Query 033187
Match_columns 125
No_of_seqs 121 out of 1035
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:53:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033187.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033187hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14542 nucleoside diphosphat 100.0 1.1E-48 2.4E-53 271.6 12.7 121 1-121 1-121 (137)
2 COG0105 Ndk Nucleoside diphosp 100.0 1.3E-48 2.8E-53 265.3 11.2 122 1-122 2-123 (135)
3 PRK14541 nucleoside diphosphat 100.0 6.1E-48 1.3E-52 268.8 12.7 121 1-121 1-121 (140)
4 PTZ00093 nucleoside diphosphat 100.0 2.1E-47 4.6E-52 268.5 12.9 121 1-121 2-122 (149)
5 PRK14545 nucleoside diphosphat 100.0 2.6E-47 5.6E-52 265.4 12.7 121 1-121 3-123 (139)
6 PRK14540 nucleoside diphosphat 100.0 4.6E-47 1E-51 262.8 13.0 121 1-121 2-122 (134)
7 cd04415 NDPk7A Nucleoside diph 100.0 7.7E-47 1.7E-51 260.7 11.2 118 2-121 1-121 (131)
8 cd04413 NDPk_I Nucleoside diph 100.0 2.5E-46 5.4E-51 258.0 12.1 120 2-121 1-120 (130)
9 PRK00668 ndk mulitfunctional n 100.0 2.5E-46 5.5E-51 259.1 12.1 121 1-121 1-121 (134)
10 cd04412 NDPk7B Nucleoside diph 100.0 9.3E-46 2E-50 256.3 11.8 120 2-121 1-124 (134)
11 cd04418 NDPk5 Nucleoside dipho 100.0 1.1E-45 2.4E-50 255.3 11.4 118 2-121 1-121 (132)
12 PLN02931 nucleoside diphosphat 100.0 1.4E-45 3E-50 264.9 11.9 121 1-121 29-152 (177)
13 cd00595 NDPk Nucleoside diphos 100.0 2.7E-45 5.9E-50 253.5 11.5 120 2-121 1-123 (133)
14 PLN02619 nucleoside-diphosphat 100.0 1.9E-45 4.2E-50 272.7 11.4 121 1-121 88-208 (238)
15 cd04414 NDPk6 Nucleoside dipho 100.0 4.1E-45 8.9E-50 253.3 11.7 120 2-121 1-124 (135)
16 PRK14543 nucleoside diphosphat 100.0 3.5E-45 7.6E-50 261.2 11.6 121 1-121 5-140 (169)
17 cd04416 NDPk_TX NDP kinase dom 100.0 4E-45 8.8E-50 252.5 10.6 119 2-121 1-122 (132)
18 PF00334 NDK: Nucleoside dipho 100.0 3E-45 6.4E-50 253.7 8.6 121 2-122 1-121 (135)
19 smart00562 NDK These are enzym 100.0 7E-44 1.5E-48 246.9 11.7 120 2-121 1-120 (135)
20 PRK14544 nucleoside diphosphat 100.0 1.9E-42 4.2E-47 249.5 12.5 121 1-121 3-166 (183)
21 KOG0888 Nucleoside diphosphate 100.0 2.8E-41 6.1E-46 237.1 6.6 121 1-121 5-128 (156)
22 PF14454 Prok_Ub: Prokaryotic 84.3 0.6 1.3E-05 28.4 1.3 42 39-89 23-64 (65)
23 TIGR03738 PRTRC_C PRTRC system 78.5 0.67 1.4E-05 28.2 0.0 43 38-89 21-63 (66)
24 COG1799 Uncharacterized protei 75.9 10 0.00022 27.3 5.4 48 2-53 73-120 (167)
25 KOG0328 Predicted ATP-dependen 63.1 23 0.00051 28.1 5.4 102 16-117 151-274 (400)
26 PF04472 DUF552: Protein of un 62.3 24 0.00051 21.4 4.4 44 5-52 1-44 (73)
27 PRK09283 delta-aminolevulinic 60.8 9.3 0.0002 30.3 2.9 46 7-54 161-206 (323)
28 cd00384 ALAD_PBGS Porphobilino 60.0 7.2 0.00016 30.7 2.1 46 7-54 153-198 (314)
29 PF04339 DUF482: Protein of un 57.5 20 0.00043 28.9 4.3 60 23-82 193-264 (370)
30 PRK13384 delta-aminolevulinic 55.4 11 0.00023 29.9 2.4 46 7-54 163-208 (322)
31 cd04823 ALAD_PBGS_aspartate_ri 53.6 9.9 0.00022 30.1 2.0 46 7-54 158-203 (320)
32 COG0113 HemB Delta-aminolevuli 46.8 20 0.00044 28.4 2.7 46 7-54 166-211 (330)
33 PF06130 PduL: Propanediol uti 41.2 23 0.0005 21.7 1.9 20 31-50 4-23 (71)
34 TIGR00640 acid_CoA_mut_C methy 40.6 1.1E+02 0.0024 20.7 5.4 42 5-48 7-48 (132)
35 PF01408 GFO_IDH_MocA: Oxidore 40.1 87 0.0019 19.8 4.7 45 5-53 66-110 (120)
36 COG1724 Predicted RNA binding 37.5 53 0.0011 20.0 2.9 20 18-37 9-28 (66)
37 COG3473 Maleate cis-trans isom 36.8 58 0.0013 24.6 3.7 39 3-43 119-157 (238)
38 PF07576 BRAP2: BRCA1-associat 36.7 32 0.0007 22.8 2.2 17 41-57 63-79 (110)
39 PF03698 UPF0180: Uncharacteri 34.4 45 0.00098 21.0 2.4 25 12-37 5-29 (80)
40 PF15323 Ashwin: Developmental 34.0 43 0.00092 25.1 2.6 44 5-53 2-45 (214)
41 KOG2794 Delta-aminolevulinic a 33.7 34 0.00073 26.8 2.1 46 7-54 174-219 (340)
42 PF04015 DUF362: Domain of unk 33.5 1.3E+02 0.0028 21.5 5.1 46 6-51 2-59 (206)
43 cd04882 ACT_Bt0572_2 C-termina 33.2 91 0.002 17.3 3.6 12 18-29 13-24 (65)
44 cd04824 eu_ALAD_PBGS_cysteine_ 31.1 47 0.001 26.3 2.6 47 7-54 157-203 (320)
45 cd06355 PBP1_FmdD_like Peripla 30.6 2.5E+02 0.0054 21.5 7.0 42 3-44 134-176 (348)
46 PRK07455 keto-hydroxyglutarate 30.6 1.9E+02 0.0041 20.7 5.6 47 3-51 13-59 (187)
47 PF13788 DUF4180: Domain of un 30.5 97 0.0021 20.8 3.7 23 14-36 54-76 (113)
48 cd06335 PBP1_ABC_ligand_bindin 29.8 2.5E+02 0.0055 21.4 6.7 39 3-41 139-178 (347)
49 KOG2475 CDC45 (cell division c 29.2 3.7E+02 0.0081 23.1 7.5 96 7-120 31-132 (587)
50 COG0673 MviM Predicted dehydro 28.7 1.8E+02 0.0039 22.1 5.4 61 4-68 70-143 (342)
51 cd04903 ACT_LSD C-terminal ACT 28.6 1.1E+02 0.0024 16.9 3.9 32 5-38 2-33 (71)
52 PF13673 Acetyltransf_10: Acet 28.3 1.5E+02 0.0032 18.3 6.0 44 4-51 68-114 (117)
53 PF12173 BacteriocIIc_cy: Bact 28.2 25 0.00054 22.3 0.5 16 56-71 48-63 (91)
54 COG0362 Gnd 6-phosphogluconate 28.2 1.6E+02 0.0034 24.5 5.1 83 18-103 14-112 (473)
55 cd04880 ACT_AAAH-PDT-like ACT 27.5 1.4E+02 0.003 17.5 3.9 32 6-39 3-34 (75)
56 PF06399 GFRP: GTP cyclohydrol 26.8 84 0.0018 19.9 2.7 21 18-38 52-72 (83)
57 PF07530 PRE_C2HC: Associated 26.8 81 0.0018 19.0 2.6 21 19-39 2-22 (68)
58 PF00490 ALAD: Delta-aminolevu 26.7 8.6 0.00019 30.5 -2.2 46 7-54 163-208 (324)
59 PHA02114 hypothetical protein 26.7 89 0.0019 20.8 2.9 28 11-38 91-118 (127)
60 PRK03094 hypothetical protein; 26.5 77 0.0017 20.0 2.5 25 12-37 5-29 (80)
61 COG3978 Acetolactate synthase 25.5 57 0.0012 20.7 1.7 23 18-40 17-39 (86)
62 cd04905 ACT_CM-PDT C-terminal 24.7 1.6E+02 0.0035 17.5 4.8 34 4-39 3-36 (80)
63 TIGR02990 ectoine_eutA ectoine 24.5 3.1E+02 0.0067 20.6 6.1 46 3-50 121-175 (239)
64 PRK05752 uroporphyrinogen-III 24.4 2.5E+02 0.0055 20.7 5.5 61 19-90 143-203 (255)
65 PRK00194 hypothetical protein; 24.2 1.6E+02 0.0034 17.9 3.7 35 3-39 4-38 (90)
66 PRK15070 propanediol utilizati 23.0 76 0.0017 23.7 2.3 34 30-78 135-168 (211)
67 PF02581 TMP-TENI: Thiamine mo 22.5 2.8E+02 0.0061 19.4 5.9 45 6-50 2-46 (180)
68 cd00550 ArsA_ATPase Oxyanion-t 22.4 1.8E+02 0.0039 21.7 4.3 31 3-33 162-192 (254)
69 PF13076 DUF3940: Protein of u 21.4 64 0.0014 17.3 1.2 32 19-50 4-36 (38)
70 PRK12483 threonine dehydratase 21.4 2.2E+02 0.0047 24.1 5.0 55 19-90 400-463 (521)
71 KOG4132 Uroporphyrinogen III s 21.1 2.1E+02 0.0045 21.9 4.3 74 3-91 4-77 (260)
72 PRK10206 putative oxidoreducta 21.1 2.8E+02 0.0061 21.6 5.3 45 5-53 68-112 (344)
73 PF13740 ACT_6: ACT domain; PD 20.6 1.6E+02 0.0035 17.5 3.1 27 16-42 14-40 (76)
74 CHL00123 rps6 ribosomal protei 20.6 2.3E+02 0.0051 18.0 4.0 36 3-38 9-47 (97)
75 cd04906 ACT_ThrD-I_1 First of 20.5 2.2E+02 0.0047 17.4 4.0 17 18-34 55-71 (85)
76 PF04455 Saccharop_dh_N: LOR/S 20.2 2.5E+02 0.0055 18.4 4.2 36 2-37 2-39 (103)
77 PF11848 DUF3368: Domain of un 20.1 93 0.002 17.2 1.8 16 18-33 21-36 (48)
78 PF03800 Nuf2: Nuf2 family; I 20.0 43 0.00094 22.9 0.5 35 18-52 14-48 (146)
No 1
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.1e-48 Score=271.56 Aligned_cols=121 Identities=40% Similarity=0.612 Sum_probs=118.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
||+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 69999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..|.|+|||++||.+.++|++||||+++
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds~e 121 (137)
T PRK14542 81 VLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDA 121 (137)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCCHH
Confidence 99999999999999999999999999999999999999974
No 2
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.3e-48 Score=265.30 Aligned_cols=122 Identities=52% Similarity=0.888 Sum_probs=120.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+||||++||||++.++++|+|+++++++||+|+++||+++++++|++||.+|+++|||++|++||+|||+++++++|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCcc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSFV 122 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~~ 122 (125)
|+.+|+++|+|||..|.|||||+.||.+..+|.+||||+++.
