Query 033186
Match_columns 125
No_of_seqs 68 out of 70
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 17:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033186.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033186hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kdf_A Replication protein A 1 99.0 3.4E-09 1.1E-13 76.6 10.4 84 26-115 21-109 (121)
2 4gop_A Putative uncharacterize 99.0 6.2E-09 2.1E-13 74.4 11.1 87 26-116 17-107 (114)
3 2pi2_E Replication protein A 1 99.0 6E-09 2.1E-13 77.3 10.7 86 26-117 42-132 (142)
4 3kf6_B Protein TEN1; OB fold, 98.9 9.9E-08 3.4E-12 67.9 14.9 99 5-113 3-102 (105)
5 3kf8_B Protein TEN1; OB fold; 93.6 0.49 1.7E-05 34.2 8.4 84 15-104 12-106 (123)
6 3lcn_C MRNA transport factor G 81.7 1.2 4E-05 24.6 2.5 21 102-122 8-28 (29)
7 3bju_A Lysyl-tRNA synthetase; 75.5 28 0.00094 29.8 10.5 72 26-97 54-138 (521)
8 4he6_A Peptidase family U32; u 70.9 11 0.00039 24.3 5.6 46 33-78 9-59 (89)
9 4gop_B Putative uncharacterize 63.4 9.7 0.00033 26.4 4.3 22 21-42 82-103 (136)
10 1sr3_A APO-CCME; OB fold, beta 62.9 40 0.0014 24.3 8.5 71 11-81 8-88 (136)
11 2xgt_A Asparaginyl-tRNA synthe 61.0 70 0.0024 26.5 10.6 71 26-96 10-93 (435)
12 4ex5_A Lysine--tRNA ligase; st 58.0 54 0.0019 28.3 8.8 70 27-96 86-165 (529)
13 3m4p_A Ehasnrs, asparaginyl-tR 57.9 83 0.0029 26.4 12.0 84 9-97 17-119 (456)
14 3a74_A Lysyl-tRNA synthetase; 57.1 63 0.0022 27.4 9.0 71 27-97 56-136 (493)
15 1e1o_A Lysyl-tRNA synthetase, 54.7 1E+02 0.0034 26.3 11.2 71 27-97 64-145 (504)
16 1j6q_A Cytochrome C maturation 54.2 57 0.002 23.4 8.7 71 11-81 12-93 (136)
17 3nem_A Aspartyl-tRNA synthetas 51.3 1.1E+02 0.0036 25.6 11.4 71 26-96 15-97 (438)
18 1x54_A Asparaginyl-tRNA synthe 48.0 1.2E+02 0.004 25.2 9.3 72 26-97 15-98 (434)
19 3p8b_B Transcription antitermi 48.0 52 0.0018 23.0 6.1 44 22-65 90-145 (152)
20 1n9w_A Aspartyl-tRNA synthetas 46.8 1.2E+02 0.0042 25.0 11.2 68 25-97 11-85 (422)
21 3kf6_A Protein STN1; OB fold, 44.1 89 0.003 22.6 12.8 86 28-114 48-145 (159)
22 2pi2_A Replication protein A 3 42.7 29 0.00098 26.9 4.3 26 22-47 118-143 (270)
23 1nz9_A Transcription antitermi 41.4 54 0.0018 19.3 5.0 31 33-63 22-56 (58)
24 1eov_A ASPRS, aspartyl-tRNA sy 41.2 1.6E+02 0.0055 24.8 9.2 72 26-97 35-127 (487)
25 4dka_C RNA-editing complex pro 38.0 23 0.00077 24.8 2.7 24 22-45 59-85 (105)
26 3d3r_A Hydrogenase assembly ch 35.8 1.1E+02 0.0036 21.1 6.5 72 29-117 23-94 (103)
27 1wyd_A Hypothetical aspartyl-t 33.5 2E+02 0.007 23.7 10.8 69 26-95 15-93 (429)
28 4gop_B Putative uncharacterize 31.7 1.2E+02 0.0042 20.6 10.2 74 28-102 37-119 (136)
29 3kf6_A Protein STN1; OB fold, 31.4 44 0.0015 24.3 3.5 22 24-45 97-118 (159)
30 1o7i_A SSB, SSO2364, single st 30.1 66 0.0023 21.5 4.1 42 12-58 53-96 (119)
31 3be3_A Uncharacterized protein 29.9 49 0.0017 22.4 3.3 22 67-89 16-37 (91)
32 1c0a_A Aspartyl tRNA synthetas 29.9 2.7E+02 0.0092 24.0 10.0 72 26-97 14-102 (585)
33 3dm3_A Replication factor A; p 29.4 1.3E+02 0.0043 20.0 9.8 76 9-91 3-91 (105)
34 1l0w_A Aspartyl-tRNA synthetas 29.2 2.8E+02 0.0095 23.9 9.5 71 26-97 15-100 (580)
35 4gs3_A Single-stranded DNA-bin 29.1 76 0.0026 21.7 4.2 28 12-40 54-82 (107)
36 2pi2_A Replication protein A 3 29.0 1.9E+02 0.0066 22.0 8.7 93 10-103 47-155 (270)
37 3i2z_B RNA chaperone, negative 26.7 1.2E+02 0.004 18.8 6.4 48 31-78 5-57 (71)
38 4ah6_A Aspartate--tRNA ligase, 26.2 3.3E+02 0.011 23.9 8.9 71 26-97 23-110 (617)
39 2bh8_A 1B11; transcription, mo 25.8 1.4E+02 0.0049 19.5 6.2 46 31-76 16-68 (101)
40 2ckk_A KIN17; beta barrel, rib 24.4 1.6E+02 0.0055 20.4 5.3 33 44-76 46-80 (127)
41 4hhu_A OR280; engineered prote 22.0 45 0.0015 24.3 2.0 37 66-112 68-104 (170)
42 1qd7_I S17 ribosomal protein; 20.8 1.1E+02 0.0038 20.4 3.7 30 3-36 47-76 (89)
No 1
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=99.00 E-value=3.4e-09 Score=76.59 Aligned_cols=84 Identities=19% Similarity=0.365 Sum_probs=66.3
Q ss_pred CCCeEEEEEEeEeecccccEEEEEeC-CeEEEEecccccccccccCCEEEEEEEEeeecCCceeEEEEEEEec-cC---C
Q 033186 26 EGASLRVTGKLQDYAVEAAMAIIADG-NAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV-DG---L 100 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~~~a~l~~~-g~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~V-Dg---l 100 (125)
.|+.||++||+.+.++..+.|++.++ |..++|... +|+...++.+||+||.+.. + ..++|-.+..- |+ +
T Consensus 21 vgk~VrivGkV~~~~~~g~~~~l~s~Dg~~Vtv~l~--~p~~~~l~~~vEViG~V~~--~--~tI~~~~~~~fg~~~~~f 94 (121)
T 3kdf_A 21 IDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELM--EPLDEEISGIVEVVGRVTA--K--ATILCTSYVQFKEDSHPF 94 (121)
T ss_dssp TTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECS--SCCSSCCCSEEEEEEEECT--T--SCEEEEEEEECCCSSSCC
T ss_pred CCCeEEEEEEEEEEcCCCCEEEEEeCCCCEEEEEeC--CCCCcccCcEEEEEEEECC--C--CeEEEEEEEecCCCCccc
Confidence 59999999999999999999999995 337887765 4555666889999999973 2 23444443333 78 9
Q ss_pred CHHHHHHHHHHHHHH
Q 033186 101 DLNLYRQSLQLLRQF 115 (125)
Q Consensus 101 Dl~L~ekal~~~R~f 115 (125)
|+++|.++++.-.+|
T Consensus 95 D~~~yn~lv~l~~~~ 109 (121)
T 3kdf_A 95 DLGLYNEAVKIIHDF 109 (121)
T ss_dssp CHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999998874
No 2
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=98.98 E-value=6.2e-09 Score=74.37 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=66.0
Q ss_pred CCCeEEEEEEeEeecccccEEEEEeC-CeEEEEecccccccccccCCEEEEEEEEeeecCCceeEEEEEEEec---cCCC
Q 033186 26 EGASLRVTGKLQDYAVEAAMAIIADG-NAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV---DGLD 101 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~~~a~l~~~-g~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~V---DglD 101 (125)
.|+.||++||+.+.+. +.+++.+. +..|+|... +|..+.++++|||||.+.-..++---+..|+..++ |++|
T Consensus 17 ~g~~VrivGkV~~~~g--~~~~l~s~d~~~Vtv~l~--~~~~~~~~~~vEViG~V~~~~~~~~~~~I~~~~~~~~g~~~D 92 (114)
