Query 033187
Match_columns 125
No_of_seqs 121 out of 1035
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 17:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hr2_A Nucleoside diphosphate 100.0 2E-51 6.7E-56 286.3 10.7 121 1-121 7-127 (145)
2 3evo_A NDP kinase, NDK, nucleo 100.0 2.7E-50 9.2E-55 281.0 11.6 121 1-121 6-127 (146)
3 3mpd_A Nucleoside diphosphate 100.0 2.9E-50 1E-54 282.2 11.0 121 1-121 5-125 (151)
4 3q8u_A Nucleoside diphosphate 100.0 3.6E-50 1.2E-54 283.1 11.1 121 1-121 1-121 (157)
5 1wkj_A Nucleoside diphosphate 100.0 4.7E-50 1.6E-54 277.5 11.0 121 1-121 1-121 (137)
6 1k44_A Nucleoside diphosphate 100.0 1E-49 3.4E-54 275.6 11.5 121 1-121 2-123 (136)
7 3fkb_A NDP kinase, NDK, nucleo 100.0 7.7E-50 2.6E-54 281.1 10.0 121 1-121 8-128 (155)
8 3ztp_A Nucleoside diphosphate 100.0 3.4E-50 1.2E-54 279.6 7.8 121 1-121 3-126 (142)
9 4fkx_A NDK B, nucleoside dipho 100.0 9.7E-50 3.3E-54 281.7 10.2 121 1-121 11-131 (161)
10 2hur_A NDK, nucleoside diphosp 100.0 1.5E-49 5.1E-54 276.4 10.7 121 1-121 2-122 (142)
11 1nhk_R Nucleoside diphosphate 100.0 1.6E-49 5.4E-54 276.8 10.0 121 1-121 2-122 (144)
12 2vu5_A Nucleoside diphosphate 100.0 1.8E-49 6.1E-54 277.7 10.0 121 1-121 1-121 (148)
13 3l7u_A Nucleoside diphosphate 100.0 2.4E-49 8.3E-54 282.1 10.4 121 1-121 24-144 (172)
14 1u8w_A Nucleoside diphosphate 100.0 2.7E-49 9.4E-54 276.9 10.3 121 1-121 1-121 (149)
15 1xiq_A Nucleoside diphosphate 100.0 3.2E-49 1.1E-53 278.4 10.1 121 1-121 9-129 (157)
16 3r9l_A Nucleoside diphosphate 100.0 8.4E-50 2.9E-54 280.9 7.0 121 1-121 7-127 (155)
17 1pku_A Nucleoside diphosphate 100.0 3.2E-49 1.1E-53 276.8 9.9 121 1-121 2-122 (150)
18 1s57_A Nucleoside diphosphate 100.0 8.1E-49 2.8E-53 275.6 11.2 121 1-121 5-125 (153)
19 1nb2_A Nucleoside diphosphate 100.0 3.4E-49 1.2E-53 276.7 8.2 121 1-121 2-122 (150)
20 3bbb_A Nucleoside diphosphate 100.0 8.6E-49 3E-53 274.9 10.2 121 1-121 3-123 (151)
21 3js9_A Nucleoside diphosphate 100.0 9.8E-49 3.3E-53 275.6 9.8 121 1-121 9-129 (156)
22 1ehw_A NDPK H4, nucleoside dip 100.0 1.2E-48 4.1E-53 276.6 10.1 121 1-121 24-144 (162)
23 2az3_A Nucleoside diphosphate 100.0 3.8E-48 1.3E-52 274.6 11.4 121 1-121 8-128 (164)
24 1zs6_A Nucleoside diphosphate 100.0 3E-48 1E-52 276.3 9.4 121 1-121 21-141 (169)
25 2dxe_A Nucleoside diphosphate 100.0 4.3E-48 1.5E-52 273.6 10.0 120 2-121 8-130 (160)
26 3b54_A NDK, NDP kinase, nucleo 100.0 1.8E-48 6.1E-53 275.6 8.0 121 1-121 13-133 (161)
27 1w7w_A Nucleoside diphosphate 100.0 4.3E-48 1.5E-52 278.1 10.0 121 1-121 32-152 (182)
28 4dz6_A Nucleoside diphosphate 100.0 9.4E-48 3.2E-52 277.7 7.1 121 1-121 26-161 (190)
29 1xqi_A Nucleoside diphosphate 100.0 2.8E-45 9.6E-50 266.2 6.5 121 1-121 15-178 (195)
30 3bh7_B Protein XRP2; protein-p 100.0 2.2E-31 7.4E-36 207.9 7.3 99 1-121 235-333 (352)
31 3p04_A Uncharacterized BCR; SE 82.3 2.1 7E-05 26.6 4.2 44 3-50 5-48 (87)
32 3i5g_C Myosin catalytic light 38.3 25 0.00085 22.9 2.9 32 39-70 117-154 (159)
33 2jwk_A Protein TOLR; periplasm 35.7 20 0.00068 20.2 1.8 27 5-31 47-74 (74)
34 1lc0_A Biliverdin reductase A; 32.7 71 0.0024 23.1 4.9 63 4-70 68-143 (294)
35 1w5q_A Delta-aminolevulinic ac 31.9 4 0.00014 31.3 -2.1 46 7-54 171-216 (337)
36 1l6s_A Porphobilinogen synthas 31.1 3.6 0.00012 31.4 -2.5 45 7-53 160-204 (323)
37 4fb5_A Probable oxidoreductase 29.5 63 0.0022 23.7 4.2 61 4-68 97-170 (393)
38 3dty_A Oxidoreductase, GFO/IDH 28.4 79 0.0027 23.8 4.6 46 4-53 88-133 (398)
39 1w1z_A Delta-aminolevulinic ac 28.0 3.7 0.00013 31.4 -2.9 45 7-53 166-210 (328)
40 1jg5_A GTP cyclohydrolase I fe 27.4 67 0.0023 19.4 3.2 21 18-38 52-72 (83)
41 2fi0_A Conserved domain protei 26.9 50 0.0017 19.4 2.6 16 18-33 63-78 (81)
42 3rc1_A Sugar 3-ketoreductase; 26.4 1.1E+02 0.0036 22.7 5.0 67 5-75 93-175 (350)
43 2ho3_A Oxidoreductase, GFO/IDH 24.9 1.9E+02 0.0067 20.7 6.2 56 19-74 76-144 (325)
44 3fhl_A Putative oxidoreductase 24.6 96 0.0033 23.0 4.4 66 5-74 69-150 (362)
45 3o9z_A Lipopolysaccaride biosy 24.5 87 0.003 22.8 4.1 67 5-75 76-156 (312)
46 3bkw_A MLL3908 protein, S-aden 24.4 1.3E+02 0.0043 20.2 4.8 29 18-46 194-222 (243)
47 3oa2_A WBPB; oxidoreductase, s 23.1 82 0.0028 23.1 3.7 67 5-75 77-159 (318)
48 3v5n_A Oxidoreductase; structu 23.0 89 0.003 23.8 4.0 68 4-75 113-196 (417)
49 2pfu_A Biopolymer transport EX 23.0 44 0.0015 19.9 1.9 27 5-31 59-86 (99)
50 3gdo_A Uncharacterized oxidore 22.6 1.1E+02 0.0037 22.7 4.4 60 5-68 69-141 (358)
51 3db2_A Putative NADPH-dependen 22.3 1.1E+02 0.0036 22.6 4.3 60 5-68 70-142 (354)
52 3ohs_X Trans-1,2-dihydrobenzen 22.2 96 0.0033 22.6 4.0 67 5-75 70-152 (334)
53 4h3v_A Oxidoreductase domain p 22.1 1.1E+02 0.0038 22.3 4.3 42 4-49 78-119 (390)
54 3ezy_A Dehydrogenase; structur 22.1 1.2E+02 0.0043 22.1 4.6 67 5-75 68-150 (344)
55 1whz_A Hypothetical protein; a 21.8 90 0.0031 17.5 3.0 18 18-35 7-24 (70)
56 3evn_A Oxidoreductase, GFO/IDH 21.4 1.2E+02 0.0042 22.0 4.4 67 5-75 71-153 (329)
57 3u3x_A Oxidoreductase; structu 21.4 1.2E+02 0.0042 22.4 4.5 67 5-75 92-175 (361)
58 4gqa_A NAD binding oxidoreduct 21.3 1.1E+02 0.0036 23.1 4.1 44 5-52 100-143 (412)
59 4hkt_A Inositol 2-dehydrogenas 21.0 1.2E+02 0.0039 22.1 4.2 60 5-68 67-139 (331)
60 1zh8_A Oxidoreductase; TM0312, 20.9 1.3E+02 0.0043 22.1 4.4 67 5-75 86-168 (340)
61 1gtd_A MTH169; synthetase, FGA 20.8 1.4E+02 0.0048 17.6 4.2 32 4-37 7-39 (85)
62 3dfe_A Putative PII-like signa 20.5 66 0.0023 20.3 2.4 31 3-35 8-38 (111)
63 3i23_A Oxidoreductase, GFO/IDH 20.1 1.1E+02 0.0036 22.6 3.8 67 5-75 69-151 (349)
64 4had_A Probable oxidoreductase 20.0 71 0.0024 23.4 2.8 61 4-68 89-162 (350)
No 1
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=2e-51 Score=286.25 Aligned_cols=121 Identities=34% Similarity=0.605 Sum_probs=119.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 7 ~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 86 (145)
T 4hr2_A 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGEDA 86 (145)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred HHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCCc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||.+|.|+|||++||.+..+|++||||+++
T Consensus 87 V~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs~e 127 (145)
T 4hr2_A 87 ILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPE 127 (145)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCSHH
T ss_pred HhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECCCCHH
Confidence 99999999999999999999999999999999999999975
No 2
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=2.7e-50 Score=281.04 Aligned_cols=121 Identities=36% Similarity=0.655 Sum_probs=119.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEecc-CHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecC
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTV-DRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEG 79 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l-~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~n 79 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++| |+++|++||.+|++++||+.|++||+||||++|+++|+|
T Consensus 6 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~n 85 (146)
T 3evo_A 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEGTD 85 (146)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEETT
T ss_pred ceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeCCC
Confidence 5899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred cchhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 80 VVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 80 av~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
||+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 86 aV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~e 127 (146)
T 3evo_A 86 AISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSED 127 (146)
T ss_dssp HHHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCSHH
T ss_pred HHHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCCHH
Confidence 999999999999999999999999999999999999999975
No 3
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=2.9e-50 Score=282.22 Aligned_cols=121 Identities=46% Similarity=0.755 Sum_probs=119.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 5 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 84 (151)
T 3mpd_A 5 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKDA 84 (151)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred eEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCcH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||.+|.|+|||++||.+..+|++||||+++
T Consensus 85 V~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs~e 125 (151)
T 3mpd_A 85 VSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVE 125 (151)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSSHH
T ss_pred HHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 4
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=3.6e-50 Score=283.12 Aligned_cols=121 Identities=52% Similarity=0.844 Sum_probs=119.2
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
||+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.++++++||++|++||+||||++|+++|+||
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 80 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA 80 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||.+|.|+|||++||.+..+|++||||+++
T Consensus 81 V~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~e 121 (157)
T 3q8u_A 81 VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLE 121 (157)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHH
T ss_pred HHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 5
