Query 033189
Match_columns 125
No_of_seqs 121 out of 1101
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 10:54:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033189.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033189hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15456 universal stress prot 99.8 3.9E-20 8.4E-25 118.6 12.0 106 5-119 1-142 (142)
2 PRK15005 universal stress prot 99.8 5.6E-20 1.2E-24 117.8 12.0 108 5-119 1-144 (144)
3 PRK09982 universal stress prot 99.8 8.2E-20 1.8E-24 117.3 9.9 110 4-123 1-142 (142)
4 cd01989 STK_N The N-terminal d 99.8 1.1E-18 2.4E-23 112.1 10.4 106 8-120 1-145 (146)
5 PRK15118 universal stress glob 99.8 7.6E-19 1.7E-23 112.7 9.6 41 4-49 1-41 (144)
6 PF00582 Usp: Universal stress 99.7 7.3E-18 1.6E-22 105.9 7.9 45 5-54 1-45 (140)
7 PRK10116 universal stress prot 99.7 1.6E-17 3.5E-22 106.2 9.1 109 4-123 1-142 (142)
8 PRK11175 universal stress prot 99.7 2.5E-17 5.3E-22 117.3 10.1 111 4-121 1-147 (305)
9 cd01988 Na_H_Antiporter_C The 99.7 3.1E-16 6.8E-21 98.6 11.3 96 8-119 1-132 (132)
10 cd01987 USP_OKCHK USP domain i 99.7 3.7E-16 8E-21 97.7 7.5 93 8-119 1-124 (124)
11 PRK11175 universal stress prot 99.6 7.5E-14 1.6E-18 99.4 11.4 114 5-122 151-302 (305)
12 COG0589 UspA Universal stress 99.5 8.2E-13 1.8E-17 84.6 12.9 113 4-121 3-153 (154)
13 cd00293 USP_Like Usp: Universa 99.5 1.8E-12 3.9E-17 80.4 11.6 95 8-118 1-130 (130)
14 PRK12652 putative monovalent c 99.3 1.8E-10 3.8E-15 84.0 12.3 102 3-121 2-122 (357)
15 PRK10490 sensor protein KdpD; 98.2 1.7E-05 3.7E-10 64.4 9.5 41 5-50 249-289 (895)
16 cd01984 AANH_like Adenine nucl 97.9 0.00011 2.3E-09 42.9 6.7 73 9-117 1-85 (86)
17 COG2205 KdpD Osmosensitive K+ 97.8 0.00018 3.8E-09 57.3 8.9 98 6-122 248-376 (890)
18 PF01171 ATP_bind_3: PP-loop f 86.1 3.3 7.1E-05 27.4 5.6 38 8-50 1-38 (182)
19 TIGR02432 lysidine_TilS_N tRNA 85.9 2.6 5.6E-05 27.9 5.1 38 8-50 1-38 (189)
20 PLN03159 cation/H(+) antiporte 85.1 4.5 9.8E-05 33.5 6.9 43 7-52 459-501 (832)
21 PLN03159 cation/H(+) antiporte 82.2 17 0.00036 30.3 9.0 41 6-51 630-670 (832)
22 PRK06029 3-octaprenyl-4-hydrox 81.6 4.6 0.0001 27.1 4.8 37 6-47 1-37 (185)
23 cd01992 PP-ATPase N-terminal d 79.1 7.2 0.00016 25.5 5.1 38 8-50 1-38 (185)
24 PRK05920 aromatic acid decarbo 77.1 8.8 0.00019 26.3 5.1 37 5-47 2-38 (204)
25 PRK07313 phosphopantothenoylcy 76.7 8.8 0.00019 25.7 5.0 36 6-47 1-36 (182)
26 cd03364 TOPRIM_DnaG_primases T 75.1 12 0.00027 21.0 5.4 29 6-35 43-71 (79)
27 PF02441 Flavoprotein: Flavopr 74.4 6.8 0.00015 24.4 3.8 35 7-47 1-35 (129)
28 TIGR02852 spore_dpaB dipicolin 72.1 13 0.00028 25.1 4.9 35 7-47 1-36 (187)
29 PF13662 Toprim_4: Toprim doma 71.4 9.9 0.00022 21.5 3.8 28 6-33 46-73 (81)
30 TIGR00646 MG010 DNA primase-re 68.2 23 0.00049 24.6 5.5 35 6-45 154-188 (218)
31 TIGR02113 coaC_strep phosphopa 67.7 17 0.00038 24.1 4.8 35 7-47 1-35 (177)
32 PF02878 PGM_PMM_I: Phosphoglu 67.4 14 0.00031 23.1 4.2 41 6-51 40-80 (137)
33 PRK10696 tRNA 2-thiocytidine b 63.8 33 0.00071 24.1 5.8 41 6-49 29-69 (258)
34 PRK08305 spoVFB dipicolinate s 63.0 26 0.00057 23.8 5.0 35 6-46 5-40 (196)
35 PHA02031 putative DnaG-like pr 60.5 29 0.00063 24.8 5.0 36 7-47 207-242 (266)
36 COG3360 Uncharacterized conser 58.8 31 0.00066 19.3 4.5 44 1-50 1-45 (71)
37 PRK05579 bifunctional phosphop 56.6 41 0.00088 25.5 5.5 38 4-47 4-41 (399)
38 COG0037 MesJ tRNA(Ile)-lysidin 55.8 38 0.00082 24.0 5.1 39 7-52 22-60 (298)
39 smart00493 TOPRIM topoisomeras 55.5 28 0.0006 19.0 3.6 26 7-32 48-73 (76)
40 TIGR00421 ubiX_pad polyprenyl 55.1 32 0.00069 23.0 4.3 34 8-47 1-34 (181)
41 PRK10660 tilS tRNA(Ile)-lysidi 53.2 56 0.0012 25.0 5.9 40 6-49 15-54 (436)
42 PF01012 ETF: Electron transfe 51.1 50 0.0011 21.2 4.7 37 8-49 1-42 (164)
43 cd01993 Alpha_ANH_like_II This 49.5 69 0.0015 20.7 5.5 40 8-50 1-40 (185)
44 TIGR00521 coaBC_dfp phosphopan 47.1 58 0.0013 24.6 5.0 36 5-46 2-37 (390)
45 PF13362 Toprim_3: Toprim doma 46.9 56 0.0012 18.9 5.0 30 5-35 40-71 (96)
46 PF09967 DUF2201: VWA-like dom 46.7 57 0.0012 20.3 4.3 34 9-47 1-39 (126)
47 cd01029 TOPRIM_primases TOPRIM 46.4 50 0.0011 18.2 5.4 27 7-33 44-70 (79)
48 PRK10799 metal-binding protein 46.3 33 0.00072 24.0 3.5 14 5-18 34-47 (247)
49 TIGR00486 YbgI_SA1388 dinuclea 45.8 44 0.00095 23.4 4.0 15 4-18 34-48 (249)
50 PRK13982 bifunctional SbtC-lik 45.8 60 0.0013 25.3 5.0 36 6-47 70-105 (475)
51 PF01751 Toprim: Toprim domain 45.3 56 0.0012 19.1 4.0 29 5-33 59-87 (100)
52 COG2086 FixA Electron transfer 45.2 34 0.00074 24.4 3.4 36 12-52 32-68 (260)
53 PF01784 NIF3: NIF3 (NGG1p int 39.6 34 0.00075 23.8 2.7 31 5-47 31-61 (241)
54 PF13155 Toprim_2: Toprim-like 36.8 79 0.0017 18.1 3.7 28 6-33 47-74 (96)
55 TIGR02699 archaeo_AfpA archaeo 36.8 1.1E+02 0.0023 20.4 4.6 34 8-46 1-35 (174)
56 PRK12342 hypothetical protein; 36.4 73 0.0016 22.6 3.9 33 13-51 31-63 (254)
57 COG0452 Dfp Phosphopantothenoy 34.5 1E+02 0.0022 23.4 4.7 38 6-49 4-41 (392)
58 PF14582 Metallophos_3: Metall 33.6 33 0.00071 24.2 1.8 28 5-33 4-31 (255)
59 PLN02496 probable phosphopanto 33.4 1.5E+02 0.0033 20.4 5.0 38 4-48 17-54 (209)
60 PF14097 SpoVAE: Stage V sporu 32.9 65 0.0014 21.6 3.0 24 8-31 1-24 (180)
61 TIGR01391 dnaG DNA primase, ca 31.0 1.6E+02 0.0035 22.4 5.3 28 7-35 301-328 (415)
62 KOG1552 Predicted alpha/beta h 30.1 36 0.00079 24.2 1.6 16 108-123 188-203 (258)
63 TIGR03671 cca_archaeal CCA-add 29.9 1.8E+02 0.0038 22.4 5.2 52 70-121 16-69 (408)
64 COG3864 Uncharacterized protei 29.2 1.6E+02 0.0035 22.0 4.7 39 7-50 262-305 (396)
65 PF08915 tRNA-Thr_ED: Archaea- 28.0 1.7E+02 0.0037 18.8 5.5 64 19-103 56-119 (138)
66 COG0163 UbiX 3-polyprenyl-4-hy 27.9 2E+02 0.0043 19.6 4.7 36 6-47 2-37 (191)
67 TIGR00169 leuB 3-isopropylmala 27.0 1.1E+02 0.0023 22.9 3.6 28 17-49 163-190 (349)
68 TIGR02700 flavo_MJ0208 archaeo 27.0 1.7E+02 0.0038 20.2 4.6 36 8-47 1-37 (234)
69 TIGR02088 LEU3_arch isopropylm 26.7 1.1E+02 0.0023 22.6 3.6 28 16-48 140-167 (322)
70 KOG2584 Dihydroorotase and rel 26.7 74 0.0016 24.8 2.8 28 20-52 232-259 (522)
71 PRK08194 tartrate dehydrogenas 26.2 1.1E+02 0.0024 22.9 3.6 28 17-49 161-188 (352)
72 PF08874 DUF1835: Domain of un 25.9 1.6E+02 0.0035 17.8 5.5 38 6-48 86-123 (124)
73 cd02978 KaiB_like KaiB-like fa 24.1 1.5E+02 0.0032 16.8 5.2 42 9-52 4-46 (72)
74 PRK00772 3-isopropylmalate deh 23.9 1.4E+02 0.0029 22.5 3.7 29 17-50 166-194 (358)
75 PRK08417 dihydroorotase; Provi 23.7 84 0.0018 23.4 2.7 25 20-49 181-205 (386)
76 PRK05253 sulfate adenylyltrans 23.6 2.4E+02 0.0053 20.5 4.9 40 6-50 27-66 (301)
77 cd04795 SIS SIS domain. SIS (S 23.3 1.4E+02 0.0031 16.3 3.6 34 6-45 47-80 (87)
78 COG0275 Predicted S-adenosylme 22.9 1.9E+02 0.0042 21.3 4.2 32 9-48 50-81 (314)
79 PRK12454 carbamate kinase-like 22.8 2.7E+02 0.0059 20.5 5.0 39 6-50 2-55 (313)
80 PRK12352 putative carbamate ki 22.7 1.9E+02 0.0042 21.2 4.3 41 6-51 2-56 (316)
81 PLN02329 3-isopropylmalate deh 22.4 1.6E+02 0.0034 22.6 3.8 28 17-49 211-238 (409)
82 PRK10886 DnaA initiator-associ 22.1 2.3E+02 0.005 19.2 4.3 40 5-50 108-147 (196)
83 cd05403 NT_KNTase_like Nucleot 21.9 71 0.0015 17.8 1.6 28 96-123 20-48 (93)
84 PLN00200 argininosuccinate syn 21.9 3.7E+02 0.0081 20.6 5.8 39 4-50 3-41 (404)
85 PRK08997 isocitrate dehydrogen 21.6 1.5E+02 0.0033 22.0 3.5 29 17-49 147-175 (334)
86 PRK14316 glmM phosphoglucosami 21.6 2E+02 0.0043 22.0 4.3 41 7-52 41-81 (448)
87 PF00180 Iso_dh: Isocitrate/is 21.2 2E+02 0.0043 21.4 4.1 29 17-49 160-188 (348)
88 PRK13820 argininosuccinate syn 21.2 3.4E+02 0.0074 20.7 5.4 39 5-50 1-39 (394)
89 PRK12686 carbamate kinase; Rev 21.0 1.9E+02 0.0041 21.3 3.9 41 5-51 1-54 (312)
90 cd01027 TOPRIM_RNase_M5_like T 20.7 1.8E+02 0.0039 16.5 3.9 27 6-32 45-71 (81)
91 PRK09542 manB phosphomannomuta 20.5 2.2E+02 0.0047 21.8 4.3 41 7-52 36-76 (445)
92 PLN00096 isocitrate dehydrogen 20.5 2.2E+02 0.0049 21.7 4.2 34 12-50 171-204 (393)
93 TIGR02089 TTC tartrate dehydro 20.2 1.6E+02 0.0036 22.0 3.5 28 17-49 164-191 (352)
94 KOG2984 Predicted hydrolase [G 20.2 95 0.0021 21.8 2.1 29 95-123 199-227 (277)
No 1
>PRK15456 universal stress protein UspG; Provisional
Probab=99.85 E-value=3.9e-20 Score=118.59 Aligned_cols=106 Identities=18% Similarity=0.198 Sum_probs=72.5
Q ss_pred CCCeEEEEeCCCh--HHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSE--HSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVE 82 (125)
Q Consensus 5 ~~~~IlvavD~s~--~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (125)
||++||+|+|||+ .+.+|+++|..+++.. + +++++||+++..... ..... ...+.+.+...+..++.++