T 4gop_A 17 VGQTVRIVGKVHKVTG--NTLLMQTSDLGNVEIAMT--PDSDVSSSTFVEVTGKVSDAGSSFQANQIREFTTVDCGHDVD 92 (114)
T ss_dssp TTSEEEEEEEEEEEET--TEEEEECTTSCEEEEECC--SSCCGGGCSEEEEEEEECTTSSEEEEEEEEECSCCC----CC
T ss_pred CCCeEEEEEEEeeeCC--CEEEEEeCCCCEEEEEeC--CCCCcccCcEEEEEEEEcCCCCcccCCeEEEEEEEeCCCccC
Confidence 5899999999999996 89999974 337776654 56778899999999999732111113566677777 8999
Q ss_pred HHHHHHHHHHHHHHH
Q 033186 102 LNLYRQSLQLLRQFQ 116 (125)
Q Consensus 102 l~L~ekal~~~R~f~ 116 (125)
+++|.+++++-.+|-
T Consensus 93 ~~~yn~lv~l~~~f~ 107 (114)
T 4gop_A 93 LTLVENVVQISAAFP 107 (114)
T ss_dssp HHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999999988853
No 3
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=98.96 E-value=6e-09 Score=77.32 Aligned_cols=86 Identities=19% Similarity=0.357 Sum_probs=67.4
Q ss_pred CCCeEEEEEEeEeecccccEEEEEeCC-eEEEEecccccccccccCCEEEEEEEEeeecCCceeEEEEEEEec-cC---C
Q 033186 26 EGASLRVTGKLQDYAVEAAMAIIADGN-AILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV-DG---L 100 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~~~a~l~~~g-~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~V-Dg---l 100 (125)
.|+.||++||+.+.++..+.+++.+.+ ..|+|... +|+...++.+|||||.+.. + ..+++..+..- |. +
T Consensus 42 vGk~VriVGkV~~~~~~G~~~~l~s~Dg~~VtV~l~--~pL~~~~~~~VEViG~V~~--~--~tI~~~~~~~fGd~~~~f 115 (142)
T 2pi2_E 42 IDKPVCFVGRLEKIHPTGKMFILSDGEGKNGTIELM--EPLDEEISGIVEVVGRVTA--K--ATILCTSYVQFKEDSHPF 115 (142)
T ss_dssp TTCEEEEEEEEEEECTTSSEEEEECTTSCEEEEECS--SCCSSCCCSEEEEEEEECT--T--SCEEEEEEEECCCSSSCC
T ss_pred CCCEEEEEEEEeEEcCCCCEEEEEeCCCcEEEEEeC--CCCCccCCCEEEEEEEECC--C--CcEEEEEEEecCCCcccc
Confidence 599999999999999999999999954 37777654 5665677999999999963 2 33444444333 66 9
Q ss_pred CHHHHHHHHHHHHHHHh
Q 033186 101 DLNLYRQSLQLLRQFQA 117 (125)
Q Consensus 101 Dl~L~ekal~~~R~f~~ 117 (125)
|+++|.+++++..+|.+
T Consensus 116 D~~~yn~lv~l~~~f~~ 132 (142)
T 2pi2_E 116 DLGLYNEAVKIIHDFPQ 132 (142)
T ss_dssp CHHHHHHHHHHHHHCGG
T ss_pred CHHHHHHHHHHHHhCcc
Confidence 99999999999887754
No 4
>3kf6_B Protein TEN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} PDB: 3k0x_A
Probab=98.91 E-value=9.9e-08 Score=67.94 Aligned_cols=99 Identities=22% Similarity=0.367 Sum_probs=88.1
Q ss_pred CCCCCeEEEccccccCCcccCCCCeEEEEEEeEeecccccEEEEEeCCeEEEEeccc-ccccccccCCEEEEEEEEeeec
Q 033186 5 AIKSGALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADGNAILKIDTQH-LRDLSFRVGSIYQFIGELHIQA 83 (125)
Q Consensus 5 ~~~~g~~v~l~El~~~~~~~~~g~sVR~~GrL~~yD~~~~~a~l~~~g~~l~Vdt~~-v~~~~~~igs~Yq~IGEl~~~~ 83 (125)
+|.|..+++|.+|. ..+.|.-||-+|-+.+|+ ++.-+|++.+.++.||-++ ++.++.++|.+.-+||.+...
T Consensus 3 GP~ps~L~~Ls~lp----~~~~G~KVRFLGCV~sY~--tg~L~Le~~~~~v~VDV~lvL~~l~~~vGeWvNVvGYir~~- 75 (105)
T 3kf6_B 3 GSDSAKLIFINQIN----DCKDGQKLRFLGCVQSYK--NGILRLIDGSSSVTCDVTVVLPDVSIQKHEWLNIVGRKRQD- 75 (105)
T ss_dssp CSSCCEECCGGGGG----GSCTTCEEEEEEEEEEEE--TTEEEEEETTEEEEEECTTSCCSSCCCTTCEEEEEEEEEET-
T ss_pred CCCcceEeehhhcc----CCCCCCEEEEEEEeeeec--cEEEEEccCCcEEEEEHHHhhchheeecccEEEEEEEEecC-
Confidence 58899999999974 366799999999999999 9999999877799999998 677899999999999999873
Q ss_pred CCceeEEEEEEEeccCCCHHHHHHHHHHHH
Q 033186 84 DCEAILQARVGRNVDGLDLNLYRQSLQLLR 113 (125)
Q Consensus 84 d~~~~lkARV~r~VDglDl~L~ekal~~~R 113 (125)
..++|=..--.=+||+..||+++..|.
T Consensus 76 ---v~VqAl~lwsAG~idl~~Ye~~l~~r~ 102 (105)
T 3kf6_B 76 ---GIVDVLLIRSAVGINLPRYRQMVSERQ 102 (105)
T ss_dssp ---TEEEEEEEEECTTCCHHHHHHHHHHHH
T ss_pred ---cEEEEEEEeecCCcCHHHHHHHHHHHh
Confidence 788888888889999999999998764
No 5
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=93.61 E-value=0.49 Score=34.24 Aligned_cols=84 Identities=12% Similarity=0.186 Sum_probs=60.3
Q ss_pred cccccCCcccCCCCeEEEEEEeEeecccccEEEEEeC-----C--eEEEEeccc-ccc---cccccCCEEEEEEEEeeec
Q 033186 15 TELHPSSQFYEEGASLRVTGKLQDYAVEAAMAIIADG-----N--AILKIDTQH-LRD---LSFRVGSIYQFIGELHIQA 83 (125)
Q Consensus 15 ~El~~~~~~~~~g~sVR~~GrL~~yD~~~~~a~l~~~-----g--~~l~Vdt~~-v~~---~~~~igs~Yq~IGEl~~~~ 83 (125)
..++|.+. ...-.-||.+|-+.+||.+++.-+|..- + ..+.||-+. ++. -..++|.+.-++|-+..
T Consensus 12 s~~FP~aS-~s~p~kVR~L~QVisYd~~sa~L~l~~~p~~p~ss~~tv~VdI~~vL~~i~~~~~~vG~~VNI~GyynG-- 88 (123)
T 3kf8_B 12 PQEFPEAS-ISNPERLRILAQVKDFIPHESTIVIDKVPTITSEQSTYINICIFNLLEACSSRVLVPGTLVNIDAFYDG-- 88 (123)
T ss_dssp HHHCTTCB-TTBCEEEEEEEEEEEEEGGGTEEEEECCGGGCCSCCCCEEEECTTTTTTSCGGGGSTTCEEEEEEEECS--
T ss_pred hhhCcccc-ccCCceEEEEEEEEEEcCCCcEEEEEecCCCCCCCCeEEEEEHHHHHhhcCccccccceEEEEEEEecC--
Confidence 34455543 2334679999999999999999999973 1 268899888 444 46999999999999865
Q ss_pred CCceeEEEEEEEeccCCCHHH
Q 033186 84 DCEAILQARVGRNVDGLDLNL 104 (125)
Q Consensus 84 d~~~~lkARV~r~VDglDl~L 104 (125)
-.+.|==+--|.|.|+.+
T Consensus 89 ---e~i~~i~i~~vNgs~~t~ 106 (123)
T 3kf8_B 89 ---ESINPVDIYEVNGANFTM 106 (123)
T ss_dssp ---SCEEEEEEEECCGGGCCH
T ss_pred ---ccccEEEEEeecccceeH
Confidence 234444444567766654
No 6
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=81.68 E-value=1.2 Score=24.57 Aligned_cols=21 Identities=10% Similarity=0.297 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q 033186 102 LNLYRQSLQLLRQFQADRMNN 122 (125)
Q Consensus 102 l~L~ekal~~~R~f~~~~~~~ 122 (125)
+.|+.+-|++||+.++++..+
T Consensus 8 m~lLKKKIEEQr~i~~~~~Hk 28 (29)
T 3lcn_C 8 MKLLKKKIEEQREILQKTHHK 28 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhccC
Confidence 578999999999999987654
No 7
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=75.51 E-value=28 Score=29.85 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=52.9
Q ss_pred CCCeEEEEEEeEeecccc---cEEEEEeCCe--EEEEecccc-c--cc-----ccccCCEEEEEEEEeeecCCceeEEEE
Q 033186 26 EGASLRVTGKLQDYAVEA---AMAIIADGNA--ILKIDTQHL-R--DL-----SFRVGSIYQFIGELHIQADCEAILQAR 92 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~---~~a~l~~~g~--~l~Vdt~~v-~--~~-----~~~igs~Yq~IGEl~~~~d~~~~lkAR 92 (125)
.|+.|++-|++.+.=... ..+.|.+++. ++.++...+ . .+ .+.+|+...+-|.+...+.++..++|.