T Consensus 82 i~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~es 123 (135)
T COG0105 82 ISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPES 123 (135)
T ss_pred HHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHH
Confidence 999999999999999999999999999999999999999874
No 3
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=6.1e-48 Score=268.78 Aligned_cols=121 Identities=36% Similarity=0.605 Sum_probs=118.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|.++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 68999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..|.|+|||++||.+.++|++||||+++
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds~e 121 (140)
T PRK14541 81 VADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAE 121 (140)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCCHH
Confidence 99999999999999999999999999999999999999965
No 4
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=2.1e-47 Score=268.49 Aligned_cols=121 Identities=58% Similarity=0.973 Sum_probs=118.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|.++||++||+++|++||..|.+++||++|++||+|||+++|++.|+||
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..|.|+|||++||.+.++|++||||+++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e 122 (149)
T PTZ00093 82 VKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVE 122 (149)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCHH
Confidence 99999999999999999999999999999999999999975
No 5
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.6e-47 Score=265.39 Aligned_cols=121 Identities=39% Similarity=0.593 Sum_probs=118.4
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+|+
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~na 82 (139)
T PRK14545 3 GNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENA 82 (139)
T ss_pred cceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||+.|.|+|||++||.+.++|++||||+++
T Consensus 83 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds~e 123 (139)
T PRK14545 83 VEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDE 123 (139)
T ss_pred HHHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCCHH
Confidence 99999999999999999999999999999999999999965
No 6
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.6e-47 Score=262.76 Aligned_cols=121 Identities=45% Similarity=0.762 Sum_probs=118.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||+|||+++|++.|+|+
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||+.|.|+|||+.||.+.++|++||||+++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds~~ 122 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKE 122 (134)
T ss_pred HHHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCCHH
Confidence 99999999999999999999999999999999999999975
No 7
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=7.7e-47 Score=260.73 Aligned_cols=118 Identities=32% Similarity=0.544 Sum_probs=115.1
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.+ +|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+|||+++|+|.|+|+|
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 79999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||+||..| .|+|||++||.+.++|++||||+++
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e 121 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVA 121 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHH
Confidence 999999999999887 8999999999999999999999975
No 8
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=2.5e-46 Score=257.95 Aligned_cols=120 Identities=54% Similarity=0.916 Sum_probs=117.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.++++|+||++|.++||.|+++||++|++++|++||.+|.+++||++|++||+|||+++|++.|+|+|
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 78999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||+||+.+.|+|||++||.+.++|++||||+++
T Consensus 81 ~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd~~~ 120 (130)
T cd04413 81 KTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVE 120 (130)
T ss_pred HHHHHHhCCCCccccCCCCchhhhcccccccceECCCCHH
Confidence 9999999999999999999999999999999999999975
No 9
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=2.5e-46 Score=259.08 Aligned_cols=121 Identities=54% Similarity=0.906 Sum_probs=118.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|.+++||++|++||++||+++|++.|+||
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 58999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..+.|+|||++||.+.++|++||||+++
T Consensus 81 v~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sds~~ 121 (134)
T PRK00668 81 IAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPE 121 (134)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccccEECCCCHH
Confidence 99999999999999999999999999999999999999975
No 10
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=9.3e-46 Score=256.26 Aligned_cols=120 Identities=29% Similarity=0.457 Sum_probs=116.9
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCC-CCHHHHHHHhhcCceEEEEEeecCc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSK-PFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~-~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
++||+|||||++.++++|+||++|+++||.|.++||++||+++|++||.++.++ +||++|++||+|||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 689999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..| .|+|||+.||.+.++|++||||+++
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~ 124 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPE 124 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHH
Confidence 9999999999999877 8999999999999999999999865
No 11
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=1.1e-45 Score=255.30 Aligned_cols=118 Identities=25% Similarity=0.387 Sum_probs=115.0
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.+ +|+||++|+++||+|+++||++||+++|++||.+|.+++||+.|++||++||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 79999999999987 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||+||..| .|+|||++||.+.++|++||||+++
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~ 121 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFS 121 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHH
Confidence 999999999999988 8999999999999999999999865
No 12
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=1.4e-45 Score=264.95 Aligned_cols=121 Identities=32% Similarity=0.459 Sum_probs=117.5
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+|+++|+++||+|+++||++||+++|++||.+|.+++||++|++||+|||+++|+|.|+||
T Consensus 29 ~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g~na 108 (177)
T PLN02931 29 EERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEKENA 108 (177)
T ss_pred ceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEecCCH
Confidence 48999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..| .|+|||++||.+.++|++||||+++
T Consensus 109 V~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e 152 (177)
T PLN02931 109 VSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPE 152 (177)
T ss_pred HHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHH
Confidence 9999999999999887 6999999999999999999999964
No 13
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=2.7e-45 Score=253.54 Aligned_cols=120 Identities=38% Similarity=0.652 Sum_probs=116.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||..+.+++||++|+++|++||+++|+|.|+|+|
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 78999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||+||+.| .|+|||++||.+.++|++||||+++
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~ 123 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVE 123 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHH
Confidence 999999999999854 7999999999999999999999975
No 14
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=1.9e-45 Score=272.70 Aligned_cols=121 Identities=60% Similarity=1.033 Sum_probs=118.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||++||+++|++.|+|+
T Consensus 88 ~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~Gena 167 (238)
T PLN02619 88 MERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGEGV 167 (238)
T ss_pred hceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEECCcH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..+.|+|||++||.+.++|++||||+++
T Consensus 168 V~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~E 208 (238)
T PLN02619 168 IKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPE 208 (238)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHH
Confidence 99999999999999999999999999999999999999975
No 15
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=4.1e-45 Score=253.30 Aligned_cols=120 Identities=28% Similarity=0.401 Sum_probs=114.3
Q ss_pred cEEEEEEcCcccccCch-HHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 2 EQTFIMIKPDGVQRGLV-GEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~-g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
|+||+|||||++.+++. |.|++.|+++||.|.++||++||+++|++||.+|.+++||++|++||++||+++|+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 79999999999998765 66777788999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++||+||..| .|+|||++||.+.++|++||||+++
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e 124 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPA 124 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHH
Confidence 9999999999999876 8999999999999999999999975
No 16
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=3.5e-45 Score=261.17 Aligned_cols=121 Identities=38% Similarity=0.645 Sum_probs=116.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHH-----HhcCCCCHHHHHHHhhcCceEEEEE
