uy1_A 286 DLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNI-------FSSGLLKHPDSTLLK 357 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHH-------HHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHH-------HHHHHHHCCCCHHHH
Confidence 356777777777888899999999999 443345566666666666666 48888888 999998888887755
Q ss_pred HHHHHH
Q 033182 85 RTILRL 90 (125)
Q Consensus 85 ~~l~~~ 90 (125)
....+.
T Consensus 358 ~~yid~ 363 (493)
T 2uy1_A 358 EEFFLF 363 (493)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 236
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=93.36 E-value=0.66 Score=27.11 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.+...|.-.-..|+|++|+..|+.|+.+|..++...|+..
T Consensus 21 ~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~ 60 (83)
T 2w2u_A 21 KYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGS 60 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSS
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 3445556667889999999999999999999999877644
No 237
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=93.30 E-value=0.41 Score=31.60 Aligned_cols=88 Identities=11% Similarity=0.012 Sum_probs=64.3
Q ss_pred ChhHHHHHHHHHHHHHHHhcCH------HHHHHHHHHHHhcCCC--------ChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182 1 MAELRSICHSNRGICFLKLGKF------EESIKECTKALELNPT--------YMKALIRRAEAHEKLEHFEEAIAGIQDL 66 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~------~~A~~~~~~al~l~p~--------~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 66 (125)
|.|.+...|.+......+.|+. +.-...|++|+..-|. +...|.+.|.. ...++.++|.+.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~v---- 82 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDY---- 82 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHH----
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHH----
Confidence 3567778888888888888888 8888999999987663 45667777755 566888888888
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHHHH
Q 033182 67 MIVMKKILEFDPSNNQAKRTILRLQPLAEE 96 (125)
Q Consensus 67 ~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~ 96 (125)
|+.++.++.....++...+....+.+.
T Consensus 83 ---y~~a~~~hKkFAKiwi~~AqFEiRqgn 109 (161)
T 4h7y_A 83 ---FQMARANCKKFAFVHISFAQFELSQGN 109 (161)
T ss_dssp ---HHHHHHHCTTBHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHhHHHHHHHHHHHHHHHHccc
Confidence 999988877776666655555544443
No 238
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=92.63 E-value=0.95 Score=26.95 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
.+...|.-.-..|+|++|+..|..++.+|..+++..|+...
T Consensus 17 ~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~ 57 (93)
T 1wfd_A 17 AVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSK 57 (93)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 34556666678899999999999999999999998877554
No 239
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=92.47 E-value=0.92 Score=26.42 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=32.2
Q ss_pred HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 43 LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 43 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+...|.-.-..|+|++|+..|+.++.+|..+++..|+...
T Consensus 14 lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~ 53 (83)
T 2v6y_A 14 YAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVA 53 (83)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 3445556678899999999999999999999998876543
No 240
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=92.04 E-value=1.4 Score=27.46 Aligned_cols=42 Identities=19% Similarity=0.381 Sum_probs=32.7
Q ss_pred HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHH
Q 033182 44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKR 85 (125)
Q Consensus 44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~ 85 (125)
...|.-.-..|+|++|+..|..++.+|..+++..|.+.....
T Consensus 22 v~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~ 63 (117)
T 2cpt_A 22 ASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQ 63 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHH
Confidence 444445567799999999999999999999998866655433
No 241
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=91.79 E-value=1.2 Score=26.18 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
.+...|.-.-..|+|++|+..|+.|+.+|..++...|+...
T Consensus 18 ~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~ 58 (86)
T 4a5x_A 18 TVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTK 58 (86)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 34455566678899999999999999999999998887543
No 242
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=90.82 E-value=1.5 Score=25.48 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=32.0
Q ss_pred HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHH
Q 033182 43 LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQ 82 (125)
Q Consensus 43 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~ 82 (125)
+...|.-.-..|+|++|+..|..++.+|..+++..|+...
T Consensus 16 l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~ 55 (85)
T 2v6x_A 16 LVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKS 55 (85)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 3445555677899999999999999999999998876443
No 243
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=90.30 E-value=3.1 Score=28.32 Aligned_cols=70 Identities=13% Similarity=0.098 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHH--hc---------------CCCChH-HHHHHHHHHHHchhHHHHHHhHHHHHH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKAL--EL---------------NPTYMK-ALIRRAEAHEKLEHFEEAIAGIQDLMI 68 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al--~l---------------~p~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~ 68 (125)
+..+-.+.||.+..+|..|+...+..+ .. ||.+-+ .+.-+|..++..|.-++|+.+
T Consensus 63 Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y------ 136 (242)
T 3kae_A 63 TSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGH------ 136 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhH------
Confidence 445567899999999999999999998 22 234444 455689999999999999999
Q ss_pred HHHHHHhhCCCcHHH
Q 033182 69 VMKKILEFDPSNNQA 83 (125)
Q Consensus 69 ~~~~a~~l~p~~~~~ 83 (125)
+.+.....|-.+.+
T Consensus 137 -~~~Sf~~~~lf~~v 150 (242)
T 3kae_A 137 -YVRSFGKSFLFSPV 150 (242)
T ss_dssp -HHHHHHHCCCHHHH
T ss_pred -hhhhcCCccccchH
Confidence 77776666654443
No 244
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.33 E-value=0.92 Score=35.44 Aligned_cols=70 Identities=10% Similarity=0.004 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-----CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNP-----TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
..++++.-+-..|...+.|+.|....+++.--.+ .....+|..|.++.-+++|.+|..+ +..|++..|
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~-------L~~A~rkap 301 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEY-------IIAAIRKAP 301 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHTSSCS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHH-------HHHHHHhCC
Confidence 4567788888889999999999999998852211 1256777889999999999999999 999999877
Q ss_pred Cc
Q 033182 79 SN 80 (125)
Q Consensus 79 ~~ 80 (125)
.+
T Consensus 302 ~~ 303 (523)
T 4b4t_S 302 HN 303 (523)
T ss_dssp CS
T ss_pred cc
Confidence 54
No 245
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=88.55 E-value=3.3 Score=31.70 Aligned_cols=77 Identities=9% Similarity=0.060 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--CCCcH
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNP-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF--DPSNN 81 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l--~p~~~ 81 (125)
+...|..+-.+|.+.|++++|...++.....+- .+...|..+-.++.+.|+.++|... +++..+. .|+..
T Consensus 139 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~l-------l~~Mr~~g~~ps~~ 211 (501)
T 4g26_A 139 RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT-------LQRLRDLVRQVSKS 211 (501)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHTSSBCHH
T ss_pred ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHH-------HHHHHHhCCCcCHH
Confidence 345677888889999999999999999888763 3578889999999999999999999 8877654 45533
Q ss_pred HHHHHHHH
Q 033182 82 QAKRTILR 89 (125)
Q Consensus 82 ~~~~~l~~ 89 (125)
++..+..