T Consensus 1 m~~~ILv~vD~S~~~~s~~al~~A~~la~~~----~--~l~llhv~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~l~ 71 (142)
T PRK15456 1 MYKTIIMPVDVFEMELSDKAVRHAEFLAQDD----G--VIHLLHVLPGSASLS-LHRFA--ADVRRFEEHLQHEAEERLQ 71 (142)
T ss_pred CCccEEEeccCCchhHHHHHHHHHHHHHhcC----C--eEEEEEEecCccccc-ccccc--cchhhHHHHHHHHHHHHHH
Confidence 5899999999994 8999999999999864 5 999999998753211 11100 1112233444444445555
Q ss_pred HHHHHhhhcCc------------------------c----------cceeeeCcchHHHhccCCccEEEEc
Q 033189 83 EAKEICSSKSV------------------------M----------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 83 ~~~~~~~~~~~------------------------~----------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
.+.+.+...+. + +.++++||++++|+++++||||+||
T Consensus 72 ~~~~~~~~~~~~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~llGS~a~~v~~~a~~pVLvV~ 142 (142)
T PRK15456 72 TMVSHFTIDPSRIKQHVRFGSVRDEVNELAEELGADVVVIGSRNPSISTHLLGSNASSVIRHANLPVLVVR 142 (142)
T ss_pred HHHHHhCCCCcceEEEEcCCChHHHHHHHHhhcCCCEEEEcCCCCCccceecCccHHHHHHcCCCCEEEeC
Confidence 44433321111 0 6678999999999999999999996
No 2
>PRK15005 universal stress protein F; Provisional
Probab=99.84 E-value=5.6e-20 Score=117.80 Aligned_cols=108 Identities=24% Similarity=0.272 Sum_probs=70.2
Q ss_pred CCCeEEEEeCCChH--HHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHH
Q 033189 5 ETQTMVVGIDDSEH--STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVE 82 (125)
Q Consensus 5 ~~~~IlvavD~s~~--s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (125)
||++||+|+|+|+. +.+|++||..+|+.. + + +++++||+++...+.......... ... .+..++..++.++
T Consensus 1 m~~~ILv~~D~s~~~~~~~a~~~a~~la~~~-~--~--~l~ll~v~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~ 73 (144)
T PRK15005 1 MNRTILVPIDISDSELTQRVISHVEAEAKID-D--A--EVHFLTVIPSLPYYASLGLAYSAE-LPA-MDDLKAEAKSQLE 73 (144)
T ss_pred CCccEEEecCCCchhHHHHHHHHHHHHHhcc-C--C--eEEEEEEEccCccccccccccccc-chH-HHHHHHHHHHHHH
Confidence 58999999999997 579999999999987 7 7 999999998644322111000000 011 1122222233333
Q ss_pred HHHHHhhhcC------------------------cc----------cceeeeCcchHHHhccCCccEEEEc
Q 033189 83 EAKEICSSKS------------------------VM----------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 83 ~~~~~~~~~~------------------------~~----------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
.+.+.+...+ ++ +.++++||++++|+++++||||+||
T Consensus 74 ~~~~~~~~~~~~~~~~v~~G~p~~~I~~~a~~~~~DLIV~Gs~~~~~~~~llGS~a~~vl~~a~cpVlvVr 144 (144)
T PRK15005 74 EIIKKFKLPTDRVHVHVEEGSPKDRILELAKKIPADMIIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR 144 (144)
T ss_pred HHHHHhCCCCCceEEEEeCCCHHHHHHHHHHHcCCCEEEEeCCCCCchheeecchHHHHHHhCCCCEEEeC
Confidence 3322221111 11 7788999999999999999999996
No 3
>PRK09982 universal stress protein UspD; Provisional
Probab=99.83 E-value=8.2e-20 Score=117.31 Aligned_cols=110 Identities=12% Similarity=0.017 Sum_probs=74.4
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (125)
|+|++||||+|+|+.|..|+++|..+|+.. + + +|+++||.++.+.... .... . ..+...+..++.+++.+++
T Consensus 1 ~~~k~ILvavD~S~~s~~al~~A~~lA~~~-~--a--~l~llhV~~~~~~~~~-~~~~-~-~~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK09982 1 MAYKHIGVAISGNEEDALLVNKALELARHN-D--A--HLTLIHIDDGLSELYP-GIYF-P-ATEDILQLLKNKSDNKLYK 72 (142)
T ss_pred CCceEEEEEecCCcchHHHHHHHHHHHHHh-C--C--eEEEEEEccCcchhch-hhhc-c-chHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999987 7 7 9999999876442211 0000 0 1122333444444445544
Q ss_pred HHHHhhhcC----------------------cc----------cceeeeCcchHHHhccCCccEEEEcCCCC
Q 033189 84 AKEICSSKS----------------------VM----------ISLAVLGSVSDYCAHHAHCTVMIVKRPKT 123 (125)
Q Consensus 84 ~~~~~~~~~----------------------~~----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~~ 123 (125)
..+.+...+ .+ +++++ | ++++|+++++||||+||...+
T Consensus 73 ~~~~~~~~~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG~~~~~~~~~~-~-va~~V~~~s~~pVLvv~~~~~ 142 (142)
T PRK09982 73 LTKNIQWPKTKLRIERGEMPETLLEIMQKEQCDLLVCGHHHSFINRLM-P-AYRGMINKMSADLLIVPFIDK 142 (142)
T ss_pred HHHhcCCCcceEEEEecCHHHHHHHHHHHcCCCEEEEeCChhHHHHHH-H-HHHHHHhcCCCCEEEecCCCC
Confidence 443322111 11 55555 5 999999999999999998653
No 4
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=99.80 E-value=1.1e-18 Score=112.07 Aligned_cols=106 Identities=27% Similarity=0.468 Sum_probs=75.3
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEI 87 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (125)
+||||+|+|+.|.+|++||+.+++.. + + +++++||.++........ ......+.+.++.++..+..++++.+.
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~-~--~--~l~ll~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATK-G--Q--TIVLVHVHPPITSIPSSS--GKLEVASAYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCC-C--C--cEEEEEeccCcccCCCCc--cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999987 7 7 999999987643221111 100112233344445566666666655
Q ss_pred hhhcCcc------------------------------------cceeeeC-cchHHHhccCC--ccEEEEcC
Q 033189 88 CSSKSVM------------------------------------ISLAVLG-SVSDYCAHHAH--CTVMIVKR 120 (125)
Q Consensus 88 ~~~~~~~------------------------------------~~~~~~G-s~s~~vl~~a~--~pVlvV~~ 120 (125)
+...++. +.++++| |++++|+++++ ||||+|++
T Consensus 74 ~~~~~~~~~~~~~~g~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~~gssva~~Vi~~a~~~c~Vlvv~~ 145 (146)
T cd01989 74 CSRKGVQCEDVVLEDDDVAKAIVEYVADHGITKLVMGASSDNHFSMKFKKSDVASSVLKEAPDFCTVYVVSK 145 (146)
T ss_pred HhhcCCeEEEEEEeCCcHHHHHHHHHHHcCCCEEEEeccCCCceeecccCCchhHHHHhcCCCCceEEEEeC
Confidence 5433221 6677887 69999999999 99999986
No 5
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=99.79 E-value=7.6e-19 Score=112.70 Aligned_cols=41 Identities=12% Similarity=0.182 Sum_probs=37.9
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
|+|++||+|+|+|+.+..|+++|..+|+.. + + +|+++||.+
T Consensus 1 ~~~~~ILvavD~S~~s~~al~~a~~la~~~-~--a--~l~ll~v~~ 41 (144)
T PRK15118 1 MAYKHILIAVDLSPESKVLVEKAVSMARPY-N--A--KVSLIHVDV 41 (144)
T ss_pred CCceEEEEEccCChhHHHHHHHHHHHHHhh-C--C--EEEEEEEcc
Confidence 579999999999999999999999999986 7 7 999999953
No 6
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=99.75 E-value=7.3e-18 Score=105.89 Aligned_cols=45 Identities=27% Similarity=0.435 Sum_probs=40.8
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcc
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAV 54 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~ 54 (125)
|||+||||+|+++.+..+++||+.+++.. + + +++++||.+.....
T Consensus 1 M~~~Ilv~~d~~~~~~~al~~a~~la~~~-~--~--~i~~l~v~~~~~~~ 45 (140)
T PF00582_consen 1 MYKRILVAIDGSEESRRALRFALELAKRS-G--A--EITLLHVIPPPPQY 45 (140)
T ss_dssp -TSEEEEEESSSHHHHHHHHHHHHHHHHH-T--C--EEEEEEEEESCHCH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHHhh-C--C--eEEEEEeecccccc
Confidence 68999999999999999999999999997 7 7 99999999986644
No 7
>PRK10116 universal stress protein UspC; Provisional
Probab=99.74 E-value=1.6e-17 Score=106.16 Aligned_cols=109 Identities=11% Similarity=0.114 Sum_probs=72.1
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (125)
|+|++|||++|+|+.+..|+++|+.+|+.. + + +|+++|+++.+..+.... ....+...+...+..++.+++
T Consensus 1 ~~~~~ILv~~D~s~~s~~al~~A~~lA~~~-~--a--~l~ll~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~ 71 (142)
T PRK10116 1 MSYSNILVAVAVTPESQQLLAKAVSIARPV-N--G--KISLITLASDPEMYNQFA----APMLEDLRSVMQEETQSFLDK 71 (142)
T ss_pred CCCceEEEEccCCcchHHHHHHHHHHHHHh-C--C--EEEEEEEccCcccchhhh----HHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999996 7 7 999999987643221111 111122333333333344443
Q ss_pred HHHHhh----------------------hcCcc-----------cceeeeCcchHHHhccCCccEEEEcCCCC
Q 033189 84 AKEICS----------------------SKSVM-----------ISLAVLGSVSDYCAHHAHCTVMIVKRPKT 123 (125)
Q Consensus 84 ~~~~~~----------------------~~~~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~~ 123 (125)
...... +.+++ +.++ +|++++++++++||||+||.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~~--~s~a~~v~~~~~~pVLvv~~~~~ 142 (142)
T PRK10116 72 LIQDADYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHSFFSRA--SCSAKRVIASSEVDVLLVPLTGD 142 (142)
T ss_pred HHHhcCCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHHH--HHHHHHHHhcCCCCEEEEeCCCC
Confidence 322211 00111 4443 38999999999999999998753
No 8
>PRK11175 universal stress protein UspE; Provisional
Probab=99.74 E-value=2.5e-17 Score=117.26 Aligned_cols=111 Identities=14% Similarity=0.080 Sum_probs=72.9
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEE 83 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 83 (125)
|+|++||||+|+|+.+..|+++|+.+|+.. + + +|+++|+.+...... ..... ........+...+.....++.