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE-----DLSSKPFFGSLIEYITSGPVVAMIW 75 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~-----~~~~~~~~~~lv~~~~sgp~~al~l 75 (125)
+|+||+|||||++.++++|+||++|+++||.|.++||++||+++|++||. +|.+++||++|++||+|||+++|++
T Consensus 5 ~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~valvl 84 (169)
T PRK14543 5 IQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVFVV 84 (169)
T ss_pred cceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEEEE
Confidence 48999999999999999999999999999999999999999999999995 7899999999999999999999999
Q ss_pred eecCcchhhhhhhCCCCCCCCCCCCcccccccC----------cCCcEEeccCCCc
Q 033187 76 EGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIV----------TGRLFIKLALLSF 121 (125)
Q Consensus 76 ~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~----------~~~N~vh~s~~~~ 121 (125)
.|+|||++||+++||+||..|.|+|||+.||.+ .++|++||||+++
T Consensus 85 ~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~e 140 (169)
T PRK14543 85 EGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANED 140 (169)
T ss_pred ECCCHHHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCCCHH
Confidence 999999999999999999999999999999986 7899999999975
No 17
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=4e-45 Score=252.47 Aligned_cols=119 Identities=26% Similarity=0.458 Sum_probs=115.6
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.+ ++|+|+++|.++||.|.++||++||+++|++||..|.+++||++|++||+|||+++|+|.|+|+|
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 79999999999977 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||+||..| .|+|||++||.+.++|++||||+++
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~ 122 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAE 122 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHH
Confidence 999999999999887 8999999999999999999999975
No 18
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=3e-45 Score=253.68 Aligned_cols=121 Identities=37% Similarity=0.645 Sum_probs=110.5
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.++++|+||++|.++||.|+++||++|++++|++||..+.++++|+.+++||++|||++|++.|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCcc
Q 033187 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSFV 122 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~~ 122 (125)
++||+++||+||+.|.|+|||++||.+..+|++||||+++-
T Consensus 81 ~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~sd~~~~ 121 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGSDSPED 121 (135)
T ss_dssp HHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-SSHHH
T ss_pred HHHHHhcCCcchhhhccccchhceeecCCCCeEECCCCHHH
Confidence 99999999999999999999999999999999999999763
No 19
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=7e-44 Score=246.87 Aligned_cols=120 Identities=50% Similarity=0.860 Sum_probs=117.2
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.++++|+||++|.++||.|+++||++||+++|++||..+.++++|++|+++|++||+++|+|.|+|+|
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 79999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
++||+++||++|..+.|+|||++||.+.++|++||||+++
T Consensus 81 ~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd~~~ 120 (135)
T smart00562 81 KTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPE 120 (135)
T ss_pred HHHHHHhCCCChhhcCCcchHHhhcccccceeEECCCCHH
Confidence 9999999999998889999999999999999999999974
No 20
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.9e-42 Score=249.52 Aligned_cols=121 Identities=39% Similarity=0.672 Sum_probs=115.2
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHh----------------------------
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL---------------------------- 52 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~---------------------------- 52 (125)
.|+||+|||||++.++++|+||++|.++||.|+++||+++|+++|++||..+
T Consensus 3 ~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 82 (183)
T PRK14544 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGT 82 (183)
T ss_pred cceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccccc
Confidence 4899999999999988999999999999999999999999999999999954
Q ss_pred -----cCCCCHHHHHHHhhcCceEEEEEeecCcchhhhhhhCCCCCCCCCCCCcccccccCc----------CCcEEecc
Q 033187 53 -----SSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVT----------GRLFIKLA 117 (125)
Q Consensus 53 -----~~~~~~~~lv~~~~sgp~~al~l~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~~----------~~N~vh~s 117 (125)
.+++||++|++||+||||++|++.|+|||++||+++||++|..|.|+|||+.||.+. ++|++|||
T Consensus 83 ~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~~NavH~S 162 (183)
T PRK14544 83 DDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHAS 162 (183)
T ss_pred ccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccccccccccccceeeEEECC
Confidence 678999999999999999999999999999999999999999999999999999873 79999999
Q ss_pred CCCc
Q 033187 118 LLSF 121 (125)
Q Consensus 118 ~~~~ 121 (125)
|+++
T Consensus 163 ds~e 166 (183)
T PRK14544 163 DSPE 166 (183)
T ss_pred CCHH
Confidence 9975
No 21
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.8e-41 Score=237.13 Aligned_cols=121 Identities=55% Similarity=0.933 Sum_probs=117.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||++||||++.+|++|+||.++.++||.|++.|++.++++++++||.++++++||+.|+.||+|||++||+++|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||+|+.| .|+|||+.||.+.++|++||||+.+
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~ 128 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVE 128 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHH
Confidence 9999999999999887 9999999999999999999999864
No 22
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=84.33 E-value=0.6 Score=28.40 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=30.4
Q ss_pred ccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcchhhhhhhC
Q 033187 39 TVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIG 89 (125)
Q Consensus 39 ~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav~~~r~l~G 89 (125)
.|++++++.||+.. |++|...--.||.+ .|+..+=.+++-+|
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v----~~~~~vY~f~~~~G 64 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV----KGDVAVYTFRRAVG 64 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE----eCCEEEEEEEeccc
Confidence 58999999999876 78887766677754 56666555555554
No 23
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=78.49 E-value=0.67 Score=28.22 Aligned_cols=43 Identities=23% Similarity=0.325 Sum_probs=30.4
Q ss_pred eccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcchhhhhhhC
Q 033187 38 MTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIG 89 (125)
Q Consensus 38 ~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav~~~r~l~G 89 (125)
-.|++++++.||+.. |++|..---+||.+ .++.++=+++..+|
T Consensus 21 p~~spe~V~dfYs~~-----YPeLttA~v~gP~~----~~~~~~Y~F~~~~G 63 (66)
T TIGR03738 21 PAMSPEQVRDFYSAQ-----YPELLNAEVEGPVV----KGGVQTYTFRRAVG 63 (66)
T ss_pred CCCCHHHHHHHHhcc-----CchheeeeeeCCeE----eCCEEEEEEEEeec
Confidence 467999999999875 78876665567754 55556655666555
No 24
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.88 E-value=10 Score=27.30 Aligned_cols=48 Identities=15% Similarity=0.227 Sum_probs=39.0
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (125)
..++++++|..+.. .-+|.+.|.+....+.++.. |++++|+++--...
T Consensus 73 ~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvinl~~--m~~~qArRivDFla 120 (167)
T COG1799 73 SSKIVLLEPRKYED--AQEIADYLKNRKAVVINLQR--MDPAQARRIVDFLA 120 (167)
T ss_pred ceEEEEecCccHHH--HHHHHHHHhcCceEEEEeee--CCHHHHHHHHHHhc
Confidence 36899999999987 67999999998888888766 58999988754333
No 25
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=63.12 E-value=23 Score=28.09 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=62.6
Q ss_pred CchHHHHHHHHHcCCeEEEEEEeccCHHHH-------HHHHHHhcCCC----------CHH----HHHHHhhcCceEEEE
Q 033187 16 GLVGEIIIRFEKKGFSLKGLKLMTVDRPFA-------EKHYEDLSSKP----------FFG----SLIEYITSGPVVAMI 74 (125)
Q Consensus 16 ~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a-------~~~y~~~~~~~----------~~~----~lv~~~~sgp~~al~ 74 (125)
|-.|.|++.|....++-.++||+.|++.+- ++.|.-++.-| -++ ++.+++..-|+-.++
T Consensus 151 GtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilv 230 (400)
T KOG0328|consen 151 GTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILV 230 (400)
T ss_pred CCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEE
Confidence 446999999999999999999999998773 34454443221 122 234444556777776
Q ss_pred EeecCcchhhhhhhCCCCCCCCCCCCcccccccC-cCCcEEecc
Q 033187 75 WEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIV-TGRLFIKLA 117 (125)
Q Consensus 75 l~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~-~~~N~vh~s 117 (125)
=..+-..+-.+++.=..+-+++.-.+|...|+.- ..+-.+.|+
T Consensus 231 krdeltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcn 274 (400)
T KOG0328|consen 231 KRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCN 274 (400)
T ss_pred ecCCCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEec
Confidence 5555455555555444445555566666666652 333344443
No 26
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=62.25 E-value=24 Score=21.36 Aligned_cols=44 Identities=16% Similarity=0.284 Sum_probs=29.1
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHh
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL 52 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~ 52 (125)
.++++|..+.. +.+|.+.|.+....|.++ -.|+.++++++....