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=4.7e-50 Score=277.51 Aligned_cols=121 Identities=54% Similarity=0.909 Sum_probs=119.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 81 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~e 121 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLE 121 (137)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHH
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCCHH
Confidence 99999999999999999999999999999999999999975
No 6
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=1e-49 Score=275.57 Aligned_cols=121 Identities=47% Similarity=0.790 Sum_probs=118.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 81 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCC-CCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPA-QSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~-~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||. .|.|+|||++||.+..+|++||||+++
T Consensus 82 V~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHgSDs~e 123 (136)
T 1k44_A 82 IAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAE 123 (136)
T ss_dssp HHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSSHH
T ss_pred HHHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEeCCCHH
Confidence 99999999999999 999999999999999999999999975
No 7
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=7.7e-50 Score=281.06 Aligned_cols=121 Identities=55% Similarity=0.925 Sum_probs=119.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 8 ~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 87 (155)
T 3fkb_A 8 KERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKGV 87 (155)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||.+|.|+|||++||.+..+|++||||+++
T Consensus 88 V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~e 128 (155)
T 3fkb_A 88 VASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVE 128 (155)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHH
T ss_pred HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 8
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=3.4e-50 Score=279.63 Aligned_cols=121 Identities=36% Similarity=0.654 Sum_probs=118.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~na 82 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDA 82 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCC---CCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQS---APGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a---~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||.+| .|+|||++||.+..+|++||||+++
T Consensus 83 V~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~e 126 (142)
T 3ztp_A 83 IKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPE 126 (142)
T ss_dssp HHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHH
T ss_pred HHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHH
Confidence 9999999999999999 9999999999999999999999975
No 9
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=9.7e-50 Score=281.67 Aligned_cols=121 Identities=57% Similarity=0.942 Sum_probs=118.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.++++++||++|++||+||||++|+++|+||
T Consensus 11 ~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 90 (161)
T 4fkx_A 11 SERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLGV 90 (161)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||.+|.|+|||++||.+..+|++||||+++
T Consensus 91 V~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgSDs~e 131 (161)
T 4fkx_A 91 VKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVE 131 (161)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHH
T ss_pred HHHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 10
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=1.5e-49 Score=276.40 Aligned_cols=121 Identities=37% Similarity=0.629 Sum_probs=118.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 82 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~e 122 (142)
T 2hur_A 82 VQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVE 122 (142)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEECSSHH
T ss_pred HHHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 11
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=1.6e-49 Score=276.75 Aligned_cols=121 Identities=41% Similarity=0.691 Sum_probs=118.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~e 122 (144)
T 1nhk_R 82 VLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLE 122 (144)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECSSHH
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 12
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=1.8e-49 Score=277.69 Aligned_cols=121 Identities=54% Similarity=0.962 Sum_probs=119.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV 80 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 81 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e 121 (148)
T 2vu5_A 81 VDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLE 121 (148)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEECSSHH
T ss_pred HHHHHHHhCCCCccccCCCChHHHhcCCcccceEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 13
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-49 Score=282.10 Aligned_cols=121 Identities=60% Similarity=0.988 Sum_probs=118.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.++++++||++|++||+||||++|+++|+||
T Consensus 24 ~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 103 (172)
T 3l7u_A 24 CERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGLNV 103 (172)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred hceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeCCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||++|.|+|||++||.+..+|++||||+++
T Consensus 104 V~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSDs~e 144 (172)
T 3l7u_A 104 VKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 144 (172)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECSSHH
T ss_pred HHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 14
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=2.7e-49 Score=276.95 Aligned_cols=121 Identities=74% Similarity=1.136 Sum_probs=119.2
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
||+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 81 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~e 121 (149)
T 1u8w_A 81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVE 121 (149)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHH
T ss_pred hHHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEecCCHH
Confidence 99999999999999999999999999999999999999975
No 15
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=3.2e-49 Score=278.41 Aligned_cols=121 Identities=52% Similarity=0.912 Sum_probs=119.3
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
||+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.++++++||++|++||+||||++|+++|+||
T Consensus 9 ~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 88 (157)
T 1xiq_A 9 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGVDM 88 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEESTTH
T ss_pred hheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEecccc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||+.||.+..+|++||||+++
T Consensus 89 V~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgSDs~e 129 (157)
T 1xiq_A 89 VKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVA 129 (157)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHH
T ss_pred hHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 16
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=8.4e-50 Score=280.86 Aligned_cols=121 Identities=51% Similarity=0.928 Sum_probs=92.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 7 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 86 (155)
T 3r9l_A 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANV 86 (155)
T ss_dssp SCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEESTTH
T ss_pred hheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||.+|.|+|||++||.+..+|++||||+++
T Consensus 87 V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~e 127 (155)
T 3r9l_A 87 VSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLD 127 (155)
T ss_dssp HHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECSSHH
T ss_pred HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 17
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=3.2e-49 Score=276.84 Aligned_cols=121 Identities=65% Similarity=1.066 Sum_probs=119.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||+.|++||+||||++|+++|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 81 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV 81 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~e 122 (150)
T 1pku_A 82 VATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVD 122 (150)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEECSSHH
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 18
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=8.1e-49 Score=275.62 Aligned_cols=121 Identities=61% Similarity=1.017 Sum_probs=119.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 5 ~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 84 (153)
T 1s57_A 5 VEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGV 84 (153)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEETTH
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||+.||.+..+|++||||+++
T Consensus 85 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~e 125 (153)
T 1s57_A 85 VASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPE 125 (153)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECSSHH
T ss_pred HHHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcCCCHH
Confidence 99999999999999999999999999999999999999975
No 19
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=3.4e-49 Score=276.74 Aligned_cols=121 Identities=52% Similarity=0.867 Sum_probs=119.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na 81 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 81 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 82 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e 122 (150)