T Consensus 54 ~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~ge~ei~~~ 133 (521)
T 3bju_A 54 TDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLRRGDIIGVQGNPGKTKKGELSIIPY 133 (521)
T ss_dssp SSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGSSCHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEE
T ss_pred CCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCccCCHHHHHHHHhcCCCCCEEEEEEEEEecCCCCEEEEEe
Confidence 588999999999887655 4567777765 666665544 1 12 378999999999998887777777776
Q ss_pred EEEec
Q 033186 93 VGRNV 97 (125)
Q Consensus 93 V~r~V 97 (125)
=++++
T Consensus 134 ~i~~l 138 (521)
T 3bju_A 134 EITLL 138 (521)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 54444
No 8
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=70.89 E-value=11 Score=24.27 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=35.2
Q ss_pred EEEeEeecccccEEEEEe-----CCeEEEEecccccccccccCCEEEEEEE
Q 033186 33 TGKLQDYAVEAAMAIIAD-----GNAILKIDTQHLRDLSFRVGSIYQFIGE 78 (125)
Q Consensus 33 ~GrL~~yD~~~~~a~l~~-----~g~~l~Vdt~~v~~~~~~igs~Yq~IGE 78 (125)
.|.+..||.++++|+|.. -|+.|-+-+...+++.+.+..+|--=|+
T Consensus 9 vG~V~~~~~~~g~~~ie~rN~f~~GD~iEi~~P~g~~~~~~v~~m~d~~G~ 59 (89)
T 4he6_A 9 AGLVLGYDPETGIATVQQRNHFRPGDEVEFFGPEIENFTQVIEKIWDEDGN 59 (89)
T ss_dssp SEEEEEEETTTTEEEEEESSCBCTTCEEEEESTTSCCEEEECCCEEETTSC
T ss_pred EEEEEEEeCCCCEEEEEEcCCcCCCCEEEEEcCCCCcEEEEeHHeEcCCCC
Confidence 588999999999999997 3458877777666777778777653454
No 9
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=63.41 E-value=9.7 Score=26.44 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=18.7
Q ss_pred CcccCCCCeEEEEEEeEeeccc
Q 033186 21 SQFYEEGASLRVTGKLQDYAVE 42 (125)
Q Consensus 21 ~~~~~~g~sVR~~GrL~~yD~~ 42 (125)
...+++|.-||+.|++.+|.-.
T Consensus 82 ~~~~~~g~yVrV~G~v~~f~g~ 103 (136)
T 4gop_B 82 ASEIRNNVYVRVLGTLKSFQNR 103 (136)
T ss_dssp CCSCCTTCEEEEEEEEEEETTE
T ss_pred ccccCCCCEEEEEEEEEEeCCE
Confidence 3578999999999999999643
No 10
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=62.94 E-value=40 Score=24.28 Aligned_cols=71 Identities=21% Similarity=0.208 Sum_probs=50.6
Q ss_pred EEEccccccCCc----ccCCCCeEEEEEEeE----eeccccc--EEEEEeCCeEEEEecccccccccccCCEEEEEEEEe
Q 033186 11 LVNLTELHPSSQ----FYEEGASLRVTGKLQ----DYAVEAA--MAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELH 80 (125)
Q Consensus 11 ~v~l~El~~~~~----~~~~g~sVR~~GrL~----~yD~~~~--~a~l~~~g~~l~Vdt~~v~~~~~~igs~Yq~IGEl~ 80 (125)
++++.|+..... .-+.|+.+|+.|.+. .+|.++. +=.|++++..|.|.-+=+-|-.|+=|.-.-+.|.+.
T Consensus 8 F~tPSEi~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~ 87 (136)
T 1sr3_A 8 FYTPGEILYGKRETQQMPEVGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEGILPDLFREGQGVVVQGELE 87 (136)
T ss_dssp CBCTTTTTSCSTTTSCCCCTTSEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEESCCCTTCCTTSEEEEEEEEC
T ss_pred EeCHHHHhcCcccccccCCCCCEEEEeeEEeCCcEEEcCCCCEEEEEEEeCCcEEEEEECCCCCccccCCCeEEEEEEEC
Confidence 567788765431 156899999999987 2343332 233445666888888887777799999999999986
Q ss_pred e
Q 033186 81 I 81 (125)
Q Consensus 81 ~ 81 (125)
.
T Consensus 88 ~ 88 (136)
T 1sr3_A 88 K 88 (136)
T ss_dssp S
T ss_pred C
Confidence 3
No 11
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=60.97 E-value=70 Score=26.49 Aligned_cols=71 Identities=11% Similarity=0.134 Sum_probs=48.4
Q ss_pred CCCeEEEEEEeEeeccc-c--cEEEEEeCCe--EEEEecccccc---cccccCCEEEEEEEEeeec-----CCceeEEEE
Q 033186 26 EGASLRVTGKLQDYAVE-A--AMAIIADGNA--ILKIDTQHLRD---LSFRVGSIYQFIGELHIQA-----DCEAILQAR 92 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~-~--~~a~l~~~g~--~l~Vdt~~v~~---~~~~igs~Yq~IGEl~~~~-----d~~~~lkAR 92 (125)
.|+.|++-|++.+.=.. . ..+.|.+++. ++.++....+. ..+..|+...+-|.+...+ .++..|+|.
T Consensus 10 ~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~g~~El~~~ 89 (435)
T 2xgt_A 10 RNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQTYDALTVNTECTVEIYGAIKEVPEGKEAPNGHELIAD 89 (435)
T ss_dssp TTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGGGGSSHHHHHCCTTCEEEEEEEEEECC------TTEEEEEE
T ss_pred CCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCcchhHHHHhcCCCCCEEEEEEEEEecCCCcCCCCcEEEEEE
Confidence 58999999999998766 3 3566666554 66666433222 2588999999999998743 345667665
Q ss_pred EEEe
Q 033186 93 VGRN 96 (125)
Q Consensus 93 V~r~ 96 (125)
-+.+
T Consensus 90 ~~~v 93 (435)
T 2xgt_A 90 FWKI 93 (435)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 12
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=57.96 E-value=54 Score=28.27 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=49.7
Q ss_pred CCeEEEEEEeEeecccc--cEEEEEeCCe--EEEEecccccc-----c-ccccCCEEEEEEEEeeecCCceeEEEEEEEe
Q 033186 27 GASLRVTGKLQDYAVEA--AMAIIADGNA--ILKIDTQHLRD-----L-SFRVGSIYQFIGELHIQADCEAILQARVGRN 96 (125)
Q Consensus 27 g~sVR~~GrL~~yD~~~--~~a~l~~~g~--~l~Vdt~~v~~-----~-~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~ 96 (125)
|+.|++-|++.+.=... ..+.|.+++. ++.++...+.+ + .+.+|+...+-|.+...+.++..++|.=++.