T Consensus 1 ~~~~~ILv~~D~s~~~~~al~~a~~lA~~~-~--a--~l~ll~v~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~l~~ 73 (305)
T PRK11175 1 AKYQNILVVIDPNQDDQPALRRAVYLAQRN-G--G--KITAFLPIYDFSYEM-TTLLS-PDEREAMRQGVISQRTAWIRE 73 (305)
T ss_pred CCcceEEEEcCCCccccHHHHHHHHHHHhc-C--C--CEEEEEeccCchhhh-hcccc-hhHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999997 7 7 999999986533211 11000 111111111111222233333
Q ss_pred HHHHhhhcCc-------------------------c-----------cceeeeCcchHHHhccCCccEEEEcCC
Q 033189 84 AKEICSSKSV-------------------------M-----------ISLAVLGSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 84 ~~~~~~~~~~-------------------------~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
..+.+...++ + +.++++||++++|+++++||||+||..
T Consensus 74 ~~~~~~~~~~~~~~~v~~~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~~gs~~~~l~~~~~~pvlvv~~~ 147 (305)
T PRK11175 74 QAKPYLDAGIPIEIKVVWHNRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVIFTPTDWHLLRKCPCPVLMVKDQ 147 (305)
T ss_pred HHHHHhhcCCceEEEEecCCCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhccChhHHHHHhcCCCCEEEeccc
Confidence 3222222111 1 778899999999999999999999974
No 9
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.71 E-value=3.1e-16 Score=98.62 Aligned_cols=96 Identities=19% Similarity=0.232 Sum_probs=66.7
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEI 87 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (125)
+||||+|+++.+.+++++|..+++.. + + +++++|+++.+..... . ... ...+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~-~--~--~v~ll~v~~~~~~~~~-~------~~~----~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQ-N--G--EIIPLNVIEVPNHSSP-S------QLE----VNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcC-C--C--eEEEEEEEecCCCCCc-c------hhH----HHHHHHHHHHHHHHHH
Confidence 59999999999999999999999986 6 7 9999999987543211 0 001 1112222333333222
Q ss_pred hhhcC-------------------------cc-----------cceeeeCcchHHHhccCCccEEEEc
Q 033189 88 CSSKS-------------------------VM-----------ISLAVLGSVSDYCAHHAHCTVMIVK 119 (125)
Q Consensus 88 ~~~~~-------------------------~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~ 119 (125)
+...+ ++ +.++++||++.+|+++++||||+|+
T Consensus 65 ~~~~g~~~~~~~~~~~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~lGs~~~~v~~~~~~pvlvv~ 132 (132)
T cd01988 65 AASLGVPVHTIIRIDHDIASGILRTAKERQADLIIMGWHGSTSLRDRLFGGVIDQVLESAPCDVAVVK 132 (132)
T ss_pred hhhcCCceEEEEEecCCHHHHHHHHHHhcCCCEEEEecCCCCCccceecCchHHHHHhcCCCCEEEeC
Confidence 22211 11 5578899999999999999999986
No 10
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=99.66 E-value=3.7e-16 Score=97.72 Aligned_cols=93 Identities=15% Similarity=0.067 Sum_probs=64.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHH--
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAK-- 85 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-- 85 (125)
+||||+|+|+.+.++++||+.+++.. + + +|+++||.+..... . . + +.++..+.+.+.+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~-~--~--~l~ll~v~~~~~~~------~-~---~----~~~~~l~~~~~~~~~~ 61 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL-K--A--PWYVVYVETPRLNR------L-S---E----AERRRLAEALRLAEEL 61 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh-C--C--CEEEEEEecCcccc------C-C---H----HHHHHHHHHHHHHHHc
Confidence 59999999999999999999999997 7 7 99999998754321 0 0 0 11111111111111
Q ss_pred -----------------HHhhhcCcc-----------cceeeeCcchHHHhccC-CccEEEEc
Q 033189 86 -----------------EICSSKSVM-----------ISLAVLGSVSDYCAHHA-HCTVMIVK 119 (125)
Q Consensus 86 -----------------~~~~~~~~~-----------~~~~~~Gs~s~~vl~~a-~~pVlvV~ 119 (125)
+.+.+.+++ +.++++||++++|++++ +|||||++
T Consensus 62 ~~~~~~~~~~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~~Gs~~~~v~~~a~~~~v~v~~ 124 (124)
T cd01987 62 GAEVVTLPGDDVAEAIVEFAREHNVTQIVVGKSRRSRWRELFRGSLVDRLLRRAGNIDVHIVA 124 (124)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHhcccHHHHHHHhCCCCeEEEeC
Confidence 111111221 78889999999999999 99999986
No 11
>PRK11175 universal stress protein UspE; Provisional
Probab=99.56 E-value=7.5e-14 Score=99.37 Aligned_cols=114 Identities=13% Similarity=0.189 Sum_probs=67.8
Q ss_pred CCCeEEEEeCCChH-------HHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCccccc--CCCCCcccchhHHHHHHH
Q 033189 5 ETQTMVVGIDDSEH-------STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGL--AGHGAVEVLPHVDSDLKK 75 (125)
Q Consensus 5 ~~~~IlvavD~s~~-------s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 75 (125)
.+++||+|+|+|+. +..++++|..+++..-+ + +++++||++........ ......+..+...+...+
T Consensus 151 ~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~--a--~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (305)
T PRK11175 151 EGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNH--A--EVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQHLL 226 (305)
T ss_pred CCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcC--C--ceEEEEEecCcchhccccccccchhhHHHHHHHHHHH
Confidence 47899999999975 36899999999987303 5 99999998754322111 000001111111111111
Q ss_pred HHHHHHHHH------------------HHHhhhcCcc-----------cceeeeCcchHHHhccCCccEEEEcCCC
Q 033189 76 IAARLVEEA------------------KEICSSKSVM-----------ISLAVLGSVSDYCAHHAHCTVMIVKRPK 122 (125)
Q Consensus 76 ~~~~~l~~~------------------~~~~~~~~~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~~ 122 (125)
..+++.+.. .+.+.+.+++ +.++++||++++|+++++||||+||++.
T Consensus 227 ~l~~~~~~~~~~~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~llGS~a~~v~~~~~~pVLvv~~~~ 302 (305)
T PRK11175 227 AMKALRQKFGIDEEQTHVEEGLPEEVIPDLAEHLDAELVILGTVGRTGLSAAFLGNTAEHVIDHLNCDLLAIKPDG 302 (305)
T ss_pred HHHHHHHHhCCChhheeeccCCHHHHHHHHHHHhCCCEEEECCCccCCCcceeecchHHHHHhcCCCCEEEEcCCC
Confidence 122221110 0001111111 7789999999999999999999998754
No 12
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=99.52 E-value=8.2e-13 Score=84.56 Aligned_cols=113 Identities=23% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCCCeEEEEeC-CChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHH
Q 033189 4 AETQTMVVGID-DSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVE 82 (125)
Q Consensus 4 ~~~~~IlvavD-~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 82 (125)
.++++|++++| +++.+..+++++..++... + . .+.+++|.+.............................+.++
T Consensus 3 ~~~~~il~~~d~~s~~~~~a~~~a~~~~~~~-~--~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (154)
T COG0589 3 AMYKKILVAVDVGSEAAEKALEEAVALAKRL-G--A--PLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLA 77 (154)
T ss_pred cccceEEEEeCCCCHHHHHHHHHHHHHHHhc-C--C--eEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHH
Confidence 47899999999 9999999999999999997 7 6 999999987755432111100000000111111122222222
Q ss_pred HHHHHhhhcC--------------------------cc-----------cceeeeCcchHHHhccCCccEEEEcCC
Q 033189 83 EAKEICSSKS--------------------------VM-----------ISLAVLGSVSDYCAHHAHCTVMIVKRP 121 (125)
Q Consensus 83 ~~~~~~~~~~--------------------------~~-----------~~~~~~Gs~s~~vl~~a~~pVlvV~~~ 121 (125)
.+.+.....+ .+ ++++++||++++|+++++||||++|..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~llGsvs~~v~~~~~~pVlvv~~~ 153 (154)
T COG0589 78 EAKALAEAAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRSGLSRLLLGSVAEKVLRHAPCPVLVVRSE 153 (154)
T ss_pred HHHHHHHHcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCccccceeeehhHHHHHhcCCCCEEEEccC
Confidence 2222211111 00 677899999999999999999999975
No 13
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=99.47 E-value=1.8e-12 Score=80.39 Aligned_cols=95 Identities=28% Similarity=0.435 Sum_probs=65.9
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHHH
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEI 87 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 87 (125)
+||||+|+++.+..++++|..+++.. + + +++++|+.+....... ...+......++.++.....
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~-~--~--~i~~l~v~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL-G--A--ELVLLHVVDPPPSSAA-----------ELAELLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc-C--C--EEEEEEEecCCCCcch-----------hHHHHHHHHHHHHHHHHHHH
Confidence 59999999999999999999999997 7 7 9999999876443211 11122222223333333322
Q ss_pred hhhcCc------------------------c-----------cceeeeCcchHHHhccCCccEEEE
Q 033189 88 CSSKSV------------------------M-----------ISLAVLGSVSDYCAHHAHCTVMIV 118 (125)
Q Consensus 88 ~~~~~~------------------------~-----------~~~~~~Gs~s~~vl~~a~~pVlvV 118 (125)
+...++ + +.++++|+++.+++++++||||++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~~~~~~~~ll~~~~~pvliv 130 (130)
T cd00293 65 LAEAGVKVETVVLEGDPAEAILEAAEELGADLIVMGSRGRSGLRRLLLGSVAERVLRHAPCPVLVV 130 (130)
T ss_pred HhcCCCceEEEEecCCCHHHHHHHHHHcCCCEEEEcCCCCCccceeeeccHHHHHHhCCCCCEEeC
Confidence 211111 1 556799999999999999999985
No 14
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=99.26 E-value=1.8e-10 Score=83.99 Aligned_cols=102 Identities=17% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCCCeEEEEeCCChHHHHHHHHHHHHhhhc-CCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHH
Q 033189 3 TAETQTMVVGIDDSEHSTYALQWTLDHFFAN-STVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLV 81 (125)
Q Consensus 3 ~~~~~~IlvavD~s~~s~~a~~~a~~la~~~-~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (125)
.++|+|||||+|||+.|++|+++|+.+|+.. ++ + +|+++||.+....... .+ ...+..++++
T Consensus 2 ~~~ykkILVavDGSe~S~~Al~~AielA~~~g~~--A--eL~lL~Vv~~~~~~~~---------~~----~~~~~~eell 64 (357)
T PRK12652 2 MMAANRLLVPVADSVTVRQTVAYAVESAEEAAET--P--TVHLVAAASGRAVDPE---------GQ----DELAAAEELL 64 (357)
T ss_pred CcccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCC--C--EEEEEEEecCcccccc---------hh----HHHHHHHHHH
Confidence 4689999999999999999999999999983 04 5 9999999985432110 01 1112233344
Q ss_pred HHHHHHhhh------cCcccceee---------eCcchHHHhccC---CccEEEEcCC
Q 033189 82 EEAKEICSS------KSVMISLAV---------LGSVSDYCAHHA---HCTVMIVKRP 121 (125)
Q Consensus 82 ~~~~~~~~~------~~~~~~~~~---------~Gs~s~~vl~~a---~~pVlvV~~~ 121 (125)
+++++.+.. .++.....+ .|..++.|+..+ +|..+|+-++
T Consensus 65 e~~~~~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~ 122 (357)
T PRK12652 65 ERVEVWATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPE 122 (357)
T ss_pred HHHHHHHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 444443332 355533222 289999998877 5898888764
No 15
>PRK10490 sensor protein KdpD; Provisional
Probab=98.17 E-value=1.7e-05 Score=64.44 Aligned_cols=41 Identities=7% Similarity=-0.053 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
...+|||||++++.+++++++|.++|.+. + + +++++||.++
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~-~--a--~~~~l~V~~~ 289 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARL-G--S--VWHAVYVETP 289 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhc-C--C--CEEEEEEecC
Confidence 34679999999999999999999999997 8 7 9999999865
No 16
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=97.87 E-value=0.00011 Score=42.85 Aligned_cols=73 Identities=12% Similarity=0.082 Sum_probs=51.3
Q ss_pred EEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHh
Q 033189 9 MVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEIC 88 (125)
Q Consensus 9 IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 88 (125)
||++++++..|..++.++.+.+... . +++.+|+. .......+.+
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~~~~----~--~~~~~~~~------------------------------~~~~~~~~~a 44 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLKSGG----P--EVVALVVV------------------------------AFVRILKRLA 44 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHHhcC----C--CEEEEEeH------------------------------HHHHHHHHHH
Confidence 6899999999999999999988443 5 88888886 1122222222
Q ss_pred hhcCcc-----------cceeeeC-cchHHHhccCCccEEE
Q 033189 89 SSKSVM-----------ISLAVLG-SVSDYCAHHAHCTVMI 117 (125)
Q Consensus 89 ~~~~~~-----------~~~~~~G-s~s~~vl~~a~~pVlv 117 (125)
.+.+++ ....+.| +++..++..++|||+.