T Consensus 212 -T~~~l~~ 218 (501)
T 4g26_A 212 -TFDMIEE 218 (501)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 3334433
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.99 E-value=8.6 Score=28.36 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=61.7
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC--C------C--C------------hHHHHHHHHHHHHchhHHHHHHhHHHHHH
Q 033182 11 NRGICFLKLGKFEESIKECTKALELN--P------T--Y------------MKALIRRAEAHEKLEHFEEAIAGIQDLMI 68 (125)
Q Consensus 11 ~~~~~~~~~~~~~~A~~~~~~al~l~--p------~--~------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 68 (125)
..|......|+.+.|...+++++.+= | . + ..+...++.++...|++.+|+..
T Consensus 120 ~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~------ 193 (388)
T 2ff4_A 120 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE------ 193 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH------
Confidence 33433444678999999999998873 1 1 1 12444577888899999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182 69 VMKKILEFDPSNNQAKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 69 ~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 101 (125)
+.+++..+|-+...+..+-.++...++..++.
T Consensus 194 -l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al 225 (388)
T 2ff4_A 194 -LEALTFEHPYREPLWTQLITAYYLSDRQSDAL 225 (388)
T ss_dssp -HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred -HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999988888877776666554443
No 247
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=84.72 E-value=4.3 Score=27.44 Aligned_cols=39 Identities=13% Similarity=-0.027 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChH
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMK 41 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~ 41 (125)
....+..|-+|..++..++|.+|..++..|+..-|....
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 356788999999999999999999999999998776543
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=84.71 E-value=6.8 Score=26.10 Aligned_cols=46 Identities=15% Similarity=0.013 Sum_probs=38.7
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHH
Q 033182 14 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQ 64 (125)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~ 64 (125)
...++.|+++.|...++.. ++...|..+|..-+..|+++-|..+|+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3446789999998887765 678899999999999999999999933
No 249
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=82.76 E-value=4.1 Score=32.52 Aligned_cols=51 Identities=16% Similarity=0.100 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEA 59 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A 59 (125)
...++...+..|+|..|....+.++..+|++..+...++.+|.++|.-.+.
T Consensus 452 ~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 452 LLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 456777778899999999999999999999999999999999998865443
No 250
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=81.92 E-value=9.4 Score=29.92 Aligned_cols=44 Identities=16% Similarity=0.122 Sum_probs=32.6
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHH
Q 033182 17 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQD 65 (125)
Q Consensus 17 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 65 (125)
.+.|++++|.+.+ ...++...|..+|..+.+.++++.|...|++
T Consensus 663 l~~~~~~~A~~~~-----~~~~~~~~W~~la~~al~~~~~~~A~~~y~~ 706 (814)
T 3mkq_A 663 LKVGQLTLARDLL-----TDESAEMKWRALGDASLQRFNFKLAIEAFTN 706 (814)
T ss_dssp HHHTCHHHHHHHH-----TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHH-----HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4456666655543 2235688999999999999999999999443
No 251
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=81.79 E-value=7.6 Score=29.09 Aligned_cols=61 Identities=8% Similarity=0.119 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc----C-C-CChHHHHHHHHHHHHchhHHHHHHhHHHHHHH
Q 033182 9 HSNRGICFLKLGKFEESIKECTKALEL----N-P-TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIV 69 (125)
Q Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~al~l----~-p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 69 (125)
-.++|..|+..|+|.+|...+.+...- | + .-.+.+..-..+|..++++..+...++.+.-+
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 347899999999999999988887653 2 1 23678888899999999999999995555444
No 252
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=79.96 E-value=8.1 Score=30.28 Aligned_cols=55 Identities=20% Similarity=0.143 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH--------hcCCCChHHHHHHHHHHHHchhHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKAL--------ELNPTYMKALIRRAEAHEKLEHFEEAI 60 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al--------~l~p~~~~~~~~~~~~~~~~~~~~~A~ 60 (125)
...|.++|..+.+.++++.|+..|.++- ..-..+.+....++......|++..|.
T Consensus 681 ~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~ 743 (814)
T 3mkq_A 681 EMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAF 743 (814)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHH
Confidence 5689999999999999999999999862 112334444444444444444444443
No 253
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.60 E-value=3.6 Score=30.85 Aligned_cols=55 Identities=13% Similarity=0.061 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELN---PTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~---p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
++..+|..|.+.|++++|.+.+.++...- ......++....++...++|..+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~ 190 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEK 190 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 45567888888888888888888766542 23467777777778888888888877
No 254
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=79.31 E-value=4.5 Score=24.22 Aligned_cols=28 Identities=36% Similarity=0.369 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKAL 33 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al 33 (125)
+-.+..++..+.+.|+|++|+.+..++.
T Consensus 15 AH~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 15 AHQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 4567789999999999999999887765
No 255
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=77.87 E-value=9.5 Score=30.41 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 100 (125)
......|......|+|..|... ...++..+|+|.+++..+.+++.++..+.+.
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l-------~~~~~~~~p~~~~a~~l~a~~~~~l~~~~~~ 502 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEV-------VNRLVFAEPDNRAARELQADALEQLGYQAEN 502 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHCCCHHHHHHH-------HHHHHhcCCCcHHHHHHHHHHHHHHHHhccC
Confidence 4566778888899999999999 9999999999999999999999998865433
No 256
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=76.68 E-value=3.7 Score=33.50 Aligned_cols=54 Identities=13% Similarity=-0.002 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~~ 102 (125)
.+.--+..+...|+|+-|+.. -++++...|+.=.+|..|.+++..+++...+-.
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~-------Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALL 392 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGV-------SNTSTELALDSFESWYNLARCHIKKEEYEKALF 392 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHH-------HHHHHhcCchhhHHHHHHHHHHHHhccHHHHHH
Confidence 444557777889999999999 999999999999999999999999998876543
No 257
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=75.60 E-value=38 Score=29.04 Aligned_cols=79 Identities=8% Similarity=-0.093 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh--CCCcH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALEL----NPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF--DPSNN 81 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l--~p~~~ 81 (125)
-|.-+-.+|++.|+.++|...+...... -.-+...|.-+-..+++.|+.++|... |+...+. .|+..
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~L-------f~eM~~~G~~PDvv 201 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV-------LFMVKDAGLTPDLL 201 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHH-------HHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHH-------HHHHHHcCCCCcHH
Confidence 4677788999999999999999765433 134688999999999999999999999 9888764 56644
Q ss_pred HHHHHHHHHHHHH
Q 033182 82 QAKRTILRLQPLA 94 (125)
Q Consensus 82 ~~~~~l~~~~~~~ 94 (125)
. +..+....-+.