T 1nb2_A 82 AATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAG 122 (150)
T ss_dssp HHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECSSHH
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 20
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=8.6e-49 Score=274.95 Aligned_cols=121 Identities=57% Similarity=0.965 Sum_probs=118.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||+++++++|++||.+|.+++||++|++||+||||++|+++|+||
T Consensus 3 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 82 (151)
T 3bbb_A 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNV 82 (151)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 83 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e 123 (151)
T 3bbb_A 83 VKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVK 123 (151)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHH
T ss_pred HHHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEecCCHH
Confidence 99999999999999999999999999999999999999975
No 21
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=9.8e-49 Score=275.57 Aligned_cols=121 Identities=45% Similarity=0.815 Sum_probs=119.1
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
||+|++|||||++.++++|+||++|+++||.|+++||++||+++|++||.+++++|||++|++||+||||++|+++|+||
T Consensus 9 ~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~na 88 (156)
T 3js9_A 9 MERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGPEA 88 (156)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEETTH
T ss_pred hhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEeccch
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|++||+++|||||.+|.|+|||+.||.+..+|++||||+++
T Consensus 89 V~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~e 129 (156)
T 3js9_A 89 IKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAE 129 (156)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHH
T ss_pred HHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcCCCHH
Confidence 99999999999999999999999999999999999999965
No 22
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.2e-48 Score=276.61 Aligned_cols=121 Identities=48% Similarity=0.887 Sum_probs=118.8
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.++++++||++|++||+||||++|+++|+||
T Consensus 24 ~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 103 (162)
T 1ehw_A 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNV 103 (162)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechhH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 104 V~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgSDs~e 144 (162)
T 1ehw_A 104 VRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVE 144 (162)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSSHH
T ss_pred HHHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEECCCHH
Confidence 99999999999999999999999999999999999999975
No 23
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=3.8e-48 Score=274.64 Aligned_cols=121 Identities=46% Similarity=0.832 Sum_probs=119.2
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 8 ~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 87 (164)
T 2az3_A 8 DERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGADA 87 (164)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEccccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||+.||.+..+|++||||+++
T Consensus 88 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e 128 (164)
T 2az3_A 88 TRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHED 128 (164)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTS
T ss_pred HHHHHHHhCCCCccccCCCcchhhhcccccCceEEecCCcc
Confidence 99999999999999999999999999999999999999986
No 24
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=3e-48 Score=276.32 Aligned_cols=121 Identities=52% Similarity=0.934 Sum_probs=118.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||+|+++||++|++++|++||.+|++++||++|++||+||||++|+++|+||
T Consensus 21 ~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 100 (169)
T 1zs6_A 21 HERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKYMASGPVVAMVWQGLDV 100 (169)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 101 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~e 141 (169)
T 1zs6_A 101 VRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVE 141 (169)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECSSHH
T ss_pred hHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEecCCHH
Confidence 99999999999999999999999999999999999999975
No 25
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=4.3e-48 Score=273.57 Aligned_cols=120 Identities=50% Similarity=0.836 Sum_probs=118.2
Q ss_pred cEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCcc
Q 033187 2 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVV 81 (125)
Q Consensus 2 e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~nav 81 (125)
|+||+|||||++.++++|+||++|+++||+|+++||+++|+++|++||.+|++++||++|++||+||||++|+++|+|||
T Consensus 8 erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~aV 87 (160)
T 2dxe_A 8 ERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRYAV 87 (160)
T ss_dssp EEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETHH
T ss_pred CeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhCCCCCCCCCCCCcccccccCcCC---cEEeccCCCc
Q 033187 82 KTGRTIIGATNPAQSAPGTIRGDLAIVTGR---LFIKLALLSF 121 (125)
Q Consensus 82 ~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~---N~vh~s~~~~ 121 (125)
+.||+++|||||..|.|+|||++||.+..+ |++||||+++
T Consensus 88 ~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~vHgSDs~e 130 (160)
T 2dxe_A 88 EVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKE 130 (160)
T ss_dssp HHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSSHH
T ss_pred HHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceEEcCCCHH
Confidence 999999999999999999999999999999 9999999975
No 26
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-48 Score=275.59 Aligned_cols=121 Identities=51% Similarity=0.888 Sum_probs=111.9
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.++++++||++|++||+||||++|+++|+||
T Consensus 13 ~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 92 (161)
T 3b54_A 13 TERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEGKDV 92 (161)
T ss_dssp CCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEESTTH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 93 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e 133 (161)
T 3b54_A 93 VRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVD 133 (161)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHH
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 27
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=4.3e-48 Score=278.10 Aligned_cols=121 Identities=58% Similarity=1.039 Sum_probs=119.0
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
+|+||+|||||++.++++|+||++|+++||+|+++||++||+++|++||.++++++||++|++||+||||++|+++|+||
T Consensus 32 ~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~Lv~~mtSGPvvamvleG~na 111 (182)
T 1w7w_A 32 LERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGLCDFLSSGPVIAMVWEGEGV 111 (182)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEecccH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|||||..|.|+|||++||.+..+|++||||+++
T Consensus 112 V~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~e 152 (182)
T 1w7w_A 112 ITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPE 152 (182)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHH
T ss_pred HHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeCCCHH
Confidence 99999999999999999999999999999999999999975
No 28
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=9.4e-48 Score=277.67 Aligned_cols=121 Identities=36% Similarity=0.646 Sum_probs=118.6
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHH-----HhcCCCCHHHHHHHhhcCceEEEEE
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE-----DLSSKPFFGSLIEYITSGPVVAMIW 75 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~-----~~~~~~~~~~lv~~~~sgp~~al~l 75 (125)
+|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||. ++++++||++|++||+||||++|++
T Consensus 26 ~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvamvl 105 (190)
T 4dz6_A 26 LQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTFVV 105 (190)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEEEE
T ss_pred hhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEEEE
Confidence 48999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred eecCcchhhhhhhCCCCCCCCCCCCcccccccCc----------CCcEEeccCCCc
Q 033187 76 EGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVT----------GRLFIKLALLSF 121 (125)
Q Consensus 76 ~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~~----------~~N~vh~s~~~~ 121 (125)
+|+|||+.||+++|||||.+|.|+|||++||.+. .+|++||||+++
T Consensus 106 eG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~e 161 (190)
T 4dz6_A 106 EGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEA 161 (190)
T ss_dssp EEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHH
T ss_pred ecCCHHHHHHHHcCCCChhhcCCCChHHHhcCChhhhccccccccceeEEcCCCHH
Confidence 9999999999999999999999999999999999 999999999975
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=2.8e-45 Score=266.16 Aligned_cols=121 Identities=36% Similarity=0.601 Sum_probs=117.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHH-------------H-----------------
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHY-------------E----------------- 50 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y-------------~----------------- 50 (125)
+|+||++||||++.++++|+||++|+++||.|+++||+++|+++|++|| .