T Consensus 45 ~~~~~~~Iv~G~~~~d~~~~~~~~~~~~~~~~~~~~~~vl~ 85 (86)
T cd01984 45 AEEGADVIILGHNADDVAGRRLGASANVLVVIKGAGIPVLT 85 (86)
T ss_pred HHcCCCEEEEcCCchhhhhhccCchhhhhhcccccCCceeC
Confidence 222322 4445556 8999999999999974
No 17
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=97.82 E-value=0.00018 Score=57.33 Aligned_cols=98 Identities=15% Similarity=0.057 Sum_probs=66.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHH
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAK 85 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 85 (125)
..+||||+++++.+.+.+++|.++|.+. + + +++.+||..+.....+ +..++..+..+.-++
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~-~--a--~~~av~v~~~~~~~~~--------------~~~~~~l~~~~~Lae 308 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRL-H--A--KWTAVYVETPELHRLS--------------EKEARRLHENLRLAE 308 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHh-C--C--CeEEEEEecccccccc--------------HHHHHHHHHHHHHHH
Confidence 3689999999999999999999999997 7 7 9999999876542210 011111111111111
Q ss_pred -------------------HHhhhcCcc-----------cceeeeCcchHHHhccCC-ccEEEEcCCC
Q 033189 86 -------------------EICSSKSVM-----------ISLAVLGSVSDYCAHHAH-CTVMIVKRPK 122 (125)
Q Consensus 86 -------------------~~~~~~~~~-----------~~~~~~Gs~s~~vl~~a~-~pVlvV~~~~ 122 (125)
+.+...++. +.+++.||..++++++.+ +.|-+|+.+.
T Consensus 309 ~lGae~~~l~~~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~~~~l~~~L~~~~~~idv~ii~~~~ 376 (890)
T COG2205 309 ELGAEIVTLYGGDVAKAIARYAREHNATKIVIGRSRRSRWRRLFKGSLADRLAREAPGIDVHIVALDA 376 (890)
T ss_pred HhCCeEEEEeCCcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHhcccHHHHHHhcCCCceEEEeeCCC
Confidence 112222221 555667999999999985 8999998754
No 18
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=86.08 E-value=3.3 Score=27.37 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=30.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+|+||+.|...|...+.....+.+.. + - ++.++||-..
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~-~--~--~~~~~~vdh~ 38 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRN-G--I--KLIAVHVDHG 38 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTT-T--T--EEEEEEEE-S
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhc-C--C--CeEEEEEecC
Confidence 69999999999999998888888876 6 5 9999999654
No 19
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=85.91 E-value=2.6 Score=27.86 Aligned_cols=38 Identities=16% Similarity=0.147 Sum_probs=31.0
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+|+|++.|...|.-++..+...++.. + . ++.++|+-..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~-~--~--~v~~v~vd~g 38 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKL-K--I--RLIAAHVDHG 38 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc-C--C--CEEEEEeCCC
Confidence 58999999999999998888877775 6 5 8888888543
No 20
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=85.14 E-value=4.5 Score=33.47 Aligned_cols=43 Identities=9% Similarity=0.131 Sum_probs=30.6
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCC
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~ 52 (125)
-|||+|+...+.....+..+-..-... . .+..++++|.++...
T Consensus 459 lriL~cv~~~~~v~~li~Lle~s~~t~-~--sp~~vy~lhLveL~~ 501 (832)
T PLN03159 459 LRMLVCVHTPRNVPTIINLLEASHPTK-R--SPICIYVLHLVELTG 501 (832)
T ss_pred eeEEEEeccCCcHHHHHHHHHhcCCCC-C--CCceEEEEEEEeecC
Confidence 379999998888877776655533322 2 334899999998654
No 21
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=82.17 E-value=17 Score=30.25 Aligned_cols=41 Identities=12% Similarity=0.054 Sum_probs=35.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~ 51 (125)
..+|.+..=|.+..+.|+.||.+++++. + . .++++|..+..
T Consensus 630 ~~~v~~~F~GG~DDREALa~a~rma~~p-~--v--~lTVirf~~~~ 670 (832)
T PLN03159 630 SHHVAVLFFGGPDDREALAYAWRMSEHP-G--I--TLTVMRFIPGE 670 (832)
T ss_pred ceeEEEEecCCcchHHHHHHHHHHhcCC-C--e--EEEEEEEEccc
Confidence 3478888888899999999999999987 6 6 99999998753
No 22
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=81.61 E-value=4.6 Score=27.14 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=29.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
.++|+++|-||-.+..+.+..-.+.+.. | . ++.++-.
T Consensus 1 ~k~IllgVTGsiaa~ka~~l~~~L~k~~-g--~--~V~vv~T 37 (185)
T PRK06029 1 MKRLIVGISGASGAIYGVRLLQVLRDVG-E--I--ETHLVIS 37 (185)
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHhhc-C--C--eEEEEEC
Confidence 3689999999999999999998887754 5 5 7655544
No 23
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=79.05 E-value=7.2 Score=25.52 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=31.1
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+|+|++.|...|.-++..+....... + . ++.++|+-..
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~-~--~--~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRL-G--L--RLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHc-C--C--cEEEEEecCC
Confidence 58999999999999998888887765 5 5 8888888543
No 24
>PRK05920 aromatic acid decarboxylase; Validated
Probab=77.12 E-value=8.8 Score=26.26 Aligned_cols=37 Identities=14% Similarity=0.195 Sum_probs=28.5
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
+.+||+++|-||-.+..+++..-.+.+. | . +++++-.
T Consensus 2 ~~krIllgITGsiaa~ka~~lvr~L~~~--g--~--~V~vi~T 38 (204)
T PRK05920 2 KMKRIVLAITGASGAIYGVRLLECLLAA--D--Y--EVHLVIS 38 (204)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHHC--C--C--EEEEEEC
Confidence 4588999999999998888877777664 5 5 7666554
No 25
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=76.74 E-value=8.8 Score=25.66 Aligned_cols=36 Identities=8% Similarity=0.053 Sum_probs=28.0
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
.|||++++-||..+..+.++.-.+.+. + . ++.++-.
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~~--g--~--~V~vv~T 36 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTKR--G--Y--QVTVLMT 36 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHHC--C--C--EEEEEEC
Confidence 478999999999999988888777554 5 6 7665543
No 26
>cd03364 TOPRIM_DnaG_primases TOPRIM_DnaG_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of proteins similar to Escherichia coli DnaG. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. E. coli DnaG is a single subunit enzyme.
Probab=75.11 E-value=12 Score=20.95 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=25.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANST 35 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~ 35 (125)
.++|+++.|.....+.+.....+..... +
T Consensus 43 ~~~vii~~D~D~aG~~a~~~~~~~l~~~-g 71 (79)
T cd03364 43 AKEVILAFDGDEAGQKAALRALELLLKL-G 71 (79)
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHHC-C
Confidence 3889999999999999998888888776 5
No 27
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=74.43 E-value=6.8 Score=24.36 Aligned_cols=35 Identities=14% Similarity=0.041 Sum_probs=26.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
|||++++-||.....+.++..++.+. | . ++.++-.
T Consensus 1 k~i~l~vtGs~~~~~~~~~l~~L~~~--g--~--~v~vv~S 35 (129)
T PF02441_consen 1 KRILLGVTGSIAAYKAPDLLRRLKRA--G--W--EVRVVLS 35 (129)
T ss_dssp -EEEEEE-SSGGGGGHHHHHHHHHTT--T--S--EEEEEES
T ss_pred CEEEEEEECHHHHHHHHHHHHHHhhC--C--C--EEEEEEC
Confidence 68999999999999988877777776 4 6 7666554
No 28
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=72.10 E-value=13 Score=25.11 Aligned_cols=35 Identities=9% Similarity=0.071 Sum_probs=25.5
Q ss_pred CeEEEEeCCChHHHHHH-HHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 7 QTMVVGIDDSEHSTYAL-QWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~-~~a~~la~~~~~~~~~~~l~llhv 47 (125)
++|++++-||..+..++ +..-.+ .+. | . +++++-.
T Consensus 1 ~~I~lgITGs~~a~~a~~~ll~~L-~~~-g--~--~V~vI~S 36 (187)
T TIGR02852 1 KRIGFGLTGSHCTLEAVMPQLEKL-VDE-G--A--EVTPIVS 36 (187)
T ss_pred CEEEEEEecHHHHHHHHHHHHHHH-HhC-c--C--EEEEEEc
Confidence 58999999999999997 555555 444 5 6 7665543
No 29
>PF13662 Toprim_4: Toprim domain; PDB: 1EQN_E 1DD9_A 3B39_B 1DDE_A.
Probab=71.41 E-value=9.9 Score=21.49 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=22.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhc
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFAN 33 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~ 33 (125)
.++|+++.|.+..++.+..+....+...
T Consensus 46 ~~~Vii~~D~D~~G~~~a~~i~~~l~~~ 73 (81)
T PF13662_consen 46 VKEVIIAFDNDKAGEKAAQKIAKKLLPL 73 (81)
T ss_dssp -SEEEEEEESSHHHHHHHHHHHHHHG--
T ss_pred CceEEEEeCcCHHHHHHHHHHHHHHHhh
Confidence 4889999999999999999998866654
No 30
>TIGR00646 MG010 DNA primase-related protein. The DNA primase DnaG of E. coli and its apparent orthologs in other eubacterial species are approximately 600 residues in length. Within this set, a conspicuous outlier in percent identity, as seen in a UPGMA difference tree, is the branch containing the Mycoplasmas. This lineage is also unique in containing the small, DNA primase-related protein modelled by this alignment, which is homologous to the central third of DNA primase. Several small regions of sequence similarity specifically to Mycoplasma sequences rather than to all DnaG homologs suggests that the divergence of this protein from DnaG post-dated the separation of bacterial lineages. The function of this DNA primase-related protein is unknown.
Probab=68.17 E-value=23 Score=24.60 Aligned_cols=35 Identities=6% Similarity=-0.038 Sum_probs=29.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEE
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIV 45 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~ll 45 (125)
.++|+++.|+....+.|...+..++... | - .+.++
T Consensus 154 ~~~Iil~~D~D~AG~~Aa~r~~~~L~~~-G--~--~v~vv 188 (218)
T TIGR00646 154 IEKIFICFDNDFAGKNAAANLEEILKKA-G--F--ITKVI 188 (218)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHHHHC-C--C--eEEEE
Confidence 4689999999999999999999999876 6 4 55544
No 31
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=67.71 E-value=17 Score=24.13 Aligned_cols=35 Identities=9% Similarity=0.020 Sum_probs=25.9
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
|||++++-||..+..+.++.-.+-+ . + . +++++-.