T Consensus 86 g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~gd~V~V~G~v~~t~~gelel~~~~i~v 165 (529)
T 4ex5_A 86 SLEVAIAGRMMLKRVMGKASFATVQDGSGQIQFFVTPADVGAETYDAFKKWDLGDIVAARGVLFRTNKGELSVKCTQLRL 165 (529)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEECSSCEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred CcEEEEEEEEEeeecCCCeEEEEEEeCCeeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEEcCCCcEEEEEEEEEE
Confidence 88999999999885444 3455666554 56666544321 1 4899999999999988777777777765544
No 13
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=57.93 E-value=83 Score=26.37 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=55.8
Q ss_pred CeEEEccccccCCcccCCCCeEEEEEEeEeeccc-c--cEEEEEeCCe--EEEEecccccc----cccccCCEEEEEEEE
Q 033186 9 GALVNLTELHPSSQFYEEGASLRVTGKLQDYAVE-A--AMAIIADGNA--ILKIDTQHLRD----LSFRVGSIYQFIGEL 79 (125)
Q Consensus 9 g~~v~l~El~~~~~~~~~g~sVR~~GrL~~yD~~-~--~~a~l~~~g~--~l~Vdt~~v~~----~~~~igs~Yq~IGEl 79 (125)
-+-+.+.++. -..|+.|++-|++.+.=.. . ..+.|.+++. ++.++.+.+.. ..+.+|+...+-|.+
T Consensus 17 ~~~~~i~~~~-----~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~~~~~~~~~~l~~g~~V~V~G~v 91 (456)
T 3m4p_A 17 PIVCNIRDAA-----GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCEPEKVKLLTRECSLEITGRL 91 (456)
T ss_dssp CCCEECCSTT-----CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTTTTCHHHHTTCCTTCEEEEEEEE
T ss_pred ceEEEhhhhh-----hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEecccchhhHHhhcCCCccEEEEEeEE
Confidence 3456777872 2349999999999998554 2 3566666554 56666533221 258899999999999
Q ss_pred eeecC----------CceeEEEEEEEec
Q 033186 80 HIQAD----------CEAILQARVGRNV 97 (125)
Q Consensus 80 ~~~~d----------~~~~lkARV~r~V 97 (125)
...+. ++..|+|.=+.++
T Consensus 92 ~~~~~~~~~~~~~t~g~~El~~~~i~vl 119 (456)
T 3m4p_A 92 NAYAGKNHPPEIADILNLEMQVTEWKVI 119 (456)
T ss_dssp ECCCSSSCCCSCTTBCSSEEEEEEEEEE
T ss_pred EecCCcccCcccCCCCcEEEEEeEEEEE
Confidence 75442 4567777655444
No 14
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=57.10 E-value=63 Score=27.39 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=50.7
Q ss_pred CCeEEEEEEeEeecccc--cEEEEEeCCe--EEEEecccccc------cccccCCEEEEEEEEeeecCCceeEEEEEEEe
Q 033186 27 GASLRVTGKLQDYAVEA--AMAIIADGNA--ILKIDTQHLRD------LSFRVGSIYQFIGELHIQADCEAILQARVGRN 96 (125)
Q Consensus 27 g~sVR~~GrL~~yD~~~--~~a~l~~~g~--~l~Vdt~~v~~------~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~ 96 (125)
|+.|++-|++.+.=... ..+.|.+++. ++.++...+.+ -.+.+|+...+-|.+...+.++..++|.=++.
T Consensus 56 ~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~l~~g~~v~V~G~v~~~~~ge~ei~~~~i~v 135 (493)
T 3a74_A 56 QIEVAVAGRIMTKRGMGKAGFAHIQDVTGQIQIYVRQDDVGEQQYELFKISDLGDIVGVRGTMFKTKVGELSIKVSSYEF 135 (493)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCCTTCEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCEEEEEEEEEEEecCCCcEEEEEEECCEeEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCcEEEEEEEEEE
Confidence 88999999999876554 3456666665 55565443321 14899999999999988877777777765554
Q ss_pred c
Q 033186 97 V 97 (125)
Q Consensus 97 V 97 (125)
+
T Consensus 136 l 136 (493)
T 3a74_A 136 L 136 (493)
T ss_dssp E
T ss_pred c
Confidence 4
No 15
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=54.71 E-value=1e+02 Score=26.28 Aligned_cols=71 Identities=15% Similarity=0.227 Sum_probs=50.9
Q ss_pred CCeEEEEEEeEeecccc--cEEEEEeCCe--EEEEecccccc-------cccccCCEEEEEEEEeeecCCceeEEEEEEE
Q 033186 27 GASLRVTGKLQDYAVEA--AMAIIADGNA--ILKIDTQHLRD-------LSFRVGSIYQFIGELHIQADCEAILQARVGR 95 (125)
Q Consensus 27 g~sVR~~GrL~~yD~~~--~~a~l~~~g~--~l~Vdt~~v~~-------~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r 95 (125)
|+.|++-|++.+.=... ..+.|.+++. ++.++...+.+ -.+.+|+...+-|.+...+.++..++|.=++
T Consensus 64 ~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg~iQvv~~~~~~~~~~~~~~~~~l~~g~~V~V~G~v~~~~~ge~ei~~~~i~ 143 (504)
T 1e1o_A 64 NIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKKWDLGDIIGARGTLFKTQTGELSIHCTELR 143 (504)
T ss_dssp CCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSSTTHHHHTGGGCCTTCEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred CCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEECCcCCHHHHHHHHhcCCCCCEEEEEEEEEecCCceEEEEEEEEE
Confidence 88999999999876554 3456666655 66666543322 1478999999999998887777777776554
Q ss_pred ec
Q 033186 96 NV 97 (125)
Q Consensus 96 ~V 97 (125)
.+
T Consensus 144 vl 145 (504)
T 1e1o_A 144 LL 145 (504)
T ss_dssp EE
T ss_pred Ee
Confidence 44
No 16
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=54.25 E-value=57 Score=23.37 Aligned_cols=71 Identities=18% Similarity=0.121 Sum_probs=51.5
Q ss_pred EEEccccccCCc----ccCCCCeEEEEEEeE----eecccc--cEEEEEe-CCeEEEEecccccccccccCCEEEEEEEE
Q 033186 11 LVNLTELHPSSQ----FYEEGASLRVTGKLQ----DYAVEA--AMAIIAD-GNAILKIDTQHLRDLSFRVGSIYQFIGEL 79 (125)
Q Consensus 11 ~v~l~El~~~~~----~~~~g~sVR~~GrL~----~yD~~~--~~a~l~~-~g~~l~Vdt~~v~~~~~~igs~Yq~IGEl 79 (125)
++++.|+..... .-+.|+.+|+.|.+. .+|.+. =+=.|++ ++..|.|.-.=+-|-.|+=|.-.-..|.+
T Consensus 12 f~tpsei~~~~~~~~~~~~~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~GilPDlFrEGqgVVa~G~l 91 (136)
T 1j6q_A 12 FYTPSEIVNGKTDTGVKPEAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYDDLLPDLFREGQGIVAQGVL 91 (136)
T ss_dssp EECTTTTTTTSTTTTSSSCTTCEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEEEECSCCTTSCCSSSEEEEEEEE
T ss_pred eeCHHHHHcCcccccccCCCCCEEEEeEEEeCCcEEecCCCCEEEEEEEcCCCCEEEEEECCCCCccccCCCeEEEEEEE
Confidence 677888765431 156899999999985 344333 2334555 56688888888777779999999999998
Q ss_pred ee
Q 033186 80 HI 81 (125)
Q Consensus 80 ~~ 81 (125)
..
T Consensus 92 ~~ 93 (136)
T 1j6q_A 92 GE 93 (136)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 17
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=51.26 E-value=1.1e+02 Score=25.58 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=49.8
Q ss_pred CCCeEEEEEEeEeecccccE--EEEEeCCe--EEEEecccccc------cccccCCEEEEEEEEeeecC--CceeEEEEE
Q 033186 26 EGASLRVTGKLQDYAVEAAM--AIIADGNA--ILKIDTQHLRD------LSFRVGSIYQFIGELHIQAD--CEAILQARV 93 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~~~--a~l~~~g~--~l~Vdt~~v~~------~~~~igs~Yq~IGEl~~~~d--~~~~lkARV 93 (125)
.|+.|++-|++.+.=...+. +.|.+++. ++.++...+.+ -.+..|+...+-|.+...+. ++..|+|.=
T Consensus 15 ~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~V~V~G~v~~~~~~~~~~el~~~~ 94 (438)
T 3nem_A 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQITAPKKKVDPELFKLIPKLRSEDVVAVEGVVNFTPKAKLGFEILPEK 94 (438)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEETTTSCHHHHHHGGGCCTTCEEEEEEEEEECTTSTTSEEEEEEE
T ss_pred CCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCcCCHHHHHHHhcCCCCCEEEEEEEEEeCCCCCCcEEEEEEE
Confidence 48999999999988555443 45666664 56666554321 25899999999999987654 566776654
Q ss_pred EEe
Q 033186 94 GRN 96 (125)
Q Consensus 94 ~r~ 96 (125)
+..