T Consensus 15 ~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~~ 94 (195)
T 1xqi_A 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKAYQELGIDPRAKIGT 94 (195)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCHHHHHSC
T ss_pred hhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHHHHHhCCChhhhhcc
Confidence 4899999999999999999999999999999999999999999999999 7
Q ss_pred ---HhcCCCCHHHHHHHhhcCceEEEEEeecCcchhhhhhhCCCCCCCCCCCCcccccccCcCC----------cEEecc
Q 033187 51 ---DLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGR----------LFIKLA 117 (125)
Q Consensus 51 ---~~~~~~~~~~lv~~~~sgp~~al~l~g~nav~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~----------N~vh~s 117 (125)
.|.+++||+.|++||+||||++|+++|+|||+.||+++|||||..|.|+|||+.||.+..+ |++|||
T Consensus 95 ~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~~~~~~~~~N~vHgS 174 (195)
T 1xqi_A 95 DDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHAS 174 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHHHHTTSCCCCSEEEC
T ss_pred ccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCchhhhccccccccceEEEcC
Confidence 8889999999999999999999999999999999999999999999999999999999888 999999
Q ss_pred CCCc
Q 033187 118 LLSF 121 (125)
Q Consensus 118 ~~~~ 121 (125)
|+++
T Consensus 175 DS~e 178 (195)
T 1xqi_A 175 DSPS 178 (195)
T ss_dssp SSHH
T ss_pred CCHH
Confidence 9975
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.97 E-value=2.2e-31 Score=207.85 Aligned_cols=99 Identities=16% Similarity=0.248 Sum_probs=94.7
Q ss_pred CcEEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCCCCHHHHHHHhhcCceEEEEEeecCc
Q 033187 1 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGV 80 (125)
Q Consensus 1 ~e~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~~~~~~lv~~~~sgp~~al~l~g~na 80 (125)
.|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|. ++|++||+|||+++|+++|+||
T Consensus 235 ~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~~a 309 (352)
T 3bh7_B 235 DESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGDGA 309 (352)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEESTTH
T ss_pred ccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECcCH
Confidence 48999999999999999999999999999999999999999999999999997 6799999999999999999999
Q ss_pred chhhhhhhCCCCCCCCCCCCcccccccCcCCcEEeccCCCc
Q 033187 81 VKTGRTIIGATNPAQSAPGTIRGDLAIVTGRLFIKLALLSF 121 (125)
Q Consensus 81 v~~~r~l~Gp~~p~~a~p~slR~~~g~~~~~N~vh~s~~~~ 121 (125)
|+.||+++|+|+| .|++||||+++
T Consensus 310 v~~~R~l~g~t~p-----------------gN~vHgSds~e 333 (352)
T 3bh7_B 310 VEVCQLIVNEIFN-----------------GTKMFVSESKE 333 (352)
T ss_dssp HHHHHHHHHHHCT-----------------TSCEEECSCHH
T ss_pred HHHHHHHhcCCCC-----------------CceEEecCCHH
Confidence 9999999999996 29999999975
No 31
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=82.31 E-value=2.1 Score=26.57 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=37.2
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHH
Q 033187 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYE 50 (125)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~ 50 (125)
..+++++|..+.. ..+|.+.|.+..-.|.++. .++.++|+++.-
T Consensus 5 ~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~--~ld~~~AqRivD 48 (87)
T 3p04_A 5 STIVPVELHSFED--AQVIGGAFRDGDAVVFDMS--LLSREEARRIVD 48 (87)
T ss_dssp CSCEEEECSSGGG--HHHHHHHHHTTCCEEEECT--TSCHHHHHHHHH
T ss_pred cEEEEEecCcHHH--HHHHHHHHHCCCEEEEECC--CCCHHHHHHHHH
Confidence 4578999999987 7899999999999998887 568999888863
No 32
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=38.26 E-value=25 Score=22.94 Aligned_cols=32 Identities=9% Similarity=0.239 Sum_probs=25.1
Q ss_pred ccCHHHHHHHHHHhc------CCCCHHHHHHHhhcCce
Q 033187 39 TVDRPFAEKHYEDLS------SKPFFGSLIEYITSGPV 70 (125)
Q Consensus 39 ~l~~~~a~~~y~~~~------~~~~~~~lv~~~~sgp~ 70 (125)
.++.+++.+++.... |+-.|.+++..|.+||.
T Consensus 117 ~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~m~~~p~ 154 (159)
T 3i5g_C 117 RITEDQCNDIFTFCDIREDIDGNIKYEDLMKKVMAGPF 154 (159)
T ss_dssp CCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHHHHHCSC
T ss_pred CCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHHHHCCCC
Confidence 478999999987543 24579999999999984
No 33
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=35.69 E-value=20 Score=20.24 Aligned_cols=27 Identities=11% Similarity=0.096 Sum_probs=17.3
Q ss_pred EEEEcCc-ccccCchHHHHHHHHHcCCe
Q 033187 5 FIMIKPD-GVQRGLVGEIIIRFEKKGFS 31 (125)
Q Consensus 5 l~lIKPd-a~~~~~~g~Ii~~i~~~gf~ 31 (125)
-++|++| .+.++.+-.+++.++++|+.