T Consensus 1 k~I~lgvtGs~~a~~~~~ll~~L~~-~-g--~--~V~vi~T 35 (177)
T TIGR02113 1 KKILLAVTGSIAAYKAADLTSQLTK-L-G--Y--DVTVLMT 35 (177)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHHHH-C-C--C--EEEEEEC
Confidence 6899999999999988866666644 3 5 5 7665543
No 32
>PF02878 PGM_PMM_I: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; InterPro: IPR005844 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain I found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 3I3W_B 1WQA_C 1KFQ_B 1KFI_A 2Z0F_A 2FKM_X 3C04_A 1K2Y_X 1P5G_X 2H4L_X ....
Probab=67.44 E-value=14 Score=23.12 Aligned_cols=41 Identities=22% Similarity=0.226 Sum_probs=33.4
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~ 51 (125)
..+|+|+-|..+.|+...+.++.-+... | . +++.+...+.+
T Consensus 40 ~~~VvVg~D~R~~s~~~~~~~~~~l~~~-G--~--~V~~~g~~~tP 80 (137)
T PF02878_consen 40 GSRVVVGRDTRPSSPMLAKALAAGLRAN-G--V--DVIDIGLVPTP 80 (137)
T ss_dssp SSEEEEEE-SSTTHHHHHHHHHHHHHHT-T--E--EEEEEEEB-HH
T ss_pred CCeEEEEEcccCCHHHHHHHHHHHHhhc-c--c--ccccccccCcH
Confidence 5789999999999999999999988887 7 6 88888865544
No 33
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=63.83 E-value=33 Score=24.08 Aligned_cols=41 Identities=20% Similarity=0.168 Sum_probs=29.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+|+|++.|...|...+.....+.... + -..++..+|+-.
T Consensus 29 ~~kilVa~SGG~DS~~LL~ll~~l~~~~-~--~~~~l~av~vd~ 69 (258)
T PRK10696 29 GDRVMVCLSGGKDSYTLLDILLNLQKRA-P--INFELVAVNLDQ 69 (258)
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHHHhC-C--CCeEEEEEEecC
Confidence 4689999999999988887777765543 2 113788888754
No 34
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=62.97 E-value=26 Score=23.84 Aligned_cols=35 Identities=6% Similarity=-0.017 Sum_probs=26.2
Q ss_pred CCeEEEEeCCChHHHH-HHHHHHHHhhhcCCCCCCcEEEEEE
Q 033189 6 TQTMVVGIDDSEHSTY-ALQWTLDHFFANSTVNPPFKLVIVH 46 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~-a~~~a~~la~~~~~~~~~~~l~llh 46 (125)
.++|+++|-||-.+.. +++.+-.+.+ . | . +++++-
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k-~-G--~--~V~vv~ 40 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVD-E-G--A--EVTPIV 40 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHh-C-c--C--EEEEEE
Confidence 5789999999999998 5777666644 3 5 6 766554
No 35
>PHA02031 putative DnaG-like primase
Probab=60.47 E-value=29 Score=24.82 Aligned_cols=36 Identities=3% Similarity=-0.041 Sum_probs=29.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
++|+++.|++...+.|...++.++... + - .+.++..
T Consensus 207 ~~Vil~fDgD~AG~~Aa~ra~~~l~~~-~--~--~v~vv~l 242 (266)
T PHA02031 207 PRVLIFLDGDPAGVDGSAGAMRRLRPL-L--I--EGQVIIT 242 (266)
T ss_pred CCEEEEeCCCHHHHHHHHHHHHHHHHc-C--C--ceEEEEC
Confidence 789999999999999999999999876 6 4 5555444
No 36
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=58.82 E-value=31 Score=19.34 Aligned_cols=44 Identities=9% Similarity=0.030 Sum_probs=30.9
Q ss_pred CCCCCCCeEEEEeCCCh-HHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 1 MATAETQTMVVGIDDSE-HSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 1 m~~~~~~~IlvavD~s~-~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
|....||+|.+ +..|+ +...|++-|+..|... - + .|...-|.+.
T Consensus 1 m~~hvYK~Iel-vGtSp~S~d~Ai~~Ai~RA~~t-~--~--~l~wfeV~~~ 45 (71)
T COG3360 1 MSHHVYKKIEL-VGTSPTSIDAAIANAIARAADT-L--D--NLDWFEVVET 45 (71)
T ss_pred CCcceEEEEEE-EecCCccHHHHHHHHHHHHHhh-h--h--cceEEEEEee
Confidence 67777898875 34444 5678889998888875 3 4 6777777664
No 37
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=56.64 E-value=41 Score=25.51 Aligned_cols=38 Identities=13% Similarity=0.112 Sum_probs=29.0
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
...++|+++|-||-.+..+.++.-.+-+ . | . ++.++-.
T Consensus 4 l~~k~IllgvTGsiaa~k~~~lv~~L~~-~-g--~--~V~vv~T 41 (399)
T PRK05579 4 LAGKRIVLGVSGGIAAYKALELVRRLRK-A-G--A--DVRVVMT 41 (399)
T ss_pred CCCCeEEEEEeCHHHHHHHHHHHHHHHh-C-C--C--EEEEEEC
Confidence 3468999999999998888888877754 4 5 6 7666553
No 38
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=55.78 E-value=38 Score=23.97 Aligned_cols=39 Identities=13% Similarity=0.055 Sum_probs=29.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCC
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~ 52 (125)
.+|+||+.|...|..++.....+.... ++.++||-....
T Consensus 22 ~~ilVavSGGkDS~~ll~~L~~l~~~~-------~~~a~~Vd~~~~ 60 (298)
T COG0037 22 YKILVAVSGGKDSLALLHLLKELGRRI-------EVEAVHVDHGLR 60 (298)
T ss_pred CeEEEEeCCChHHHHHHHHHHHhccCc-------eEEEEEecCCCC
Confidence 689999999999988886666655432 788888865543
No 39
>smart00493 TOPRIM topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins.
Probab=55.55 E-value=28 Score=19.01 Aligned_cols=26 Identities=4% Similarity=0.006 Sum_probs=21.4
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhh
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFA 32 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~ 32 (125)
++|.++.|.+..++.+..+....+..
T Consensus 48 ~~Iii~~D~D~~G~~~~~~i~~~l~~ 73 (76)
T smart00493 48 KEVILATDPDREGEAIAWKLAELLKP 73 (76)
T ss_pred CEEEEEcCCChhHHHHHHHHHHHhhh
Confidence 56999999999999888887776654
No 40
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=55.10 E-value=32 Score=22.99 Aligned_cols=34 Identities=15% Similarity=0.119 Sum_probs=26.4
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
||+++|-||-.+..+.+..-.+.+. | . +++++-.
T Consensus 1 ~illgvtGsiaa~ka~~lir~L~~~--g--~--~V~vv~T 34 (181)
T TIGR00421 1 RIVVAMTGASGVIYGIRLLEVLKEA--G--V--EVHLVIS 34 (181)
T ss_pred CEEEEEECHHHHHHHHHHHHHHHHC--C--C--EEEEEEC
Confidence 5999999999999999888888654 5 5 7555544
No 41
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=53.16 E-value=56 Score=25.00 Aligned_cols=40 Identities=18% Similarity=0.204 Sum_probs=29.9
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+|+|++.|...|...+.....+.....+ - +++.+||--
T Consensus 15 ~~~ilvavSGG~DS~~Ll~~l~~~~~~~~~--~--~l~a~hvnh 54 (436)
T PRK10660 15 SRQILVAFSGGLDSTVLLHLLVQWRTENPG--V--TLRAIHVHH 54 (436)
T ss_pred CCeEEEEecCCHHHHHHHHHHHHHHHhcCC--C--eEEEEEEeC
Confidence 478999999999998888777665422203 4 899999954
No 42
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=51.06 E-value=50 Score=21.20 Aligned_cols=37 Identities=19% Similarity=0.011 Sum_probs=29.2
Q ss_pred eEEEEeCCC-----hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 8 TMVVGIDDS-----EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 8 ~IlvavD~s-----~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
+|||-++-. +.+..++..|.++++.. | . +++++.+-+
T Consensus 1 ~ilv~~e~~~~~l~~~~~e~l~~A~~La~~~-g--~--~v~av~~G~ 42 (164)
T PF01012_consen 1 NILVFAEHRDGRLNPVSLEALEAARRLAEAL-G--G--EVTAVVLGP 42 (164)
T ss_dssp EEEEEE-EETCEE-HHHHHHHHHHHHHHHCT-T--S--EEEEEEEET
T ss_pred CEEEEEECCCCccCHHHHHHHHHHHHHHhhc-C--C--eEEEEEEec
Confidence 466666644 78999999999999997 7 7 999888874
No 43
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=49.49 E-value=69 Score=20.65 Aligned_cols=40 Identities=13% Similarity=0.070 Sum_probs=26.5
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+|+|++.|...|..++..+....... . ...+++.+|+-..
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~-~--~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRY-P--YGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhc-C--CCeEEEEEEEECC
Confidence 57888888888887777766655532 1 1127777887543
No 44
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=47.13 E-value=58 Score=24.63 Aligned_cols=36 Identities=6% Similarity=0.193 Sum_probs=28.0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVH 46 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llh 46 (125)
..++|+++|-||..+..++++.-.+.+ . + . ++.++-
T Consensus 2 ~~k~IllgiTGSiaa~~~~~ll~~L~~-~-g--~--~V~vv~ 37 (390)
T TIGR00521 2 ENKKILLGVTGGIAAYKTVELVRELVR-Q-G--A--EVKVIM 37 (390)
T ss_pred CCCEEEEEEeCHHHHHHHHHHHHHHHh-C-C--C--EEEEEE
Confidence 357899999999999999888877754 3 5 6 766554
No 45
>PF13362 Toprim_3: Toprim domain
Probab=46.93 E-value=56 Score=18.88 Aligned_cols=30 Identities=10% Similarity=0.163 Sum_probs=24.7
Q ss_pred CCCeEEEEeCCChH--HHHHHHHHHHHhhhcCC
Q 033189 5 ETQTMVVGIDDSEH--STYALQWTLDHFFANST 35 (125)
Q Consensus 5 ~~~~IlvavD~s~~--s~~a~~~a~~la~~~~~ 35 (125)
..++|+++.|.... .+++...+...+... +
T Consensus 40 ~~~~vii~~D~D~~~~G~~~a~~~~~~~~~~-g 71 (96)
T PF13362_consen 40 PGRRVIIAADNDKANEGQKAAEKAAERLEAA-G 71 (96)
T ss_pred CCCeEEEEECCCCchhhHHHHHHHHHHHHhC-C
Confidence 57889999999988 888888887777765 5
No 46
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=46.74 E-value=57 Score=20.29 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=24.0
Q ss_pred EEEEeCCChH-----HHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 9 MVVGIDDSEH-----STYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 9 IlvavD~s~~-----s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
|++++|-|.+ -.+.+.....+++.. + . +++++.+
T Consensus 1 i~vaiDtSGSis~~~l~~fl~ev~~i~~~~-~--~--~v~vi~~ 39 (126)
T PF09967_consen 1 IVVAIDTSGSISDEELRRFLSEVAGILRRF-P--A--EVHVIQF 39 (126)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHhC-C--C--CEEEEEE
Confidence 5788998864 345566667777775 5 6 8888876
No 47
>cd01029 TOPRIM_primases TOPRIM_primases: The topoisomerase-primase (TORPIM) nucleotidyl transferase/hydrolase domain found in the active site regions of bacterial DnaG-type primases and their homologs. Primases synthesize RNA primers for the initiation of DNA replication. DnaG type primases are often closely associated with DNA helicases in primosome assemblies. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). This glutamate and two aspartates, cluster together to form a highly acid surface patch. The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function. The prototypical bacterial primase. Escherichia coli DnaG is a single subunit enzyme.
Probab=46.39 E-value=50 Score=18.16 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=23.1
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhc
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFAN 33 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~ 33 (125)
++|+++.|.....+.+...+...++..
T Consensus 44 ~~vii~~D~D~~G~~~~~~~~~~~~~~ 70 (79)
T cd01029 44 RTVILAFDNDEAGKKAAARALELLLAL 70 (79)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHC
Confidence 889999999999888888887777764
No 48
>PRK10799 metal-binding protein; Provisional
Probab=46.34 E-value=33 Score=23.98 Aligned_cols=14 Identities=29% Similarity=0.503 Sum_probs=12.2
Q ss_pred CCCeEEEEeCCChH
Q 033189 5 ETQTMVVGIDDSEH 18 (125)
Q Consensus 5 ~~~~IlvavD~s~~ 18 (125)
..++|++++|.+..