T Consensus 95 i~v 97 (438)
T 3nem_A 95 IVV 97 (438)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 18
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=48.04 E-value=1.2e+02 Score=25.15 Aligned_cols=72 Identities=11% Similarity=0.089 Sum_probs=49.2
Q ss_pred CCCeEEEEEEeEeeccccc--EEEEEeCCe--EEEEecccccc------cccccCCEEEEEEEEeeecCC--ceeEEEEE
Q 033186 26 EGASLRVTGKLQDYAVEAA--MAIIADGNA--ILKIDTQHLRD------LSFRVGSIYQFIGELHIQADC--EAILQARV 93 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~~--~a~l~~~g~--~l~Vdt~~v~~------~~~~igs~Yq~IGEl~~~~d~--~~~lkARV 93 (125)
.|+.|++-|++.+.=...+ .+.|.+++. ++.++...+.+ -.+..|+...+-|.+...+.+ +..++|.=
T Consensus 15 ~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~~~~~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~ 94 (434)
T 1x54_A 15 DGKKVRLAGWVYTNMRVGKKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEK 94 (434)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECHHHHCHHHHHHHHTCCTTCEEEEEEEEEECTTSGGGEEEEEEE
T ss_pred CCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEECCcCCHHHHHHHhcCCCCCEEEEEEEEEecCCCCccEEEEEeE
Confidence 5899999999998866654 355556655 55555433321 258999999999999887654 56777654
Q ss_pred EEec
Q 033186 94 GRNV 97 (125)
Q Consensus 94 ~r~V 97 (125)
+.++
T Consensus 95 ~~vl 98 (434)
T 1x54_A 95 LEVI 98 (434)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4433
No 19
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=47.99 E-value=52 Score=23.01 Aligned_cols=44 Identities=14% Similarity=0.052 Sum_probs=36.0
Q ss_pred cccCCCCeEEEE--------EEeEeecccccEEEEEeC--C--eEEEEeccccccc
Q 033186 22 QFYEEGASLRVT--------GKLQDYAVEAAMAIIADG--N--AILKIDTQHLRDL 65 (125)
Q Consensus 22 ~~~~~g~sVR~~--------GrL~~yD~~~~~a~l~~~--g--~~l~Vdt~~v~~~ 65 (125)
..+..|..||++ |.+...|.+..++++.-. | .++.++...++..
T Consensus 90 ~~~~~Gd~VrI~~Gpf~g~~g~V~~vd~~k~~v~V~v~~~gr~tpvel~~~~v~~i 145 (152)
T 3p8b_B 90 SGLEPGDLVEVIAGPFKGQKAKVVKIDESKDEVVVQFIDAIVPIPVTIKGDYVRLI 145 (152)
T ss_dssp TTCCTTCEEEECSSTTTTCEEEEEEEETTTTEEEEEESSCSSCCEEEEEGGGEEEE
T ss_pred ccCCCCCEEEEeeecCCCCEEEEEEEeCCCCEEEEEEEecceeEEEEECHHHEEEe
Confidence 457789999986 999999999999888862 2 3899999998864
No 20
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=46.83 E-value=1.2e+02 Score=25.00 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=47.8
Q ss_pred CCCCeEEEEEEeEeecccccE--EEEEeCCe--EEEEecccccccccc-cCCEEEEEEEEeeecCC--ceeEEEEEEEec
Q 033186 25 EEGASLRVTGKLQDYAVEAAM--AIIADGNA--ILKIDTQHLRDLSFR-VGSIYQFIGELHIQADC--EAILQARVGRNV 97 (125)
Q Consensus 25 ~~g~sVR~~GrL~~yD~~~~~--a~l~~~g~--~l~Vdt~~v~~~~~~-igs~Yq~IGEl~~~~d~--~~~lkARV~r~V 97 (125)
..|+.|++-|++.+.=...+. +.|.+++. ++.++. -.+. .|+...+-|.+...+.+ +..++|.=+.++
T Consensus 11 ~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~-----~~l~~~~~~v~v~G~v~~~~~~~~~~el~~~~~~vl 85 (422)
T 1n9w_A 11 HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGG-----LKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVL 85 (422)
T ss_dssp CTTSEEEEEEEEEEEEECSSEEEEEEEETTEEEEEEEES-----CCCCCTTCEEEEEEEEEECTTSTTSEEEEEEEEEEE
T ss_pred cCCCEEEEEEEEEEEecCCCeEEEEEEECCEEEEEEEEc-----cccCCCCCEEEEEEEEEecCCCCccEEEEEeEEEEe
Confidence 358999999999988766543 45556655 444443 3578 99999999999887643 567766544444
No 21
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=44.13 E-value=89 Score=22.63 Aligned_cols=86 Identities=10% Similarity=0.195 Sum_probs=59.5
Q ss_pred CeEEEEEEeEeecccccEEEEEe-C--CeEEEEecccc-------cccccccCCEEEEEEEEeeecCCceeEEEEEEEec
Q 033186 28 ASLRVTGKLQDYAVEAAMAIIAD-G--NAILKIDTQHL-------RDLSFRVGSIYQFIGELHIQADCEAILQARVGRNV 97 (125)
Q Consensus 28 ~sVR~~GrL~~yD~~~~~a~l~~-~--g~~l~Vdt~~v-------~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~V 97 (125)
+-||+.|.+.+-|......+.+- + |++|.+-...- .+.++.+|++..+-|.+.... +.-.+.|--++.+
T Consensus 48 ~~V~IvGiVv~~~~~~~~~~ytIDD~TG~~I~cv~w~~~~~~~~~~~~~l~~G~~VrV~G~v~~fr-~~rqI~~~~i~~v 126 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYEGKHVLTVDDCSGMVLRVVFIIQDDFSMSKRAISMSPGNVVCVFGKINSFR-SEVELIAQSFEEL 126 (159)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEECSSSCEEEEEEEGGGCHHHHHHHTTCCTTCEEEEEEEEECSS-SSCEEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEeCCEEEEEEecCCCCeEEEEEEccCCCCcccccccCCCCCEEEEEEEEEeeC-CEEEEEEEEEEEC
Confidence 56999999999998888776664 2 33444322111 123579999999999998753 3468999999999
Q ss_pred cCCCHHH--HHHHHHHHHH
Q 033186 98 DGLDLNL--YRQSLQLLRQ 114 (125)
Q Consensus 98 DglDl~L--~ekal~~~R~ 114 (125)
+.+|... .++.++.+++
T Consensus 127 ~d~n~Ev~~W~~~~r~~~~ 145 (159)
T 3kf6_A 127 RDPNDEWKAWQKRMRYKKN 145 (159)
T ss_dssp CSTHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHh
Confidence 8777543 4555555555
No 22
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=42.67 E-value=29 Score=26.87 Aligned_cols=26 Identities=12% Similarity=0.313 Sum_probs=20.8
Q ss_pred cccCCCCeEEEEEEeEeecccccEEE
Q 033186 22 QFYEEGASLRVTGKLQDYAVEAAMAI 47 (125)
Q Consensus 22 ~~~~~g~sVR~~GrL~~yD~~~~~a~ 47 (125)
..+++|.-|||.|++..|.-..+..+
T Consensus 118 ~~~~~G~yVrV~G~v~~f~g~~qi~i 143 (270)
T 2pi2_A 118 TVVPPETYVKVAGHLRSFQNKKSLVA 143 (270)
T ss_dssp CCCCTTCEEEEEEEEEEETTEEEEEE
T ss_pred hcCCCCCEEEEEEEEEecCCeeEEEE
Confidence 56889999999999999975544443
No 23
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=41.44 E-value=54 Score=19.33 Aligned_cols=31 Identities=13% Similarity=0.144 Sum_probs=21.7
Q ss_pred EEEeEeecccccEEEEEe--CC--eEEEEeccccc
Q 033186 33 TGKLQDYAVEAAMAIIAD--GN--AILKIDTQHLR 63 (125)
Q Consensus 33 ~GrL~~yD~~~~~a~l~~--~g--~~l~Vdt~~v~ 63 (125)
-|.+...|.+..++++.- =| ..+.++...++
T Consensus 22 ~g~v~~v~~~k~~v~V~v~~~Gr~t~v~l~~~~ve 56 (58)
T 1nz9_A 22 TGTVTEINPERGKVKVMVTIFGRETPVELDFSQVV 56 (58)
T ss_dssp EEEEEEEETTTTEEEEEEESSSSEEEEEECGGGEE
T ss_pred EEEEEEEcCCCCEEEEEEEeCCCEEEEEECHHHEE
Confidence 489999999988887654 22 26666666554
No 24
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=41.20 E-value=1.6e+02 Score=24.76 Aligned_cols=72 Identities=7% Similarity=0.049 Sum_probs=49.5
Q ss_pred CCCeEEEEEEeEeeccccc---EEEEEeCCe--EEEEecc--c-ccc------cccccCCEEEEEEEEeeecC-------
Q 033186 26 EGASLRVTGKLQDYAVEAA---MAIIADGNA--ILKIDTQ--H-LRD------LSFRVGSIYQFIGELHIQAD------- 84 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~~---~a~l~~~g~--~l~Vdt~--~-v~~------~~~~igs~Yq~IGEl~~~~d------- 84 (125)
.|+.|++-|++.+.=...+ .+.|.+++. ++.++.. . +.+ -.++.|+...+-|.+...+.
