Query 033188
Match_columns 125
No_of_seqs 126 out of 1116
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 17:58:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 99.3 5E-11 1.7E-15 93.3 13.3 95 17-112 5-105 (491)
2 2xut_A Proton/peptide symporte 99.0 5.3E-10 1.8E-14 88.2 8.2 93 21-113 8-106 (524)
3 3o7q_A L-fucose-proton symport 99.0 6.5E-09 2.2E-13 79.7 12.6 88 20-109 21-108 (438)
4 1pw4_A Glycerol-3-phosphate tr 98.9 3.8E-09 1.3E-13 81.1 7.8 85 24-111 27-111 (451)
5 3o7q_A L-fucose-proton symport 98.8 1.4E-07 4.8E-12 72.2 13.2 86 25-111 258-344 (438)
6 2cfq_A Lactose permease; trans 98.7 1E-08 3.5E-13 79.5 5.5 79 25-104 7-85 (417)
7 1pw4_A Glycerol-3-phosphate tr 98.5 3.2E-06 1.1E-10 64.7 13.8 86 25-111 252-340 (451)
8 2gfp_A EMRD, multidrug resista 98.4 9.3E-07 3.2E-11 66.6 8.5 76 34-111 9-84 (375)
9 4gc0_A D-xylose-proton symport 98.3 2.7E-06 9.3E-11 66.1 8.0 48 63-111 57-104 (491)
10 2cfq_A Lactose permease; trans 97.9 9.9E-05 3.4E-09 56.9 11.0 73 38-111 233-308 (417)
11 4gc0_A D-xylose-proton symport 97.7 0.00044 1.5E-08 53.6 11.1 70 39-110 291-360 (491)
12 2gfp_A EMRD, multidrug resista 97.5 0.00011 3.8E-09 55.1 4.5 65 26-91 200-264 (375)
13 4aps_A DI-OR tripeptide H+ sym 97.2 0.00013 4.5E-09 56.6 2.7 76 34-110 292-372 (491)
14 2xut_A Proton/peptide symporte 74.7 24 0.00082 26.9 9.2 43 66-109 153-195 (524)
15 2l4v_A Cystatin; protease inhi 52.9 7.4 0.00025 25.7 2.1 18 1-18 1-18 (135)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.29 E-value=5e-11 Score=93.25 Aligned_cols=95 Identities=20% Similarity=0.257 Sum_probs=83.1
Q ss_pred CccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-----cCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccc
Q 033188 17 PKINYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSV-----FNMKNITAATIINIFNGTANFGTMIGAYLCDT-YFG 90 (125)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~-----lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr-~lG 90 (125)
++..++++|.++......+++...+|++..+++.|++++ +|+++.+.+...+.+.....++.+++|+++|| + |
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~-g 83 (491)
T 4aps_A 5 GKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII-G 83 (491)
T ss_dssp ------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-C
T ss_pred chhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-c
Confidence 345566788888888899999999999999999999988 99999999999999999999999999999999 7 9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 033188 91 RYNTLGFATVASFLVLASALEQ 112 (125)
Q Consensus 91 R~~~i~~~~~~~~lg~~l~~~~ 112 (125)
||+++..+.++..++.++.+..
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~~ 105 (491)
T 4aps_A 84 ARPAVFWGGVLIMLGHIVLALP 105 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred chHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998887654
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.04 E-value=5.3e-10 Score=88.22 Aligned_cols=93 Identities=20% Similarity=0.346 Sum_probs=79.2
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC------CCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHH
Q 033188 21 YRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFN------MKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNT 94 (125)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg------~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~ 94 (125)
++++|.++......++....+|++..+++.|+++++| +++.+...+.+.+.....++.+++|+++||++|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~ 87 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNT 87 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 3455677777788889999999999999999999999 9999999999999999999999999999994499999
Q ss_pred HHHHHHHHHHHHHHHhhcc
Q 033188 95 LGFATVASFLVLASALEQR 113 (125)
Q Consensus 95 i~~~~~~~~lg~~l~~~~~ 113 (125)
+..+.++..++.++.+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~ 106 (524)
T 2xut_A 88 ILWLSLIYCVGHAFLAIFE 106 (524)
T ss_dssp HHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999988888776543
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.00 E-value=6.5e-09 Score=79.69 Aligned_cols=88 Identities=10% Similarity=-0.104 Sum_probs=69.3
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHH
Q 033188 20 NYRGWKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFAT 99 (125)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~ 99 (125)
.+++++.+.......+.....++.....++. +.+++|+++.+...+.+.+.....++.+++|+++||+ |||+++.++.