T Consensus 1 I~v~~p~~~~D--~~~i~~~l~~g~~Vivnl--~~l~~~~~~Ri~Dfl 44 (73)
T PF04472_consen 1 IVVFEPKSFED--AREIVDALREGKIVIVNL--ENLDDEEAQRILDFL 44 (73)
T ss_dssp -EEEE-SSGGG--HHHHHHHHHTT--EEEE---TTS-HHHHHHHHHHH
T ss_pred CEEEeeCCHHH--HHHHHHHHHcCCEEEEEC--CCCCHHHHHHHHHHH
Confidence 36889999987 789999999887777666 456788777765433
No 27
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=60.78 E-value=9.3 Score=30.27 Aligned_cols=46 Identities=22% Similarity=0.514 Sum_probs=39.6
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (125)
+|-|..+-.|++|.|-+.|.++||. .+-.+.-+..-+..||...++
T Consensus 161 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 206 (323)
T PRK09283 161 IVAPSDMMDGRVGAIREALDEAGFT--DVPIMSYSAKYASAFYGPFRD 206 (323)
T ss_pred EEEcccccccHHHHHHHHHHHCCCC--CCceeecHHHHHHhhhHHHHH
Confidence 5678888888999999999999994 577888899999999987664
No 28
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=59.99 E-value=7.2 Score=30.74 Aligned_cols=46 Identities=20% Similarity=0.460 Sum_probs=39.3
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (125)
+|-|..+-.|+++.|-+.|.++|| .++-.+..+..-|..||...++
T Consensus 153 iVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImsYsaKyaSafYGPFRd 198 (314)
T cd00384 153 IVAPSDMMDGRVAAIREALDEAGF--SDVPIMSYSAKYASAFYGPFRD 198 (314)
T ss_pred eeecccccccHHHHHHHHHHHCCC--CCCceeecHHHhhhhccchHHH
Confidence 567888888999999999999999 5677888899999999987654
No 29
>PF04339 DUF482: Protein of unknown function, DUF482; InterPro: IPR007434 This family contains several proteins of uncharacterised function.
Probab=57.52 E-value=20 Score=28.90 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=40.3
Q ss_pred HHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC------------CCCHHHHHHHhhcCceEEEEEeecCcch
Q 033187 23 IRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS------------KPFFGSLIEYITSGPVVAMIWEGEGVVK 82 (125)
Q Consensus 23 ~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~------------~~~~~~lv~~~~sgp~~al~l~g~nav~ 82 (125)
+.+.+.|+++....--.+++++...+|..+.. +.||..+.+-|...-++++...+...|.
T Consensus 193 r~v~~~Gi~~~~l~G~~i~~~~~~~f~~~Y~~Ty~k~~~~~yLt~~FF~~l~~~m~~~~~l~~A~~~g~~Va 264 (370)
T PF04339_consen 193 RKVAEQGIRIRTLTGDEITDEDWDRFYRLYQNTYAKRWGRPYLTREFFEQLAETMPEQVVLVVARRDGQPVA 264 (370)
T ss_pred HHHHHcCCEEEEEeCCCCCHHHHHHHHHHHHHHHHhhCCChhhcHHHHHHHHHhCcCCEEEEEEEECCeEEE
Confidence 44567899999999888999987776664432 2467777777776655555444443443
No 30
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=55.41 E-value=11 Score=29.92 Aligned_cols=46 Identities=22% Similarity=0.447 Sum_probs=38.9
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (125)
+|-|..+-.|+++.|-+.|.++||. ++-.+..+..-+..||...++
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 208 (322)
T PRK13384 163 MLAPSAMMDGQVKAIRQGLDAAGFE--HVAILAHSAKFASSFYGPFRA 208 (322)
T ss_pred eEecccccccHHHHHHHHHHHCCCC--CCceeehhHhhhhhhcchHHH
Confidence 5678888889999999999999994 577888889999999987653
No 31
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=53.56 E-value=9.9 Score=30.06 Aligned_cols=46 Identities=17% Similarity=0.503 Sum_probs=39.2
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (125)
+|-|..+-.|+++.|-+.|.++||. .+-.+..+...|..||...++
T Consensus 158 iVAPSdMMDGrV~aIR~aLd~~g~~--~v~ImSYsaKyaS~fYGPFRd 203 (320)
T cd04823 158 IVAPSDMMDGRIGAIREALDAEGFT--NVSILSYAAKYASAFYGPFRD 203 (320)
T ss_pred EEEcccchhhHHHHHHHHHHHCCCC--CCceeechHHhhhhccchhHH
Confidence 5678888888999999999999994 577888899999999987664
No 32
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=46.79 E-value=20 Score=28.35 Aligned_cols=46 Identities=22% Similarity=0.491 Sum_probs=38.2
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (125)
+|-|..+-.|+++.|-+.|.++||. ++..+..+..-|..||...++
T Consensus 166 ivAPSdMMDGrV~aIR~aLd~ag~~--~v~IMsYsaKyASafYGPFRd 211 (330)
T COG0113 166 IVAPSDMMDGRVGAIREALDEAGFI--DVPIMSYSAKYASAFYGPFRD 211 (330)
T ss_pred eecccccccchHHHHHHHHHHcCCC--cceeeehhHHHhhhccccHHH
Confidence 6789988889999999999999986 445677788888999887654
No 33
>PF06130 PduL: Propanediol utilisation protein PduL; InterPro: IPR008300 Salmonella enterica subsp. enterica serovar Typhimurium degrades 1,2-propanediol by a pathway that requires coenzyme B12, adenosylcobalamin (AdoCbl). Proteins required for 1,2-propanediol degradation are encoded by the pdu operon []. PduL functions in this pathway, but its exact role is not yet determined. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilization of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilization (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and coregulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR010254 from INTERPRO and IPR009204 from INTERPRO for more details on the propanediol utilization pathway and the pdu operon.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=41.21 E-value=23 Score=21.75 Aligned_cols=20 Identities=15% Similarity=0.172 Sum_probs=17.6
Q ss_pred eEEEEEEeccCHHHHHHHHH
Q 033187 31 SLKGLKLMTVDRPFAEKHYE 50 (125)
Q Consensus 31 ~I~~~k~~~l~~~~a~~~y~ 50 (125)
.|+..+.++|++++|+.|+-
T Consensus 4 viva~RHIHms~~da~~l~~ 23 (71)
T PF06130_consen 4 VIVAARHIHMSPEDAEKLFG 23 (71)
T ss_pred EEEEccccCCCHHHHHHhCC
Confidence 47888999999999999975
No 34
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.65 E-value=1.1e+02 Score=20.73 Aligned_cols=42 Identities=19% Similarity=0.267 Sum_probs=26.1
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHH
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKH 48 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~ 48 (125)
++-+++|....|. .-+-..|+.+||++....... +++++.+-
T Consensus 7 ~a~~g~D~Hd~g~-~iv~~~l~~~GfeVi~lg~~~-s~e~~v~a 48 (132)
T TIGR00640 7 VAKMGQDGHDRGA-KVIATAYADLGFDVDVGPLFQ-TPEEIARQ 48 (132)
T ss_pred EEeeCCCccHHHH-HHHHHHHHhCCcEEEECCCCC-CHHHHHHH
Confidence 4456666655431 223445688999999998874 55554443
No 35
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=40.11 E-value=87 Score=19.82 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=35.8
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (125)
+++--|+.. ..+++..+.+.|..|..-|-+.++.+++++++...+
T Consensus 66 V~I~tp~~~----h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~ 110 (120)
T PF01408_consen 66 VIIATPPSS----HAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAK 110 (120)
T ss_dssp EEEESSGGG----HHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEecCCcc----hHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHH
Confidence 445555543 258888899999999999999999999999987543
No 36
>COG1724 Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only]
Probab=37.55 E-value=53 Score=19.98 Aligned_cols=20 Identities=40% Similarity=0.478 Sum_probs=17.4
Q ss_pred hHHHHHHHHHcCCeEEEEEE
Q 033187 18 VGEIIIRFEKKGFSLKGLKL 37 (125)
Q Consensus 18 ~g~Ii~~i~~~gf~I~~~k~ 37 (125)
..+++..|+..||..++.|=
T Consensus 9 ~ke~ik~Le~~Gf~~vrqkG 28 (66)
T COG1724 9 AKEVIKALEKDGFQLVRQKG 28 (66)
T ss_pred HHHHHHHHHhCCcEEEEeec
Confidence 46899999999999998874
No 37
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=36.80 E-value=58 Score=24.58 Aligned_cols=39 Identities=18% Similarity=0.206 Sum_probs=29.9
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHH
Q 033187 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRP 43 (125)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~ 43 (125)
+.+.++-|....-. ...++.|..+||+|+..+-+-++..
T Consensus 119 ~ri~vlTPY~~evn--~~e~ef~~~~Gfeiv~~~~Lgi~dn 157 (238)
T COG3473 119 QRISVLTPYIDEVN--QREIEFLEANGFEIVDFKGLGITDN 157 (238)
T ss_pred ceEEEeccchhhhh--hHHHHHHHhCCeEEEEeeccCCccc
Confidence 45788888876542 4678899999999999987766544
No 38
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=36.75 E-value=32 Score=22.85 Aligned_cols=17 Identities=41% Similarity=0.868 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHhcCCCC
Q 033187 41 DRPFAEKHYEDLSSKPF 57 (125)
Q Consensus 41 ~~~~a~~~y~~~~~~~~ 57 (125)
+.+.|.+||..++|++|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 67789999999999987
No 39
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=34.39 E-value=45 Score=20.98 Aligned_cols=25 Identities=20% Similarity=0.461 Sum_probs=20.5
Q ss_pred ccccCchHHHHHHHHHcCCeEEEEEE
Q 033187 12 GVQRGLVGEIIIRFEKKGFSLKGLKL 37 (125)
Q Consensus 12 a~~~~~~g~Ii~~i~~~gf~I~~~k~ 37 (125)
|+..+ +..|-+.|+++||+++.++.
