BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033189
(125 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1101 PE=3 SV=1
Length = 108
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 95 ISLAVLGSVSDYCAHHAHCTVMIVKRP 121
+S +LGSV +Y HHAHC V +V P
Sbjct: 81 LSEILLGSVGNYVFHHAHCCVFVVPTP 107
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0531 PE=3 SV=1
Length = 170
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 19/24 (79%)
Query: 99 VLGSVSDYCAHHAHCTVMIVKRPK 122
+LGSV++ +AHC V++VK+PK
Sbjct: 145 LLGSVAERVIKNAHCPVLVVKKPK 168
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1388 PE=3 SV=1
Length = 154
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 11/65 (16%)
Query: 55 IGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEICSSKSVMISLAVLGSVSDYCAHHAHCT 114
+G G ++ + D+DL + R ++ E+ LGSVS Y HH C+
Sbjct: 100 VGEPGRWIRDMAKNWDADLVVLGRRGLKGLAEV-----------FLGSVSSYVIHHVQCS 148
Query: 115 VMIVK 119
V+IV+
Sbjct: 149 VLIVQ 153
>sp|O06188|Y2624_MYCTU Universal stress protein Rv2624c/MT2699 OS=Mycobacterium
tuberculosis GN=Rv2624c PE=1 SV=1
Length = 272
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 60/134 (44%), Gaps = 24/134 (17%)
Query: 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLV--IVHARPSPSAVIGLAGHG--- 61
+T++VGID S + A W +D + + P +LV I PSP H
Sbjct: 10 KTIIVGIDGSHAAITAALWGVDEAISRAV---PLRLVSVIKPTHPSPDDYDRDLAHAERS 66
Query: 62 ------AVEV---LPHVDSDLKKIAAR--LVEEAK--EICSSKSVMISL---AVLGSVSD 105
AVE L +++D+ + A LVE ++ E+ SV I ++LGS +
Sbjct: 67 LREAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTAT 126
Query: 106 YCAHHAHCTVMIVK 119
A AHC V +++
Sbjct: 127 ELAEKAHCPVAVMR 140
>sp|Q836H7|DAPEL_ENTFA N-acetyldiaminopimelate deacetylase OS=Enterococcus faecalis
(strain ATCC 700802 / V583) GN=EF_1134 PE=3 SV=2
Length = 378
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 11/106 (10%)
Query: 24 QWTLDHFFANSTVNPPFKLVIVHAR------PSPSAVIGLAGHGAVEVLPHVDSDLKKIA 77
+W D F+A VNP + + R + I L G G PH +D+ A
Sbjct: 147 EWLPDEFYA-LHVNPDLPVGTISTRVGTLFAATCEVNITLKGKGGHAAFPHQANDMVLAA 205
Query: 78 ARLVEEAKEICSSKSVMISLAVLGSVSDYCAHHAHCTVMIVKRPKT 123
L+++A+ I S V+G+V + HA ++ T
Sbjct: 206 TNLIQQAQTIVSRNVD----PVVGAVVTFGTFHAGTACNVIAEEAT 247
>sp|P0A504|CTPE_MYCTU Probable cation-transporting ATPase E OS=Mycobacterium tuberculosis
GN=ctpE PE=3 SV=1
Length = 797
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 26 TLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDL 73
TLD + + V P K IVHA S + + G G +VL D+D+
Sbjct: 502 TLDSYTSFGRVRPDQKRAIVHALQSHGHTVAMTGDGVNDVLALKDADI 549
>sp|P0A505|CTPE_MYCBO Probable cation-transporting ATPase E OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=ctpE PE=3 SV=1
Length = 797
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 26 TLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDL 73
TLD + + V P K IVHA S + + G G +VL D+D+
Sbjct: 502 TLDSYTSFGRVRPDQKRAIVHALQSHGHTVAMTGDGVNDVLALKDADI 549
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 100 LGSVSDYCAHHAHCTVMIVKR 120
+G+VS +C HA C VM +KR
Sbjct: 143 VGTVSAFCVKHAECPVMTIKR 163
>sp|Q67K94|GCP_SYMTH Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp
OS=Symbiobacterium thermophilum (strain T / IAM 14863)
GN=gcp PE=3 SV=1
Length = 341
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 8 TMVVGIDDSEHSTYALQWTL-------DHFFANSTVNPP--FKLVIVHARPSPSAVIGLA 58
T++VG+ ++ + L L H +AN V PP F LV + + +I +A
Sbjct: 93 TLLVGLSAAKALAFGLDKPLIGVNHLQGHIYANFLVEPPPEFPLVCLVVSGGHTDLIYMA 152
Query: 59 GHGAVEVLPHVDSD 72
GHG +E+L D
Sbjct: 153 GHGRMELLGRTLDD 166
>sp|O05265|YULF_BACSU Uncharacterized oxidoreductase YulF OS=Bacillus subtilis (strain
168) GN=yulF PE=3 SV=2
Length = 328
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 24 QWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83
W D F ++ F+L V++R + A A H A H SDL+++AA +
Sbjct: 10 NWITDRFLESAADIEDFQLTAVYSRSAERAGEFAAKHNAA----HAFSDLQEMAASDCFD 65
Query: 84 AKEICSSKSVMISLAVL 100
A I S ++ AVL
Sbjct: 66 AVYIASPNALHKEQAVL 82
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.129 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,292,081
Number of Sequences: 539616
Number of extensions: 1572986
Number of successful extensions: 4679
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 4672
Number of HSP's gapped (non-prelim): 16
length of query: 125
length of database: 191,569,459
effective HSP length: 92
effective length of query: 33
effective length of database: 141,924,787
effective search space: 4683517971
effective search space used: 4683517971
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)