T Consensus 202 T-YntLI~glcK~ 213 (1134)
T 3spa_A 202 S-YAAALQCMGRQ 213 (1134)
T ss_dssp H-HHHHHHHHHHH
T ss_pred H-HHHHHHHHHhC
Confidence 4 44444444333
No 258
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=75.05 E-value=6.8 Score=30.28 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
++..+|...+-...+..|..+ |.+|..++|++...+..|+.+....++.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~-------Y~~A~~~~P~~G~~~nqLavla~~~~~~ 202 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESY-------YRHAAQLVPSNGQPYNQLAILASSKGDH 202 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCTTBSHHHHHHHHHHHHTTCH
T ss_pred HHHHcccHHHHHHHHHHHHHH-------HHHHHHhCCCCCchHHHHHHHHhccccc
Confidence 556788888888888999999 9999999999999999999988764433
No 259
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.65 E-value=9.4 Score=21.64 Aligned_cols=38 Identities=11% Similarity=0.135 Sum_probs=31.1
Q ss_pred HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHH
Q 033182 44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTIL 88 (125)
Q Consensus 44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~ 88 (125)
..+|+.+...|++++|..+ |-+|+..-|.-.+....+.
T Consensus 21 V~~GE~L~~~g~~~~~~~h-------f~nAl~Vc~qP~~LL~i~q 58 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDH-------LTNAIAVCGQPQQLLQVLQ 58 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHH-------HHHHHHTCSSCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHH-------HHHHHHHcCCHHHHHHHHH
Confidence 4589999999999999999 9999999888766554443
No 260
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.98 E-value=13 Score=23.02 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=37.9
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHHH
Q 033182 20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS----NNQAKRTILRLQPLAE 95 (125)
Q Consensus 20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~----~~~~~~~l~~~~~~~~ 95 (125)
..+..|..+..++|.+|- .|+.+.|+..|..+..-+++++.+... ..+.|.....+..++.
T Consensus 17 ~~h~~AF~~Is~AL~~DE---------------~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~ 81 (116)
T 2dl1_A 17 EAYKKAFLFVNKGLNTDE---------------LGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMK 81 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH---------------HTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 345556666666655543 477777888877777779999998763 2334444444444333
No 261
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=72.40 E-value=24 Score=30.22 Aligned_cols=65 Identities=5% Similarity=-0.032 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHchhH-HHHHHhHHHHHHHHHHHHhh
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELN-PTYMKALIRRAEAHEKLEHF-EEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~-~~A~~~~~~~~~~~~~a~~l 76 (125)
+...|.-+-..|.+.|++++|...|++....+ .-+...|..+-.++++.|+. ++|... |+...+.
T Consensus 164 dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~L-------l~EM~~k 230 (1134)
T 3spa_A 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC-------LEQMSQE 230 (1134)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHH-------HHHHHHH
T ss_pred CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHc
Confidence 45678888899999999999999999988776 34688888888899999984 677777 6666553
No 262
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=71.27 E-value=20 Score=23.83 Aligned_cols=27 Identities=15% Similarity=-0.124 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKA 32 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a 32 (125)
...|..+|...+..|+++-|+.+|.++
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 567999999999999999999999876
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=70.20 E-value=14 Score=26.39 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHH
Q 033182 2 AELRSICHSNRGICFLKLGKFEESIKECTKALELNPTYMKAL 43 (125)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~ 43 (125)
+|.++.....+...++-.|+|+.|...+..+.+++|.....-
T Consensus 27 ~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a 68 (273)
T 1zbp_A 27 SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 68 (273)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHH
T ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 366777788888888889999999999999999999976653
No 264
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=67.17 E-value=14 Score=21.39 Aligned_cols=32 Identities=6% Similarity=0.153 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
..+.-+...|.-.-..|+|++|+..|..++..
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555777787777889999999999888743
No 265
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=65.23 E-value=26 Score=22.90 Aligned_cols=52 Identities=15% Similarity=0.086 Sum_probs=38.3
Q ss_pred HHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 17 LKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 17 ~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
..+|+-++-.+.+...+.-+|-++..++.+|.+|.+.|+-.+|.+. +.+|-+
T Consensus 102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL-------l~~AC~ 153 (172)
T 1wy6_A 102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL-------LIEACK 153 (172)
T ss_dssp HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHH
T ss_pred HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH-------HHHHHH
Confidence 3455555555555554555677799999999999999999999999 777766
No 266
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=61.27 E-value=15 Score=21.87 Aligned_cols=34 Identities=12% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHH
Q 033182 44 IRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAK 84 (125)
Q Consensus 44 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~ 84 (125)
..+|+.+...|+++.|+.+ |-+|+..-|.-.+..
T Consensus 24 V~lGE~L~~~g~~e~av~H-------f~nAl~Vc~qP~~LL 57 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDH-------LTNAIAVCGQPQQLL 57 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHH-------HHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHH-------HHHHHHHcCCHHHHH
Confidence 3589999999999999998 778888777754433
No 267
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=60.08 E-value=12 Score=28.58 Aligned_cols=64 Identities=2% Similarity=-0.123 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC--------C--CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh-CC
Q 033182 10 SNRGICFLKLGKFEESIKECTKALELN--------P--TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF-DP 78 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~l~--------p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l-~p 78 (125)
.++-.+|++.|+...+...+...-... | .....+|.+|..+...++|.+|... +..|++. -|
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~-------L~~A~~~lcp 252 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQ-------FNEAFQSLLN 252 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHH-------HHHHHHhcCC
Confidence 356678889999887766665432222 1 2356888999999999999999999 8888887 55
Q ss_pred Cc
Q 033182 79 SN 80 (125)
Q Consensus 79 ~~ 80 (125)
..
T Consensus 253 ~~ 254 (455)
T 3t5v_B 253 LP 254 (455)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 268
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=59.96 E-value=20 Score=20.62 Aligned_cols=29 Identities=28% Similarity=0.200 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALE 34 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 34 (125)
+.-+..+|.-.=+.|+|++|+..|..++.
T Consensus 19 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 19 ARKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 44466677777778899998888887764
No 269
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=57.21 E-value=22 Score=20.04 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 033182 11 NRGICFLKLGKFEESIKECTKALELNPTYM 40 (125)
Q Consensus 11 ~~~~~~~~~~~~~~A~~~~~~al~l~p~~~ 40 (125)
.+|..+...|++++|..+|-+|+..-|.-.
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 678888889999999999999998876543
No 270
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=57.18 E-value=38 Score=26.82 Aligned_cols=53 Identities=9% Similarity=-0.114 Sum_probs=43.0
Q ss_pred HHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 16 FLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 16 ~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
.++.|++..|...+...-.-.+...+..|=+|.++..+|+.++|... |+++.+
T Consensus 295 Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~-------~~~~a~ 347 (618)
T 1qsa_A 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEI-------LHQLMQ 347 (618)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHT
T ss_pred HHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHH-------HHHHhc
Confidence 34679999999999776554446788899999999999999999998 766654
No 271
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=56.55 E-value=24 Score=20.13 Aligned_cols=31 Identities=26% Similarity=0.164 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
.+.-+..+|.-.=+.|+|++|+..|..++..
