BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033184
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PKQ|O Chain O, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|Q Chain Q, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
pdb|2PKQ|T Chain T, Crystal Structure Of The Photosynthetic
A2b2-Glyceraldehyde-3- Phosphate Dehydrogenase,
Complexed With Nadp
Length = 368
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 3 SSIPAYG---NGKEAGNEAGYIVGMSTCYPK--PGFLRITDKETLIVESNYSSSHDHTGV 57
S IP Y N K+ G++ I+ ++C F+++ D+E IV+ +++H +TG
Sbjct: 128 SDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTTTHSYTGD 187
Query: 58 MGLF 61
L
Sbjct: 188 QRLL 191
>pdb|4HDA|A Chain A, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
pdb|4HDA|B Chain B, Crystal Structure Of Human Sirt5 In Complex With
Fluor-de-lys Peptide And Resveratrol
Length = 275
Score = 29.6 bits (65), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 72 SSSFLDVFNKMYNDINHSAFVWGAFVLA--GVAITAAAVGYWRRNKYEDGYQPI 123
SSS D F K + H + GA V A GV A GYWR+ + +D P+
Sbjct: 10 SSSMAD-FRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPL 62
>pdb|4G1C|A Chain A, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
pdb|4G1C|B Chain B, Human Sirt5 Bound To Succ-Idh2 And Carba-Nad
Length = 267
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 72 SSSFLDVFNKMYNDINHSAFVWGAFVLA--GVAITAAAVGYWRRNKYEDGYQPI 123
SSS D F K + H + GA V A GV A GYWR+ + +D P+
Sbjct: 2 SSSMAD-FRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPL 54
>pdb|2NYR|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
pdb|2NYR|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5 In Complex
With Suramin
Length = 271
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 72 SSSFLDVFNKMYNDINHSAFVWGAFVLA--GVAITAAAVGYWRRNKYEDGYQPI 123
SSS D F K + H + GA V A GV A GYWR+ + +D P+
Sbjct: 6 SSSMAD-FRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPL 58
>pdb|3RIG|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIG|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|A Chain A, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|3RIY|B Chain B, Sirt5 Is An Nad-Dependent Protein Lysine Demalonylase And
Desuccinylase
pdb|4F4U|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F4U|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|A Chain A, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
pdb|4F56|B Chain B, The Bicyclic Intermediate Structure Provides Insights Into
The Desuccinylation Mechanism Of Sirt5
Length = 273
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 72 SSSFLDVFNKMYNDINHSAFVWGAFVLA--GVAITAAAVGYWRRNKYEDGYQPI 123
SSS D F K + H + GA V A GV A GYWR+ + +D P+
Sbjct: 8 SSSMAD-FRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPL 60
>pdb|2B4Y|A Chain A, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|B Chain B, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|C Chain C, Crystal Structure Of Human Sirtuin Homolog 5
pdb|2B4Y|D Chain D, Crystal Structure Of Human Sirtuin Homolog 5
Length = 271
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 72 SSSFLDVFNKMYNDINHSAFVWGAFVLA--GVAITAAAVGYWRRNKYEDGYQPI 123
SSS D F K + H + GA V A GV A GYWR+ + +D P+
Sbjct: 6 SSSXAD-FRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPL 58
>pdb|3NKH|A Chain A, Crystal Structure Of Integrase From Mrsa Strain
Staphylococcus Aureus
pdb|3NKH|B Chain B, Crystal Structure Of Integrase From Mrsa Strain
Staphylococcus Aureus
Length = 244
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 18 AGYIVGMSTCY-PKPGFLRITDKETLIVESNYSSSHDHTGVMGLFYILVA 66
+G +G Y +L + + E++I + N + H+G+ FY+ VA
Sbjct: 9 SGVDLGTENLYFQSNAYLELNEIESIIKDINTKAQKXHSGIHKRFYLFVA 58
>pdb|3BXO|A Chain A, Crystal Structure Of Streptomyces Venezuelae Desvi
pdb|3BXO|B Chain B, Crystal Structure Of Streptomyces Venezuelae Desvi
Length = 239
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 15/41 (36%)
Query: 53 DHTGVMGLFYI---------------LVADRVPESSSFLDV 78
DH V LFY+ LV R PE+SS LDV
Sbjct: 7 DHADVYDLFYLGRGKDYAAEASDIADLVRSRTPEASSLLDV 47
>pdb|2HFN|A Chain A, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFN|B Chain B, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFN|C Chain C, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFN|D Chain D, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFN|E Chain E, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFN|F Chain F, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFN|G Chain G, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFN|H Chain H, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFN|I Chain I, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFN|J Chain J, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFO|A Chain A, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFO|B Chain B, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFO|C Chain C, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFO|D Chain D, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFO|E Chain E, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFO|F Chain F, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFO|G Chain G, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFO|H Chain H, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFO|I Chain I, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
pdb|2HFO|J Chain J, Crystal Structures Of The Synechocystis Photoreceptor
Slr1694 Reveal Distinct Structural States Related To
Signaling
Length = 153
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 13 EAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNY 48
+ N A I G+ CY KP FL++ + E V Y
Sbjct: 32 QRNNPANGITGL-LCYSKPAFLQVLEGECEQVNETY 66
>pdb|3MZI|A Chain A, Crystallographic Structure Of The Pseudo-Signaling State
Of The Bluf Photoreceptor Pixd (Slr1694) Y8f Mutant
pdb|3MZI|B Chain B, Crystallographic Structure Of The Pseudo-Signaling State
Of The Bluf Photoreceptor Pixd (Slr1694) Y8f Mutant
pdb|3MZI|C Chain C, Crystallographic Structure Of The Pseudo-Signaling State
Of The Bluf Photoreceptor Pixd (Slr1694) Y8f Mutant
pdb|3MZI|D Chain D, Crystallographic Structure Of The Pseudo-Signaling State
Of The Bluf Photoreceptor Pixd (Slr1694) Y8f Mutant
pdb|3MZI|E Chain E, Crystallographic Structure Of The Pseudo-Signaling State
Of The Bluf Photoreceptor Pixd (Slr1694) Y8f Mutant
pdb|3MZI|F Chain F, Crystallographic Structure Of The Pseudo-Signaling State
Of The Bluf Photoreceptor Pixd (Slr1694) Y8f Mutant
Length = 150
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 13 EAGNEAGYIVGMSTCYPKPGFLRITDKETLIVESNY 48
+ N A I G+ CY KP FL++ + E V Y
Sbjct: 29 QRNNPANGITGL-LCYSKPAFLQVLEGECEQVNETY 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,040,051
Number of Sequences: 62578
Number of extensions: 147502
Number of successful extensions: 308
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 17
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)