T Consensus 5 AVE~~-Ls~v~~~L~~~GyeVv~l~~ 29 (80)
T PF03698_consen 5 AVEEG-LSNVKEALREKGYEVVDLEN 29 (80)
T ss_pred EecCC-chHHHHHHHHCCCEEEecCC
Confidence 45666 46899999999999998873
No 40
>PF15323 Ashwin: Developmental protein
Probab=33.99 E-value=43 Score=25.07 Aligned_cols=44 Identities=9% Similarity=0.256 Sum_probs=35.8
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (125)
..++.|+-+.. ..++..|.+.++.+.. ...++.++..++|..|.
T Consensus 2 ~~LlhPElLS~---~~Ll~iL~~r~I~~~~--~~~~~kd~L~~Ly~q~~ 45 (214)
T PF15323_consen 2 ELLLHPELLSR---EFLLLILRQRNIDVEN--DEKLDKDELTELYVQHA 45 (214)
T ss_pred ccccChhhcCH---HHHHHHHHHcCcCccc--hhhcCHHHHHHHHHHHh
Confidence 35788998875 6788888999999988 66789999999998654
No 41
>KOG2794 consensus Delta-aminolevulinic acid dehydratase [Coenzyme transport and metabolism]
Probab=33.73 E-value=34 Score=26.81 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=38.2
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (125)
++-|..+-.|++|.|-+.|...||. ++-.+..+...+..||...++
T Consensus 174 vVapSDmmDgRV~aIk~aL~~~~l~--~vsvmSYsaKfas~fyGpFR~ 219 (340)
T KOG2794|consen 174 VVAPSDMMDGRVGAIKQALDAEGLQ--KVSVMSYSAKFASSFYGPFRE 219 (340)
T ss_pred eecchHhhcchHHHHHHHHHHhccc--ceEEEeehhhhhhccccchHH
Confidence 4567767778899999999999999 888888899999999876553
No 42
>PF04015 DUF362: Domain of unknown function (DUF362) ; InterPro: IPR007160 This domain is found in some iron-sulphur proteins.
Probab=33.55 E-value=1.3e+02 Score=21.47 Aligned_cols=46 Identities=15% Similarity=0.241 Sum_probs=27.7
Q ss_pred EEEcCcccccC-----------chHHHHHHHHHcCCe-EEEEEEeccCHHHHHHHHHH
Q 033187 6 IMIKPDGVQRG-----------LVGEIIIRFEKKGFS-LKGLKLMTVDRPFAEKHYED 51 (125)
Q Consensus 6 ~lIKPda~~~~-----------~~g~Ii~~i~~~gf~-I~~~k~~~l~~~~a~~~y~~ 51 (125)
|+|||+..... .+..+++.+.+.|.. |.=...-.......++.+..
T Consensus 2 V~IKpN~~~~~~~~~~~~T~P~vv~avv~~l~~~g~~~i~i~e~~~~~~~~~~~~~~~ 59 (206)
T PF04015_consen 2 VLIKPNFVNPGPPESGATTHPEVVRAVVEMLKEAGAKEIIIAESPGSGAADTREVFKR 59 (206)
T ss_pred EEEEeCCCCCCCCCCCccCCHHHHHHHHHHHHHcCCCceEEEeCCCcchHhHHHHHHH
Confidence 68999876432 367899999999986 33333332222445555443
No 43
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.25 E-value=91 Score=17.29 Aligned_cols=12 Identities=25% Similarity=0.493 Sum_probs=5.4
Q ss_pred hHHHHHHHHHcC
Q 033187 18 VGEIIIRFEKKG 29 (125)
Q Consensus 18 ~g~Ii~~i~~~g 29 (125)
+.++++.|.++|
T Consensus 13 L~~i~~~l~~~~ 24 (65)
T cd04882 13 LHEILQILSEEG 24 (65)
T ss_pred HHHHHHHHHHCC
Confidence 344444444443
No 44
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=31.15 E-value=47 Score=26.34 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=35.8
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (125)
+|=|..+-.|+++.|-+.|.++||.- ++-.+.-+..-+..||...++
T Consensus 157 iVAPSdMMDGrV~aIR~aLD~~G~~~-~v~ImSYsaKyaS~fYGPFRd 203 (320)
T cd04824 157 IVAPSDMMDGRVRAIKQALIQAGLGN-KVSVMSYSAKFASCLYGPFRD 203 (320)
T ss_pred EEecccccccHHHHHHHHHHHCCCcc-CCeeeehHHHhhhhccchHHH
Confidence 56788888899999999999999921 223456678888888876653
No 45
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=30.62 E-value=2.5e+02 Score=21.53 Aligned_cols=42 Identities=14% Similarity=0.171 Sum_probs=26.4
Q ss_pred EEEEEEcCcc-cccCchHHHHHHHHHcCCeEEEEEEeccCHHH
Q 033187 3 QTFIMIKPDG-VQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPF 44 (125)
Q Consensus 3 ~tl~lIKPda-~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~ 44 (125)
+++++|-+|. +-......+.+.+++.|++|+..........+
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D 176 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTD 176 (348)
T ss_pred CeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhh
Confidence 5677887773 33333344556678889999887666554443
No 46
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.62 E-value=1.9e+02 Score=20.65 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=36.1
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHH
Q 033187 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYED 51 (125)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~ 51 (125)
+-+.+|....... .-++++.+.+.|+++.+.++...+..+..+....
T Consensus 13 ~~~~v~r~~~~~~--~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~ 59 (187)
T PRK07455 13 RAIAVIRAPDLEL--GLQMAEAVAAGGMRLIEITWNSDQPAELISQLRE 59 (187)
T ss_pred CEEEEEEcCCHHH--HHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHH
Confidence 5577888776665 5678999999999999999988887775544433
No 47
>PF13788 DUF4180: Domain of unknown function (DUF4180)
Probab=30.46 E-value=97 Score=20.79 Aligned_cols=23 Identities=30% Similarity=0.486 Sum_probs=17.7
Q ss_pred ccCchHHHHHHHHHcCCeEEEEE
Q 033187 14 QRGLVGEIIIRFEKKGFSLKGLK 36 (125)
Q Consensus 14 ~~~~~g~Ii~~i~~~gf~I~~~k 36 (125)
+.|..|+|++++...++++.-+-
T Consensus 54 ~TglAGeiLQKf~NY~iklAivG 76 (113)
T PF13788_consen 54 RTGLAGEILQKFVNYRIKLAIVG 76 (113)
T ss_pred hcchHHHHHHHHHhhceeEEEEE
Confidence 45778999999988887776663
No 48
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.76 E-value=2.5e+02 Score=21.38 Aligned_cols=39 Identities=5% Similarity=0.131 Sum_probs=26.1
Q ss_pred EEEEEEcCcc-cccCchHHHHHHHHHcCCeEEEEEEeccC
Q 033187 3 QTFIMIKPDG-VQRGLVGEIIIRFEKKGFSLKGLKLMTVD 41 (125)
Q Consensus 3 ~tl~lIKPda-~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~ 41 (125)
+.++++-++. +-......+.+.+.+.|+++.....+..+
T Consensus 139 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~ 178 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWG 178 (347)
T ss_pred CeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCC
Confidence 3566676663 43344567778888889998877666544
No 49
>KOG2475 consensus CDC45 (cell division cycle 45)-like protein [Replication, recombination and repair]
Probab=29.19 E-value=3.7e+02 Score=23.12 Aligned_cols=96 Identities=10% Similarity=0.016 Sum_probs=63.5
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcchhhhh
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRT 86 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav~~~r~ 86 (125)
=+-+||++ .-+||+.|.+..+---...-+ ..-.+.++.|.++.+ ++.-++|.+=.+...+..
T Consensus 31 s~DiDALC---A~kiLt~Llk~D~iqysivPV-sG~~elek~~~e~~e--------------~~~~iiLiNcG~~vDL~~ 92 (587)
T KOG2475|consen 31 SLDIDALC---ATKILTHLLKCDHIQYSIVPV-SGWSELEKAFLELQE--------------QIKYIILINCGATVDLTR 92 (587)
T ss_pred ecChhHHH---HHHHHHHHHhccccceeEEEe-cchHHHHHHHHhhcc--------------CceEEEEecCCcchhHHH
Confidence 35678888 469999998887654444444 356677777877753 455566666677778888
Q ss_pred hhCC-CCCC-----CCCCCCcccccccCcCCcEEeccCCC
Q 033187 87 IIGA-TNPA-----QSAPGTIRGDLAIVTGRLFIKLALLS 120 (125)
Q Consensus 87 l~Gp-~~p~-----~a~p~slR~~~g~~~~~N~vh~s~~~ 120 (125)
+.-| .+-. .-+|-.|-..|+.+.+.=..||+++.