T Consensus 35 ~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ 114 (487)
T 1eov_A 35 SDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATV 114 (487)
T ss_dssp TTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEEEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSE
T ss_pred CCCEEEEEEEEEEeeccCCccEEEEEEECCccEEEEEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCC
Confidence 4899999999998865543 567777665 5556543 1 221 14889999999999987752
Q ss_pred CceeEEEEEEEec
Q 033186 85 CEAILQARVGRNV 97 (125)
Q Consensus 85 ~~~~lkARV~r~V 97 (125)
++..|+|.=+.++
T Consensus 115 g~~El~~~~i~vl 127 (487)
T 1eov_A 115 QNLEIHITKIYTI 127 (487)
T ss_dssp EEEEEEEEEEEEE
T ss_pred CcEEEEEEEEEEe
Confidence 3567766544444
No 25
>4dka_C RNA-editing complex protein MP81; krepa1, VHH, single domain antibody, protein binding, RNA BI protein-immune system complex; 1.97A {Trypanosoma brucei} PDB: 4dk3_C 4dk6_C
Probab=38.00 E-value=23 Score=24.80 Aligned_cols=24 Identities=17% Similarity=0.115 Sum_probs=19.4
Q ss_pred cccCCCCeEEEEEEeEe---ecccccE
Q 033186 22 QFYEEGASLRVTGKLQD---YAVEAAM 45 (125)
Q Consensus 22 ~~~~~g~sVR~~GrL~~---yD~~~~~ 45 (125)
+++++|.+|++.|||.. ||...++
T Consensus 59 ~~lk~g~~v~V~GrLRm~p~~d~~~kk 85 (105)
T 4dka_C 59 DQVKLGSRVLVQGTLRMNRHVDDVSKR 85 (105)
T ss_dssp -CCCTTCEEEEEEEEECCCEECTTTCS
T ss_pred HHHhCCCEEEEEeEEEeeeccccccce
Confidence 68999999999999974 6776655
No 26
>3d3r_A Hydrogenase assembly chaperone HYPC/HUPF; small beta-barrel, structural genomics, PSI-2, protein struc initiative; 1.85A {Shewanella oneidensis} SCOP: b.40.14.1
Probab=35.76 E-value=1.1e+02 Score=21.08 Aligned_cols=72 Identities=14% Similarity=0.212 Sum_probs=51.5
Q ss_pred eEEEEEEeEeecccccEEEEEeCCeEEEEecccccccccccCCEEEEEEEEeeecCCceeEEEEEEEeccCCCHHHHHHH
Q 033186 29 SLRVTGKLQDYAVEAAMAIIADGNAILKIDTQHLRDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQS 108 (125)
Q Consensus 29 sVR~~GrL~~yD~~~~~a~l~~~g~~l~Vdt~~v~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~VDglDl~L~eka 108 (125)
++=+=||+.+.+-....|++..+|..-.|+..++++ ..++|.+. -+.++-.+.-||-.-.+++
T Consensus 23 CLaIP~kVveI~~~~~~A~Vd~~Gv~reV~l~Lv~e-~~~vGDyV----------------LVHvGfAi~kIDeeeA~et 85 (103)
T 3d3r_A 23 CLSIPSQVVAVDNERQSVTVDTLGVRRDVSSHLMTE-PLAIGDYV----------------LIHIGFVMNKIDRNDALQS 85 (103)
T ss_dssp EECCCEEEEEEETTTTEEEEEETTEEEEEECTTBSS-CCCTTCEE----------------EEEEEEEEEEECHHHHHHH
T ss_pred EEecCEEEEEEeCCCCEEEEEcCCEEEEEEEEeecC-CCCCCCEE----------------EEeechhhhhCCHHHHHHH
Confidence 445557777777555889999999777899999952 24555543 3455666777888888888
Q ss_pred HHHHHHHHh
Q 033186 109 LQLLRQFQA 117 (125)
Q Consensus 109 l~~~R~f~~ 117 (125)
++.-+...+
T Consensus 86 l~~l~el~~ 94 (103)
T 3d3r_A 86 LELYQEIVS 94 (103)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 887776544
No 27
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=33.48 E-value=2e+02 Score=23.69 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=47.5
Q ss_pred CCCeEEEEEEeEeeccccc--EEEEEeCCe--EEEEecccccc----cccccCCEEEEEEEEeeecCC--ceeEEEEEEE
Q 033186 26 EGASLRVTGKLQDYAVEAA--MAIIADGNA--ILKIDTQHLRD----LSFRVGSIYQFIGELHIQADC--EAILQARVGR 95 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~~--~a~l~~~g~--~l~Vdt~~v~~----~~~~igs~Yq~IGEl~~~~d~--~~~lkARV~r 95 (125)
.|+.|++-|++.+.=...+ .+.|.+++. ++.++... +. -.+..|+...+-|.+...+.+ +..++|.=+.
T Consensus 15 ~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~iQ~v~~~~~-~~~~~~~~l~~~~~v~v~G~v~~~~~~~~~~el~~~~~~ 93 (429)
T 1wyd_A 15 DGKEVIWAGWVHLLRDLGGKKFIILRDKTGLGQVVVDKNS-SAFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEIT 93 (429)
T ss_dssp TTCEEEEEEEEEEEEEETTEEEEEEEETTEEEEEEECTTS-TTHHHHTTCCTTCEEEEEEEEEECSSSGGGEEEEEEEEE
T ss_pred CCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCh-HHHHHHHhCCCCCEEEEEEEEEecCCCCccEEEEEeEEE
Confidence 5899999999998866554 355556655 55554332 22 257999999999999887644 5677665433
No 28
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=31.67 E-value=1.2e+02 Score=20.60 Aligned_cols=74 Identities=11% Similarity=0.090 Sum_probs=51.0
Q ss_pred CeEEEEEEeEeecccccEEEEEe-CC-eEE----EEecccc---cccccccCCEEEEEEEEeeecCCceeEEEEEEEecc
Q 033186 28 ASLRVTGKLQDYAVEAAMAIIAD-GN-AIL----KIDTQHL---RDLSFRVGSIYQFIGELHIQADCEAILQARVGRNVD 98 (125)
Q Consensus 28 ~sVR~~GrL~~yD~~~~~a~l~~-~g-~~l----~Vdt~~v---~~~~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~VD 98 (125)
..|++.|.+.+.+.......+.- ++ .+| ..++... ..-.++.|....+.|.+... .+...++|.-+|-|+
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~~f-~g~~qi~~~~ir~v~ 115 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLKSF-QNRRSISSGHMRPVI 115 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEEEE-TTEEEEEESEEEECS
T ss_pred EEEEEEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEEEe-CCEEEEEEEEEEECC
Confidence 46799999999988777666554 22 232 3333321 12368999999999999875 445688999999998
Q ss_pred CCCH
Q 033186 99 GLDL 102 (125)
Q Consensus 99 glDl 102 (125)
.+|-
T Consensus 116 d~Ne 119 (136)
T 4gop_B 116 DYNE 119 (136)
T ss_dssp SHHH
T ss_pred CccH
Confidence 8774
No 29
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=31.36 E-value=44 Score=24.30 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=18.8
Q ss_pred cCCCCeEEEEEEeEeecccccE
Q 033186 24 YEEGASLRVTGKLQDYAVEAAM 45 (125)
Q Consensus 24 ~~~g~sVR~~GrL~~yD~~~~~ 45 (125)
+..|..||+.|++..|.-..+.