T Consensus 47 ~V~I~aD~~~~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 47 LFLVGGAKEVPYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHHTTCC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 4677777 33444556677777777763
No 34
>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*
Probab=32.75 E-value=71 Score=23.08 Aligned_cols=63 Identities=14% Similarity=0.085 Sum_probs=45.0
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--CC-----------CCHHHHHHHhhcCce
Q 033187 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSGPV 70 (125)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~lv~~~~sgp~ 70 (125)
.+++.-|+... -++.....++|..|..-|.+.++.++++++....+ +. |.+..+.+.+.+|++
T Consensus 68 ~V~i~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~g~i 143 (294)
T 1lc0_A 68 VAYICSESSSH----EDYIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVELLMEEFEFLRREVLGKEL 143 (294)
T ss_dssp EEEECSCGGGH----HHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHTTCCE
T ss_pred EEEEeCCcHhH----HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhccHHHHHHHHHHhcCCe
Confidence 35556666543 36666777889999999999999999999987443 21 234556677888876
No 35
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=31.89 E-value=4 Score=31.31 Aligned_cols=46 Identities=20% Similarity=0.450 Sum_probs=36.0
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS 54 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~ 54 (125)
+|-|..+-.|++|.|-+.|.++||. ++..+..+..-|..||...++
T Consensus 171 iVAPSdMMDGrV~aIR~aLd~~G~~--~v~ImsYsaKyASafYGPFRd 216 (337)
T 1w5q_A 171 VVAPSDMMDGRIGAIREALESAGHT--NVRVMAYSAKYASAYYGPFRD 216 (337)
T ss_dssp EEEECSCCTTHHHHHHHHHHHTTCT--TCEEEEEEEEBCCGGGHHHHH
T ss_pred eEecccccccHHHHHHHHHHHCCCC--CceeehhHHHHHHHHHHHHHH
Confidence 5678888889999999999999994 566677677777777776543
No 36
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=31.13 E-value=3.6 Score=31.39 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=34.9
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (125)
+|-|..+-.|++|.|-+.|.++||. ++..+..+..-|..||...+
T Consensus 160 iVAPSdMMDGrV~aIR~aLd~~G~~--~v~ImsYsaKyASafYGPFR 204 (323)
T 1l6s_A 160 FIAPSAAMDGQVQAIRQALDAAGFK--DTAIMSYSTKFASSFYGPFR 204 (323)
T ss_dssp EEEECSCCTTHHHHHHHHHHHTTCT--TCEEBCCCEEBCCSCCHHHH
T ss_pred eEecccccccHHHHHHHHHHhCCCC--CceeeehhHHHhHHhhHHHH
Confidence 5668888889999999999999993 57777777666666666543
No 37
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=29.46 E-value=63 Score=23.73 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=44.3
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCC-------------CCHHHHHHHhhcC
Q 033187 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSK-------------PFFGSLIEYITSG 68 (125)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~-------------~~~~~lv~~~~sg 68 (125)
.++|--|+... .++.....++|..|..-|-+.++.++++++....+.. |.+..+.+.+.+|
T Consensus 97 aV~IatP~~~H----~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~vg~~~R~~p~~~~~k~~i~~G 170 (393)
T 4fb5_A 97 VVSVTTPNQFH----AEMAIAALEAGKHVWCEKPMAPAYADAERMLATAERSGKVAALGYNYIQNPVMRHIRKLVGDG 170 (393)
T ss_dssp EEEECSCGGGH----HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHSSSCEEECCGGGGCHHHHHHHHHHHTT
T ss_pred EEEECCChHHH----HHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHhcCCccccccccccChHHHHHHHHHHcC
Confidence 35666677654 3666777789999999999999999999998754321 2345566777765
No 38
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=28.35 E-value=79 Score=23.82 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=35.9
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc
Q 033187 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (125)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (125)
.++|.-|+... -++.....++|..|..-|-+.++.++++++....+
T Consensus 88 ~V~i~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~ 133 (398)
T 3dty_A 88 AVSIATPNGTH----YSITKAALEAGLHVVCEKPLCFTVEQAENLRELSH 133 (398)
T ss_dssp EEEEESCGGGH----HHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHH
T ss_pred EEEECCCcHHH----HHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 45566677644 36677777899999999999999999999987533
No 39
>1w1z_A Delta-aminolevulinic acid dehydratase; synthase, tetrapyrrole biosynthesis, ALAD, porphyrin biosynt heme biosynthesis, lyase; 2.6A {Prosthecochloris vibrioformis} SCOP: c.1.10.3 PDB: 2c1h_A*
Probab=27.99 E-value=3.7 Score=31.38 Aligned_cols=45 Identities=16% Similarity=0.409 Sum_probs=35.1
Q ss_pred EEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc
Q 033187 7 MIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS 53 (125)
Q Consensus 7 lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~ 53 (125)
+|-|..+-.|++|.|-+.|.++||. ++..+..+..-|..||...+
T Consensus 166 iVAPSdMMDGrV~aIR~aLd~~G~~--~v~ImsYsaKyASafYGPFR 210 (328)
T 1w1z_A 166 FVSPSDMMDGRIGAIREALDETDHS--DVGILSYAAKYASSFYGPFR 210 (328)
T ss_dssp EEEECSCCTTHHHHHHHHHHHTTCT--TSEEEEEEEEBCCTTCHHHH
T ss_pred eEecccccccHHHHHHHHHHhCCCC--CceeeehhHHHhhhccchHH
Confidence 5678888889999999999999994 56667766666777776554
No 40
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=27.45 E-value=67 Score=19.42 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=17.8
Q ss_pred hHHHHHHHHHcCCeEEEEEEe
Q 033187 18 VGEIIIRFEKKGFSLKGLKLM 38 (125)
Q Consensus 18 ~g~Ii~~i~~~gf~I~~~k~~ 38 (125)
-..++++|+..||++..+.-+
T Consensus 52 Pr~VLnKLE~~G~rVvsmtGv 72 (83)
T 1jg5_A 52 PRIVLDKLECRGFRVLSMTGV 72 (83)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE
T ss_pred hHHHHHHHhccCeEEEEEecC
Confidence 468999999999999988654
No 41
>2fi0_A Conserved domain protein; structural genomics,streptococcus pneumoniae, PSI, protein S initiative; 2.10A {Streptococcus pneumoniae} SCOP: a.248.1.1
Probab=26.89 E-value=50 Score=19.45 Aligned_cols=16 Identities=19% Similarity=0.522 Sum_probs=14.2
Q ss_pred hHHHHHHHHHcCCeEE
Q 033187 18 VGEIIIRFEKKGFSLK 33 (125)
Q Consensus 18 ~g~Ii~~i~~~gf~I~ 33 (125)
+.++++.|.+.||+|.
T Consensus 63 ~d~l~~~L~~~g~~~~ 78 (81)
T 2fi0_A 63 MDKIVRTLEANGYEVI 78 (81)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHcCCEee
Confidence 4789999999999986
No 42
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=26.44 E-value=1.1e+02 Score=22.66 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=45.6
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC-------------CCCHHHHHHHhhcC---
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS-------------KPFFGSLIEYITSG--- 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~-------------~~~~~~lv~~~~sg--- 68 (125)
+++--|+... -++.....++|..|..-|.+.++.++++++....+. .|.+..+.+.+.+|
T Consensus 93 V~i~tp~~~h----~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG 168 (350)
T 3rc1_A 93 VYVPLPAVLH----AEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLDEGVIG 168 (350)
T ss_dssp EEECCCGGGH----HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHHTTTTC
T ss_pred EEECCCcHHH----HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHhcCCCC
Confidence 3444555543 466667788999999999999999999999775332 23455666777764
Q ss_pred ceEEEEE
Q 033187 69 PVVAMIW 75 (125)
Q Consensus 69 p~~al~l 75 (125)
.+..+..