T Consensus 10 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 10 MARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3444666777777788999988888877643
No 272
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=54.52 E-value=27 Score=23.43 Aligned_cols=34 Identities=9% Similarity=-0.093 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCc
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSN 80 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~ 80 (125)
...+|.+|..++..++|.+|... +..|++.-|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~-------L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEY-------LSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHH-------HHHHHHHCCHh
Confidence 56788899999999999999999 99999987754
No 273
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=52.88 E-value=27 Score=21.44 Aligned_cols=30 Identities=20% Similarity=0.303 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALE 34 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 34 (125)
++..+..+|.-.=..|+|++|+..|..++.
T Consensus 17 kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 17 KAIDLASKAAQEDKAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344566677666667899999988888764
No 274
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=52.25 E-value=27 Score=29.57 Aligned_cols=68 Identities=6% Similarity=-0.047 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHh---cC--------------------CCChHHHHHHHHHHHHchhHHHHHHhH
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALE---LN--------------------PTYMKALIRRAEAHEKLEHFEEAIAGI 63 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~---l~--------------------p~~~~~~~~~~~~~~~~~~~~~A~~~~ 63 (125)
..-+-+|.++...|++++|...|.++-. .+ ...+..|+.....+.+.+.++.+++.
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~f- 921 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF- 921 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHH-
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHH-
Confidence 3457789999999999999999988621 11 11235567777888888999999988
Q ss_pred HHHHHHHHHHHhhCC-CcH
Q 033182 64 QDLMIVMKKILEFDP-SNN 81 (125)
Q Consensus 64 ~~~~~~~~~a~~l~p-~~~ 81 (125)
-+.|++..+ ++.
T Consensus 922 ------a~lAi~~~~~~~~ 934 (1139)
T 4fhn_B 922 ------SLLADASKETDDE 934 (1139)
T ss_dssp ------HHHHHHHCCSCCH
T ss_pred ------HHHHHHhccCCCh
Confidence 777777654 443
No 275
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=57.26 E-value=3 Score=33.43 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHH
Q 033182 10 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIA 61 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~ 61 (125)
..++...+..|+|..|....+.++..+|++..+...++.+|.++|.-.+...
T Consensus 465 ~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~~~ 516 (668)
T 2yhe_A 465 LKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTENAL 516 (668)
Confidence 4566667788999999999999999999999999999999999997765544
No 276
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=51.70 E-value=72 Score=23.76 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------C-CChHHHHHHHHHHH-HchhHHHHHHhHHHHHHHHHHHH
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELN------P-TYMKALIRRAEAHE-KLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~------p-~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
....++......|...+++..+...+.++.... | ..+....--|..++ ..++|..|... |-.++
T Consensus 137 ~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~-------F~eaf 208 (394)
T 3txn_A 137 LLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSY-------FYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHH-------HHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHH-------HHHHH
Confidence 456678888899999999999999998876543 2 12445666788888 89999999998 76665
No 277
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=51.64 E-value=31 Score=20.12 Aligned_cols=30 Identities=3% Similarity=0.244 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 033182 6 SICHSNRGICFLKLGKFEESIKECTKALEL 35 (125)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~l 35 (125)
+.-+...|.-.=..|+|++|+..|..++..
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 344667777777788999988888877643
No 278
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=51.62 E-value=55 Score=27.21 Aligned_cols=69 Identities=6% Similarity=-0.030 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHh-cCC----------------------CChHHHHHHHHHHHHchhHHHHHHhHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALE-LNP----------------------TYMKALIRRAEAHEKLEHFEEAIAGIQ 64 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~-l~p----------------------~~~~~~~~~~~~~~~~~~~~~A~~~~~ 64 (125)
.-|-+|.+|...|++++|...|++|-. +.. .....|......+.+.+-++.++..
T Consensus 842 ~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~f-- 919 (950)
T 4gq2_M 842 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEF-- 919 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHH--
Confidence 346799999999999999999987631 111 0123667778888888888888888
Q ss_pred HHHHHHHHHHhh-CCCcHHH
Q 033182 65 DLMIVMKKILEF-DPSNNQA 83 (125)
Q Consensus 65 ~~~~~~~~a~~l-~p~~~~~ 83 (125)
.+.|++. +++++..
T Consensus 920 -----A~lAI~~~~~dd~~l 934 (950)
T 4gq2_M 920 -----SLLADASKETDDEDL 934 (950)
T ss_dssp -----HHHHHHTCCSCCHHH
T ss_pred -----HHHHHhhcccCCccc
Confidence 8888864 4555543
No 279
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=48.60 E-value=23 Score=24.59 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=30.3
Q ss_pred HHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q 033182 47 AEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQ 91 (125)
Q Consensus 47 ~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~ 91 (125)
-.++++.|.|++|... +++.+.-+|++......|..+-
T Consensus 121 V~VCiek~~f~kA~ei-------Lkr~~~~~~s~~kLr~kL~~II 158 (235)
T 3bu8_A 121 VIICIKNKEFEKASKI-------LKKHMSKDPTTQKLRNDLLNII 158 (235)
T ss_dssp HHHHHHTTCHHHHHHH-------HHHHSTTCGGGHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHH-------HHHHhcCCCCchHHHHHHHHHH
Confidence 3456789999999999 9999998888777766666553
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=48.04 E-value=84 Score=24.87 Aligned_cols=72 Identities=10% Similarity=-0.129 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHH
Q 033182 22 FEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEKM 101 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~~ 101 (125)
..++...+.+.....+++...-...+.++ ..|+++.|..+ |.+.-.-.++.....+++++.....++..++.
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~e~~~r~Al-r~~d~~~a~~~-------~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~ 339 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTSLIERRVRMAL-GTGDRRGLNTW-------LARLPMEAKEKDEWRYWQADLLLERGREAEAK 339 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHHHHHHHHHHHH-HHTCHHHHHHH-------HHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHhccccCCChHHHHHHHHHHH-HCCCHHHHHHH-------HHHccccccccHhHHHHHHHHHHHcCCHHHHH
Confidence 44555556665544443333333444444 56999999999 87655533456778899999887776655443
No 281
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=46.45 E-value=77 Score=26.80 Aligned_cols=58 Identities=9% Similarity=-0.059 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-Ch----HHHHHHHHHHHHchhHHHHHHh
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT-YM----KALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~-~~----~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.+..|+.....+.+.+.++.++.....|+...+. +. ..|.+.-..+..+|+|++|-..