T Consensus 97 l~~G~~VrV~G~v~~fr~~rqI 118 (159)
T 3kf6_A 97 MSPGNVVCVFGKINSFRSEVEL 118 (159)
T ss_dssp CCTTCEEEEEEEEECSSSSCEE
T ss_pred CCCCCEEEEEEEEEeeCCEEEE
Confidence 6789999999999999766554
No 30
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=30.07 E-value=66 Score=21.49 Aligned_cols=42 Identities=10% Similarity=0.168 Sum_probs=26.7
Q ss_pred EEccccccCCcccCCCCeEEEE-EEeEeecccccEEEEEeCC-eEEEEe
Q 033186 12 VNLTELHPSSQFYEEGASLRVT-GKLQDYAVEAAMAIIADGN-AILKID 58 (125)
Q Consensus 12 v~l~El~~~~~~~~~g~sVR~~-GrL~~yD~~~~~a~l~~~g-~~l~Vd 58 (125)
+++|+ +.++.+.+|..|++- |++..|. +.-.|..+. ..|.++
T Consensus 53 ~tlW~--~~~~~~~~G~vv~i~~g~v~~~~---g~~qL~i~~~~~i~~~ 96 (119)
T 1o7i_A 53 LTLWG--KHAGSIKEGQVVKIENAWTTAFK---GQVQLNAGSKTKIAEA 96 (119)
T ss_dssp EEEEG--GGTTCCCTTCEEEEEEEEEEEET---TEEEEEECTTCEEEEC
T ss_pred EEEEC--ChhhcCCCCCEEEEEeEEEEEeC---CEEEEEECCCEEEEEc
Confidence 45666 334568899999999 9999983 434443322 255543
No 31
>3be3_A Uncharacterized protein; PFAM DUF1653, PSI-2, structural genomics, protein structure initiative; 2.04A {Bordetella bronchiseptica RB50}
Probab=29.93 E-value=49 Score=22.44 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=17.4
Q ss_pred cccCCEEEEEEEEeeecCCceeE
Q 033186 67 FRVGSIYQFIGELHIQADCEAIL 89 (125)
Q Consensus 67 ~~igs~Yq~IGEl~~~~d~~~~l 89 (125)
++ |.+|++||...+.+..+.++
T Consensus 16 yK-G~~Y~Vl~vA~HSET~E~mV 37 (91)
T 3be3_A 16 YK-GDHYLALGLARADETDEVVV 37 (91)
T ss_dssp TT-SCEEEEEEEEEETTTTEEEE
T ss_pred eC-CCeEEEEEEEEEcCCCcEEE
Confidence 45 89999999999877766544
No 32
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=29.90 E-value=2.7e+02 Score=23.99 Aligned_cols=72 Identities=13% Similarity=0.078 Sum_probs=48.4
Q ss_pred CCCeEEEEEEeEeeccccc--EEEEEeCCe--EEEEecccccc----cccccCCEEEEEEEEeeec---------CCcee
Q 033186 26 EGASLRVTGKLQDYAVEAA--MAIIADGNA--ILKIDTQHLRD----LSFRVGSIYQFIGELHIQA---------DCEAI 88 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~~--~a~l~~~g~--~l~Vdt~~v~~----~~~~igs~Yq~IGEl~~~~---------d~~~~ 88 (125)
.|+.|++-|++.+.=...+ .+.|.+++. ++.++...-+. -.++.|+...+-|.+...+ .++..
T Consensus 14 ~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~~geiE 93 (585)
T 1c0a_A 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIE 93 (585)
T ss_dssp TTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECGGGHHHHHHHTTCCTTCEEEEEEEEEECCTTTCCTTSTTTTEE
T ss_pred CCCEEEEEEEEEEEecCCCcEEEEEEECCeeEEEEEeCCchHHHHHHhcCCCCCEEEEEeEEEccCcccccccCCCccEE
Confidence 3899999999998855443 466666665 55565432111 1579999999999998763 34567
Q ss_pred EEEEEEEec
Q 033186 89 LQARVGRNV 97 (125)
Q Consensus 89 lkARV~r~V 97 (125)
++|.=+.++
T Consensus 94 l~~~~i~vl 102 (585)
T 1c0a_A 94 VLASSLTII 102 (585)
T ss_dssp EEEEEEEEE
T ss_pred EEEeEEEEE
Confidence 776655444
No 33
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=29.38 E-value=1.3e+02 Score=20.00 Aligned_cols=76 Identities=17% Similarity=0.180 Sum_probs=44.0
Q ss_pred CeEEEccccccCCcccCCCCeEEEEEEeEeeccccc------------EEEEEeCCeEEEEecc-cccccccccCCEEEE
Q 033186 9 GALVNLTELHPSSQFYEEGASLRVTGKLQDYAVEAA------------MAIIADGNAILKIDTQ-HLRDLSFRVGSIYQF 75 (125)
Q Consensus 9 g~~v~l~El~~~~~~~~~g~sVR~~GrL~~yD~~~~------------~a~l~~~g~~l~Vdt~-~v~~~~~~igs~Yq~ 75 (125)
..++.+.||.| |..|-+.|++.+...... .++|.++..++.+-.- ..-.+.++.|..|.|
T Consensus 3 ~~~~~I~dL~~-------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a~~~l~~Gdvv~i 75 (105)
T 3dm3_A 3 KDTYNIGELSP-------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLTDIDVGRGDYVRV 75 (105)
T ss_dssp -CEECGGGCCS-------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGGGSCCCTTCEEEE
T ss_pred ccceEHHHCCC-------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECcccccccCCCCEEEE
Confidence 34555556555 467888888776653221 3455554445554321 111237899999999
Q ss_pred EEEEeeecCCceeEEE
Q 033186 76 IGELHIQADCEAILQA 91 (125)
Q Consensus 76 IGEl~~~~d~~~~lkA 91 (125)
-|.+....+++..|.+
T Consensus 76 ~g~vk~~~~g~~eL~~ 91 (105)
T 3dm3_A 76 RGYIREGYYGGLECTA 91 (105)
T ss_dssp EEEEEECTTSSEEEEE
T ss_pred EEEEEEccCCCEEEEe
Confidence 9988765444555543
No 34
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=29.18 E-value=2.8e+02 Score=23.94 Aligned_cols=71 Identities=8% Similarity=0.033 Sum_probs=47.6
Q ss_pred CCCeEEEEEEeEeeccccc--EEEEEeCCe--EEEEecccccc----cccccCCEEEEEEEEeeec-------CCceeEE
Q 033186 26 EGASLRVTGKLQDYAVEAA--MAIIADGNA--ILKIDTQHLRD----LSFRVGSIYQFIGELHIQA-------DCEAILQ 90 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~~--~a~l~~~g~--~l~Vdt~~v~~----~~~~igs~Yq~IGEl~~~~-------d~~~~lk 90 (125)
.|+.|++-|++.+.=...+ .+.|.+++. ++.++... +. -.++.|+...+-|.+...+ .++..++
T Consensus 15 ~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g~iQvv~~~~~-~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~ge~Ei~ 93 (580)
T 1l0w_A 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVAHPAS-PAYATAERVRPEWVVRAKGLVRLRPEPNPRLATGRVEVE 93 (580)
T ss_dssp TTCEEEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTS-TTHHHHTTCCTTCEEEEEEEEEECSSCCTTSTTTTEEEE
T ss_pred CCCEEEEEEEEEEEecCCCeEEEEEEECCeeEEEEEeCCh-hHHHHHhcCCCCcEEEEEEEEEcCCCcCccCCCccEEEE
Confidence 3899999999998865443 456666665 55554432 11 1479999999999998763 3456676
Q ss_pred EEEEEec
Q 033186 91 ARVGRNV 97 (125)
Q Consensus 91 ARV~r~V 97 (125)
|.=+.++
T Consensus 94 ~~~i~vl 100 (580)
T 1l0w_A 94 LSALEVL 100 (580)
T ss_dssp EEEEEEE
T ss_pred EeEEEEe
Confidence 6544433
No 35
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=29.10 E-value=76 Score=21.67 Aligned_cols=28 Identities=21% Similarity=0.592 Sum_probs=19.9
Q ss_pred EEccc-cccCCcccCCCCeEEEEEEeEeec
Q 033186 12 VNLTE-LHPSSQFYEEGASLRVTGKLQDYA 40 (125)
Q Consensus 12 v~l~E-l~~~~~~~~~g~sVR~~GrL~~yD 40 (125)
+..|+ +..... ...|..|-+-|+|++|+
T Consensus 54 ivvw~klAe~~~-~~kG~~v~v~G~lrsy~ 82 (107)
T 4gs3_A 54 ITISNRLFEGMN-LEVGTRVKIEGQLRSYN 82 (107)
T ss_dssp EEEEGGGSTTCC-CCTTCEEEEEEEEEEEE
T ss_pred EEEEhHHhhHHh-hcCCCEEEEEEEEEecc
Confidence 44555 444444 34799999999999874
No 36
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=29.04 E-value=1.9e+02 Score=22.05 Aligned_cols=93 Identities=10% Similarity=0.068 Sum_probs=61.0
Q ss_pred eEEEccccccCC----cccCCC---CeEEEEEEeEeecccccEEEEEe---CC-e---EEEEecccc--cccccccCCEE
Q 033186 10 ALVNLTELHPSS----QFYEEG---ASLRVTGKLQDYAVEAAMAIIAD---GN-A---ILKIDTQHL--RDLSFRVGSIY 73 (125)
Q Consensus 10 ~~v~l~El~~~~----~~~~~g---~sVR~~GrL~~yD~~~~~a~l~~---~g-~---~l~Vdt~~v--~~~~~~igs~Y 73 (125)
.+|++..|.+.. .+.-.| ..|+++|.+.+.+.......++- .| . .++.+...- ..-.++.|...