T Consensus 93 ~L~~P~e~~~fViDSHRP~nl~Niy~~~qi~~l~d~d~ee 132 (587)
T KOG2475|consen 93 LLQPPSEDVIFVIDSHRPFNLENIYEDNQIHLLDDGDDEE 132 (587)
T ss_pred HhCCcccceEEEEeCCCCcchhhcccCceEEEecCCChhh
Confidence 8875 2220 12788888888877665556666543
No 50
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=28.66 E-value=1.8e+02 Score=22.08 Aligned_cols=61 Identities=21% Similarity=0.234 Sum_probs=44.5
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCC-------------CCHHHHHHHhhcC
Q 033187 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSK-------------PFFGSLIEYITSG 68 (125)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~-------------~~~~~lv~~~~sg 68 (125)
.+.|--|+... .++.....++|-.|..-|-+.+|.++++++...-+.. |.+..+.+.+.+|
T Consensus 70 ~V~Iatp~~~H----~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g 143 (342)
T COG0673 70 AVYIATPNALH----AELALAALEAGKHVLCEKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDSG 143 (342)
T ss_pred EEEEcCCChhh----HHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcC
Confidence 35566676654 4677788899999999999999999999887754331 3345566667765
No 51
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=28.58 E-value=1.1e+02 Score=16.90 Aligned_cols=32 Identities=9% Similarity=0.310 Sum_probs=23.2
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEe
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLM 38 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~ 38 (125)
+.+.-+|. .|.+++|.+.|.++|..|..+...
T Consensus 2 l~i~~~d~--~g~l~~i~~~l~~~~~~I~~~~~~ 33 (71)
T cd04903 2 LIVVHKDK--PGAIAKVTSVLADHEINIAFMRVS 33 (71)
T ss_pred EEEEeCCC--CChHHHHHHHHHHcCcCeeeeEEE
Confidence 44555553 345789999999999999887653
No 52
>PF13673 Acetyltransf_10: Acetyltransferase (GNAT) domain; PDB: 2FIW_A 1BOB_A 3FNC_B 3EXN_A.
Probab=28.29 E-value=1.5e+02 Score=18.25 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=28.7
Q ss_pred EEEEEcCcccccCchHHHHHHHHHc---CCeEEEEEEeccCHHHHHHHHHH
Q 033187 4 TFIMIKPDGVQRGLVGEIIIRFEKK---GFSLKGLKLMTVDRPFAEKHYED 51 (125)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~---gf~I~~~k~~~l~~~~a~~~y~~ 51 (125)
..+.+.|+.-.+|.-..+++.+.+. |+....+. +...+..||..
T Consensus 68 ~~l~v~p~~r~~Gig~~Ll~~~~~~~~~~~~~l~~~----~~~~a~~~y~~ 114 (117)
T PF13673_consen 68 SHLYVLPEYRGRGIGRALLDAAEKEAKDGIRRLTVE----ANERARRFYRK 114 (117)
T ss_dssp EEEEE-GGGTTSSHHHHHHHHHHHHHTTTCEEEEEE----C-HHHHHHHHH
T ss_pred EEEEEChhhcCCcHHHHHHHHHHHHHHcCCcEEEEE----eCHHHHHHHHh
Confidence 4577888887777544556555432 88877777 77778888865
No 53
>PF12173 BacteriocIIc_cy: Bacteriocin class IIc cyclic gassericin A-like; InterPro: IPR020970 This class of bacteriocins was previously described as class V. The members include gassericin A, acidocin B and butyrovibriocin AR10, all of which are hydrophobic cyclical structures []. The N- and C-termini are covalently linked, and the circular molecule is resistant to several proteases and peptidases []. The immunity protein that protects Lactobacillus gasseri from the toxic effects of its bacteriocin, gassericin A, has been identified. It is found to be a small positively-charged hydrophobic peptide of 53 amino acids containing a putative transmembrane segment [] - a structure unlike that of the more common immunity proteins as found in PF08951 from PFAM.
Probab=28.20 E-value=25 Score=22.33 Aligned_cols=16 Identities=6% Similarity=0.642 Sum_probs=13.5
Q ss_pred CCHHHHHHHhhcCceE
Q 033187 56 PFFGSLIEYITSGPVV 71 (125)
Q Consensus 56 ~~~~~lv~~~~sgp~~ 71 (125)
..|+++++||++|.++
T Consensus 48 gwyqdivd~vsaGgsl 63 (91)
T PF12173_consen 48 GWYQDIVDWVSAGGSL 63 (91)
T ss_pred HHHHHHHHHHHcCchH
Confidence 4689999999999754
No 54
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=28.18 E-value=1.6e+02 Score=24.54 Aligned_cols=83 Identities=13% Similarity=0.268 Sum_probs=56.8
Q ss_pred hHH-HHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc-CC---C--CHHHHHHHhhc-CceEEEEEeec---Ccchhhhh
Q 033187 18 VGE-IIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS-SK---P--FFGSLIEYITS-GPVVAMIWEGE---GVVKTGRT 86 (125)
Q Consensus 18 ~g~-Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~-~~---~--~~~~lv~~~~s-gp~~al~l~g~---nav~~~r~ 86 (125)
||. +.--+.++||+|.---. |++-.++|+.++. ++ + ..+++++.+.. -+++.|+-.|. ..++.+.-
T Consensus 14 MG~NLaLNi~~~G~~VavyNR---t~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~L~p 90 (473)
T COG0362 14 MGSNLALNIADHGYTVAVYNR---TTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQLLP 90 (473)
T ss_pred hhHHHHHHHHhcCceEEEEeC---CHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHHHHh
Confidence 454 44457899999986654 7888899998876 32 2 34567766655 23677777774 46778888
Q ss_pred hhCCCCCCC----C-CCCCccc
Q 033187 87 IIGATNPAQ----S-APGTIRG 103 (125)
Q Consensus 87 l~Gp~~p~~----a-~p~slR~ 103 (125)
++.+.|.-. + .++|+|.
T Consensus 91 ~Le~gDIiIDGGNs~y~DT~RR 112 (473)
T COG0362 91 LLEKGDIIIDGGNSHYKDTIRR 112 (473)
T ss_pred hcCCCCEEEeCCCcCCchHHHH
Confidence 888877532 2 6888875
No 55
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=27.47 E-value=1.4e+02 Score=17.51 Aligned_cols=32 Identities=13% Similarity=0.340 Sum_probs=23.7
Q ss_pred EEEcCcccccCchHHHHHHHHHcCCeEEEEEEec
Q 033187 6 IMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT 39 (125)
Q Consensus 6 ~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~ 39 (125)
++.-|| ..|.+.+|++.+.++|..|..+....
T Consensus 3 ~~~l~d--~pG~L~~vL~~f~~~~vni~~I~Srp 34 (75)
T cd04880 3 VFSLKN--KPGALAKALKVFAERGINLTKIESRP 34 (75)
T ss_pred EEEeCC--cCCHHHHHHHHHHHCCCCEEEEEeee
Confidence 333355 34557899999999999999996654
No 56
>PF06399 GFRP: GTP cyclohydrolase I feedback regulatory protein (GFRP); InterPro: IPR009112 GTP cyclohydrolase I feedback regulatory protein (GFRP) in mammals helps regulate the biosynthesis of tetrahydrobiopterin through the feedback inhibition of the rate-limiting enzyme GTP cyclohydrolase I (GTPCHI). Tetrahydrobiopterin is the cofactor required for the hydroxylation of aromatic amino acids. The crystal structure of GFRP reveals that the protein forms a homopentamer []. In the presence of phenylalanine, the stimulatory complex consists of a GTPCHI decamer sandwiched by two GFRP pentamers, which is thought to enhance GTPCHI activity by locking the enzyme in the active state []. The structure of GFRP consists of two alpha/beta layers arranged beta(2)-alpha-beta(2)-alpha-beta(2), with antiparallel beta-sheets in the order 342165.; GO: 0009890 negative regulation of biosynthetic process; PDB: 1IS7_N 1IS8_Q 1WPL_T 1JG5_C.