T Consensus 169 ~i~~v~~ 175 (350)
T 3rc1_A 169 EIRSFAA 175 (350)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 5554443
No 43
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=24.93 E-value=1.9e+02 Score=20.73 Aligned_cols=56 Identities=7% Similarity=-0.121 Sum_probs=39.9
Q ss_pred HHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--CC-----------CCHHHHHHHhhcCceEEEE
Q 033187 19 GEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSGPVVAMI 74 (125)
Q Consensus 19 g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~lv~~~~sgp~~al~ 74 (125)
-+++....++|..|..-|.+.++.++++++....+ +. |.+..+.+.+.+|.+.-+.
T Consensus 76 ~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~~G~i~~v~ 144 (325)
T 2ho3_A 76 FAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADXQVLGAD 144 (325)
T ss_dssp HHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECTTTTCHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHHcCCEEEEEEhhhcChHHHHHHHHhhhcCccEEE
Confidence 46666778899999988999999999999877433 21 2344566667778766543
No 44
>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}
Probab=24.56 E-value=96 Score=22.96 Aligned_cols=66 Identities=14% Similarity=0.032 Sum_probs=44.8
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--CC-----------CCHHHHHHHhhcC---
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSG--- 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~lv~~~~sg--- 68 (125)
+++.-|+... -++.....++|..|..-|-+.++.++++++....+ +. |.+..+.+.+.+|
T Consensus 69 V~i~tp~~~H----~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG 144 (362)
T 3fhl_A 69 IVVNTPDNTH----YEYAGMALEAGKNVVVEKPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDILAKSLLG 144 (362)
T ss_dssp EEECSCGGGH----HHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHTTTTS
T ss_pred EEEeCChHHH----HHHHHHHHHCCCeEEEecCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHHcCCCC
Confidence 4555666543 36666777899999999999999999999977433 21 2344566677764
Q ss_pred ceEEEE
Q 033187 69 PVVAMI 74 (125)
Q Consensus 69 p~~al~ 74 (125)
.+..+.
T Consensus 145 ~i~~v~ 150 (362)
T 3fhl_A 145 RLVEYE 150 (362)
T ss_dssp SEEEEE
T ss_pred CeEEEE
Confidence 454443
No 45
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=24.54 E-value=87 Score=22.84 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=46.1
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--CC-----------CCHHHHHHHhhcC-ce
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSG-PV 70 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~lv~~~~sg-p~ 70 (125)
+++.-|.... -++.....++|..|..-|-+.++.++++++....+ +. |.+..+.+.+.+| .+
T Consensus 76 V~I~tP~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~gG~i 151 (312)
T 3o9z_A 76 LSIASPNHLH----YPQIRMALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYTVLQLRVHPSLLALKERLGQEKGA 151 (312)
T ss_dssp EEECSCGGGH----HHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEECCGGGGCHHHHHHHHHHHTCCSC
T ss_pred EEECCCchhh----HHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEEEeehhcCHHHHHHHHHHHcCCCE
Confidence 4555666543 46777778899999999999999999999877433 21 2344556666665 65
Q ss_pred EEEEE
Q 033187 71 VAMIW 75 (125)
Q Consensus 71 ~al~l 75 (125)
..+.+
T Consensus 152 ~~v~~ 156 (312)
T 3o9z_A 152 KDVVL 156 (312)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55443
No 46
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Probab=24.40 E-value=1.3e+02 Score=20.18 Aligned_cols=29 Identities=14% Similarity=0.279 Sum_probs=24.1
Q ss_pred hHHHHHHHHHcCCeEEEEEEeccCHHHHH
Q 033187 18 VGEIIIRFEKKGFSLKGLKLMTVDRPFAE 46 (125)
Q Consensus 18 ~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~ 46 (125)
..++.+.|+++||+++.......+++...
T Consensus 194 ~~~~~~~l~~aGF~~~~~~~~~~~~~~~~ 222 (243)
T 3bkw_A 194 VGTTLNALIRSGFAIEHVEEFCPTDAQIT 222 (243)
T ss_dssp HHHHHHHHHHTTCEEEEEEECCCCHHHHH
T ss_pred HHHHHHHHHHcCCEeeeeccCCCchHhhh
Confidence 57888999999999999998877776543
No 47
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=23.05 E-value=82 Score=23.06 Aligned_cols=67 Identities=9% Similarity=-0.058 Sum_probs=45.9
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--CC-----------CCHHHHHHHhhcC---
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSG--- 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~lv~~~~sg--- 68 (125)
+++--|.... -++.....++|..|..-|-+.++.++++++....+ +. |.+..+.+.+.+|
T Consensus 77 V~I~tP~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG 152 (318)
T 3oa2_A 77 VSICSPNYLH----YPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYNILQLRHHQAIIALKDKVAREKSP 152 (318)
T ss_dssp EEECSCGGGH----HHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHHHHHHHS-CS
T ss_pred EEECCCcHHH----HHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEEEEhhhcCHHHHHHHHHHhcCCCC
Confidence 4555666543 46777778899999999999999999999877433 21 2344566666665
Q ss_pred ceEEEEE
Q 033187 69 PVVAMIW 75 (125)
Q Consensus 69 p~~al~l 75 (125)
.+..+..
T Consensus 153 ~i~~v~~ 159 (318)
T 3oa2_A 153 HKYEVDL 159 (318)
T ss_dssp SCEEEEE
T ss_pred ceEEEEE
Confidence 5554443
No 48
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=23.01 E-value=89 Score=23.81 Aligned_cols=68 Identities=21% Similarity=0.213 Sum_probs=46.5
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC--C-----------CCHHHHHHHhhcC--
Q 033187 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS--K-----------PFFGSLIEYITSG-- 68 (125)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~--~-----------~~~~~lv~~~~sg-- 68 (125)
.++|.-|.... -++.....++|..|..-|-+.++.++++++....+. . |.+..+.+.+.+|
T Consensus 113 ~V~I~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~i 188 (417)
T 3v5n_A 113 AVAIVTPNHVH----YAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVLTHNYTGYPMVRQAREMIENGDI 188 (417)
T ss_dssp EEEECSCTTSH----HHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEEECGGGGSHHHHHHHHHHHTTTT
T ss_pred EEEECCCcHHH----HHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCCHHHHHHHHHHhcCCC
Confidence 34555666543 477777888999999999999999999999775432 1 2344556666665
Q ss_pred -ceEEEEE
Q 033187 69 -PVVAMIW 75 (125)
Q Consensus 69 -p~~al~l 75 (125)
.+..+..
T Consensus 189 G~i~~v~~ 196 (417)
T 3v5n_A 189 GAVRLVQM 196 (417)
T ss_dssp CSEEEEEE
T ss_pred CCeEEEEE
Confidence 4554443
No 49
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=22.96 E-value=44 Score=19.89 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=18.4
Q ss_pred EEEEcCc-ccccCchHHHHHHHHHcCCe
Q 033187 5 FIMIKPD-GVQRGLVGEIIIRFEKKGFS 31 (125)
Q Consensus 5 l~lIKPd-a~~~~~~g~Ii~~i~~~gf~ 31 (125)
-++|++| ...++.+-.+++.+.+.|+.