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 3467888888888899999999999999987543 32 2678888999999999999766
No 282
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=45.66 E-value=53 Score=25.06 Aligned_cols=37 Identities=8% Similarity=0.010 Sum_probs=32.1
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCCC
Q 033182 3 ELRSICHSNRGICFLKLGKFEESIKECTKALEL-NPTY 39 (125)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l-~p~~ 39 (125)
....+++|-.|..++-.++|.+|..++..|+.. -|..
T Consensus 217 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 217 DQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 356788999999999999999999999999988 5543
No 283
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=44.79 E-value=4.6 Score=28.63 Aligned_cols=40 Identities=15% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcH
Q 033182 42 ALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNN 81 (125)
Q Consensus 42 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~ 81 (125)
.....|.-+-..|+|++|...|+.|+.+|..+++.+|+..
T Consensus 25 ~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~ 64 (257)
T 2ymb_A 25 TVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNT 64 (257)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 3555666667789999999999999999999998876543
No 284
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=44.74 E-value=71 Score=21.68 Aligned_cols=79 Identities=16% Similarity=0.236 Sum_probs=50.2
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh----------------
Q 033182 12 RGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE---------------- 75 (125)
Q Consensus 12 ~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~---------------- 75 (125)
++....-.|+|..++-.+. +-+-..+.+-.+.|+.++.+|..|+.. ++..++
T Consensus 39 ~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~-------le~il~~kvd~d~~~d~~~~~f 106 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKS-------LESILEGKVERDPDVDARIQEM 106 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHTTCSBCCCCCCHHHHTT
T ss_pred hhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHhcccccCccccccccee
Confidence 3444445677776655432 224567788899999999999999999 777762
Q ss_pred -hCCCcHH-HHHHHHHHHHHHHHHHHHHH
Q 033182 76 -FDPSNNQ-AKRTILRLQPLAEEKLEKMK 102 (125)
Q Consensus 76 -l~p~~~~-~~~~l~~~~~~~~~~~~~~~ 102 (125)
.||.+.+ ....++.+..+.+..+++.+
T Consensus 107 fvd~~DkEfFy~l~a~lltq~g~r~EaI~ 135 (242)
T 3kae_A 107 FVDPGDEEFFESLLGDLCTLSGYREEGIG 135 (242)
T ss_dssp SCCTTCHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred eeccchHHHHHHHHHHHHHHhcCHHHhhh
Confidence 2344544 34445555555555554443
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.45 E-value=79 Score=23.43 Aligned_cols=65 Identities=6% Similarity=-0.130 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCC---hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALEL---NPTY---MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l---~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
....++.+...+++..++|..+.....++-.+ +++. .+.....|..+...++|..|... |..++.
T Consensus 166 ~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~-------f~e~~~ 236 (429)
T 4b4t_R 166 AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKL-------LVDSLA 236 (429)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHH-------HHHHhc
Confidence 34567788888888999999999999998655 2221 23455567788899999999998 666554
No 286
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.10 E-value=1.2e+02 Score=23.63 Aligned_cols=36 Identities=8% Similarity=-0.086 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALELNPTY 39 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~ 39 (125)
....+++-.|..+.-.++|.+|..++..|+..-|..
T Consensus 268 q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 268 LEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 446788899999999999999999999999987654
No 287
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=47.52 E-value=5.6 Score=31.92 Aligned_cols=53 Identities=15% Similarity=0.134 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHH
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEKLEK 100 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~~~~ 100 (125)
......|......|+|..|... ...++..+|+|.+++..+.+.++++..+.+.
T Consensus 462 ~~~~~~a~~~~~~g~~~wa~~l-------~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~~ 514 (668)
T 2yhe_A 462 DAVLKQMRAAIDKGDYRWAVQL-------GNHLVFADPANKDARALQADAMEQLGYQTEN 514 (668)
Confidence 3455677777888999999998 9999999999999999999999988866544
No 288
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=41.32 E-value=76 Score=26.37 Aligned_cols=51 Identities=10% Similarity=-0.027 Sum_probs=37.9
Q ss_pred HHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHH
Q 033182 13 GICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKIL 74 (125)
Q Consensus 13 ~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~ 74 (125)
.......+.++-+ ...+..=|.++-.-|-+|.++...|++++|... |++|-
T Consensus 817 ~~~L~~~~~~~~a----~eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~-------F~kAA 867 (950)
T 4gq2_M 817 VEKLFLFKQYNAC----MQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRC-------FKTTS 867 (950)
T ss_dssp HHHHHHTTCHHHH----HHHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHH-------HHTCC
T ss_pred HHHHHHhcHHHHH----HHHHhhcCCChHHHHHHHHHHHHcCCHHHHHHH-------HHHHh
Confidence 3344456666643 334555677888889999999999999999999 87654
No 289
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=40.91 E-value=71 Score=20.56 Aligned_cols=30 Identities=3% Similarity=-0.056 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 033182 7 ICHSNRGICFLKLGKFEESIKECTKALELN 36 (125)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~al~l~ 36 (125)
.+|...|..+...|++.+|...|...++.+
T Consensus 102 lfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 102 PLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344444444444555555555555544443
No 290
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=40.56 E-value=74 Score=23.77 Aligned_cols=41 Identities=15% Similarity=-0.004 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHchhHHHHHHh
Q 033182 22 FEESIKECTKALELNP--------TYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p--------~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
|+..+.+++.|+..=| +..-++..+|.+|+-.++|++|...
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~ 212 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDL 212 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4557777777776543 3356888899999999999999998
No 291
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=39.99 E-value=56 Score=19.16 Aligned_cols=60 Identities=13% Similarity=0.056 Sum_probs=30.8
Q ss_pred cCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC-cHHHHHHHHHHH
Q 033182 20 GKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS-NNQAKRTILRLQ 91 (125)
Q Consensus 20 ~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~-~~~~~~~l~~~~ 91 (125)
..|..|..+..+++..|-.+. .|+.++|+.+|.++..-+.+.+.+... ..+.|..-..++
T Consensus 11 ~~h~~AF~~Is~aL~~DE~~~------------~G~k~~A~~~YkkGi~eL~~Gi~V~~~g~G~~we~Ar~LQ 71 (89)
T 3eab_A 11 VFHKQAFEYISIALRIDEDEK------------AGQKEQAVEWYKKGIEELEKGIAVIVTGQGEQCERARRLQ 71 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHSC------------SSSGGGSHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccc------------CCCHHHHHHHHHHHHHHHHhhcCCccCCCChhHHHHHHHH
Confidence 345666666666665542210 144555555555555558888886433 333344333333
No 292
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=39.52 E-value=18 Score=24.74 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=25.7
Q ss_pred HHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q 033182 46 RAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRL 90 (125)
Q Consensus 46 ~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~ 90 (125)
.-.++++.|.|++|... +++...-+|++......|..+
T Consensus 123 AV~VCiekg~Fk~A~ei-------Lkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 123 AIAVCMENGNFKEAEEV-------FERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHTTCHHHHHHH-------HHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHccchHHHHHH-------HHHHhcCCCCchHHHHHHHHH
Confidence 44677899999999999 999999887776655555544
No 293
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.43 E-value=77 Score=20.59 Aligned_cols=59 Identities=15% Similarity=0.159 Sum_probs=42.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hHHHHH-HHH--HHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 10 SNRGICFLKLGKFEESIKECTKALELNPTY------MKALIR-RAE--AHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~------~~~~~~-~~~--~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
+..+..++..|+|-+|-+.++.+-...+.. ..+... ++. .+...||..-|... +.+++.