Probab=26.83 E-value=84 Score=19.92 Aligned_cols=21 Identities=14% Similarity=0.333 Sum_probs=17.8
Q ss_pred hHHHHHHHHHcCCeEEEEEEe
Q 033187 18 VGEIIIRFEKKGFSLKGLKLM 38 (125)
Q Consensus 18 ~g~Ii~~i~~~gf~I~~~k~~ 38 (125)
-..+|++|+..||+++.+.-+
T Consensus 52 Pr~VLnKLE~~G~kVvsmtgv 72 (83)
T PF06399_consen 52 PRVVLNKLEKMGYKVVSMTGV 72 (83)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred hHHHHHHHHhcCeEEEEEecc
Confidence 357999999999999988654
No 57
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=26.77 E-value=81 Score=18.98 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=17.8
Q ss_pred HHHHHHHHHcCCeEEEEEEec
Q 033187 19 GEIIIRFEKKGFSLKGLKLMT 39 (125)
Q Consensus 19 g~Ii~~i~~~gf~I~~~k~~~ 39 (125)
..|.+.|++.||.+..+.-++
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~ 22 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMH 22 (68)
T ss_pred HHHHHHHHHcCCceEEEEccc
Confidence 378999999999999887664
No 58
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=26.68 E-value=8.6 Score=30.45 Aligned_cols=46 Identities=22% Similarity=0.504 Sum_probs=33.0
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (125)
+|=|..+-.|+++.|-+.|.++|| .++..+..+..-+..||...++
T Consensus 163 iVAPSdMMDGrV~aIR~aLd~~g~--~~v~ImSYsaKyaS~fYGPFRd 208 (324)
T PF00490_consen 163 IVAPSDMMDGRVGAIREALDEAGF--SDVPIMSYSAKYASAFYGPFRD 208 (324)
T ss_dssp EEEE-S--TTHHHHHHHHHHHTTC--TTSEEEEEEEEB-SSTGHHHHH
T ss_pred eeccccccCCHHHHHHHHHHhCCC--CCccEEechHHHhhhhhHhHHH
Confidence 466887878899999999999999 4666677777778888875543
No 59
>PHA02114 hypothetical protein
Probab=26.66 E-value=89 Score=20.77 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=21.4
Q ss_pred cccccCchHHHHHHHHHcCCeEEEEEEe
Q 033187 11 DGVQRGLVGEIIIRFEKKGFSLKGLKLM 38 (125)
Q Consensus 11 da~~~~~~g~Ii~~i~~~gf~I~~~k~~ 38 (125)
-++.++--=+++.+|++.||.+++.+.+
T Consensus 91 ~amsr~pwi~v~s~le~~g~~vvatqel 118 (127)
T PHA02114 91 YAMSRAPWIKVISRLEEAGFNVVATQEL 118 (127)
T ss_pred hhhccCcHHHHHHHHHhcCceeeehhhh
Confidence 3556554457899999999999988664
No 60
>PRK03094 hypothetical protein; Provisional
Probab=26.46 E-value=77 Score=19.97 Aligned_cols=25 Identities=20% Similarity=0.523 Sum_probs=19.8
Q ss_pred ccccCchHHHHHHHHHcCCeEEEEEE
Q 033187 12 GVQRGLVGEIIIRFEKKGFSLKGLKL 37 (125)
Q Consensus 12 a~~~~~~g~Ii~~i~~~gf~I~~~k~ 37 (125)
|+..+ +..|-+.|+++|++++.++.
T Consensus 5 aVE~~-Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 5 GVEQS-LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred EeecC-cHHHHHHHHHCCCEEEecCc
Confidence 45565 36788999999999998864
No 61
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=25.54 E-value=57 Score=20.72 Aligned_cols=23 Identities=9% Similarity=0.346 Sum_probs=19.1
Q ss_pred hHHHHHHHHHcCCeEEEEEEecc
Q 033187 18 VGEIIIRFEKKGFSLKGLKLMTV 40 (125)
Q Consensus 18 ~g~Ii~~i~~~gf~I~~~k~~~l 40 (125)
+..||......||.+.++.|-..
T Consensus 17 leRVLrvtrhRGF~vcamnmt~~ 39 (86)
T COG3978 17 LERVLRVTRHRGFRVCAMNMTAA 39 (86)
T ss_pred HHHHHHHhhhcCeEEEEeecccc
Confidence 46788888999999999988653
No 62
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=24.67 E-value=1.6e+02 Score=17.47 Aligned_cols=34 Identities=15% Similarity=0.396 Sum_probs=25.4
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEec
Q 033187 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT 39 (125)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~ 39 (125)
++.+.-||. .|.+.+|++.|.++|..|..+....
T Consensus 3 sl~~~~~d~--~G~L~~il~~f~~~~ini~~i~s~p 36 (80)
T cd04905 3 SIVFTLPNK--PGALYDVLGVFAERGINLTKIESRP 36 (80)
T ss_pred EEEEEECCC--CCHHHHHHHHHHHCCcCEEEEEEEE
Confidence 455555663 4557899999999999999886544
No 63
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=24.51 E-value=3.1e+02 Score=20.57 Aligned_cols=46 Identities=9% Similarity=0.153 Sum_probs=30.8
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEE---------eccCHHHHHHHHH
Q 033187 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKL---------MTVDRPFAEKHYE 50 (125)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~---------~~l~~~~a~~~y~ 50 (125)
+-++|+-|..-. .-..+.+.+.++||+|...+- -+++++.+.++-.
T Consensus 121 ~RIalvTPY~~~--v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~ 175 (239)
T TIGR02990 121 RRISLLTPYTPE--TSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAAL 175 (239)
T ss_pred CEEEEECCCcHH--HHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHH
Confidence 457788886433 245788889999999999854 3445555544443
No 64
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=24.41 E-value=2.5e+02 Score=20.71 Aligned_cols=61 Identities=15% Similarity=0.158 Sum_probs=33.3
Q ss_pred HHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcchhhhhhhCC
Q 033187 19 GEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGA 90 (125)
Q Consensus 19 g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav~~~r~l~Gp 90 (125)
+.+.+.|.+.|+.+...-...... .......+.+.+..|++-++.+....+++.+-+++|+
T Consensus 143 ~~L~~~L~~~G~~v~~~~vY~~~~-----------~~~~~~~~~~~~~~~~~d~v~ftS~~~~~~~~~~~~~ 203 (255)
T PRK05752 143 ELLAERLREQGASVDYLELYRRCL-----------PDYPAGTLLQRVEAERLNGLVVSSGQGFEHLQQLAGA 203 (255)
T ss_pred HHHHHHHHHCCCEEeEEEEEeecC-----------CCCCHHHHHHHHHhCCCCEEEECCHHHHHHHHHHhCh
Confidence 456677888888887775543110 0111223334444556666666665666666665553
No 65
>PRK00194 hypothetical protein; Validated
Probab=24.22 E-value=1.6e+02 Score=17.94 Aligned_cols=35 Identities=9% Similarity=0.211 Sum_probs=28.1
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEec
Q 033187 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMT 39 (125)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~ 39 (125)
..+-+.-|| ..|.+.+|.+.|.++|+.|..+....
T Consensus 4 ~~ltv~g~D--rpGiva~vt~~la~~g~nI~~~~~~~ 38 (90)
T PRK00194 4 AIITVIGKD--KVGIIAGVSTVLAELNVNILDISQTI 38 (90)
T ss_pred EEEEEEcCC--CCCHHHHHHHHHHHcCCCEEehhhHh
Confidence 456677788 46778899999999999999987653
No 66
>PRK15070 propanediol utilization phosphotransacylase; Provisional
Probab=23.03 E-value=76 Score=23.66 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=25.5
Q ss_pred CeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeec
Q 033187 30 FSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGE 78 (125)
Q Consensus 30 f~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~ 78 (125)
-.|++.|.++|++++|++|- +..|..+.+.+.|+
T Consensus 135 GvIvA~RHIHm~p~dA~~~g---------------vkdg~~V~V~v~g~ 168 (211)
T PRK15070 135 GVIVAKRHIHMSPEDAEKFG---------------VKDGDIVSVKVEGE 168 (211)
T ss_pred cEEEEecccCCCHHHHHHhC---------------CCCCCEEEEEecCC
Confidence 57899999999999999873 23455666666664
No 67
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=22.48 E-value=2.8e+02 Score=19.37 Aligned_cols=45 Identities=11% Similarity=-0.061 Sum_probs=28.8
Q ss_pred EEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHH
Q 033187 6 IMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE 50 (125)
Q Consensus 6 ~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~ 50 (125)
.+|-|........-+.++.+.+.|....+.|.-.++.++..++..
T Consensus 2 y~It~~~~~~~~~~~~l~~~~~~gv~~v~lR~k~~~~~~~~~~a~ 46 (180)
T PF02581_consen 2 YLITDPRLCGDDFLEQLEAALAAGVDLVQLREKDLSDEELLELAR 46 (180)
T ss_dssp EEEE-STTSTCHHHHHHHHHHHTT-SEEEEE-SSS-HHHHHHHHH
T ss_pred EEEeCCchhcchHHHHHHHHHHCCCcEEEEcCCCCCccHHHHHHH
Confidence 455555444333456777888899999999999999988655544
No 68
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=22.41 E-value=1.8e+02 Score=21.68 Aligned_cols=31 Identities=13% Similarity=0.140 Sum_probs=23.7
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEE
Q 033187 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLK 33 (125)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~ 33 (125)
.++++..|+........+.++.+.+.|..+.
T Consensus 162 ~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~ 192 (254)
T cd00550 162 SFRLVCIPEKMSLYETERAIQELAKYGIDVD 192 (254)
T ss_pred EEEEEeCCChhHHHHHHHHHHHHHHCCCCCC
Confidence 4688999998776556778888988887543
No 69
>PF13076 DUF3940: Protein of unknown function (DUF3940)
Probab=21.38 E-value=64 Score=17.33 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCC-eEEEEEEeccCHHHHHHHHH
Q 033187 19 GEIIIRFEKKGF-SLKGLKLMTVDRPFAEKHYE 50 (125)
Q Consensus 19 g~Ii~~i~~~gf-~I~~~k~~~l~~~~a~~~y~ 50 (125)
..+|+.|.+.|+ ....-....+|-++.++.|.