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~-g~r~~l~~~~ 98 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQ-FQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKL-SYKAGIITGL 98 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHS-CHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHh-cchHHHHHHH
Confidence 3345555555555555555555555444444 5688999999999999999999999999999999997 9999999999
Q ss_pred HHHHHHHHHH
Q 033188 100 VASFLVLASA 109 (125)
Q Consensus 100 ~~~~lg~~l~ 109 (125)
++..++.++.
T Consensus 99 ~~~~~~~~~~ 108 (438)
T 3o7q_A 99 FLYALGAALF 108 (438)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.90 E-value=3.8e-09 Score=81.13 Aligned_cols=85 Identities=9% Similarity=-0.091 Sum_probs=64.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 033188 24 WKAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASF 103 (125)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~ 103 (125)
|+.+.......+......+.....++.+. +++ .++.+.+.+.+.+.....++.+++|+++||+ |||+++.++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~-g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRS-NPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhc-CchHHHHHHHHHHH
Confidence 33333333444444444444444555554 566 8999999999999999999999999999997 99999999999999
Q ss_pred HHHHHHhh
Q 033188 104 LVLASALE 111 (125)
Q Consensus 104 lg~~l~~~ 111 (125)
++.++.+.
T Consensus 104 ~~~~~~~~ 111 (451)
T 1pw4_A 104 AVMLFMGF 111 (451)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99888765
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.79 E-value=1.4e-07 Score=72.21 Aligned_cols=86 Identities=10% Similarity=0.057 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH-hHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHH
Q 033188 25 KAMPFIIGNETFEKLGAVGTLANLLIY-LTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASF 103 (125)
Q Consensus 25 ~~~~~~~~~~~~~~~~~y~~~~~l~~y-l~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~ 103 (125)
|.++......++....+++...+++.| +++.+|+++.++............++.+++|+++||+ |||+.+..+.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~-~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRF-APHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence 345555555556666777888899999 8888899999999999999999999999999999996 99999999998888
Q ss_pred HHHHHHhh
Q 033188 104 LVLASALE 111 (125)
Q Consensus 104 lg~~l~~~ 111 (125)
++.++...
T Consensus 337 ~~~~~~~~ 344 (438)
T 3o7q_A 337 ALCLISAF 344 (438)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87766653
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=98.74 E-value=1e-08 Score=79.49 Aligned_cols=79 Identities=10% Similarity=-0.025 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHH
Q 033188 25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFL 104 (125)
Q Consensus 25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~l 104 (125)
|..+......+.....+.....+++.|+++++|+++.+...+.+.+.....++.+++|+++||+ ||||++..+.++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~-Grr~~l~~~~~~~~~ 85 (417)
T 2cfq_A 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKL-GLRKYLLWIITGMLV 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTS-TTCCHHHHHHHHTTS
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cchHHHHHHHHHHHH
Confidence 3444444444444555556667889999888999999999999999999999999999999997 999999988776543
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=98.52 E-value=3.2e-06 Score=64.74 Aligned_cols=86 Identities=16% Similarity=0.137 Sum_probs=71.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc--chHHHHHHHHHHH
Q 033188 25 KAMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYF--GRYNTLGFATVAS 102 (125)
Q Consensus 25 ~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~l--GR~~~i~~~~~~~ 102 (125)
|.++......++....+++...+++.|+++.+|+++.++............++.+++|+++|| + |||+.+..+.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 455666666667778888888999999988899999999999999999999999999999999 6 9999988887766
Q ss_pred H-HHHHHHhh
Q 033188 103 F-LVLASALE 111 (125)
Q Consensus 103 ~-lg~~l~~~ 111 (125)
. ++.+++..
T Consensus 331 ~~~~~~~~~~ 340 (451)
T 1pw4_A 331 VTIATIVYWM 340 (451)
T ss_dssp HHHHHHHTTS
T ss_pred HHHHHHHHHH
Confidence 6 66666544
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.43 E-value=9.3e-07 Score=66.63 Aligned_cols=76 Identities=9% Similarity=0.085 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188 34 ETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE 111 (125)
Q Consensus 34 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~ 111 (125)
.+............++.+ .+++|.++.+.....+.+.....++.++.|+++||+ ||||++..+.+...++.++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRV-GRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS-CCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchhHHHHHHHHHHHHHHHHH
Confidence 333344444444445554 478999999999999999999999999999999997 9999999999988888777653
No 9
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.26 E-value=2.7e-06 Score=66.13 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188 63 AATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE 111 (125)
Q Consensus 63 a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~ 111 (125)
.+++.+.+.....++++++|+++||+ |||+++.++.+++.++.++.+.