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~l-------l~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSL-------FRTSLQ 103 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-------HHHHHH
Confidence 455667778899999999999988776543 334444 333 44567899999999 776665
No 294
>2npu_A FKBP12-rapamycin complex-associated protein; four-helix bundle, transferase; NMR {Homo sapiens}
Probab=39.13 E-value=70 Score=19.98 Aligned_cols=79 Identities=8% Similarity=-0.071 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC--CcHHHHHHH
Q 033182 10 SNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP--SNNQAKRTI 87 (125)
Q Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p--~~~~~~~~l 87 (125)
...+.+|+..++.+..+..+......-...++..........--.+..+|..+ +++..+-.. +...++...
T Consensus 44 eeASrlyf~~~n~~~m~~~L~pLh~~l~~~PeT~~E~sF~~~fG~~L~~A~~~-------~~~y~~t~d~~~lnqAWd~Y 116 (126)
T 2npu_A 44 EEASRLYFGERNVKGMFEVLEPLHAMMERGPQTLKETSFNQAYGRDLMEAQEW-------CRKYMKSGNVKDLTQAWDLY 116 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHH-------HHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhcccCHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHhHHHHHHHHH-------HHHHHHhCChhHHHHHHHHH
Confidence 35566777778888887777665332222233344445555555566777777 666553221 122466666
Q ss_pred HHHHHHHH
Q 033182 88 LRLQPLAE 95 (125)
Q Consensus 88 ~~~~~~~~ 95 (125)
..+.+++.
T Consensus 117 ~~Vf~rI~ 124 (126)
T 2npu_A 117 YHVFRRIS 124 (126)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66665543
No 295
>3ph0_C ASCG; type III secretion system, chapero; 2.40A {Aeromonas hydrophila}
Probab=38.79 E-value=47 Score=17.91 Aligned_cols=53 Identities=6% Similarity=-0.101 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHH
Q 033182 8 CHSNRGICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAI 60 (125)
Q Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~ 60 (125)
.+..++..-...-..++|....+..-..+...-.+-.-+...++..|.|++|+
T Consensus 8 lLAe~AL~~TG~HcH~EA~tIA~~L~~~~~~eE~v~mIr~~SLmNrG~Yq~Al 60 (61)
T 3ph0_C 8 QLAELALAGTGHHCHQEAASIADWLAQEECMAECVTLIRLSSLMNQGDYQRAL 60 (61)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHTSSTTHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHccchHhHhh
Confidence 34444544444556788877666554444444555666778889999999885
No 296
>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A
Probab=38.77 E-value=1.1e+02 Score=22.37 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
.+++..|......+++.+|+..++.|...++.+.+.-
T Consensus 276 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~ 312 (380)
T 3c3r_A 276 NAEYHQSILAKQQKKFGEEIARLQHAAELIKTVASRY 312 (380)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566778888888899999999888888888877654
No 297
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=35.16 E-value=71 Score=18.94 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC--cHHHH-HHHHHHHHH
Q 033182 38 TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS--NNQAK-RTILRLQPL 93 (125)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~--~~~~~-~~l~~~~~~ 93 (125)
..++....-|.-+.+.++|.+|... |+.+..+..+ -..+. +.++.|.+.
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l-------~~k~~n~ten~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVF-------FEKALNLSDNEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHH-------HHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 4566777788889999999999999 8888765322 22233 556666543
No 298
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=33.97 E-value=1.3e+02 Score=22.80 Aligned_cols=48 Identities=27% Similarity=0.238 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 22 FEESIKECTKALELNP-----------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
|+..+.+++.|+..=| +..-++..+|.+|+-.++|++|... .+.++..
T Consensus 174 y~~I~~DL~~A~~~Lp~~~~~~~~gr~tk~aA~allArvyL~~~~~~~A~~~-------a~~vi~~ 232 (495)
T 3lew_A 174 YAQSINDLEEALELIPETYVRDAKHKIDNEVVLGILSRACLYARQWEKAKTY-------SDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCSSTTSCCHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCcccCCcccHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHhc
Confidence 4456666777765433 2345788899999999999999999 7776653
No 299
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=33.79 E-value=75 Score=20.73 Aligned_cols=34 Identities=6% Similarity=-0.016 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT 38 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 38 (125)
.+.++..+|.+|.+.|+..+|.....+|.+.+-.
T Consensus 124 ~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 124 SASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 4788999999999999999999999999876643
No 300
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=33.68 E-value=1.3e+02 Score=22.48 Aligned_cols=41 Identities=17% Similarity=0.158 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHchhHHHHHHh
Q 033182 22 FEESIKECTKALELNP--------TYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p--------~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
|+..+.+++.|+..=| +..-++..+|.+++-.|+|++|...
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allArvyL~~~~~~~A~~~ 218 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVNRWAAMTLLSRVYLYKGEYNEALTM 218 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCCHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeeeHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3556777777776543 3356788899999999999999998
No 301
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=33.55 E-value=1.1e+02 Score=20.67 Aligned_cols=46 Identities=15% Similarity=0.033 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHH--hcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHH
Q 033182 22 FEESIKECTKAL--ELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLM 67 (125)
Q Consensus 22 ~~~A~~~~~~al--~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 67 (125)
...+...|.... .++-..+..|-..|..+...|++.+|...|+.+.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI 142 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGA 142 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444454433 3345556666666666666666666666555543
No 302
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=33.28 E-value=1.2e+02 Score=20.88 Aligned_cols=31 Identities=16% Similarity=-0.090 Sum_probs=15.9
Q ss_pred CCCChHHHHHHHHHHHHchhHHHHHHhHHHH
Q 033182 36 NPTYMKALIRRAEAHEKLEHFEEAIAGIQDL 66 (125)
Q Consensus 36 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 66 (125)
+-..+..|-..|..+...|+|.+|...|+.+
T Consensus 146 G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G 176 (223)
T 4aez_C 146 GQESSIFYEEYANYFESRGLFQKADEVYQKG 176 (223)
T ss_dssp STTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555555544444
No 303
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=33.27 E-value=1.5e+02 Score=22.23 Aligned_cols=48 Identities=13% Similarity=0.218 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHhcCC--------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 22 FEESIKECTKALELNP--------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
|+..+.+++.|+..=| +..-++..+|.+|+-.++|++|... .+.++..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~-------a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETSNGYINYWAAQALLSRVYLNMGEYQKAYDA-------ATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccccCCcCcHHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHhC
Confidence 4567778888877644 2356788899999999999999999 7766653
No 304
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.41 E-value=1.6e+02 Score=22.02 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCC----hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALE---LNPTY----MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---l~p~~----~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
.+..++......+...++|..|...+.++-. -.+.. ...+.-.|..+...++|.+|..+ |..++.