T Consensus 34 ~v~~I~~alD~t~~ 47 (247)
T PRK10799 34 TVQKIVTGVTASQA 47 (247)
T ss_pred cccEEEEEeCCCHH
Confidence 46899999999985
No 49
>TIGR00486 YbgI_SA1388 dinuclear metal center protein, YbgI/SA1388 family. The characterization of this family of uncharacterized proteins as orthologous is tentative. Members are found in all three domains of life. Several members (from Bacillus subtilis, Listeria monocytogenes, and Mycobacterium tuberculosis - all classified as Firmicutes within the Eubacteria) share a long insert relative to other members.
Probab=45.79 E-value=44 Score=23.41 Aligned_cols=15 Identities=40% Similarity=0.605 Sum_probs=12.5
Q ss_pred CCCCeEEEEeCCChH
Q 033189 4 AETQTMVVGIDDSEH 18 (125)
Q Consensus 4 ~~~~~IlvavD~s~~ 18 (125)
...++|++++|.++.
T Consensus 34 ~~v~~I~~alD~t~~ 48 (249)
T TIGR00486 34 EEVKKVVVAVDASES 48 (249)
T ss_pred cccCEEEEEecCCHH
Confidence 357899999999984
No 50
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=45.78 E-value=60 Score=25.32 Aligned_cols=36 Identities=11% Similarity=-0.050 Sum_probs=29.7
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
.++|+++|-||-.+..+.++.-.+.+. | . +++++-.
T Consensus 70 ~k~IllgVtGsIAayka~~lvr~L~k~--G--~--~V~VvmT 105 (475)
T PRK13982 70 SKRVTLIIGGGIAAYKALDLIRRLKER--G--A--HVRCVLT 105 (475)
T ss_pred CCEEEEEEccHHHHHHHHHHHHHHHhC--c--C--EEEEEEC
Confidence 588999999999999999998888664 5 6 7766654
No 51
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=45.29 E-value=56 Score=19.13 Aligned_cols=29 Identities=7% Similarity=0.129 Sum_probs=24.3
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhc
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFAN 33 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~ 33 (125)
....|++++|.+.+.+....+...++...
T Consensus 59 ~~~~iiiatD~D~EGe~Ia~~i~~~~~~~ 87 (100)
T PF01751_consen 59 KADEIIIATDPDREGELIAWEIIELLGKN 87 (100)
T ss_dssp SCSEEEEEC-SSHHHHHHHHHHHHHHHHH
T ss_pred hccEeeecCCCChHHHHHHHHHHHHHhHh
Confidence 35789999999999999999998888775
No 52
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=45.19 E-value=34 Score=24.40 Aligned_cols=36 Identities=8% Similarity=0.040 Sum_probs=29.0
Q ss_pred EeCCChHHHHHHHHHHHHhh-hcCCCCCCcEEEEEEEecCCC
Q 033189 12 GIDDSEHSTYALQWTLDHFF-ANSTVNPPFKLVIVHARPSPS 52 (125)
Q Consensus 12 avD~s~~s~~a~~~a~~la~-~~~~~~~~~~l~llhv~~~~~ 52 (125)
+...++....|++.|+++.. .. + . +++++++-++..
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~-~--~--eV~vlt~Gp~~a 68 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGY-G--G--EVTVLTMGPPQA 68 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCC-C--c--eEEEEEecchhh
Confidence 34456788999999999999 46 6 6 999999987654
No 53
>PF01784 NIF3: NIF3 (NGG1p interacting factor 3); InterPro: IPR002678 This family contains several NIF3 (NGG1p interacting factor 3) protein homologues. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown [][].; PDB: 1NMO_F 1NMP_B 2GX8_C 2FYW_B 2NYD_A 3LNL_A 2YYB_A 3RXY_F.
Probab=39.61 E-value=34 Score=23.77 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=20.0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
..++|++++|.++. +++.|+ .. + + .+.+.|=
T Consensus 31 ~v~~V~~~ld~t~~---vi~~A~----~~-~--~--dlIItHH 61 (241)
T PF01784_consen 31 EVKKVLVALDATPE---VIEEAI----EK-G--A--DLIITHH 61 (241)
T ss_dssp BESEEEEESS-SHH---HHHHHH----HT-T-----SEEEESS
T ss_pred ccCEEEEEEeCCHH---HHHHHH----Hc-C--C--CEEEEcC
Confidence 46899999999984 333333 34 5 6 7888774
No 54
>PF13155 Toprim_2: Toprim-like
Probab=36.78 E-value=79 Score=18.08 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=24.3
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhc
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFAN 33 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~ 33 (125)
.++|.++.|-...+..+.+.........
T Consensus 47 ~~~i~l~~DnD~aG~~~~~~~~~~l~~~ 74 (96)
T PF13155_consen 47 YKKIVLAFDNDEAGRKAAEKLQKELKEE 74 (96)
T ss_pred CCcEEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 4789999999999999999998877763
No 55
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=36.77 E-value=1.1e+02 Score=20.44 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=24.2
Q ss_pred eEEEEeCCChHH-HHHHHHHHHHhhhcCCCCCCcEEEEEE
Q 033189 8 TMVVGIDDSEHS-TYALQWTLDHFFANSTVNPPFKLVIVH 46 (125)
Q Consensus 8 ~IlvavD~s~~s-~~a~~~a~~la~~~~~~~~~~~l~llh 46 (125)
||++++-||... ...++....+.++. | . ++.++-
T Consensus 1 ~i~~gitGsg~~l~e~v~~l~~L~~~~-g--~--eV~vv~ 35 (174)
T TIGR02699 1 RIAWGITGSGDKLPETYSIMKDVKNRY-G--D--EIDVFL 35 (174)
T ss_pred CEEEEEEccHHHHHHHHHHHHHHHHhc-C--C--EEEEEE
Confidence 689999999544 55778888887775 6 5 655543
No 56
>PRK12342 hypothetical protein; Provisional
Probab=36.43 E-value=73 Score=22.62 Aligned_cols=33 Identities=9% Similarity=-0.005 Sum_probs=27.5
Q ss_pred eCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCC
Q 033189 13 IDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 13 vD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~ 51 (125)
...++...+|++.|+++- .. | . +++++++-++.
T Consensus 31 ~~iNp~D~~AlE~AlrLk-~~-g--~--~Vtvls~Gp~~ 63 (254)
T PRK12342 31 AKISQFDLNAIEAASQLA-TD-G--D--EIAALTVGGSL 63 (254)
T ss_pred ccCChhhHHHHHHHHHHh-hc-C--C--EEEEEEeCCCh
Confidence 346778999999999998 55 7 7 99999998764
No 57
>COG0452 Dfp Phosphopantothenoylcysteine synthetase/decarboxylase [Coenzyme metabolism]
Probab=34.51 E-value=1e+02 Score=23.36 Aligned_cols=38 Identities=8% Similarity=0.083 Sum_probs=29.6
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
.|+||++|.||=.+..+++.+-.+-+. | + ++.++-.-+
T Consensus 4 ~k~ill~v~gsiaayk~~~l~r~L~~~--g--a--~v~vvmt~~ 41 (392)
T COG0452 4 GKRILLGVTGSIAAYKSVELVRLLRRS--G--A--EVRVVMTES 41 (392)
T ss_pred CceEEEEecCchhhhhHHHHHHHHhhC--C--C--eeEEEcchh
Confidence 468999999999999998777776665 5 6 777776543
No 58
>PF14582 Metallophos_3: Metallophosphoesterase, calcineurin superfamily; PDB: 1UF3_B 2YVT_A.
Probab=33.62 E-value=33 Score=24.24 Aligned_cols=28 Identities=4% Similarity=-0.091 Sum_probs=16.0
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhc
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFAN 33 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~ 33 (125)
+.|+||...|+-. ...+++.-...+...
T Consensus 4 ~~~kilA~s~~~g-~~e~l~~l~~~~~e~ 31 (255)
T PF14582_consen 4 MVRKILAISNFRG-DFELLERLVEVIPEK 31 (255)
T ss_dssp S--EEEEEE--TT--HHHHHHHHHHHHHH
T ss_pred cchhheeecCcch-HHHHHHHHHhhcccc
Confidence 4677888777765 345666677777765
No 59
>PLN02496 probable phosphopantothenoylcysteine decarboxylase
Probab=33.41 E-value=1.5e+02 Score=20.43 Aligned_cols=38 Identities=5% Similarity=-0.066 Sum_probs=27.9
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEe
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~ 48 (125)
.+.++||++|-||-.+.++.+..-.+ + . + . ++.++-.-
T Consensus 17 ~~~k~IllgVtGSIAAyk~~~lvr~L-~-~-g--~--~V~VvmT~ 54 (209)
T PLN02496 17 PRKPRILLAASGSVAAIKFGNLCHCF-S-E-W--A--EVRAVVTK 54 (209)
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHh-c-C-C--C--eEEEEECh
Confidence 35688999999999998888866555 3 3 4 5 77766553
No 60
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=32.94 E-value=65 Score=21.58 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=19.6
Q ss_pred eEEEEeCCChHHHHHHHHHHHHhh
Q 033189 8 TMVVGIDDSEHSTYALQWTLDHFF 31 (125)
Q Consensus 8 ~IlvavD~s~~s~~a~~~a~~la~ 31 (125)
++.+-+||...++++++.+++..-
T Consensus 1 kVIlvTDGD~~A~ravE~aa~~iG 24 (180)
T PF14097_consen 1 KVILVTDGDEYAKRAVEIAAKNIG 24 (180)
T ss_pred CEEEEECChHHHHHHHHHHHHHhC
Confidence 467779999999999999876544
No 61
>TIGR01391 dnaG DNA primase, catalytic core. This protein contains a CHC2 zinc finger (Pfam:PF01807) and a Toprim domain (Pfam:PF01751).
Probab=31.01 E-value=1.6e+02 Score=22.37 Aligned_cols=28 Identities=7% Similarity=0.162 Sum_probs=24.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCC
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANST 35 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~ 35 (125)
++|+++.|+++..+.|...++..+... +
T Consensus 301 ~~vvl~~D~D~aG~~aa~r~~~~l~~~-g 328 (415)
T TIGR01391 301 DEIILCFDGDKAGRKAALRAIELLLPL-G 328 (415)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHHc-C
Confidence 589999999999999999988888876 5
No 62
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=30.09 E-value=36 Score=24.24 Aligned_cols=16 Identities=19% Similarity=0.492 Sum_probs=11.8
Q ss_pred hccCCccEEEEcCCCC
Q 033189 108 AHHAHCTVMIVKRPKT 123 (125)
Q Consensus 108 l~~a~~pVlvV~~~~~ 123 (125)
+.+.+||||++...++
T Consensus 188 I~~i~~PVLiiHgtdD 203 (258)
T KOG1552|consen 188 ISKITCPVLIIHGTDD 203 (258)
T ss_pred ceeccCCEEEEecccC
Confidence 4567899999986543
No 63
>TIGR03671 cca_archaeal CCA-adding enzyme.
Probab=29.90 E-value=1.8e+02 Score=22.36 Aligned_cols=52 Identities=21% Similarity=0.275 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCcccceeeeCcchHHH-hc-cCCccEEEEcCC
Q 033189 70 DSDLKKIAARLVEEAKEICSSKSVMISLAVLGSVSDYC-AH-HAHCTVMIVKRP 121 (125)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Gs~s~~v-l~-~a~~pVlvV~~~ 121 (125)
.+..++.++++.+...+.+.+.+....-.++||++..- +. .+.+.|+++=+.