T Consensus 4 ~~lI~~Li~~Giyk~~drqL~Eltl~ELe~ey~ 36 (38)
T PF13076_consen 4 DFLIEKLIQSGIYKKEDRQLYELTLSELEKEYE 36 (38)
T ss_pred HHHHHHHHHcCCcCccchHHHHcCHHHHHHHHH
Confidence 467888888884 44443366777777777765
No 70
>PRK12483 threonine dehydratase; Reviewed
Probab=21.37 E-value=2.2e+02 Score=24.08 Aligned_cols=55 Identities=15% Similarity=0.283 Sum_probs=32.6
Q ss_pred HHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCc--------eEEEEE-eecCcchhhhhhhC
Q 033187 19 GEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGP--------VVAMIW-EGEGVVKTGRTIIG 89 (125)
Q Consensus 19 g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp--------~~al~l-~g~nav~~~r~l~G 89 (125)
.+|++.|+++||.+..+ +.. +.+..++.||-.|- ..+..+ +.+.+..++-+.+|
T Consensus 400 ~~i~~~l~~~g~~~~dl-----sdn------------e~~k~h~r~~~g~~~~~~~~E~~~~v~iPE~pGa~~~f~~~l~ 462 (521)
T PRK12483 400 AQLLASLRAQGFPVLDL-----TDD------------ELAKLHIRHMVGGRAPLAHDERLFRFEFPERPGALMKFLSRLG 462 (521)
T ss_pred HHHHHHHHHCCCCeEEC-----CCC------------HHHHHHHHhccCCCCCCCCceEEEEEEcCCCCcHHHHHHHHhC
Confidence 46666666666665533 222 22344566676662 344445 56778888888888
Q ss_pred C
Q 033187 90 A 90 (125)
Q Consensus 90 p 90 (125)
+
T Consensus 463 ~ 463 (521)
T PRK12483 463 P 463 (521)
T ss_pred C
Confidence 7
No 71
>KOG4132 consensus Uroporphyrinogen III synthase UROS/HEM4 [Coenzyme transport and metabolism]
Probab=21.11 E-value=2.1e+02 Score=21.94 Aligned_cols=74 Identities=12% Similarity=0.166 Sum_probs=53.1
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcch
Q 033187 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVK 82 (125)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav~ 82 (125)
.++.++|-+.+. ...-...+...||.-.-+-.++++--...+|-...+.-+.| ..+++..+.+|+
T Consensus 4 ~~vlllK~~s~~---~D~Y~~~l~~~~~epifIP~l~f~f~~l~~lr~kL~~p~kY------------~giIfTSpR~VE 68 (260)
T KOG4132|consen 4 VTVLLLKNKSVP---IDPYEEELRSYGLEPIFIPVLSFTFVNLQQLRAKLNNPPKY------------AGIIFTSPRCVE 68 (260)
T ss_pred eeEEEecCCCCC---CCHHHHHHHhcCCCceeecceeeeeccHHHHHHHhcCchhh------------ceeEEeChHHHH
Confidence 378899988766 36778899999999888877776665555554443322222 237788889999
Q ss_pred hhhhhhCCC
Q 033187 83 TGRTIIGAT 91 (125)
Q Consensus 83 ~~r~l~Gp~ 91 (125)
.+.+-++++
T Consensus 69 a~~eaL~q~ 77 (260)
T KOG4132|consen 69 ALNEALIQT 77 (260)
T ss_pred HHHHHhccc
Confidence 999988876
No 72
>PRK10206 putative oxidoreductase; Provisional
Probab=21.07 E-value=2.8e+02 Score=21.61 Aligned_cols=45 Identities=13% Similarity=-0.027 Sum_probs=34.1
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (125)
+++.-|.... -++.....++|..|..-|-+.++.++++++....+
T Consensus 68 V~I~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 112 (344)
T PRK10206 68 VVVCTHADSH----FEYAKRALEAGKNVLVEKPFTPTLAEAKELFALAK 112 (344)
T ss_pred EEEeCCchHH----HHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHH
Confidence 4455565543 46667777889999999999999999999877543
No 73
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=20.56 E-value=1.6e+02 Score=17.49 Aligned_cols=27 Identities=11% Similarity=0.287 Sum_probs=21.5
Q ss_pred CchHHHHHHHHHcCCeEEEEEEeccCH
Q 033187 16 GLVGEIIIRFEKKGFSLKGLKLMTVDR 42 (125)
Q Consensus 16 ~~~g~Ii~~i~~~gf~I~~~k~~~l~~ 42 (125)
|.+-.+-+.|.++|..|..+++..+..
T Consensus 14 Giv~~v~~~l~~~g~ni~d~~~~~~~~ 40 (76)
T PF13740_consen 14 GIVAAVTGVLAEHGCNIEDSRQAVLGG 40 (76)
T ss_dssp THHHHHHHHHHCTT-EEEEEEEEEETT
T ss_pred cHHHHHHHHHHHCCCcEEEEEEEEEcC
Confidence 456788899999999999999987543
No 74
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=20.56 E-value=2.3e+02 Score=18.02 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=24.2
Q ss_pred EEEEEEcCcccccC---chHHHHHHHHHcCCeEEEEEEe
Q 033187 3 QTFIMIKPDGVQRG---LVGEIIIRFEKKGFSLKGLKLM 38 (125)
Q Consensus 3 ~tl~lIKPda~~~~---~~g~Ii~~i~~~gf~I~~~k~~ 38 (125)
.+++|++|+.=... .+..+-+.|.++|-+|......
T Consensus 9 E~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~w 47 (97)
T CHL00123 9 ETMYLLKPDLNEEELLKWIENYKKLLRKRGAKNISVQNR 47 (97)
T ss_pred eEEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEee
Confidence 47899999964432 2334445567889888877653
No 75
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.53 E-value=2.2e+02 Score=17.36 Aligned_cols=17 Identities=12% Similarity=0.462 Sum_probs=12.5
Q ss_pred hHHHHHHHHHcCCeEEE
Q 033187 18 VGEIIIRFEKKGFSLKG 34 (125)
Q Consensus 18 ~g~Ii~~i~~~gf~I~~ 34 (125)
...+++.|.++|+.+..
T Consensus 55 ~~~i~~~L~~~G~~~~~ 71 (85)
T cd04906 55 LAELLEDLKSAGYEVVD 71 (85)
T ss_pred HHHHHHHHHHCCCCeEE
Confidence 56788888888887654
No 76
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=20.23 E-value=2.5e+02 Score=18.40 Aligned_cols=36 Identities=8% Similarity=0.218 Sum_probs=25.8
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcC--CeEEEEEE
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKG--FSLKGLKL 37 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~g--f~I~~~k~ 37 (125)
....+-+.=+-+.++.+.++++.+.+.| |+|.....
T Consensus 2 ~s~~VeL~GHLiDSgil~~vLD~I~d~GG~F~i~~~~v 39 (103)
T PF04455_consen 2 FSREVELEGHLIDSGILNRVLDIIMDMGGDFEILEFDV 39 (103)
T ss_dssp EEEEEEEEE--TTSSHHHHHHHHHHHTT-EEEEEEEE-
T ss_pred ccEEEEEEEeeechhhHHHHHHHHHhcCCCEEEEEEEe
Confidence 4455666777788898999999999886 77776664
No 77
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=20.09 E-value=93 Score=17.19 Aligned_cols=16 Identities=25% Similarity=0.613 Sum_probs=12.8
Q ss_pred hHHHHHHHHHcCCeEE
Q 033187 18 VGEIIIRFEKKGFSLK 33 (125)
Q Consensus 18 ~g~Ii~~i~~~gf~I~ 33 (125)
+...+++|+++||.|.
T Consensus 21 ~~~~l~~l~~~g~~is 36 (48)
T PF11848_consen 21 VKPLLDRLQQAGFRIS 36 (48)
T ss_pred HHHHHHHHHHcCcccC
Confidence 4677899999999764
No 78
>PF03800 Nuf2: Nuf2 family; InterPro: IPR005549 Members of this family are components of the mitotic spindle. It has been shown that Nuf2 from yeast is part of a complex called the Ndc80p complex []. This complex is thought to bind to the microtubules of the spindle. An arabidopsis protein has been included in this family that has previously not been identified as a member of this family, Q9C953 from SWISSPROT. The match is not strong, but in common with other members of this family contains coiled-coil to the C terminus of this region.; GO: 0007067 mitosis, 0000775 chromosome, centromeric region; PDB: 2VE7_D 3IZ0_D.
Probab=20.03 E-value=43 Score=22.86 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=25.4
Q ss_pred hHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHh
Q 033187 18 VGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL 52 (125)
Q Consensus 18 ~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~ 52 (125)
..+|+..|.+.|+.+..-...+.+++.+..+|...
T Consensus 14 ~~eIv~~L~~~~~~~t~~dl~kPt~e~v~~ly~~~ 48 (146)
T PF03800_consen 14 PDEIVNCLQECGIPVTEEDLKKPTPEFVQKLYERF 48 (146)
T ss_dssp HHHHHHHHHHHT--HHHHC--G--HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCHHHHcCCCHHHHHHHHHHH
Confidence 57999999999999888889999999999998753
Done!