T Consensus 47 ~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yV 126 (270)
T 2pi2_A 47 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYV 126 (270)
T ss_dssp EECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEE
T ss_pred EEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEE
Confidence 567777765552 233334 46899999999988776666664 22 1 223333221 12368999999
Q ss_pred EEEEEEeeecCCceeEEEEEEEeccCCCHH
Q 033186 74 QFIGELHIQADCEAILQARVGRNVDGLDLN 103 (125)
Q Consensus 74 q~IGEl~~~~d~~~~lkARV~r~VDglDl~ 103 (125)
.+.|.+... ++...+++.-.|-|+..|-=
T Consensus 127 rV~G~v~~f-~g~~qi~i~~ir~v~d~nEi 155 (270)
T 2pi2_A 127 KVAGHLRSF-QNKKSLVAFKIMPLEDMNEF 155 (270)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEECSCTHHH
T ss_pred EEEEEEEec-CCeeEEEEEEEEecCCHhHH
Confidence 999999875 34568888888989887753
No 37
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=26.74 E-value=1.2e+02 Score=18.78 Aligned_cols=48 Identities=8% Similarity=0.210 Sum_probs=37.8
Q ss_pred EEEEEeEeecccccEEEEEeCC--eEEEEecccccc--c-ccccCCEEEEEEE
Q 033186 31 RVTGKLQDYAVEAAMAIIADGN--AILKIDTQHLRD--L-SFRVGSIYQFIGE 78 (125)
Q Consensus 31 R~~GrL~~yD~~~~~a~l~~~g--~~l~Vdt~~v~~--~-~~~igs~Yq~IGE 78 (125)
|..|+++.||.+.+-.-|..++ ..+-|..+.+.. + .+..|...+|-=+
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~~ 57 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEIT 57 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCcCCCCCCEEEEEEE
Confidence 7889999999999999998733 478888877754 3 5889988877433
No 38
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}
Probab=26.19 E-value=3.3e+02 Score=23.85 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=49.1
Q ss_pred CCCeEEEEEEeEeecccccEEEEEeCCe--EEEEecccccc------cccccCCEEEEEEEEeeec---------CCcee
Q 033186 26 EGASLRVTGKLQDYAVEAAMAIIADGNA--ILKIDTQHLRD------LSFRVGSIYQFIGELHIQA---------DCEAI 88 (125)
Q Consensus 26 ~g~sVR~~GrL~~yD~~~~~a~l~~~g~--~l~Vdt~~v~~------~~~~igs~Yq~IGEl~~~~---------d~~~~ 88 (125)
.|+.|++-|++...= ......|.+++. ++.++.....+ -.++.|+...+-|.+...+ .++..
T Consensus 23 ~g~~V~l~GwV~~~R-~~~Fi~LrD~~g~iQvv~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiE 101 (617)
T 4ah6_A 23 LGQEVTLCGWIQYRR-QNTFLVLRDFDGLVQVIIPQDESAASVKKILCEAPVESVVQVSGTVISRPAGQENPKMPTGEIE 101 (617)
T ss_dssp TTCEEEEEEEECCCC-TTTEEEEECSSCEEEEECCCSSSSHHHHHHHHHCCSSCEEEEEEEEEECSTTCCCTTSTTTTEE
T ss_pred CCCEEEEEEEeeeec-CeEEEEEEeCCcCEEEEEeCCcCcHHHHHHHhcCCCCCEEEEEEEEEeCCccccCccCCCCcEE
Confidence 589999999999874 346888887554 55555443311 1589999999999997643 23567
Q ss_pred EEEEEEEec
Q 033186 89 LQARVGRNV 97 (125)
Q Consensus 89 lkARV~r~V 97 (125)
++|.=++++
T Consensus 102 l~~~~i~vL 110 (617)
T 4ah6_A 102 IKVKTAELL 110 (617)
T ss_dssp EEEEEEEEE
T ss_pred EEEeEEEEe
Confidence 777655443
No 39
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=25.83 E-value=1.4e+02 Score=19.48 Aligned_cols=46 Identities=11% Similarity=0.121 Sum_probs=35.8
Q ss_pred EEEEEeEeecccccEEEEEe--CCeEEEEecccccc--c---ccccCCEEEEE
Q 033186 31 RVTGKLQDYAVEAAMAIIAD--GNAILKIDTQHLRD--L---SFRVGSIYQFI 76 (125)
Q Consensus 31 R~~GrL~~yD~~~~~a~l~~--~g~~l~Vdt~~v~~--~---~~~igs~Yq~I 76 (125)
+..|+++.||...+-.-|.. ++.-+.|..+.+.. + .++.|..|++.
T Consensus 16 ~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~ 68 (101)
T 2bh8_A 16 KMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGK 68 (101)
T ss_dssp CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEE
T ss_pred cceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEE
Confidence 56899999999999998885 33577787777763 3 68889888753
No 40
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=24.35 E-value=1.6e+02 Score=20.45 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=24.9
Q ss_pred cEEEEEe--CCeEEEEecccccccccccCCEEEEE
Q 033186 44 AMAIIAD--GNAILKIDTQHLRDLSFRVGSIYQFI 76 (125)
Q Consensus 44 ~~a~l~~--~g~~l~Vdt~~v~~~~~~igs~Yq~I 76 (125)
..+++.. +|..+.|+-.++|+..++.|....++
T Consensus 46 ~~c~V~l~~~g~~v~v~q~~LETViP~~g~~V~Iv 80 (127)
T 2ckk_A 46 YTAVVKMIDSGDKLKLDQTHLETVIPAPGKRILVL 80 (127)
T ss_dssp TEEEEEETTTCCEEEEEGGGEEECCCCTTCEEEEC
T ss_pred CeEEEEECCCCCEEEEchHHcEEecCCCCCEEEEE
Confidence 3444443 55678899999999877899988775
No 41
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=22.00 E-value=45 Score=24.33 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=25.9
Q ss_pred ccccCCEEEEEEEEeeecCCceeEEEEEEEeccCCCHHHHHHHHHHH
Q 033186 66 SFRVGSIYQFIGELHIQADCEAILQARVGRNVDGLDLNLYRQSLQLL 112 (125)
Q Consensus 66 ~~~igs~Yq~IGEl~~~~d~~~~lkARV~r~VDglDl~L~ekal~~~ 112 (125)
.+.++-.|++.|.=+ ++ +-.| -.|=|+..++|||.+.
T Consensus 68 efni~v~y~imgsgs-----gv-m~i~----f~gddlea~ekalkem 104 (170)
T 4hhu_A 68 EFNINVQYQIMGSGS-----GV-MVIV----FEGDDLEALEKALKEM 104 (170)
T ss_dssp HHTCEEEEEEECTTC-----CE-EEEE----EECSCHHHHHHHHHHH
T ss_pred hcceEEEEEEEeCCc-----eE-EEEE----EecCcHHHHHHHHHHH
Confidence 477888999998532 12 2211 2789999999999764
No 42
>1qd7_I S17 ribosomal protein; 30S ribosomal subunit, low resolution model, ribosome; 5.50A {Thermus thermophilus} SCOP: i.1.1.3 PDB: 1eg0_G 1rip_A
Probab=20.85 E-value=1.1e+02 Score=20.36 Aligned_cols=30 Identities=23% Similarity=0.376 Sum_probs=22.7
Q ss_pred CCCCCCCeEEEccccccCCcccCCCCeEEEEEEe
Q 033186 3 SSAIKSGALVNLTELHPSSQFYEEGASLRVTGKL 36 (125)
Q Consensus 3 ~~~~~~g~~v~l~El~~~~~~~~~g~sVR~~GrL 36 (125)
....+.|++|.+.|++|-|. -++-++...+
T Consensus 47 ~n~~k~GD~V~I~E~RPlSK----tK~~~vv~iv 76 (89)
T 1qd7_I 47 HNEAKVGDIVKIMETRPLSA----TKRFRLVEIV 76 (89)
T ss_pred ccCCCCCCEEEEEEcccCCC----CEEEEEEEEE
Confidence 34678999999999999885 5566666554
Done!