T Consensus 16 ~~~~~~~~~~l~~~l~~~~~e~~~~~~v~~~GS~ArgT~L~G~sDIDIfi~f~~ 69 (408)
T TIGR03671 16 REKLKKVADELIARLEEIIEELGVDAEVVLVGSYARGTWLKGDRDIDIFILFPK 69 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcceEEEEeeEecCCccCCCCceeEEEEeCC
Confidence 44555666777777777777766666777889998743 33 678998876543
No 64
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.19 E-value=1.6e+02 Score=21.96 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=24.9
Q ss_pred CeEEEEeCCChH-HHHHHH----HHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 7 QTMVVGIDDSEH-STYALQ----WTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 7 ~~IlvavD~s~~-s~~a~~----~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
-+|+++||-|.+ ...+++ ....+.+.. + - +++|+.|-..
T Consensus 262 ~~i~vaVDtSGS~~d~ei~a~~~Ei~~Il~~~-~--~--eltli~~D~~ 305 (396)
T COG3864 262 IKIVVAVDTSGSMTDAEIDAAMTEIFDILKNK-N--Y--ELTLIECDNI 305 (396)
T ss_pred hheEEEEecCCCccHHHHHHHHHHHHHHHhCC-C--c--EEEEEEecch
Confidence 469999998864 233444 444455443 3 5 8999999543
No 65
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=27.99 E-value=1.7e+02 Score=18.82 Aligned_cols=64 Identities=13% Similarity=0.040 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCCcccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhhcCccccee
Q 033189 19 STYALQWTLDHFFANSTVNPPFKLVIVHARPSPSAVIGLAGHGAVEVLPHVDSDLKKIAARLVEEAKEICSSKSVMISLA 98 (125)
Q Consensus 19 s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 98 (125)
..+|++.....+++. + + +-+++|-+.-.+.... .=+.+.+++..+++.+...|..+.+.
T Consensus 56 v~~av~eI~~~a~kv-~--~--~~ivlyPyAHLSs~La----------------~P~~A~~iL~~le~~L~~~g~eV~ra 114 (138)
T PF08915_consen 56 VEKAVEEIKWVAKKV-K--A--KRIVLYPYAHLSSSLA----------------SPDVAVEILKKLEERLKSRGFEVYRA 114 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-----SEEEEEE-GGGSSSB------------------HHHHHHHHHHHHHHHHHTT-EEEE-
T ss_pred HHHHHHHHHHHHHhc-C--C--CEEEEeCcccccCCcC----------------ChHHHHHHHHHHHHHHHhCCCeEEEe
Confidence 568888889999997 7 6 7888887665432211 01345567777777777777776666
Q ss_pred eeCcc
Q 033189 99 VLGSV 103 (125)
Q Consensus 99 ~~Gs~ 103 (125)
-||..
T Consensus 115 PFGwy 119 (138)
T PF08915_consen 115 PFGWY 119 (138)
T ss_dssp -TTEE
T ss_pred CCccc
Confidence 66643
No 66
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=27.94 E-value=2e+02 Score=19.59 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=23.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
.++|+|++.|......+++..-.+... + - +++++-.
T Consensus 2 ~~riivgisGASG~iygvrlLe~L~~~--~--~--e~hlviS 37 (191)
T COG0163 2 MKRIIVGISGASGAIYGVRLLEVLREL--G--V--ETHLVIS 37 (191)
T ss_pred CcEEEEEEeccccHHHHHHHHHHHHhc--C--c--eEEEEEc
Confidence 468999999998776666555444443 2 3 6666543
No 67
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=27.04 E-value=1.1e+02 Score=22.93 Aligned_cols=28 Identities=7% Similarity=-0.047 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|+.. + . +|+++|=..
T Consensus 163 ~~~eRI~r~AF~~A~~r-~--~--~Vt~v~KaN 190 (349)
T TIGR00169 163 PEIERIARVAFEMARKR-R--K--KVTSVDKAN 190 (349)
T ss_pred HHHHHHHHHHHHHHHHc-C--C--cEEEEECCc
Confidence 36889999999999987 5 4 777777544
No 68
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=26.96 E-value=1.7e+02 Score=20.19 Aligned_cols=36 Identities=11% Similarity=0.007 Sum_probs=25.6
Q ss_pred eEEEEeCCChHH-HHHHHHHHHHhhhcCCCCCCcEEEEEEE
Q 033189 8 TMVVGIDDSEHS-TYALQWTLDHFFANSTVNPPFKLVIVHA 47 (125)
Q Consensus 8 ~IlvavD~s~~s-~~a~~~a~~la~~~~~~~~~~~l~llhv 47 (125)
||+++|-||..+ ..+++..-.|-+..-| . ++.++-.
T Consensus 1 ~i~~~itGs~~~~~~~~~l~~~L~~~~~g--~--~V~vv~T 37 (234)
T TIGR02700 1 RIGWGITGAGHLLVESFQVMKELKREIEE--L--RVSTFVS 37 (234)
T ss_pred CeEEEEeCccHhHHHHHHHHHHHHhhcCC--C--eEEEEEC
Confidence 689999997655 6888888888776203 4 6666654
No 69
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=26.74 E-value=1.1e+02 Score=22.62 Aligned_cols=28 Identities=18% Similarity=0.179 Sum_probs=21.5
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEe
Q 033189 16 SEHSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (125)
Q Consensus 16 s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~ 48 (125)
...+++.+++|..+|++. + . +|+++|=.
T Consensus 140 r~~~eRi~r~AF~~A~~r-~--~--~Vt~v~Ka 167 (322)
T TIGR02088 140 REGSERIARFAFNLAKER-N--R--KVTCVHKA 167 (322)
T ss_pred HHHHHHHHHHHHHHHHHc-C--C--cEEEEeCC
Confidence 357889999999999987 5 5 66666543
No 70
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=26.74 E-value=74 Score=24.75 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCC
Q 033189 20 TYALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52 (125)
Q Consensus 20 ~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~ 52 (125)
..|+..|+.+|++. + + +|+++||.....
T Consensus 232 aEA~~rai~ia~~~-n--c--PlyvvhVmsksa 259 (522)
T KOG2584|consen 232 AEATNRAITIARQA-N--C--PLYVVHVMSKSA 259 (522)
T ss_pred HHHHHHHHHHHHhc-C--C--CcceEEEeehhH
Confidence 47888999999997 7 8 999999986543
No 71
>PRK08194 tartrate dehydrogenase; Provisional
Probab=26.22 E-value=1.1e+02 Score=22.87 Aligned_cols=28 Identities=4% Similarity=0.086 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|++. . . +|+++|=..
T Consensus 161 ~~~eRI~r~Af~~A~~r-~--~--~Vt~v~KaN 188 (352)
T PRK08194 161 KGTERAMRYAFELAAKR-R--K--HVTSATKSN 188 (352)
T ss_pred HHHHHHHHHHHHHHHHc-C--C--cEEEEeCcc
Confidence 36889999999999886 5 4 788887644
No 72
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=25.91 E-value=1.6e+02 Score=17.83 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=32.1
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEe
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~ 48 (125)
..+|.+=+..+++.+..+.|++.+.+.. . . +|.++++.
T Consensus 86 ~~~I~iW~~~~~~dq~gl~~~l~~L~~~-~--~--~I~~v~~t 123 (124)
T PF08874_consen 86 DDPIVIWYGDNAYDQLGLRYLLSLLKDK-P--N--RIYVVNVT 123 (124)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHhcCC-C--C--eEEEEeCC
Confidence 4578888899999999999999999986 4 5 88888763
No 73
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=24.08 E-value=1.5e+02 Score=16.76 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=30.9
Q ss_pred EEEEeCCC-hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCC
Q 033189 9 MVVGIDDS-EHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52 (125)
Q Consensus 9 IlvavD~s-~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~ 52 (125)
..+.|+|. +.|.+|++....+....++ .+.+|.++-+...+.
T Consensus 4 L~Lyv~g~tp~S~~ai~nl~~i~e~~l~--~~~~LeVIDv~~~P~ 46 (72)
T cd02978 4 LRLYVAGRTPKSERALQNLKRILEELLG--GPYELEVIDVLKQPQ 46 (72)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHhcC--CcEEEEEEEcccCHh
Confidence 45677777 9999999999998888523 444777777766543
No 74
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=23.86 E-value=1.4e+02 Score=22.49 Aligned_cols=29 Identities=10% Similarity=-0.017 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
..+++.+++|..+|+.. + . +|+++|=...
T Consensus 166 ~~~~Ri~r~Af~~A~~r-~--~--~Vt~v~KaNv 194 (358)
T PRK00772 166 EEIERIARVAFELARKR-R--K--KVTSVDKANV 194 (358)
T ss_pred HHHHHHHHHHHHHHHHc-C--C--cEEEEECccc
Confidence 36889999999999987 5 4 7888876443
No 75
>PRK08417 dihydroorotase; Provisional
Probab=23.68 E-value=84 Score=23.43 Aligned_cols=25 Identities=8% Similarity=-0.170 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 20 TYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 20 ~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..++..++.+|+.. + + +++++|+-.
T Consensus 181 ~~~v~~~~~la~~~-~--~--~lhi~hvS~ 205 (386)
T PRK08417 181 TKEVAKMKELAKFY-K--N--KVLFDTLAL 205 (386)
T ss_pred HHHHHHHHHHHHHh-C--C--CEEEEeCCC
Confidence 36889999999997 7 7 999999954
No 76
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=23.59 E-value=2.4e+02 Score=20.51 Aligned_cols=40 Identities=13% Similarity=0.184 Sum_probs=28.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+.++++++.|...|.-.+..+.+..... + . ++.++|+-+.
T Consensus 27 f~~~vv~~SGGKDS~VLL~La~ka~~~~-~--~--~~~vl~iDTG 66 (301)
T PRK05253 27 FENPVMLYSIGKDSSVMLHLARKAFYPG-K--L--PFPLLHVDTG 66 (301)
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhhccc-C--C--CeeEEEEeCC
Confidence 5788999999888888887776654432 2 3 6778888544
No 77
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=23.34 E-value=1.4e+02 Score=16.29 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=22.5
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEE
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIV 45 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~ll 45 (125)
.+.+++.+..+.++...++ +++.++.. | . ++..+
T Consensus 47 ~~d~~i~iS~sg~t~~~~~-~~~~a~~~-g--~--~ii~i 80 (87)
T cd04795 47 KGDVVIALSYSGRTEELLA-ALEIAKEL-G--I--PVIAI 80 (87)
T ss_pred CCCEEEEEECCCCCHHHHH-HHHHHHHc-C--C--eEEEE
Confidence 4568888888887766554 55666666 5 5 65544
No 78
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=22.92 E-value=1.9e+02 Score=21.33 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=25.7
Q ss_pred EEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEe
Q 033189 9 MVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHAR 48 (125)
Q Consensus 9 IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~ 48 (125)
=|+++|-.+ .|++.|-.....+ + . +++++|..
T Consensus 50 ~li~~DrD~---~Ai~~a~~~l~~~-~--~--r~~~v~~~ 81 (314)
T COG0275 50 RLIGIDRDP---QAIAIAKERLKEF-D--G--RVTLVHGN 81 (314)
T ss_pred eEEEEcCCH---HHHHHHHHHhhcc-C--C--cEEEEeCc
Confidence 477888777 6888888888885 7 6 99999983
No 79
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=22.78 E-value=2.7e+02 Score=20.52 Aligned_cols=39 Identities=13% Similarity=0.153 Sum_probs=23.6
Q ss_pred CCeEEEEeCCChH---------------HHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 6 TQTMVVGIDDSEH---------------STYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 6 ~~~IlvavD~s~~---------------s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+++|+|++.|..- .+.+.+..+.+.+. | - ++.+.|-..+
T Consensus 2 ~~~ivvalgGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~--g--~--~vvi~hGnGp 55 (313)
T PRK12454 2 KKRIVIALGGNALLQPGEKGTAENQMKNVRKTAKQIADLIEE--G--Y--EVVITHGNGP 55 (313)
T ss_pred CceEEEEeChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHc--C--C--EEEEEECCCh
Confidence 4789999987651 12233333333333 3 4 9999998766
No 80
>PRK12352 putative carbamate kinase; Reviewed
Probab=22.66 E-value=1.9e+02 Score=21.22 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=24.7
Q ss_pred CCeEEEEeCCChHHH------------HHHHHHHHHh--hhcCCCCCCcEEEEEEEecCC
Q 033189 6 TQTMVVGIDDSEHST------------YALQWTLDHF--FANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 6 ~~~IlvavD~s~~s~------------~a~~~a~~la--~~~~~~~~~~~l~llhv~~~~ 51 (125)
.|+|+|++.|+.-.. +.-..+..++ ... | - ++.|+|-..+.