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~-------y~e~~~ 246 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY-------LQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHh
Confidence 3456777778888888999999888887632 12222 34566678888899999999988 666554
No 305
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.27 E-value=1.2e+02 Score=20.78 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT 38 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 38 (125)
.+-+|...|..+...|+|.+|...|...+.....
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3456666677777777777777777777666543
No 306
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.68 E-value=1.7e+02 Score=21.74 Aligned_cols=59 Identities=10% Similarity=-0.015 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh----cCC--CChHHHHHHHHHHHHchhHHHHHHh
Q 033182 4 LRSICHSNRGICFLKLGKFEESIKECTKALE----LNP--TYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~----l~p--~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.++.+...++..|...|++.+|......... .++ ...+.+..-...+...++|..|...
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~ 199 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVL 199 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 3566778899999999999999998887653 222 2367888889999999999999988
No 307
>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}
Probab=29.34 E-value=1.7e+02 Score=21.38 Aligned_cols=39 Identities=15% Similarity=0.225 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCC
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDP 78 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p 78 (125)
+.+++..|......+++.+|+..++.|...++.+.+...
T Consensus 252 A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~k 290 (363)
T 3rau_A 252 AVAHLHMGKQAEEQQKFGERVAYFQSALDKLNEAIKLAK 290 (363)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456777788888889999999999999999998888653
No 308
>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A
Probab=28.81 E-value=1.2e+02 Score=22.30 Aligned_cols=37 Identities=19% Similarity=0.110 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
+.+++..|..+...+++.+|+..++.|...++.+.+.
T Consensus 253 A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~ 289 (376)
T 3r9m_A 253 AYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEAL 289 (376)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888999999999988888888877654
No 309
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=28.31 E-value=12 Score=28.07 Aligned_cols=30 Identities=17% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 48 EAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 48 ~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
.-.-..|+|++|+..|+.++.+|..+++..
T Consensus 19 v~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e 48 (444)
T 2zan_A 19 AQEDKAGNYEEALQLYQHAVQYFLHVVKYE 48 (444)
T ss_dssp ------------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 333455778888888777777788887765
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=27.24 E-value=1.3e+02 Score=19.34 Aligned_cols=48 Identities=10% Similarity=-0.032 Sum_probs=37.4
Q ss_pred HHHHHHHHH--hcCCCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCC
Q 033182 25 SIKECTKAL--ELNPTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPS 79 (125)
Q Consensus 25 A~~~~~~al--~l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~ 79 (125)
+...|.... .++-..+..|-.-|..+...|++.+|... |+..++.+..
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V-------y~~Gi~~~A~ 133 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAV-------LQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHHTTCB
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH-------HHHHHHcCCc
Confidence 444455444 33467788999999999999999999999 9999987544
No 311
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=27.11 E-value=1.5e+02 Score=20.06 Aligned_cols=34 Identities=15% Similarity=-0.115 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 033182 5 RSICHSNRGICFLKLGKFEESIKECTKALELNPT 38 (125)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~l~p~ 38 (125)
.+.+|...|..+...|+|.+|...|...++.+..
T Consensus 114 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~ 147 (202)
T 3esl_A 114 LSLFYEEFSKLLENAQFFLEAKVLLELGAENNCR 147 (202)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 3556777777777778888887777777776643
No 312
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=27.02 E-value=1.5e+02 Score=22.27 Aligned_cols=30 Identities=13% Similarity=-0.156 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 39 YMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
..-++..+|.+++-+++|++|... .+.++.
T Consensus 190 k~aA~aLlARvyL~~~~~~~A~~~-------a~~vi~ 219 (460)
T 3snx_A 190 TDVVNGLMARAYLLTGQWGEAAKA-------AEAARK 219 (460)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHH-------HHHHTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHH-------HHHHHh
Confidence 345788899999999999999999 877775
No 313
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=25.05 E-value=1.1e+02 Score=21.26 Aligned_cols=49 Identities=20% Similarity=0.136 Sum_probs=37.4
Q ss_pred HHHHHhcCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHchhHHHHHHh
Q 033182 14 ICFLKLGKFEESIKECTKALELNPTYMKALIRRAEAHEKLEHFEEAIAG 62 (125)
Q Consensus 14 ~~~~~~~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~~~A~~~ 62 (125)
.+.++.|.|++|.+.+++.+.-+|.+-+...-+..+-.+...+..-++.
