BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033184
         (125 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens
           GN=APMAP PE=1 SV=2
          Length = 416

 Score = 31.2 bits (69), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 4   SIPAYGNGKEAGNEAGYIVGMSTCYPKPGF 33
           ++P + +     +  GY VGMST  P PGF
Sbjct: 300 NMPGFPDNIRPSSSGGYWVGMSTIRPNPGF 329


>sp|Q5R6G3|SIR5_PONAB NAD-dependent protein deacylase sirtuin-5, mitochondrial OS=Pongo
           abelii GN=SIRT5 PE=2 SV=1
          Length = 310

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 72  SSSFLDVFNKMYNDINHSAFVWGAFVLA--GVAITAAAVGYWRRNKYEDGYQPI 123
           SSS  D F K++    H   + GA V A  GV     A GYWR+ + +D   P+
Sbjct: 37  SSSMAD-FRKLFAKAKHIVIMSGAGVSAESGVPTFRGAGGYWRKWQAQDLATPL 89


>sp|Q8K2C6|SIR5_MOUSE NAD-dependent protein deacylase sirtuin-5, mitochondrial OS=Mus
           musculus GN=Sirt5 PE=1 SV=1
          Length = 310

 Score = 30.0 bits (66), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 73  SSFLDVFNKMYNDINHSAFVWGAFVLA--GVAITAAAVGYWRRNKYEDGYQP 122
           SS +  F K + +  H A + GA V A  GV     A GYWR+ + +D   P
Sbjct: 37  SSNMADFRKCFANAKHIAIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATP 88


>sp|Q9NXA8|SIR5_HUMAN NAD-dependent protein deacylase sirtuin-5, mitochondrial OS=Homo
           sapiens GN=SIRT5 PE=1 SV=2
          Length = 310

 Score = 30.0 bits (66), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 72  SSSFLDVFNKMYNDINHSAFVWGAFVLA--GVAITAAAVGYWRRNKYEDGYQPI 123
           SSS  D F K +    H   + GA V A  GV     A GYWR+ + +D   P+
Sbjct: 37  SSSMAD-FRKFFAKAKHIVIISGAGVSAESGVPTFRGAGGYWRKWQAQDLATPL 89


>sp|P12860|G3PB_SPIOL Glyceraldehyde-3-phosphate dehydrogenase B, chloroplastic
           OS=Spinacia oleracea GN=GAPB PE=1 SV=1
          Length = 451

 Score = 29.6 bits (65), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 3   SSIPAYG---NGKEAGNEAGYIVGMSTCYPK--PGFLRITDKETLIVESNYSSSHDHTGV 57
           S IP Y    N K+ G++   I+  ++C       F+++ D+E  IV+   +++H +TG 
Sbjct: 211 SDIPTYVVGVNEKDYGHDVANIISNASCTTNCLAPFVKVLDEELGIVKGTMTTTHSYTGD 270

Query: 58  MGLF 61
             L 
Sbjct: 271 QRLL 274


>sp|Q9KVQ7|RMUC_VIBCH DNA recombination protein RmuC homolog OS=Vibrio cholerae serotype
           O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=rmuC
           PE=3 SV=1
          Length = 513

 Score = 29.6 bits (65), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 78  VFNKMYNDINHSAFVWGAFVLAGVAITAAAVGYWRRNKYE 117
           +FN  +   N SA +W A V AG   T  A+G+W + +Y+
Sbjct: 1   MFNMQWIFENQSA-LWSALVSAGA--TGVAIGWWVKQRYQ 37


>sp|P34492|YMQ1_CAEEL Putative NipSnap protein K02D10.1 OS=Caenorhabditis elegans
           GN=K02D10.1 PE=2 SV=4
          Length = 526

 Score = 28.9 bits (63), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 68  RVPESSSFLDVFNKMYNDINH---SAFVWGAFVLAGVAITAAAVGYWRRNK-YED 118
           R  E  ++LD F K  N++N    S  + G++  A       A+  WR NK YED
Sbjct: 322 RPGEQDAYLDAFGKYKNEMNQKNPSIELVGSWTCAYGRTRDQAIHLWRHNKGYED 376


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.137    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,035,914
Number of Sequences: 539616
Number of extensions: 1816398
Number of successful extensions: 3383
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3381
Number of HSP's gapped (non-prelim): 9
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)