T Consensus 59 ~V~I~aD~~~~y~~vv~vmd~l~~aG~~ 86 (99)
T 2pfu_A 59 TIFFRADKTVDYETLMKVMDTLHQAGYL 86 (99)
T ss_dssp CEEEEECTTCCHHHHHHHHHHHHHTCCC
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHcCCC
Confidence 3677777 34445566778888888874
No 50
>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A
Probab=22.60 E-value=1.1e+02 Score=22.68 Aligned_cols=60 Identities=20% Similarity=0.169 Sum_probs=42.0
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--CC-----------CCHHHHHHHhhcC
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSG 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~lv~~~~sg 68 (125)
+++--|+... -++.....++|..|..-|-+.++.++++++....+ +. |.+..+.+.+.+|
T Consensus 69 V~i~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~~g 141 (358)
T 3gdo_A 69 VIVTTPSGLH----YEHTMACIQAGKHVVMEKPMTATAEEGETLKRAADEKGVLLSVYHNRRWDNDFLTIKKLISEG 141 (358)
T ss_dssp EEECSCTTTH----HHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHHTT
T ss_pred EEEcCCcHHH----HHHHHHHHHcCCeEEEecCCcCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHHhcC
Confidence 4455566543 46677778899999999999999999999877433 21 2344566667665
No 51
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=22.26 E-value=1.1e+02 Score=22.56 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=41.6
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--C-----------CCCHHHHHHHhhcC
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--S-----------KPFFGSLIEYITSG 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~-----------~~~~~~lv~~~~sg 68 (125)
+++.-|+... -++.....++|..|..-|.+.++.++++++....+ + .|.+..+.+.+.+|
T Consensus 70 V~i~tp~~~h----~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i~~g 142 (354)
T 3db2_A 70 VIITVPNDKH----AEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMIDTK 142 (354)
T ss_dssp EEECSCTTSH----HHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHHHTT
T ss_pred EEEeCChHHH----HHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHHhcC
Confidence 4455565433 36666777899999999999999999999876433 2 13345566677665
No 52
>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X
Probab=22.16 E-value=96 Score=22.58 Aligned_cols=67 Identities=12% Similarity=0.008 Sum_probs=44.8
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC--C-----------CCHHHHHHHhhc---C
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS--K-----------PFFGSLIEYITS---G 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~--~-----------~~~~~lv~~~~s---g 68 (125)
+++--|+... -++.....++|..|..-|.+.++.++++++....+. . |.+..+.+.+.+ |
T Consensus 70 V~i~tp~~~H----~~~~~~al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~k~~i~~g~iG 145 (334)
T 3ohs_X 70 AYVGTQHPQH----KAAVMLCLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLMEAIWTRFFPASEALRSVLAQGTLG 145 (334)
T ss_dssp EEECCCGGGH----HHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEEECGGGGSHHHHHHHHHHHHTTTC
T ss_pred EEECCCcHHH----HHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEEEEhHhcCHHHHHHHHHHhcCCCC
Confidence 3444566543 366667778999999999999999999999774332 1 234456666655 4
Q ss_pred ceEEEEE
Q 033187 69 PVVAMIW 75 (125)
Q Consensus 69 p~~al~l 75 (125)
.+..+..
T Consensus 146 ~i~~v~~ 152 (334)
T 3ohs_X 146 DLRVARA 152 (334)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 5554443
No 53
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=22.13 E-value=1.1e+02 Score=22.34 Aligned_cols=42 Identities=19% Similarity=0.055 Sum_probs=33.5
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHH
Q 033187 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHY 49 (125)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y 49 (125)
.++|.-|+... -++.....++|..|..-|-+.+|.++++++.
T Consensus 78 aV~I~tP~~~H----~~~~~~al~aGkhVl~EKPla~t~~ea~~l~ 119 (390)
T 4h3v_A 78 LVDVCTPGDSH----AEIAIAALEAGKHVLCEKPLANTVAEAEAMA 119 (390)
T ss_dssp EEEECSCGGGH----HHHHHHHHHTTCEEEEESSSCSSHHHHHHHH
T ss_pred EEEEeCChHHH----HHHHHHHHHcCCCceeecCcccchhHHHHHH
Confidence 34566677654 3666777789999999999999999999983
No 54
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=22.05 E-value=1.2e+02 Score=22.06 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=44.7
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--C-----------CCCHHHHHHHhhcC---
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--S-----------KPFFGSLIEYITSG--- 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~-----------~~~~~~lv~~~~sg--- 68 (125)
+++--|+... -++.....++|..|..-|.+.++.++++++....+ + .|.+..+.+.+.+|
T Consensus 68 V~i~tp~~~h----~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~G~iG 143 (344)
T 3ezy_A 68 VLVCSSTNTH----SELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKADVILFTGFNRRFDRNFKKLKEAVENGTIG 143 (344)
T ss_dssp EEECSCGGGH----HHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHHHTTTTS
T ss_pred EEEcCCCcch----HHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEEeecccCCHHHHHHHHHHHcCCCC
Confidence 3444555432 46666778899999999999999999999877433 2 13355566777764
Q ss_pred ceEEEEE
Q 033187 69 PVVAMIW 75 (125)
Q Consensus 69 p~~al~l 75 (125)
.+..+..
T Consensus 144 ~i~~~~~ 150 (344)
T 3ezy_A 144 KPHVLRI 150 (344)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 4544443
No 55
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=21.81 E-value=90 Score=17.49 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=14.9
Q ss_pred hHHHHHHHHHcCCeEEEE
Q 033187 18 VGEIIIRFEKKGFSLKGL 35 (125)
Q Consensus 18 ~g~Ii~~i~~~gf~I~~~ 35 (125)
..+++..|.+.||.+...
T Consensus 7 ~~elik~L~~~G~~~~r~ 24 (70)
T 1whz_A 7 PEEVARKLRRLGFVERMA 24 (70)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHCCCEEeCC
Confidence 368999999999998754
No 56
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=21.44 E-value=1.2e+02 Score=21.98 Aligned_cols=67 Identities=13% Similarity=0.062 Sum_probs=44.7
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC--C-----------CCHHHHHHHhhcC---
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS--K-----------PFFGSLIEYITSG--- 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~--~-----------~~~~~lv~~~~sg--- 68 (125)
+++--|+... -++.....++|..|..-|.+.++.++++++....+. . |.+..+.+.+.+|
T Consensus 71 V~i~tp~~~h----~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~~g~iG 146 (329)
T 3evn_A 71 IYVATINQDH----YKVAKAALLAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLASGEIG 146 (329)
T ss_dssp EEECSCGGGH----HHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHHTTTTC
T ss_pred EEECCCcHHH----HHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHhCCCCC
Confidence 3444555433 466677788999999999999999999998764332 1 2344566777665
Q ss_pred ceEEEEE
Q 033187 69 PVVAMIW 75 (125)
Q Consensus 69 p~~al~l 75 (125)
.+..+..
T Consensus 147 ~i~~v~~ 153 (329)
T 3evn_A 147 EVISISS 153 (329)
T ss_dssp SEEEEEE
T ss_pred CeEEEEE
Confidence 4555444
No 57
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=21.40 E-value=1.2e+02 Score=22.44 Aligned_cols=67 Identities=16% Similarity=0.061 Sum_probs=45.8
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcCC--------------CCHHHHHHHhhcC--
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSK--------------PFFGSLIEYITSG-- 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~~--------------~~~~~lv~~~~sg-- 68 (125)
+++.-|.... -++.....++|..|..-|-+.++.++++++....+.. |.+..+.+.+.+|
T Consensus 92 V~I~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~~~p~~~~~k~~i~~g~i 167 (361)
T 3u3x_A 92 IVSAAVSSER----AELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHFESPATVKAGELVAAGAI 167 (361)
T ss_dssp EEECCCHHHH----HHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHHTCHHHHHHHHHHHTTTT
T ss_pred EEEeCChHHH----HHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhhCCHHHHHHHHHHHcCCC
Confidence 4555666543 3666777889999999999999999999997754431 2233455666664
Q ss_pred -ceEEEEE
Q 033187 69 -PVVAMIW 75 (125)
Q Consensus 69 -p~~al~l 75 (125)
.+..+..