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~~~s~~kLr~kL~~II~~Kd~~H~~lqn 170 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSKDPTTQKLRNDLLNIIREKNLAHPVIQN 170 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTTCGGGHHHHHHHHHHHHHTCTTSHHHHT
T ss_pred HHHHHhcchHHHHHHHHHHhcCCCCchHHHHHHHHHHhccCcccHHHHh
Confidence 3456789999999999999998888877777777776666665555543
No 314
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=24.66 E-value=1e+02 Score=17.44 Aligned_cols=34 Identities=21% Similarity=0.198 Sum_probs=22.9
Q ss_pred HHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhh
Q 033182 43 LIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEF 76 (125)
Q Consensus 43 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l 76 (125)
...+|.=+--.|+|+.|+.+|+-++.-..+.+.-
T Consensus 15 ~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~ 48 (78)
T 2rpa_A 15 NVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYS 48 (78)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHh
Confidence 3456666777888888888866666655555554
No 315
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.32A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.8.11.1
Probab=23.09 E-value=1.2e+02 Score=17.59 Aligned_cols=30 Identities=3% Similarity=-0.199 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 70 (125)
+.|+.-|.-+.+.|++..|...+.++-=++
T Consensus 40 ~~Y~~Da~~fl~kGD~v~Ala~isYa~GwL 69 (87)
T 2pmr_A 40 LNYRDDSVYYLEKGDHITSFGCITYAHGLL 69 (87)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 566777777777777777777666554443
No 316
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein struct initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=22.49 E-value=1.2e+02 Score=17.52 Aligned_cols=30 Identities=10% Similarity=-0.023 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHH
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVM 70 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 70 (125)
+.|+.-|..+...|++..|...+.++-=++
T Consensus 36 ~~Y~~Da~~fl~kGD~v~Ala~isYa~GwL 65 (86)
T 2oo2_A 36 EAYISDSRYFLEKGDLVRAFECVVWAWAWL 65 (86)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345555555555555555555544444433
No 317
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=21.73 E-value=3.1e+02 Score=21.95 Aligned_cols=37 Identities=19% Similarity=0.134 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhC
Q 033182 41 KALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFD 77 (125)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~ 77 (125)
.+++..|......+++.+|+..++.|...+..+...-
T Consensus 261 ~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~~~~ 297 (704)
T 2xs1_A 261 NAEYHQSILAKQQYYFGEEIARLQHAAELIKTVASRY 297 (704)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777788899999999888888887777643
No 318
>3otn_A SUSD superfamily protein; putative outer membrane protein, carbohydrate binding, structural genomics; HET: MSE; 1.95A {Parabacteroides distasonis}
Probab=21.67 E-value=2.1e+02 Score=21.49 Aligned_cols=47 Identities=9% Similarity=0.038 Sum_probs=35.2
Q ss_pred HH-HHHHHHHHHHhc-CC--------CChHHHHHHHHHHHHch---------hHHHHHHhHHHHHHHHHHHHh
Q 033182 22 FE-ESIKECTKALEL-NP--------TYMKALIRRAEAHEKLE---------HFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 22 ~~-~A~~~~~~al~l-~p--------~~~~~~~~~~~~~~~~~---------~~~~A~~~~~~~~~~~~~a~~ 75 (125)
|+ ..+.+++.|+.. -| +..-++..+|.+++-.+ +|++|.+. .+.++.
T Consensus 160 y~~~I~~DL~~A~~~~Lp~~~~~gr~tk~aA~allarvyL~~~~~~~~~~~~~~~~A~~~-------a~~vi~ 225 (482)
T 3otn_A 160 YDEIIIPDLLEAEQSDLAFSDHTGRVSMGAVKALLADVYLTYAGYPLQGGKSYYAESAKR-------SLEVIK 225 (482)
T ss_dssp HHHTHHHHHHHHHTSCCCSCCSSSCCCHHHHHHHHHHHHHHHHSTTTCCCHHHHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCcCCcCcHHHHHHHHHHHHHHhCCCcccCcHHHHHHHHHH-------HHHHHc
Confidence 45 566778888876 23 33567888999999888 89999998 777765
No 319
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=21.59 E-value=1.4e+02 Score=17.97 Aligned_cols=47 Identities=13% Similarity=0.097 Sum_probs=34.2
Q ss_pred HHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHH
Q 033182 51 EKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPLAEEK 97 (125)
Q Consensus 51 ~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~~~~~ 97 (125)
...|.|....+.+.+...+|..|...|+.+..++..-..+.....+.
T Consensus 65 l~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s~~~~~A~~L~~~f~~~ 111 (126)
T 3mqm_A 65 ILTGYYKTVEAFDADMLKVFRNAEKYYGRKSPVGRDVCRLRKAYYNA 111 (126)
T ss_dssp HHHTCCCSHHHHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence 34567877777888888899999999987766666655555555443
No 320
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=21.20 E-value=2.5e+02 Score=21.26 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhcCC-----------CChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 22 FEESIKECTKALELNP-----------TYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 22 ~~~A~~~~~~al~l~p-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
|+..+.+++.|+..=| +..-++..+|.+++-.++|++|... .+.++.
T Consensus 153 ~~~I~~dL~~A~~~Lp~~~~~~~~gr~tk~aA~allarv~L~~~~~~~A~~~-------a~~vi~ 210 (517)
T 3qnk_A 153 YDFILEDLKKATEMLPASYGSREKGRATKGAAYALKSRVELYDKRYEDVIKS-------CAEVYK 210 (517)
T ss_dssp HHHHHHHHHHHHHHSCSCCCSTTTTSCCHHHHHHHHHHHHHHTTCHHHHHHH-------HHHHHT
T ss_pred HHHHHHHHHHHHHhCccccCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 4456677777765433 2345788899999999999999999 777775
No 321
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=20.54 E-value=2.8e+02 Score=20.98 Aligned_cols=68 Identities=10% Similarity=0.055 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcC-----CCChHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q 033182 25 SIKECTKALELN-----PTYMKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILEFDPSNNQAKRTILRLQPL 93 (125)
Q Consensus 25 A~~~~~~al~l~-----p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~l~p~~~~~~~~l~~~~~~ 93 (125)
++..|.+++... -...-.|.-+|..+++.+++.+|+...-.+-.|. +-.....++.+++...-++...
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi-~~YNY~reDeEIYKEf~eIAne 348 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYVA-GKYNYSKDDEEMYKEFHEIAND 348 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCCCGGGHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHHH-HHcCCCccHHHHHHHHHHHHHH
Confidence 566666666543 3456677788889999999999999833333332 1112234567777777666543
No 322
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=20.26 E-value=1.3e+02 Score=17.96 Aligned_cols=28 Identities=11% Similarity=0.000 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHHHHHHchhHHHHHHhH
Q 033182 36 NPTYMKALIRRAEAHEKLEHFEEAIAGI 63 (125)
Q Consensus 36 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~ 63 (125)
...+++..+.-|.-..+.|+|++|...+
T Consensus 16 ~aG~ArS~~~eAl~~Ak~g~fe~A~~~l 43 (105)
T 2e2a_A 16 YAGDARSKLLEALKAAENGDFAKADSLV 43 (105)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4466777777888888888888888873
No 323
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=20.24 E-value=2.8e+02 Score=20.73 Aligned_cols=29 Identities=17% Similarity=0.056 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHchhHHHHHHhHHHHHHHHHHHHh
Q 033182 40 MKALIRRAEAHEKLEHFEEAIAGIQDLMIVMKKILE 75 (125)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~a~~ 75 (125)
.-++..+|.+++-.|+|++|... .+.++.
T Consensus 197 ~aA~allarvyL~~~~~~~A~~~-------a~~vi~ 225 (478)
T 3hdx_A 197 LSAYSVLAHICAWQGNYAEAETY-------SAFIID 225 (478)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHH-------HHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHH-------HHHHHh
Confidence 34778899999999999999999 666664
No 324
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=20.06 E-value=1.4e+02 Score=17.85 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=20.2
Q ss_pred CCChHHHHHHHHHHHHchhHHHHHHhHHH
Q 033182 37 PTYMKALIRRAEAHEKLEHFEEAIAGIQD 65 (125)
Q Consensus 37 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 65 (125)
..+++..+.-+.-..+.|+|++|...++.
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~e 43 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQ 43 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35566777777777788888888777333
Done!