T Consensus 2 ~k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~-G--~--~lVivHG~GPq 56 (316)
T PRK12352 2 KELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLAS-D--Y--DIVLTHGNGPQ 56 (316)
T ss_pred CcEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHC-C--C--eEEEEeCCCHH
Confidence 378999999886422 2222222233 333 4 5 99999986654
No 81
>PLN02329 3-isopropylmalate dehydrogenase
Probab=22.41 E-value=1.6e+02 Score=22.64 Aligned_cols=28 Identities=11% Similarity=-0.009 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|+.. + . +|+++|=..
T Consensus 211 ~~~eRI~r~AFe~A~~r-~--~--kVT~v~KaN 238 (409)
T PLN02329 211 HEIDRIARVAFETARKR-R--G--KLCSVDKAN 238 (409)
T ss_pred HHHHHHHHHHHHHHHHc-C--C--eEEEEECCC
Confidence 46899999999999987 5 4 777777533
No 82
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.13 E-value=2.3e+02 Score=19.16 Aligned_cols=40 Identities=8% Similarity=0.111 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
..+.+++.+..|..+...+ .++..|+.. | . +++.+--.+.
T Consensus 108 ~~gDvli~iS~SG~s~~v~-~a~~~Ak~~-G--~--~vI~IT~~~~ 147 (196)
T PRK10886 108 HAGDVLLAISTRGNSRDIV-KAVEAAVTR-D--M--TIVALTGYDG 147 (196)
T ss_pred CCCCEEEEEeCCCCCHHHH-HHHHHHHHC-C--C--EEEEEeCCCC
Confidence 4567999999998887744 678889987 7 7 8777776544
No 83
>cd05403 NT_KNTase_like Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is
Probab=21.93 E-value=71 Score=17.79 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=19.8
Q ss_pred ceeeeCcchHHHh-ccCCccEEEEcCCCC
Q 033189 96 SLAVLGSVSDYCA-HHAHCTVMIVKRPKT 123 (125)
Q Consensus 96 ~~~~~Gs~s~~vl-~~a~~pVlvV~~~~~ 123 (125)
.=+++||.+..-- ..+.+.++++.....
T Consensus 20 ~i~LfGS~arg~~~~~SDiDl~vi~~~~~ 48 (93)
T cd05403 20 KVYLFGSYARGDARPDSDIDLLVIFDDPL 48 (93)
T ss_pred EEEEEeeeecCCCCCCCCeeEEEEeCCCC
Confidence 4468899887554 467899988876543
No 84
>PLN00200 argininosuccinate synthase; Provisional
Probab=21.90 E-value=3.7e+02 Score=20.59 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=29.3
Q ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 4 AETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 4 ~~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
+|.++|+|++.|.-.|.-++.++.. .. + . +++.+|+-..
T Consensus 3 ~~~~kVvva~SGGlDSsvla~~L~e---~~-G--~--eViav~id~G 41 (404)
T PLN00200 3 GKLNKVVLAYSGGLDTSVILKWLRE---NY-G--C--EVVCFTADVG 41 (404)
T ss_pred CCCCeEEEEEeCCHHHHHHHHHHHH---hh-C--C--eEEEEEEECC
Confidence 4567999999999888887777654 33 5 5 8888888654
No 85
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=21.63 E-value=1.5e+02 Score=22.02 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|++. + . .+|+++|=..
T Consensus 147 ~~~eRi~r~Af~~A~~r-~--~-~~Vt~v~KaN 175 (334)
T PRK08997 147 KGAERIVRFAYELARKE-G--R-KKVTAVHKAN 175 (334)
T ss_pred HHHHHHHHHHHHHHHhc-C--C-CeEEEEeCCC
Confidence 46889999999999886 4 2 2588887544
No 86
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=21.58 E-value=2e+02 Score=21.96 Aligned_cols=41 Identities=12% Similarity=0.202 Sum_probs=31.8
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCC
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~ 52 (125)
++|+|+.|....|....+..+.-+... | . +++.+...+.|.
T Consensus 41 ~~VvVg~D~R~ss~~l~~a~~~gL~s~-G--~--~V~~~g~~pTP~ 81 (448)
T PRK14316 41 PKVLVGRDTRISGDMLESALIAGLLSV-G--A--EVMRLGVIPTPG 81 (448)
T ss_pred CeEEEEECCCcCHHHHHHHHHHHHHHC-C--C--EEEEecccchHH
Confidence 459999999998887777777766666 7 6 888887766553
No 87
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=21.21 E-value=2e+02 Score=21.41 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
+.+++.+++|..+|++. + ..+|+++|=..
T Consensus 160 ~~~eRi~r~AF~~A~~r-~---~k~Vt~v~KaN 188 (348)
T PF00180_consen 160 EGIERIARFAFEYARKR-G---RKKVTVVHKAN 188 (348)
T ss_dssp HHHHHHHHHHHHHHHHT-T---TSEEEEEESTT
T ss_pred chhhHHHHHHHHHHHHh-C---CceEEEEeccc
Confidence 46889999999999997 5 23888888644
No 88
>PRK13820 argininosuccinate synthase; Provisional
Probab=21.19 E-value=3.4e+02 Score=20.71 Aligned_cols=39 Identities=5% Similarity=0.089 Sum_probs=27.3
Q ss_pred CCCeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 5 ETQTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 5 ~~~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
++++|+|++.|.-.|.-++.++... . +- . +++.+|+...
T Consensus 1 ~~~kVvvA~SGGvDSsvll~lL~e~---~-g~-~--~Viav~vd~g 39 (394)
T PRK13820 1 MMKKVVLAYSGGLDTSVCVPLLKEK---Y-GY-D--EVITVTVDVG 39 (394)
T ss_pred CCCeEEEEEeCcHHHHHHHHHHHHh---c-CC-C--EEEEEEEECC
Confidence 4578999999998888888775432 2 20 2 7888888643
No 89
>PRK12686 carbamate kinase; Reviewed
Probab=21.05 E-value=1.9e+02 Score=21.28 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCChH-----H--------HHHHHHHHHHhhhcCCCCCCcEEEEEEEecCC
Q 033189 5 ETQTMVVGIDDSEH-----S--------TYALQWTLDHFFANSTVNPPFKLVIVHARPSP 51 (125)
Q Consensus 5 ~~~~IlvavD~s~~-----s--------~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~ 51 (125)
|.++|+|++.|+.- . +.+.+..+.+.+. | - ++.+.|-..+.
T Consensus 1 ~~~~iVialGGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~--g--~--~~vi~HGnGPQ 54 (312)
T PRK12686 1 MKEKIVIALGGNAILQTEATAEAQQTAVREAAQHLVDLIEA--G--H--DIVITHGNGPQ 54 (312)
T ss_pred CCCEEEEEcChHhhCCCCCChHHHHHHHHHHHHHHHHHHHC--C--C--EEEEEeCCcHH
Confidence 45789999998763 1 3444444444443 3 4 99999986554
No 90
>cd01027 TOPRIM_RNase_M5_like TOPRIM_ RNase M5_like: The topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain found in Ribonuclease M5: (RNase M5) and other small primase-like proteins from bacteria and archaea. RNase M5 catalyzes the maturation of 5S rRNA in low G+C Gram-positive bacteria. The TOPRIM domain has two conserved motifs, one of which centers at a conserved glutamate and the other one at two conserved aspartates (DxD). The conserved glutamate may act as a general base in nucleotide polymerization by primases. The DXD motif may co-ordinate Mg2+, a cofactor required for full catalytic function.
Probab=20.67 E-value=1.8e+02 Score=16.52 Aligned_cols=27 Identities=4% Similarity=-0.037 Sum_probs=23.2
Q ss_pred CCeEEEEeCCChHHHHHHHHHHHHhhh
Q 033189 6 TQTMVVGIDDSEHSTYALQWTLDHFFA 32 (125)
Q Consensus 6 ~~~IlvavD~s~~s~~a~~~a~~la~~ 32 (125)
.+.|.+.+|+....+++........+.
T Consensus 45 ~~~VIiltD~D~aG~~i~~~~~~~l~~ 71 (81)
T cd01027 45 YRGVIILTDPDRKGEKIRKKLSEYLSG 71 (81)
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHhcc
Confidence 578999999999999998888887765
No 91
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=20.48 E-value=2.2e+02 Score=21.80 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=32.2
Q ss_pred CeEEEEeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecCCC
Q 033189 7 QTMVVGIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPSPS 52 (125)
Q Consensus 7 ~~IlvavD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~~~ 52 (125)
++|+|+-|....|+...+..+.-+... | . +++.+...+.|.
T Consensus 36 ~~VvVg~D~R~~s~~l~~a~~~gL~s~-G--~--~V~~lg~~pTP~ 76 (445)
T PRK09542 36 TTVVIGHDMRDSSPELAAAFAEGVTAQ-G--L--DVVRIGLASTDQ 76 (445)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHC-C--C--EEEEeCCCCCHH
Confidence 569999999988888887777777776 7 6 888887766553
No 92
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=20.47 E-value=2.2e+02 Score=21.72 Aligned_cols=34 Identities=3% Similarity=-0.087 Sum_probs=26.1
Q ss_pred EeCCChHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEecC
Q 033189 12 GIDDSEHSTYALQWTLDHFFANSTVNPPFKLVIVHARPS 50 (125)
Q Consensus 12 avD~s~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~~ 50 (125)
-....+++++.+++|..+|+.. + - +|+++|=-.-
T Consensus 171 ~~N~~~si~RiAr~AF~~A~~r-~--~--~Vt~v~KaNI 204 (393)
T PLN00096 171 YHNPLDNVHHLARIFFGRCLDA-G--I--VPYVVTKKTV 204 (393)
T ss_pred eccCHHHHHHHHHHHHHHHHHh-C--C--cEEEEeCccc
Confidence 4566678899999999999987 5 5 7777775443
No 93
>TIGR02089 TTC tartrate dehydrogenase. Tartrate dehydrogenase catalyzes the oxidation of both meso- and (+)-tartrate as well as a D-malate. These enzymes are closely related to the 3-isopropylmalate and isohomocitrate dehydrogenases found in TIGR00169 and TIGR02088, respectively.
Probab=20.19 E-value=1.6e+02 Score=22.00 Aligned_cols=28 Identities=4% Similarity=0.035 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCcEEEEEEEec
Q 033189 17 EHSTYALQWTLDHFFANSTVNPPFKLVIVHARP 49 (125)
Q Consensus 17 ~~s~~a~~~a~~la~~~~~~~~~~~l~llhv~~ 49 (125)
..+++.+++|..+|++. . . +|+++|=..
T Consensus 164 ~~~eRi~r~Af~~A~~r-r--~--kVt~v~KaN 191 (352)
T TIGR02089 164 KGVERIMRFAFELAQKR-R--K--HLTSATKSN 191 (352)
T ss_pred HHHHHHHHHHHHHHHHc-C--C--CEEEEeCCc
Confidence 46889999999999886 5 4 788888644
No 94
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=20.17 E-value=95 Score=21.77 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=23.1
Q ss_pred cceeeeCcchHHHhccCCccEEEEcCCCC
Q 033189 95 ISLAVLGSVSDYCAHHAHCTVMIVKRPKT 123 (125)
Q Consensus 95 ~~~~~~Gs~s~~vl~~a~~pVlvV~~~~~ 123 (125)
+..+-=|.....++.+..||-||+....+
T Consensus 199 f~~~~dG~fCr~~lp~vkcPtli~hG~kD 227 (277)
T KOG2984|consen 199 FHSFCDGRFCRLVLPQVKCPTLIMHGGKD 227 (277)
T ss_pred HhhcCCCchHhhhcccccCCeeEeeCCcC
Confidence 44445577889999999999999987654
Done!