T Consensus 57 ~g~~~s~~~~G~~iG~~~~G~laDr~-GRk~~l~~~~~l~~i~~i~~a~ 104 (491)
T 4gc0_A 57 LGFCVASALIGCIIGGALGGYCSNRF-GRRDSLKIAAVLFFISGVGSAW 104 (491)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888899999999999997 9999999999999999887763
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=97.95 E-value=9.9e-05 Score=56.88 Aligned_cols=73 Identities=10% Similarity=-0.047 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhHhhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHhh
Q 033188 38 KLGAVGTLANLLIYLTSVFNMK---NITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASALE 111 (125)
Q Consensus 38 ~~~~y~~~~~l~~yl~~~lg~~---~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~~ 111 (125)
...++.....++.|+.+.++.. .........+......++.+++|+++||+ |||+++..+.++..++.++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~-g~~~~l~~~~~~~~~~~~~~~~ 308 (417)
T 2cfq_A 233 SCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRI-GGKNALLLAGTIMSVRIIGSSF 308 (417)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455778876655432 22334444555556677889999999996 9999999888887777666543
No 11
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=97.70 E-value=0.00044 Score=53.57 Aligned_cols=70 Identities=13% Similarity=-0.037 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHh
Q 033188 39 LGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASAL 110 (125)
Q Consensus 39 ~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~~ 110 (125)
.+++.+..+.+ ++.+..+.+..+..............+.++++++.||+ |||+.+..+.....++...+.
T Consensus 291 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~-Grr~~~~~~~~~~~~~~~~l~ 360 (491)
T 4gc0_A 291 VGINVVLYYAP-EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKF-GRKPLQIIGALGMAIGMFSLG 360 (491)
T ss_dssp TCHHHHHHHHH-HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhcch-HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhh-cCcchhccchHHHHHHHHHHH
Confidence 33444444443 44466788888888777888888899999999999996 999999988887777666553
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=97.46 E-value=0.00011 Score=55.13 Aligned_cols=65 Identities=11% Similarity=0.055 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccch
Q 033188 26 AMPFIIGNETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGR 91 (125)
Q Consensus 26 ~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR 91 (125)
..+......++....+++...+++.|+++.+|+++.++............++.++.|+++||+ ||
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~-~~ 264 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF-ST 264 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH-HH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 444455555566667777777888888877899999999999999999999999999999996 87
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=97.24 E-value=0.00013 Score=56.61 Aligned_cols=76 Identities=7% Similarity=-0.117 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHH-----HHHHHHHHHHHH
Q 033188 34 ETFEKLGAVGTLANLLIYLTSVFNMKNITAATIINIFNGTANFGTMIGAYLCDTYFGRYNTLG-----FATVASFLVLAS 108 (125)
Q Consensus 34 ~~~~~~~~y~~~~~l~~yl~~~lg~~~~~a~~~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~-----~~~~~~~lg~~l 108 (125)
.......+.....+++.|..+.++.+..++............++.++.|+++||+ |||+... .+.++..++.++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~-~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 292 AVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAW-KKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp HHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHT-TTC---CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHH-hccCCCchHHHHHHHHHHHHHHHH
Confidence 3333444555666778888877887766666677777788888899999999996 9986544 666666666555
Q ss_pred Hh
Q 033188 109 AL 110 (125)
Q Consensus 109 ~~ 110 (125)
+.
T Consensus 371 ~~ 372 (491)
T 4aps_A 371 MA 372 (491)
T ss_dssp TH
T ss_pred HH
Confidence 43
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=74.71 E-value=24 Score=26.92 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Q 033188 66 IINIFNGTANFGTMIGAYLCDTYFGRYNTLGFATVASFLVLASA 109 (125)
Q Consensus 66 ~~~~~~~~~~~~~~l~G~laDr~lGR~~~i~~~~~~~~lg~~l~ 109 (125)
..........++++++|++.|.. |-+..+.+..+...++.++.
T Consensus 153 ~~~~~~~g~~~g~~~~~~l~~~~-g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 153 FYFTINFGSFFASLSMPLLLKNF-GAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHHHHHHHTSTHHHHTS-CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHH
Confidence 44556667778899999999996 98888777776666655543
No 15
>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}
Probab=52.90 E-value=7.4 Score=25.75 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.5
Q ss_pred CcccccCccCCCCCCCCc
Q 033188 1 MELENVKKTVGNDHDEPK 18 (125)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (125)
|+++.||||++.+..++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (135)
T 2l4v_A 1 MADEQPKKPVPAAEEAPA 18 (135)
T ss_dssp CCCSSSSCCCCCCCCCCC
T ss_pred CCcccCCCCCCccccCcc
Confidence 899999999998877665
Done!