T Consensus 168 G~i~~~~~ 175 (361)
T 3u3x_A 168 GEVVHIVG 175 (361)
T ss_dssp SSEEEEEE
T ss_pred CCeEEEEE
Confidence 5555544
No 58
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=21.29 E-value=1.1e+02 Score=23.12 Aligned_cols=44 Identities=11% Similarity=0.085 Sum_probs=34.9
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHh
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDL 52 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~ 52 (125)
++|.-|+... .++.....++|..|..-|-+.++.++++++....
T Consensus 100 V~I~tp~~~H----~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a 143 (412)
T 4gqa_A 100 VDITSPNHLH----YTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAA 143 (412)
T ss_dssp EEECSCGGGH----HHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHH
T ss_pred EEECCCcHHH----HHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHH
Confidence 4555666554 4666777789999999999999999999997743
No 59
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=21.04 E-value=1.2e+02 Score=22.07 Aligned_cols=60 Identities=20% Similarity=0.353 Sum_probs=41.6
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhcC-------------CCCHHHHHHHhhcC
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSS-------------KPFFGSLIEYITSG 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~~-------------~~~~~~lv~~~~sg 68 (125)
+++--|+... -++.....++|..|..-|.+.++.++++++....+. .|.+..+.+.+.+|
T Consensus 67 V~i~tp~~~h----~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g 139 (331)
T 4hkt_A 67 VVICTPTDTH----ADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAIDDG 139 (331)
T ss_dssp EEECSCGGGH----HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHTT
T ss_pred EEEeCCchhH----HHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHHcC
Confidence 3444555433 466667788899999999999999999998774332 12345566777764
No 60
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=20.89 E-value=1.3e+02 Score=22.12 Aligned_cols=67 Identities=25% Similarity=0.239 Sum_probs=45.1
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--CC-----------CCHHHHHHHhhcC---
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSG--- 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~lv~~~~sg--- 68 (125)
+++--|+... .++.....++|..|..-|-+.++.++++++....+ +. |.+..+.+.+.+|
T Consensus 86 V~i~tp~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~~g~iG 161 (340)
T 1zh8_A 86 VDLTLPVELN----LPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEKTVYIAENFRHVPAFWKAKELVESGAIG 161 (340)
T ss_dssp EEECCCGGGH----HHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEEECGGGGCHHHHHHHHHHHTTTTS
T ss_pred EEEeCCchHH----HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCC
Confidence 4445565443 46667777899999999999999999999987543 21 2344566667664
Q ss_pred ceEEEEE
Q 033187 69 PVVAMIW 75 (125)
Q Consensus 69 p~~al~l 75 (125)
.+..+..
T Consensus 162 ~i~~v~~ 168 (340)
T 1zh8_A 162 DPVFMNW 168 (340)
T ss_dssp SEEEEEE
T ss_pred CcEEEEE
Confidence 5554443
No 61
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=20.83 E-value=1.4e+02 Score=17.62 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=23.2
Q ss_pred EEEEEcCcccccCchH-HHHHHHHHcCCeEEEEEE
Q 033187 4 TFIMIKPDGVQRGLVG-EIIIRFEKKGFSLKGLKL 37 (125)
Q Consensus 4 tl~lIKPda~~~~~~g-~Ii~~i~~~gf~I~~~k~ 37 (125)
-.+.+||....- -| .|...|...||.+...|.
T Consensus 7 V~V~lK~gVlDp--qG~av~~al~~LG~~v~~VR~ 39 (85)
T 1gtd_A 7 VRIRLKKGMLNP--EAATIERALALLGYEVEDTDT 39 (85)
T ss_dssp EEEEECTTSCCH--HHHHHHHHHHHHTCCCEEEEE
T ss_pred EEEEECCCCcCc--HHHHHHHHHHHcCCChheEEE
Confidence 457789998875 46 677778888987766643
No 62
>3dfe_A Putative PII-like signaling protein; YP_323533.1, structur genomics, joint center for structural genomics, JCSG; 2.35A {Anabaena variabilis atcc 29413} SCOP: d.58.5.0
Probab=20.52 E-value=66 Score=20.27 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=20.4
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEEE
Q 033187 3 QTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGL 35 (125)
Q Consensus 3 ~tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~ 35 (125)
+=-++|+|.-+.. +-+.|+.+-=.|++|...
T Consensus 8 kIeaIi~p~kl~~--V~~aL~~~Gv~G~TV~~v 38 (111)
T 3dfe_A 8 KLVIVTEKVLLKK--VAKIIEEAGATGYTVVDT 38 (111)
T ss_dssp EEEEEEEGGGHHH--HHHHHHHHTCSCCEEEEE
T ss_pred EEEEEECHHHHHH--HHHHHHHCCCCcEEEEec
Confidence 3457899987653 444444444568999986
No 63
>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A
Probab=20.11 E-value=1.1e+02 Score=22.60 Aligned_cols=67 Identities=10% Similarity=0.005 Sum_probs=45.0
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--CC-----------CCHHHHHHHhhc---C
Q 033187 5 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITS---G 68 (125)
Q Consensus 5 l~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~lv~~~~s---g 68 (125)
+++.-|.... -++.....++|..|..-|.+.++.++++++....+ +. |.+..+.+.+.+ |
T Consensus 69 V~i~tp~~~h----~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~~g~iG 144 (349)
T 3i23_A 69 ITICTPAHTH----YDLAKQAILAGKSVIVEKPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVEQGFLG 144 (349)
T ss_dssp EEECSCGGGH----HHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHHHTTTC
T ss_pred EEEeCCcHHH----HHHHHHHHHcCCEEEEECCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHhcCCCC
Confidence 4445566543 36666777899999999999999999999877433 21 224455566665 4
Q ss_pred ceEEEEE
Q 033187 69 PVVAMIW 75 (125)
Q Consensus 69 p~~al~l 75 (125)
.+..+..
T Consensus 145 ~i~~~~~ 151 (349)
T 3i23_A 145 EINEVET 151 (349)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 5555544
No 64
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=20.01 E-value=71 Score=23.38 Aligned_cols=61 Identities=13% Similarity=0.110 Sum_probs=42.9
Q ss_pred EEEEEcCcccccCchHHHHHHHHHcCCeEEEEEEeccCHHHHHHHHHHhc--CC-----------CCHHHHHHHhhcC
Q 033187 4 TFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLS--SK-----------PFFGSLIEYITSG 68 (125)
Q Consensus 4 tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~l~~~~a~~~y~~~~--~~-----------~~~~~lv~~~~sg 68 (125)
.++|--|+... -++.....++|..|..-|-+.++.++++++....+ +. |.+..+.+.+.+|
T Consensus 89 aV~I~tP~~~H----~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~~i~~G 162 (350)
T 4had_A 89 AVYIPLPTSQH----IEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNKVVVTEAYMITYSPVWQKVRSLIDEG 162 (350)
T ss_dssp EEEECSCGGGH----HHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHTCCEEECCGGGGSHHHHHHHHHHHTT
T ss_pred EEEEeCCCchh----HHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcCCceeEeeeeecCHHHHHhhHhhhcC
Confidence 34555666544 36666777899999999999999999999976433 21 2344566677765
Done!